Citrus Sinensis ID: 040307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccEEEEEccccccccEEEEEEEccccccEEEEEEEcccccccccccEEEEccccccEEEEEEcccccccccEEEEEcccEEEEEEcccccccEEcccccccccccccEEEEEcccccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEcccccccEEEEEcccccccEEEEEEccccEEEEEEcccccccEEEcccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccEEEEcccccEEEEEEccccccEEEEEEcccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccEEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEEcccccccEEEEccccccccccEEEccccEEEEEEccccccccccHccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEEcccccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccccccccccEEEEEcccEEcEEEEccccccEEEEEcccEEEEEEc
Coil and Loop (DISEMBL)
mqscsekkpgvhtymaqwpisTVAWSVRHDRKSRLAVGSFLedysnkielvnfnpetsdfsadnrlifdhpytptniaffpseetlnpdivatsgdslrlwEIHDDRTELKSLLnsnktsefssaitsfdwagfdtrrvatcsvdttcvIWDIDREILETQLVAHDrevydiswGGFNVFASvsgdcsvrvfdlrdkerstiiyenpvqdcpllrlewnkadprfmatvgmdsnkVVVLdirfptnpvvvlskhegsvngiswaplygrrlcsvaddSRALIWEVvgpgyrsgnggpsgdvepelCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Flexible Loop (DISEMBL)
mqscsekkpgvhtymaqWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSllnsnktsefssaITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRdkerstiiyenpvqdcpllRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVvlskhegsvngiswaPLYGRRLCSVADDSRALIWEVVGpgyrsgnggpSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Low Complexity Region (SEG)
MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Disordered region (IsUnstruct)
**********VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELK*L********FSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS********VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLL**
Disordered Region (DISOPRED)
***************AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLL***KTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG***************PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Disordered Region (DISEMBL)
**********VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Disordered Region (DISPRO)
*******KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
Q38960	346	WD repeat-containing prot	yes	no	0.967	0.947	0.540	1e-102
Q9LPV9	346	WD repeat-containing prot	no	no	0.970	0.950	0.544	1e-102
Q9XGN1	341	Protein TRANSPARENT TESTA	no	no	0.943	0.938	0.515	1e-93
P61963	342	DDB1- and CUL4-associated	yes	no	0.961	0.953	0.448	6e-82
P61962	342	DDB1- and CUL4-associated	yes	no	0.961	0.953	0.448	6e-82
Q552R1	325	DDB1- and CUL4-associated	yes	no	0.946	0.987	0.470	9e-81
Q12523	523	WD repeat-containing prot	yes	no	0.943	0.611	0.309	2e-40
O74763	435	Uncharacterized WD repeat	yes	no	0.958	0.747	0.288	2e-34
Q75C99	423	Histone acetyltransferase	no	no	0.463	0.371	0.306	9e-13
Q9XF57	317	Peroxisome biogenesis pro	no	no	0.471	0.504	0.301	1e-11

>sp|Q38960|LWD2_ARATH WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/335 (54%), Positives = 233/335 (69%), Gaps = 7/335 (2%)

Query: 7   KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
           K+  ++TY A W I  + WS+R D+K RLA+ S +E Y N++E+V  +    +  +D  L
Sbjct: 17  KRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNL 76

Query: 67  IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDD--RTELKSLLNSNKTSEFSS 124
            F+HPY PT  +F P +E   PD++ATS D LRLW I DD  R ELKS L+S+K SEFS 
Sbjct: 77  CFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSG 136

Query: 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVS 184
            ITSFDW   + RR+ T S+DTTC IWDI+RE+++TQL+AHD+EVYDI+WGG  VFASVS
Sbjct: 137 PITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVS 196

Query: 185 GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244
            D SVRVFDLRDKE STIIYE+     PL+RL WNK DPR+MATV M S K+VVLDIRFP
Sbjct: 197 EDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFP 256

Query: 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304
             PVV L +H+ SVN I+WAP     +CS  DDS+ALIW++   G     G     ++P 
Sbjct: 257 ALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVEGG-----LDPI 311

Query: 305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           L Y + AE+  ++WS  + DW+AIAF NKLQ+L+V
Sbjct: 312 LAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346

Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPV9|LWD1_ARATH WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/336 (54%), Positives = 231/336 (68%), Gaps = 7/336 (2%)

Query: 6   EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR 65
           +K+  ++TY A W I  + WSVR D+K RLA+ S LE Y N++E+V  +    +  +D  
Sbjct: 16  QKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPN 75

Query: 66  LIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDD--RTELKSLLNSNKTSEFS 123
           L F+HPY PT   F P +E   PD++ATS D LRLW I DD  R ELKS LNSNK SEF 
Sbjct: 76  LSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFC 135

Query: 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASV 183
             +TSFDW   + RR+ T S DTTC IWDI+RE ++TQL+AHD+EV+DI+WGG  VFASV
Sbjct: 136 GPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASV 195

Query: 184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243
           S D SVRVFDLRDKE STIIYE+   D PL+RL WNK DPR+MAT+ MDS KVVVLDIRF
Sbjct: 196 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 255

Query: 244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP 303
           P  PVV L +H+ SVN I+WAP     +C+  DDS+ALIW++   G     G     ++P
Sbjct: 256 PALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHVEGG-----LDP 310

Query: 304 ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
            L Y + AEI  ++WS  + DW+AIAF  KLQ+L+V
Sbjct: 311 ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. May function to delay the expression of the morning genes until dawn approaches.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XGN1|TTG1_ARATH Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1

 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/332 (51%), Positives = 238/332 (71%), Gaps = 12/332 (3%)

Query: 13  TYMAQWPISTVAWS-VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP 71
           TY + +P+  +A+S +R     R+AVGSFLEDY+N+I++++F+ ++        L F+HP
Sbjct: 17  TYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHP 76

Query: 72  YTPTNIAFFPS--EETLNPDIVATSGDSLRLWEIHDDRTELK--SLLNSNKTSEFSSAIT 127
           Y PT + F P       + D++A+SGD LRLWEI++D + ++  S+LN++KTSEF + +T
Sbjct: 77  YPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLT 136

Query: 128 SFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDC 187
           SFDW   + +R+ TCS+DTTC IWDI++ ++ETQL+AHD+EV+DI+WG   VFASVS D 
Sbjct: 137 SFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADG 196

Query: 188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247
           SVR+FDLRDKE STIIYE+P  D PLLRL WNK D R+MAT+ MDSNKVV+LDIR PT P
Sbjct: 197 SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMP 256

Query: 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY 307
           V  L +H+ SVN I+WAP   + +CS  DD++ALIWE+          GP+G ++P   Y
Sbjct: 257 VAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL------PTVAGPNG-IDPMSVY 309

Query: 308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
            + +EIN ++WS  + DWI IAF NK+QLL+V
Sbjct: 310 SAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341

May regulate MYC transcription factors. Involved in epidermal cell fate specification such as trichome and root hair development, seed mucilage production, and anthocyanin biosynthesis by acting at the dihydorflavonol-4-reductase (DFR) step. Together with GL1 and GL3, promotes trichome formation. Activates the transcription of GL2.

Arabidopsis thaliana (taxid: 3702)

>sp|P61963|DCAF7_MOUSE DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1

 Score =  304 bits (779), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 158/352 (44%), Positives = 225/352 (63%), Gaps = 26/352 (7%)

Query: 3   SCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA 62
           S   K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV  + E+S+F  
Sbjct: 2   SLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC 61

Query: 63  DNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEF 122
            N   FDHPY  T + + P  + + PD++ATSGD LR+W + +  T L+ LLN+NK S+F
Sbjct: 62  RN--TFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDF 119

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYD 171
            + +TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYD
Sbjct: 120 CAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYD 179

Query: 172 ISW----GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227
           I++    GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++A
Sbjct: 180 IAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLA 238

Query: 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287
           T+ MD  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++  
Sbjct: 239 TMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI-- 296

Query: 288 PGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                    P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct: 297 ------QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

Involved in craniofacial development. Acts upstream of the EDN1 pathway and is required for formation of the upper jaw equivalent, the palatoquadrate. The activity required for EDN1 pathway function differs between the first and second arches. Associates with DIAPH1 and controls GLI1 transcriptional activity. Could be involved in skin development. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|P61962|DCAF7_HUMAN DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1

 Score =  304 bits (779), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 158/352 (44%), Positives = 225/352 (63%), Gaps = 26/352 (7%)

Query: 3   SCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA 62
           S   K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV  + E+S+F  
Sbjct: 2   SLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC 61

Query: 63  DNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEF 122
            N   FDHPY  T + + P  + + PD++ATSGD LR+W + +  T L+ LLN+NK S+F
Sbjct: 62  RN--TFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDF 119

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYD 171
            + +TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYD
Sbjct: 120 CAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYD 179

Query: 172 ISW----GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227
           I++    GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++A
Sbjct: 180 IAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLA 238

Query: 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287
           T+ MD  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++  
Sbjct: 239 TMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI-- 296

Query: 288 PGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                    P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct: 297 ------QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

Involved in craniofacial development. Acts upstream of the EDN1 pathway and is required for formation of the upper jaw equivalent, the palatoquadrate. The activity required for EDN1 pathway function differs between the first and second arches (By similarity). Associates with DIAPH1 and controls GLI1 transcriptional activity. Could be involved in normal and disease skin development. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q552R1|DCAF7_DICDI DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2

 Score =  300 bits (769), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 158/336 (47%), Positives = 224/336 (66%), Gaps = 15/336 (4%)

Query: 7   KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
           +K  ++TY + W I  ++WS R +R  RLA+GSFLEDY+N+++++  N ET  F      
Sbjct: 2   EKKRIYTYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEV--VC 59

Query: 67  IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDR--TELKSLLNSNKTSEFSS 124
            F+HPY PT   + P + +  PD++AT+GD LRLWE+  ++   +LKSLL +N  SEF +
Sbjct: 60  GFEHPYPPTKCMWIPDKNSNRPDLLATTGDYLRLWEVGSNQRSIKLKSLL-TNVISEFCA 118

Query: 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV 183
            ++SFDW   D   +AT S+DTTC IW+I+    +TQL+AHD+EV+DI++  G ++FASV
Sbjct: 119 PLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASV 178

Query: 184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243
             D S+R+FDLR+ E STIIYE P    PLLRL WNK DP ++AT+  DS KV++LDIR 
Sbjct: 179 GADGSLRMFDLRNLEHSTIIYETP-SFVPLLRLCWNKQDPNYLATIQQDSPKVIILDIRV 237

Query: 244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP 303
           P+ P   L  H+ +VNGISWAP     +C+V+DD +ALIW++        +  P    +P
Sbjct: 238 PSVPAAELVFHKSAVNGISWAPHSSCHICTVSDDKQALIWDL--------SSMPKPIEDP 289

Query: 304 ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
            L Y ++AEIN + WS  + DWIAIAF + LQ+LKV
Sbjct: 290 LLTYNALAEINQLSWSSSQPDWIAIAFSSHLQILKV 325

Dictyostelium discoideum (taxid: 44689)

>sp|Q12523|YP247_YEAST WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL247C PE=1 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 183/410 (44%), Gaps = 90/410 (21%)

Query: 11  VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH 70
           V  Y + +P+  + WS        + +GS+ ED  NK+++++ N      S ++ +  D 
Sbjct: 122 VCEYQSHYPLFGLDWSA----DDYVCLGSYKEDSRNKLQVLHSN---DLLSWESVVDADV 174

Query: 71  PYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELK-----SLLNSNKTSEFSSA 125
            Y  + I + PS+  L P  +AT  DSLR+W +  +  + +     SL   N+    + A
Sbjct: 175 VYPVSKIQWVPSQ--LYPRKLATCSDSLRIWSVSPEERQFQEQINLSLCKYNRQHPANPA 232

Query: 126 -------------ITSFDWAGFDTRRVATCSVDTTCVIWDIDR-EILETQLVAHDREVYD 171
                        ITSFDW   DT  + + S+DTTC++WD+     ++TQL+AHD EV+D
Sbjct: 233 AADDMKVIGTFPPITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFD 292

Query: 172 ISW--GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC----------------PL 213
           + +      +FAS  GD SVRVFDLR    STIIYE P                     L
Sbjct: 293 VRFLTKSTQLFASCGGDGSVRVFDLRSLAHSTIIYEPPSSSVSGATAGTITPSSKGSDAL 352

Query: 214 LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCS 273
           LRLE +  DP  +AT   DSNK+++LD+R P +P++ L  H  SVNGI W P     L S
Sbjct: 353 LRLEPSPYDPNVLATFAADSNKIIILDMRNPESPILNLQGHGSSVNGIKWHPTKRNVLLS 412

Query: 274 VADDSRALIW-------EVVGPGYRSGN------GGPSGDVE------------------ 302
             DD + L W       E+   G +S +        P GD E                  
Sbjct: 413 CGDDCQVLYWDLNSSFMEINAAGSKSPSIHGTSLEDPDGDTEMTDGGAGSGLNEDPLSLN 472

Query: 303 ------------PELCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                       P + Y     EIN + W P   DW       K Q ++V
Sbjct: 473 NNSKQVCKTLETPNMMYANKTQEINNIAWRPQRGDWFGCVSGKKFQNVRV 522

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74763|YBE8_SCHPO Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC17D11.08 PE=1 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 177/388 (45%), Gaps = 63/388 (16%)

Query: 14  YMAQWPISTVAWSVRHDRKSR-LAVGSFLEDYSNKIELVNF--NPETSDFSADNRLIFDH 70
           Y A W    + W  +    S  +A+GS  E+ +N I+L+      + +      +   D 
Sbjct: 47  YNAPWIPFALDWLKQGKYSSEWIAMGSLNEEPNNMIQLLKLITGDDGNSHLEKAQAATDL 106

Query: 71  PYTPTNIAFFPSEETLNPD--IVATSGDSLRLWEIH-----DDRTELKSLLNSNKTSEFS 123
            Y  T + + PS    N D  ++A++   LRLW+       D     ++ L+++  +  +
Sbjct: 107 EYPVTKLLWNPSSVGSNTDSQLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNN 166

Query: 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW--GGFNVFA 181
           + +TSFDW   D   +   S+DTTC +WDI  +  +TQL+AHD+EVYD+++     NVF 
Sbjct: 167 APLTSFDWCKTDPSYIVVSSLDTTCTVWDIVAQQSKTQLIAHDKEVYDVAFLKDSINVFV 226

Query: 182 SVSGDCSVRVFDLRDKERSTIIYE---------------NPVQDCPLLRLEWNKADPRFM 226
           SV  D SVR+FDLR  + STIIYE               +P    PLLRL    +D   M
Sbjct: 227 SVGADGSVRMFDLRSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLM 286

Query: 227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286
           AT   +S+ V ++DIR P      L  H+G VN + W P    +L +  DD    +W++ 
Sbjct: 287 ATFHHNSSDVQMIDIRVPGTAYATLRGHKGDVNAVKWMPGSKSKLATCGDDCVVSLWDLD 346

Query: 287 GP------------GYRSGNGGPSGD-----------------------VEPELCYQSMA 311
            P            G   G  G + +                         P L ++   
Sbjct: 347 QPVNPSPAPTLSVSGTTPGMTGSTSEYVTPVSSVNSMRETASPLNADNQYSPLLSWKLEH 406

Query: 312 EINVVRWSPLELDWIAIAFVNKLQLLKV 339
           E+N + WS ++ D +A+ +   L++LKV
Sbjct: 407 EVNNLSWS-VKNDGLAVVYGKSLEILKV 433

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q75C99|HAT2_ASHGO Histone acetyltransferase type B subunit 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HAT2 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 141 TCSVDTTCVIWDIDR-EILETQLVAHDREVYDISWGGF--NVFASVSGDCSVRVFDLRDK 197
           + S DTT  +WDI+  +  ++ L +HD  V D+ W  F  NVF +VS D +++V D R  
Sbjct: 204 SGSDDTTVALWDIEAAKKPKSILTSHDDIVNDVKWHEFESNVFGTVSEDKTLQVHDKR-- 261

Query: 198 ERSTIIYENPVQDCPLLR----LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK 253
                +   PV+  P       L ++K     +A  G+DS ++ + D+R  ++P+ V+S 
Sbjct: 262 -----VRLEPVKKLPTASPFNTLSFSKHSRNLLAAAGVDS-QIYLYDMRDMSSPLHVMSG 315

Query: 254 HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306
           H+ SV  + ++P     +CS   D RA+IW++   G        + D  PEL 
Sbjct: 316 HQDSVTTVEFSPHTDGIICSSGSDRRAIIWDLTQIGAEQSQDD-ADDGAPELM 367

Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q9XF57|PEX7_ARATH Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana GN=PEX7 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFN 178
           E +  + S D+         T S D T  +W +DR         H   VY   W     +
Sbjct: 104 EHAREVQSVDYNPTRRDSFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGD 163

Query: 179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238
           VFAS SGDC++R++D+R+   + II   P  D  +L  +WNK D   +AT  +D   V V
Sbjct: 164 VFASASGDCTLRIWDVREPGSTMII---PAHDFEILSCDWNKYDDCILATSSVDKT-VKV 219

Query: 239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284
            D+R    P+ VL+ H  +V  + ++P     + S + D    +W+
Sbjct: 220 WDVRSYRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDMSVCLWD 265

Import receptor for peroxisomal-targeting signal two (PTS2). A receptor-cargo complex composed of PEX5, PEX7, a PTS1-containing protein and a PTS2-containing protein is targeted to peroxisomes during import.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
73761707	337	TTG1-like protein [Gossypium hirsutum]	0.994	1.0	0.755	1e-151
224088485	342	predicted protein [Populus trichocarpa]	1.0	0.991	0.733	1e-148
401782374	335	WD protein AN11 homolog [Rosa hybrid cul	0.988	1.0	0.734	1e-148
255579383	349	WD-repeat protein, putative [Ricinus com	0.994	0.965	0.716	1e-144
225440811	335	PREDICTED: WD repeat-containing protein	0.988	1.0	0.725	1e-143
147787498	335	hypothetical protein VITISV_035207 [Viti	0.988	1.0	0.722	1e-142
224138438	338	predicted protein [Populus trichocarpa]	0.991	0.994	0.683	1e-136
297740151	313	unnamed protein product [Vitis vinifera]	0.923	1.0	0.678	1e-129
168029600	335	predicted protein [Physcomitrella patens	0.970	0.982	0.556	1e-107
302754272	337	hypothetical protein SELMODRAFT_270223 [	0.964	0.970	0.550	1e-106

>gi|73761707|gb|AAZ83353.1| TTG1-like protein [Gossypium hirsutum]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/339 (75%), Positives = 295/339 (87%), Gaps = 2/339 (0%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           MQ  +E+K GV+TY+ QWPI +VAWSVR+D++SRLA+GSFLEDYSNK+ELV FN  TSDF
Sbjct: 1   MQIPTERKTGVYTYIGQWPIYSVAWSVRNDKRSRLAIGSFLEDYSNKVELVQFNLYTSDF 60

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           + DNRL+FDHPY PTN+ FFPSE+T NPD++ATSGD LRLWEIHDD  ELKSLLN NK+S
Sbjct: 61  TTDNRLVFDHPYAPTNLMFFPSEDTSNPDMIATSGDYLRLWEIHDDHIELKSLLNGNKSS 120

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           EFSSAITSFDWA FDTRRVAT SVDTTC IWDI+RE ++TQLVAHD+EV+DISWGGFNVF
Sbjct: 121 EFSSAITSFDWADFDTRRVATSSVDTTCTIWDIEREAVDTQLVAHDKEVFDISWGGFNVF 180

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           ASVSGD SVRVFDLRDKERSTIIYENP+ + PLLR+EWNKADPRFMATVGMDSNK+V++D
Sbjct: 181 ASVSGDGSVRVFDLRDKERSTIIYENPIPETPLLRVEWNKADPRFMATVGMDSNKIVIVD 240

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300
           IRFPT P++ L +H+GSVN ISWAPL G++LCS  DDSRALIWEVVG  YR+ NG     
Sbjct: 241 IRFPTTPLMELCRHKGSVNAISWAPLMGKQLCSAGDDSRALIWEVVGSNYRAENG--VAV 298

Query: 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           +EPE+ Y S AEIN  RWSP+ELDWIAI F+NKLQLLKV
Sbjct: 299 MEPEMWYGSAAEINHARWSPIELDWIAIVFLNKLQLLKV 337

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088485|ref|XP_002308459.1| predicted protein [Populus trichocarpa] gi|222854435|gb|EEE91982.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/342 (73%), Positives = 295/342 (86%), Gaps = 3/342 (0%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           MQS SEK+PG++TY+AQWPI ++AWSVR D+KSRLA+GSFLEDYSNK+E+V FN +TSDF
Sbjct: 1   MQSSSEKRPGIYTYIAQWPIYSLAWSVRQDKKSRLAIGSFLEDYSNKVEIVQFNRDTSDF 60

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           + D+RLIFDHPY+PTN+ FFPSE+  NPDI+ATSGD LR+W+IHDDR ELKSLLN NK+S
Sbjct: 61  TTDSRLIFDHPYSPTNLMFFPSEDAANPDIIATSGDYLRIWQIHDDRIELKSLLNGNKSS 120

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           EFSSAITSFDWA FD  RVAT SVDTTCVIWDI++E+++ QLVAHD+EV+DISWG FN+F
Sbjct: 121 EFSSAITSFDWADFDVHRVATSSVDTTCVIWDIEKEVIDAQLVAHDKEVFDISWGSFNIF 180

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           ASVSGD SVRVFDLR+K+RSTIIYEN +QDCPLLRLEWNK DPRF+ATVGMDSNKVV+LD
Sbjct: 181 ASVSGDGSVRVFDLRNKDRSTIIYENTMQDCPLLRLEWNKRDPRFIATVGMDSNKVVILD 240

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG-PGYRS--GNGGP 297
           IRFPT P++ L KH+ SVN ISW+P  GR++CSV DDSRAL+WEVV   G R      G 
Sbjct: 241 IRFPTTPLMELCKHKASVNAISWSPCTGRQICSVGDDSRALLWEVVSKAGVRPEYSGAGA 300

Query: 298 SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           +  VEPE+ Y SMA IN VRWSP+ELDWIAIAF +KLQLLKV
Sbjct: 301 NSQVEPEMWYGSMAAINNVRWSPVELDWIAIAFFSKLQLLKV 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|401782374|dbj|BAM36704.1| WD protein AN11 homolog [Rosa hybrid cultivar]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/339 (73%), Positives = 289/339 (85%), Gaps = 4/339 (1%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           MQS +EKKPGV+TY++QWPI ++AWSVR D+ SRLA+GSF+E+YSNK+ELV FNP TSDF
Sbjct: 1   MQSPAEKKPGVYTYVSQWPIYSLAWSVRQDKPSRLAIGSFIEEYSNKVELVQFNPSTSDF 60

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           + DNRLIFDHPY PTNI FFPS    NPD++ATSGD LR+WEIHDDR EL+SLLN N +S
Sbjct: 61  TTDNRLIFDHPYAPTNIMFFPSGAATNPDLIATSGDYLRIWEIHDDRIELRSLLNGNMSS 120

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           EF+SAITSFDWA FDTRRVAT SVDTTC IWDI+RE ++TQLVAHD+EVYDISWGGFNVF
Sbjct: 121 EFNSAITSFDWAEFDTRRVATSSVDTTCTIWDIEREAVDTQLVAHDKEVYDISWGGFNVF 180

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           AS SGD +VR+FDLRDKERSTI+YENP QD  LLRLEWNK DPRF+ATVGMDSN+VV+LD
Sbjct: 181 ASASGDGTVRIFDLRDKERSTIVYENPAQDGSLLRLEWNKQDPRFIATVGMDSNRVVILD 240

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300
           IRFPT P++ L KH  SVN ISW+P  G +LCSV+DDSRA+IWEVV    RSG G    D
Sbjct: 241 IRFPTAPLMELKKHGASVNAISWSPRMGHQLCSVSDDSRAMIWEVV----RSGFGSDGAD 296

Query: 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           +EPE+ Y   A+IN VRWSP+ELDW+AIAF+NKLQLLKV
Sbjct: 297 MEPEMWYGVTAQINQVRWSPVELDWVAIAFLNKLQLLKV 335

Source: Rosa hybrid cultivar

Species: Rosa hybrid cultivar

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579383|ref|XP_002530536.1| WD-repeat protein, putative [Ricinus communis] gi|223529940|gb|EEF31868.1| WD-repeat protein, putative [Ricinus communis]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/339 (71%), Positives = 288/339 (84%), Gaps = 2/339 (0%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           MQS S+ + GVHTYMAQWPI  +AWSVRHD+K RLA+GSFLEDYSNK+ELV F+ +T +F
Sbjct: 13  MQSPSDTRVGVHTYMAQWPIYALAWSVRHDQKYRLAIGSFLEDYSNKVELVQFDIDTCNF 72

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           + D RLIFDHPY PTN+ FFPSE+  NPD+VATSGD LRLW+I+DDR ELK+  + NK+S
Sbjct: 73  TTDARLIFDHPYAPTNVMFFPSEDGANPDVVATSGDYLRLWQIYDDRIELKAFFSGNKSS 132

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           +F SAITSFDWA FD RRVAT SVD TC IWDI++E ++ QLVAHD+EVYDISWGG+NVF
Sbjct: 133 DFCSAITSFDWADFDVRRVATASVDMTCTIWDIEKETIDAQLVAHDKEVYDISWGGYNVF 192

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           ASVSGD SVRVFDLRDKERSTIIYENP+QDCPLLRLEWNK+DPR +AT+GMDSNKVV+LD
Sbjct: 193 ASVSGDGSVRVFDLRDKERSTIIYENPIQDCPLLRLEWNKSDPRLVATIGMDSNKVVILD 252

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300
           IRFPT P++ L KH+ SVN +SWAP+ GR++ SV DD +ALIWEV+  G    NGG  GD
Sbjct: 253 IRFPTTPLMELCKHKASVNAVSWAPVTGRQITSVGDDCKALIWEVLNTGQPLQNGG--GD 310

Query: 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           +EP++ Y SMAEIN VRWSP+ELDWIAIA +NKLQLL+V
Sbjct: 311 MEPDMWYGSMAEINNVRWSPVELDWIAIASMNKLQLLRV 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440811|ref|XP_002281909.1| PREDICTED: WD repeat-containing protein LWD1 [Vitis vinifera]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/339 (72%), Positives = 283/339 (83%), Gaps = 4/339 (1%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           MQS  EKKPGV+TYMAQWPI ++AWSVR D+KSRLAVGSFLEDYSNK+E+V F+ ET DF
Sbjct: 1   MQSPVEKKPGVYTYMAQWPIYSLAWSVRRDKKSRLAVGSFLEDYSNKVEVVQFSQETLDF 60

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           S D+RL+FDHPY PT + FFPSEE +NPD++ATSGD LRLWEIHDDR ELK+LLN NK S
Sbjct: 61  STDSRLVFDHPYAPTKLMFFPSEEAMNPDLIATSGDYLRLWEIHDDRIELKALLNGNK-S 119

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           EF+SAITSFDWA  D RR+ATCSVDTTC IWD++R  ++TQLVAHD+EV+DISWGG  +F
Sbjct: 120 EFNSAITSFDWAQLDARRIATCSVDTTCTIWDVERAAVDTQLVAHDKEVFDISWGGVGIF 179

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           ASVSGD S R+FDLRDKERSTIIYENP+ D PLLRLEWNK DP+ +ATVGMDSNKVV+LD
Sbjct: 180 ASVSGDGSARIFDLRDKERSTIIYENPIPDSPLLRLEWNKGDPKLIATVGMDSNKVVILD 239

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300
           IRFPT P++ L KHE SVN ISWAP  GR LCSV DDSRALIW+V   G+R      + +
Sbjct: 240 IRFPTTPILELRKHETSVNAISWAPHVGRHLCSVGDDSRALIWDVASHGFRL---DATDE 296

Query: 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           VEP + Y S AEIN  RWSP++LDWIAIAF NKLQLLKV
Sbjct: 297 VEPIMWYGSTAEINQARWSPVDLDWIAIAFSNKLQLLKV 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787498|emb|CAN66600.1| hypothetical protein VITISV_035207 [Vitis vinifera]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/339 (72%), Positives = 282/339 (83%), Gaps = 4/339 (1%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           MQS  EKKPGV+TYMAQWPI ++AWSVR D+KSRLAVGSFLEDYSNK+E+V F+ ET DF
Sbjct: 1   MQSPVEKKPGVYTYMAQWPIYSLAWSVRRDKKSRLAVGSFLEDYSNKVEVVQFSQETLDF 60

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           S D+RL+FDHPY PT + FFPSEE +NPD++ATSGD LRLWEIHDDR ELK+LLN NK S
Sbjct: 61  STDSRLVFDHPYAPTKLMFFPSEEAMNPDLIATSGDYLRLWEIHDDRIELKALLNGNK-S 119

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           EF+SAITSFDWA  D RR+ATCSVDTTC IWD++R  ++TQLVAHD+EV+DISWGG  +F
Sbjct: 120 EFNSAITSFDWAQLDARRIATCSVDTTCTIWDVERAAVDTQLVAHDKEVFDISWGGVGIF 179

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           ASVSGD S R+FDLRDKERSTIIYENP+ D PLLRLEWNK DP+ +ATVGMDSNKVV+LD
Sbjct: 180 ASVSGDGSARIFDLRDKERSTIIYENPIPDSPLLRLEWNKGDPKLIATVGMDSNKVVILD 239

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300
           IRFPT P++ L KHE SVN ISWAP  GR LCSV DDSRALIW+V   G+R      + +
Sbjct: 240 IRFPTTPILELRKHETSVNAISWAPHVGRHLCSVGDDSRALIWDVASHGFRL---DATDE 296

Query: 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           VEP + Y S AEIN  RWS ++LDWIAIAF NKLQLLKV
Sbjct: 297 VEPIMWYGSTAEINQARWSXVDLDWIAIAFSNKLQLLKV 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138438|ref|XP_002322814.1| predicted protein [Populus trichocarpa] gi|222867444|gb|EEF04575.1| predicted protein [Populus trichocarpa]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/341 (68%), Positives = 284/341 (83%), Gaps = 5/341 (1%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           M+S S+K P + TY+AQWPI ++AWS R D+K+RLA+GSFLEDYSNK+E+V FN +TSDF
Sbjct: 1   MESSSQKGPVICTYVAQWPIYSLAWSARRDKKTRLAIGSFLEDYSNKVEIVQFNSDTSDF 60

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           + D+RLIFDHPY+PTN+ FFPSE+  NPDI+ TSGD +R+W+I+DDR ELKSLLN NK S
Sbjct: 61  TTDSRLIFDHPYSPTNLMFFPSEDVANPDIIITSGDYMRIWQIYDDRIELKSLLNGNKCS 120

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           EF+SAITSFDWA FD  RV + SVD+T V+WDI++E +  QLVAHD+EV DISWG FN+F
Sbjct: 121 EFNSAITSFDWADFDVHRVVSSSVDSTIVVWDIEKETIYAQLVAHDKEVNDISWGWFNIF 180

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           ASVSGD SVRV DLR KERSTIIYENP+QDC LLRLEWNK+DPRF+ATVGM+SNKVV+LD
Sbjct: 181 ASVSGDGSVRVCDLRKKERSTIIYENPMQDCSLLRLEWNKSDPRFIATVGMNSNKVVILD 240

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG--GPS 298
           IRFP+ P++ LSKH  SVN ISWAP  GR++CSV DDSRALIW+V     ++GNG    +
Sbjct: 241 IRFPSTPLMELSKHRASVNSISWAPCTGRKICSVGDDSRALIWDVAS---KAGNGPENIT 297

Query: 299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           G VEPE+ Y S+  IN +RWSP+E+DWIAIAF+ KLQLLKV
Sbjct: 298 GQVEPEMWYGSVGGINNMRWSPVEMDWIAIAFLTKLQLLKV 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740151|emb|CBI30333.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/339 (67%), Positives = 265/339 (78%), Gaps = 26/339 (7%)

Query: 1   MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF 60
           MQS  EKKPGV+TYMAQWPI ++AWSVR D+KSRLAVGSFLEDYSNK+E+V F+ ET DF
Sbjct: 1   MQSPVEKKPGVYTYMAQWPIYSLAWSVRRDKKSRLAVGSFLEDYSNKVEVVQFSQETLDF 60

Query: 61  SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTS 120
           S D+RL+FDHPY PT + FFPSEE +NPD++ATSGD LRLWEIHDDR ELK+LLN NK S
Sbjct: 61  STDSRLVFDHPYAPTKLMFFPSEEAMNPDLIATSGDYLRLWEIHDDRIELKALLNGNK-S 119

Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
           EF+SAITSFDWA                      +  ++TQLVAHD+EV+DISWGG  +F
Sbjct: 120 EFNSAITSFDWA----------------------QAAVDTQLVAHDKEVFDISWGGVGIF 157

Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240
           ASVSGD S R+FDLRDKERSTIIYENP+ D PLLRLEWNK DP+ +ATVGMDSNKVV+LD
Sbjct: 158 ASVSGDGSARIFDLRDKERSTIIYENPIPDSPLLRLEWNKGDPKLIATVGMDSNKVVILD 217

Query: 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300
           IRFPT P++ L KHE SVN ISWAP  GR LCSV DDSRALIW+V   G+R      + +
Sbjct: 218 IRFPTTPILELRKHETSVNAISWAPHVGRHLCSVGDDSRALIWDVASHGFRL---DATDE 274

Query: 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
           VEP + Y S AEIN  RWSP++LDWIAIAF NKLQLLKV
Sbjct: 275 VEPIMWYGSTAEINQARWSPVDLDWIAIAFSNKLQLLKV 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168029600|ref|XP_001767313.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681377|gb|EDQ67804.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/334 (55%), Positives = 246/334 (73%), Gaps = 5/334 (1%)

Query: 6   EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR 65
           +++  ++TY A WPI  + WSVR D+  RLA+GSFLED+ NK+E+V  + ET DF AD +
Sbjct: 7   QRRSEIYTYEAPWPIYGMNWSVRKDKHMRLAIGSFLEDHRNKVEIVQLDDETCDFKADPK 66

Query: 66  LIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSA 125
           L FDHPY  T I F P +E   PD++AT+GD LR+W+IHDD+ E KSLLN+NK SE+ + 
Sbjct: 67  LSFDHPYPTTKIMFIPDKECQKPDLLATTGDYLRIWQIHDDKVESKSLLNNNKYSEYCAP 126

Query: 126 ITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSG 185
           +TSFDW   + +R+ T S+DTTC IWDI++E+++TQL+AHD+EVYDI+WGG  VFASVS 
Sbjct: 127 LTSFDWNEAEPKRLGTSSIDTTCTIWDIEKEVVDTQLIAHDKEVYDIAWGGAGVFASVSA 186

Query: 186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245
           D SVRVFDLRDKE STIIYE+   D PLLRL WNK DPR+MAT+ MDS+KVVVLDIR PT
Sbjct: 187 DGSVRVFDLRDKEHSTIIYESTQPDTPLLRLGWNKQDPRYMATILMDSSKVVVLDIRVPT 246

Query: 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305
            PV  L +H+  VN ++WAP     +C+  DDS+ALIW++      S +    G+++P L
Sbjct: 247 VPVAELQRHQACVNSVAWAPHSPCHICTAGDDSQALIWDL-----SSISQPVEGNLDPIL 301

Query: 306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
            Y + AEIN ++WS  + DW+AIAF  KLQ+L+V
Sbjct: 302 AYTAGAEINQLQWSSTQPDWVAIAFSTKLQILRV 335

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302754272|ref|XP_002960560.1| hypothetical protein SELMODRAFT_270223 [Selaginella moellendorffii] gi|300171499|gb|EFJ38099.1| hypothetical protein SELMODRAFT_270223 [Selaginella moellendorffii]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/334 (55%), Positives = 244/334 (73%), Gaps = 7/334 (2%)

Query: 7   KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
           K+  ++TY A WPI  + WSVR D + RL +GSF+EDY N +++V  + E + F AD+RL
Sbjct: 10  KRAEIYTYDANWPIYAMNWSVRKDSQFRLGIGSFVEDYRNTVQIVQLDDEKNKFVADSRL 69

Query: 67  IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
            F+HPY  T + F P +E   PD+VATSGD LR+W++ +D+ ELKSLLN+NK SEF + +
Sbjct: 70  CFEHPYPTTKLMFIPDKECQRPDLVATSGDFLRIWQVGEDKVELKSLLNNNKNSEFCAPL 129

Query: 127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGD 186
           TSFDW   + +RV T S+DTTC IWDI++E+++TQL+AHD+EV DI+WGG  VFASVS D
Sbjct: 130 TSFDWNELEPKRVGTSSIDTTCTIWDIEKEVVDTQLIAHDKEVNDIAWGGVGVFASVSAD 189

Query: 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246
            SVRVFDLRDKE STIIYE+P  D PLLRL WNK DPR+MAT+ MDS KVV+LDIR PT 
Sbjct: 190 GSVRVFDLRDKEHSTIIYESPQPDTPLLRLGWNKQDPRYMATIFMDSVKVVILDIRLPTL 249

Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP-SGDVEPEL 305
           PV  L +H+G+VN I+WAP     +C+  DDS+ALIW++      S    P  G ++P L
Sbjct: 250 PVAELQRHQGTVNAIAWAPHSSCHICTAGDDSQALIWDL------SNMSQPIDGGLDPIL 303

Query: 306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
            Y + AEIN ++WS  + DW+AIAF +KL++L+V
Sbjct: 304 AYTAKAEINQLQWSSSQTDWVAIAFASKLEILRV 337

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TAIR|locus:2090792	346	LWD2 "AT3G26640" [Arabidopsis	0.967	0.947	0.543	1.1e-96
TAIR|locus:2010356	346	ATAN11 "AT1G12910" [Arabidopsi	0.970	0.950	0.547	2.9e-96
TAIR|locus:2153914	341	TTG1 "AT5G24520" [Arabidopsis	0.970	0.964	0.511	2.2e-89
ZFIN|ZDB-GENE-030131-9511	342	dcaf7 "ddb1 and cul4 associate	0.949	0.941	0.456	1.4e-78
DICTYBASE|DDB_G0275925	325	wdr68 "WD40 repeat-containing	0.946	0.987	0.480	1e-77
UNIPROTKB|Q5ZIT1	342	DCAF7 "Uncharacterized protein	0.949	0.941	0.451	2.1e-77
UNIPROTKB|Q32L87	342	WDR68 "WD repeat domain 68" [B	0.949	0.941	0.451	2.1e-77
UNIPROTKB|E2REP1	342	DCAF7 "Uncharacterized protein	0.949	0.941	0.451	2.1e-77
UNIPROTKB|P61962	342	DCAF7 "DDB1- and CUL4-associat	0.949	0.941	0.451	2.1e-77
UNIPROTKB|F2Z564	342	DCAF7 "Uncharacterized protein	0.949	0.941	0.451	2.1e-77

TAIR|locus:2090792 LWD2 "AT3G26640" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 182/335 (54%), Positives = 234/335 (69%)

Query:     7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
             K+  ++TY A W I  + WS+R D+K RLA+ S +E Y N++E+V  +    +  +D  L
Sbjct:    17 KRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNL 76

Query:    67 IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDD--RTELKSLLNSNKTSEFSS 124
              F+HPY PT  +F P +E   PD++ATS D LRLW I DD  R ELKS L+S+K SEFS 
Sbjct:    77 CFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSG 136

Query:   125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVS 184
              ITSFDW   + RR+ T S+DTTC IWDI+RE+++TQL+AHD+EVYDI+WGG  VFASVS
Sbjct:   137 PITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVS 196

Query:   185 GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244
              D SVRVFDLRDKE STIIYE+     PL+RL WNK DPR+MATV M S K+VVLDIRFP
Sbjct:   197 EDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFP 256

Query:   245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304
               PVV L +H+ SVN I+WAP     +CS  DDS+ALIW++   G     GG    ++P 
Sbjct:   257 ALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHV-EGG----LDPI 311

Query:   305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
             L Y + AE+  ++WS  + DW+AIAF NKLQ+L+V
Sbjct:   312 LAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0043153 "entrainment of circadian clock by photoperiod" evidence=IEP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2010356 ATAN11 "AT1G12910" [Arabidopsis thaliana (taxid:3702)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 184/336 (54%), Positives = 232/336 (69%)

Query:     6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR 65
             +K+  ++TY A W I  + WSVR D+K RLA+ S LE Y N++E+V  +    +  +D  
Sbjct:    16 QKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPN 75

Query:    66 LIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDD--RTELKSLLNSNKTSEFS 123
             L F+HPY PT   F P +E   PD++ATS D LRLW I DD  R ELKS LNSNK SEF 
Sbjct:    76 LSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFC 135

Query:   124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASV 183
               +TSFDW   + RR+ T S DTTC IWDI+RE ++TQL+AHD+EV+DI+WGG  VFASV
Sbjct:   136 GPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASV 195

Query:   184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243
             S D SVRVFDLRDKE STIIYE+   D PL+RL WNK DPR+MAT+ MDS KVVVLDIRF
Sbjct:   196 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 255

Query:   244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP 303
             P  PVV L +H+ SVN I+WAP     +C+  DDS+ALIW++   G     GG    ++P
Sbjct:   256 PALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHV-EGG----LDP 310

Query:   304 ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
              L Y + AEI  ++WS  + DW+AIAF  KLQ+L+V
Sbjct:   311 ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=NAS

GO:0043153 "entrainment of circadian clock by photoperiod" evidence=IEP

GO:0048573 "photoperiodism, flowering" evidence=RCA;IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2153914 TTG1 "AT5G24520" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 175/342 (51%), Positives = 243/342 (71%)

Query:     3 SCSEKKPGVHTYMAQWPISTVAWS-VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS 61
             S S  +  V TY + +P+  +A+S +R     R+AVGSFLEDY+N+I++++F+ ++    
Sbjct:     8 SLSRSETAV-TYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVK 66

Query:    62 ADNRLIFDHPYTPTNIAFFPSE--ETLNPDIVATSGDSLRLWEIHDDRTELK--SLLNSN 117
                 L F+HPY PT + F P       + D++A+SGD LRLWEI++D + ++  S+LN++
Sbjct:    67 PLPNLSFEHPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNS 126

Query:   118 KTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGF 177
             KTSEF + +TSFDW   + +R+ TCS+DTTC IWDI++ ++ETQL+AHD+EV+DI+WG  
Sbjct:   127 KTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEA 186

Query:   178 NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237
              VFASVS D SVR+FDLRDKE STIIYE+P  D PLLRL WNK D R+MAT+ MDSNKVV
Sbjct:   187 RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV 246

Query:   238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP 297
             +LDIR PT PV  L +H+ SVN I+WAP   + +CS  DD++ALIWE+  P       GP
Sbjct:   247 ILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL--PTV----AGP 300

Query:   298 SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
             +G ++P   Y + +EIN ++WS  + DWI IAF NK+QLL+V
Sbjct:   301 NG-IDPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0010026 "trichome differentiation" evidence=IMP

GO:0045165 "cell fate commitment" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=RCA;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0009957 "epidermal cell fate specification" evidence=IMP

ZFIN|ZDB-GENE-030131-9511 dcaf7 "ddb1 and cul4 associated factor 7" [Danio rerio (taxid:7955)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 159/348 (45%), Positives = 224/348 (64%)

Query:     7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
             K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV    E+S+F   N  
Sbjct:     6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLEEESSEFVCRNT- 64

Query:    67 IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
              FDHPY  T I + P  + + PD++ATSGD LR+W ++D  T L+ LLN+NK S+F + +
Sbjct:    65 -FDHPYPTTKIMWIPDTKGVYPDLLATSGDYLRIWRVNDTETRLECLLNNNKNSDFCAPL 123

Query:   127 TSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYDISW- 174
             TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYDI++ 
Sbjct:   124 TSFDWNEVDPNLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFS 183

Query:   175 ---GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231
                GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++AT+ M
Sbjct:   184 RAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLATMAM 242

Query:   232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
             D  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++      
Sbjct:   243 DGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI------ 296

Query:   292 SGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                  P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct:   297 --QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

GO:0051216 "cartilage development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA

DICTYBASE|DDB_G0275925 wdr68 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 162/337 (48%), Positives = 225/337 (66%)

Query:     6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR 65
             EKK  ++TY + W I  ++WS R +R  RLA+GSFLEDY+N+++++  N ET  F     
Sbjct:     2 EKKR-IYTYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEVVCG 60

Query:    66 LIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRT--ELKSLLNSNKTSEFS 123
               F+HPY PT   + P + +  PD++AT+GD LRLWE+  ++   +LKSLL +N  SEF 
Sbjct:    61 --FEHPYPPTKCMWIPDKNSNRPDLLATTGDYLRLWEVGSNQRSIKLKSLL-TNVISEFC 117

Query:   124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFAS 182
             + ++SFDW   D   +AT S+DTTC IW+I+    +TQL+AHD+EV+DI++  G ++FAS
Sbjct:   118 APLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFAS 177

Query:   183 VSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242
             V  D S+R+FDLR+ E STIIYE P    PLLRL WNK DP ++AT+  DS KV++LDIR
Sbjct:   178 VGADGSLRMFDLRNLEHSTIIYETP-SFVPLLRLCWNKQDPNYLATIQQDSPKVIILDIR 236

Query:   243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302
              P+ P   L  H+ +VNGISWAP     +C+V+DD +ALIW++      S    P  D  
Sbjct:   237 VPSVPAAELVFHKSAVNGISWAPHSSCHICTVSDDKQALIWDL------SSMPKPIED-- 288

Query:   303 PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
             P L Y ++AEIN + WS  + DWIAIAF + LQ+LKV
Sbjct:   289 PLLTYNALAEINQLSWSSSQPDWIAIAFSSHLQILKV 325

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZIT1 DCAF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 157/348 (45%), Positives = 224/348 (64%)

Query:     7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
             K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV  + E+S+F   N  
Sbjct:     6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT- 64

Query:    67 IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
              FDHPY  T + + P  + + PD++ATSGD LR+W + +  T L+ LLN+NK S+F + +
Sbjct:    65 -FDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPL 123

Query:   127 TSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYDISW- 174
             TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYDI++ 
Sbjct:   124 TSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFS 183

Query:   175 ---GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231
                GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++AT+ M
Sbjct:   184 RAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLATMAM 242

Query:   232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
             D  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++      
Sbjct:   243 DGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI------ 296

Query:   292 SGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                  P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct:   297 --QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q32L87 WDR68 "WD repeat domain 68" [Bos taurus (taxid:9913)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 157/348 (45%), Positives = 224/348 (64%)

Query:     7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
             K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV  + E+S+F   N  
Sbjct:     6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT- 64

Query:    67 IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
              FDHPY  T + + P  + + PD++ATSGD LR+W + +  T L+ LLN+NK S+F + +
Sbjct:    65 -FDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPL 123

Query:   127 TSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYDISW- 174
             TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYDI++ 
Sbjct:   124 TSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFS 183

Query:   175 ---GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231
                GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++AT+ M
Sbjct:   184 RAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLATMAM 242

Query:   232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
             D  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++      
Sbjct:   243 DGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI------ 296

Query:   292 SGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                  P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct:   297 --QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2REP1 DCAF7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 157/348 (45%), Positives = 224/348 (64%)

Query:     7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
             K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV  + E+S+F   N  
Sbjct:     6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT- 64

Query:    67 IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
              FDHPY  T + + P  + + PD++ATSGD LR+W + +  T L+ LLN+NK S+F + +
Sbjct:    65 -FDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPL 123

Query:   127 TSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYDISW- 174
             TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYDI++ 
Sbjct:   124 TSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFS 183

Query:   175 ---GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231
                GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++AT+ M
Sbjct:   184 RAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLATMAM 242

Query:   232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
             D  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++      
Sbjct:   243 DGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI------ 296

Query:   292 SGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                  P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct:   297 --QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P61962 DCAF7 "DDB1- and CUL4-associated factor 7" [Homo sapiens (taxid:9606)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 157/348 (45%), Positives = 224/348 (64%)

Query:     7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
             K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV  + E+S+F   N  
Sbjct:     6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT- 64

Query:    67 IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
              FDHPY  T + + P  + + PD++ATSGD LR+W + +  T L+ LLN+NK S+F + +
Sbjct:    65 -FDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPL 123

Query:   127 TSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYDISW- 174
             TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYDI++ 
Sbjct:   124 TSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFS 183

Query:   175 ---GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231
                GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++AT+ M
Sbjct:   184 RAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLATMAM 242

Query:   232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
             D  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++      
Sbjct:   243 DGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI------ 296

Query:   292 SGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                  P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct:   297 --QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z564 DCAF7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 157/348 (45%), Positives = 224/348 (64%)

Query:     7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL 66
             K+  ++ Y A W +  + WSVR D++ RLA+GSF+E+Y+NK++LV  + E+S+F   N  
Sbjct:     6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT- 64

Query:    67 IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
              FDHPY  T + + P  + + PD++ATSGD LR+W + +  T L+ LLN+NK S+F + +
Sbjct:    65 -FDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPL 123

Query:   127 TSFDWAGFDTRRVATCSVDTTCVIWDIDR-EIL----------ETQLVAHDREVYDISW- 174
             TSFDW   D   + T S+DTTC IW ++  ++L          +TQL+AHD+EVYDI++ 
Sbjct:   124 TSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFS 183

Query:   175 ---GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231
                GG ++FASV  D SVR+FDLR  E STIIYE+P Q  PLLRL WNK DP ++AT+ M
Sbjct:   184 RAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP-QHHPLLRLCWNKQDPNYLATMAM 242

Query:   232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
             D  +VV+LD+R P  PV  L+ H   VNGI+WAP     +C+ ADD +ALIW++      
Sbjct:   243 DGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDI------ 296

Query:   292 SGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339
                  P    +P L Y +  EIN V+W+  + DWIAI + N L++L+V
Sbjct:   297 --QQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38960	LWD2_ARATH	No assigned EC number	0.5402	0.9675	0.9479	yes	no
Q552R1	DCAF7_DICDI	No assigned EC number	0.4702	0.9469	0.9876	yes	no
P61962	DCAF7_HUMAN	No assigned EC number	0.4488	0.9616	0.9532	yes	no
P61963	DCAF7_MOUSE	No assigned EC number	0.4488	0.9616	0.9532	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	339
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.002
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.4 bits (173), Expect = 9e-14
 Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 87  NPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144
           +  I+++S    ++++W++ +    L +L         +  + S  ++  D   VA+ S 
Sbjct: 104 DGRILSSSSRDKTIKVWDV-ETGKCLTTL------RGHTDWVNSVAFSP-DGTFVASSSQ 155

Query: 145 DTTCVIWDIDREILETQLVAHDREVYDISW--GGFNVFASVSGDCSVRVFDLRDKERSTI 202
           D T  +WD+        L  H  EV  +++   G  + +S S D +++++DL   +    
Sbjct: 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS-SSDGTIKLWDLSTGK---C 211

Query: 203 IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGIS 262
           +      +  +  + ++  D   +A+   D   + V D+R     V  LS H  SV  ++
Sbjct: 212 LGTLRGHENGVNSVAFSP-DGYLLASGSED-GTIRVWDLR-TGECVQTLSGHTNSVTSLA 268

Query: 263 WAPLYGRRLCSVADDSRALIWE 284
           W+P  G+RL S + D    IW+
Sbjct: 269 WSPD-GKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 53/274 (19%), Positives = 103/274 (37%), Gaps = 43/274 (15%)

Query: 19  PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIA 78
            ++ VA+         LA GS        I++ +   ET +     +    H     ++A
Sbjct: 11  GVTCVAF---SPDGKLLATGS----GDGTIKVWDL--ETGELLRTLKG---HTGPVRDVA 58

Query: 79  FFPSEETLNPDIVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEF---SSAITSFDWAGF 134
                  L     + S D  +RLW++                      +S ++S  ++  
Sbjct: 59  ASADGTYL----ASGSSDKTIRLWDLETGE----------CVRTLTGHTSYVSSVAFSP- 103

Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF-ASVSGDCSVRVFD 193
           D R +++ S D T  +WD++     T L  H   V  +++     F AS S D +++++D
Sbjct: 104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163

Query: 194 LRDKERSTIIY--ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251
           LR  +    +      V             D   + +   D   + + D+      +  L
Sbjct: 164 LRTGKCVATLTGHTGEVNSVAFS------PDGEKLLSSSSDGT-IKLWDLSTGK-CLGTL 215

Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285
             HE  VN ++++P  G  L S ++D    +W++
Sbjct: 216 RGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.6 bits (153), Expect = 3e-11
 Identities = 38/191 (19%), Positives = 83/191 (43%), Gaps = 14/191 (7%)

Query: 97  SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE 156
           +++LW++      +++L         S ++TS  ++       +  S+D T  +WD+   
Sbjct: 135 TVKLWDLSTPGKLIRTLEGH------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188

Query: 157 ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL 214
              + L  H   V  +++   G  + AS S D ++R++DL   +                
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248

Query: 215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV 274
              ++  D   +A+   D   + + D+R  ++ +  LS H  SV  ++++P  G+ L S 
Sbjct: 249 ---FSP-DGSLLASGSSD-GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASG 302

Query: 275 ADDSRALIWEV 285
           + D    +W++
Sbjct: 303 SSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 25/271 (9%)

Query: 18  WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNI 77
             +S +A S   D  S L   S        ++L +     S      R +  H  + T++
Sbjct: 110 SSVSKLALSS-PDGNSILLASS---SLDGTVKLWDL----STPGKLIRTLEGHSESVTSL 161

Query: 78  AFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT 136
           AF P  + L      +S D +++LW+       L +L            ++S  ++    
Sbjct: 162 AFSPDGKLL---ASGSSLDGTIKLWD-LRTGKPLSTLAGHTDP------VSSLAFSPDGG 211

Query: 137 RRVATCSVDTTCVIWDI-DREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLR 195
             +A+ S D T  +WD+   ++L + L  H   V        ++ AS S D ++R++DLR
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR 271

Query: 196 DKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV-LSKH 254
                            +L + ++  D + +A+   D   V + D+        + L  H
Sbjct: 272 SSSSLLRTLSGHSS--SVLSVAFSP-DGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGH 327

Query: 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEV 285
           EG V+ +S++P     +   +DD    +W++
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 77  IAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT 136
           +AF P  E L   + ++S  +++LW++      L +L          + + S  ++  D 
Sbjct: 183 VAFSPDGEKL---LSSSSDGTIKLWDL-STGKCLGTL------RGHENGVNSVAFSP-DG 231

Query: 137 RRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFD 193
             +A+ S D T  +WD+        L  H   V  ++W       AS S D ++R++D
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 3/183 (1%)

Query: 105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164
           +  T  ++     K SE   ++ S       +       +           ++    L  
Sbjct: 4   NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63

Query: 165 HDREVYDISW-GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223
           H+  +  I++     +  S S D +++++DL + E+     E  + D  + +L  +  D 
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSSPDG 122

Query: 224 RFMATVGMDS-NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALI 282
             +          V + D+  P   +  L  H  SV  ++++P         + D    +
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 283 WEV 285
           W++
Sbjct: 183 WDL 185

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 16/186 (8%)

Query: 109 ELKSLLNSNKTSEF-------SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161
           E +S++   +   +        S ++   W  +   +VA+ + +    +WD+ R  L T+
Sbjct: 511 ECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE 570

Query: 162 LVAHDREVY--DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219
           +  H++ V+  D S     + AS S D SV+++ +        I       C    +++ 
Sbjct: 571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICC----VQFP 626

Query: 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR 279
               R +A  G   +KV   D+R P  P+  +  H  +V+ + +       L S + D+ 
Sbjct: 627 SESGRSLA-FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD--SSTLVSSSTDNT 683

Query: 280 ALIWEV 285
             +W++
Sbjct: 684 LKLWDL 689

Length = 793

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 67  IFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
           +  H    ++++F P    L      +   ++RLW++   +          KT E  S +
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLV--SGGSDDGTIRLWDLRTGKPL--------KTLEGHSNV 373

Query: 127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNV-FASVSG 185
            S  ++  D R V++ S D T  +WD+    L   L  H   V  + +       AS S 
Sbjct: 374 LSVSFS-PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432

Query: 186 DCSVRVFDLRDKERS 200
           D ++R++DL+   +S
Sbjct: 433 DNTIRLWDLKTSLKS 447

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0290	364	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0639	705	consensus Transducin-like enhancer of split protei	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0270	463	consensus WD40 repeat-containing protein [Function	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG2055	514	consensus WD40 repeat protein [General function pr	99.98
PTZ00420	568	coronin; Provisional	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.97
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.81
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG2321	703	consensus WD40 repeat protein [General function pr	99.79
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.79
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.78
KOG2139	445	consensus WD40 repeat protein [General function pr	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.69
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG2315	566	consensus Predicted translation initiation factor	99.65
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.64
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.58
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.58
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.57
PRK01029	428	tolB translocation protein TolB; Provisional	99.57
KOG2314	698	consensus Translation initiation factor 3, subunit	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.56
PRK04792	448	tolB translocation protein TolB; Provisional	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
PRK04792	448	tolB translocation protein TolB; Provisional	99.51
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.5
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.48
PRK01029	428	tolB translocation protein TolB; Provisional	99.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.43
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.42
KOG4547	541	consensus WD40 repeat-containing protein [General	99.4
KOG4547	541	consensus WD40 repeat-containing protein [General	99.38
KOG2314	698	consensus Translation initiation factor 3, subunit	99.38
COG4946	668	Uncharacterized protein related to the periplasmic	99.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.34
KOG2315	566	consensus Predicted translation initiation factor	99.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.32
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.32
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.27
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.27
COG4946	668	Uncharacterized protein related to the periplasmic	99.26
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.23
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.22
PRK04043	419	tolB translocation protein TolB; Provisional	99.22
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.16
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.16
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.15
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.14
PRK04043	419	tolB translocation protein TolB; Provisional	99.14
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.11
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.11
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.09
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.08
KOG1008	783	consensus Uncharacterized conserved protein, conta	99.03
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.0
KOG2695	425	consensus WD40 repeat protein [General function pr	98.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.98
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.93
KOG3621	726	consensus WD40 repeat-containing protein [General	98.92
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.9
KOG2695	425	consensus WD40 repeat protein [General function pr	98.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.88
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.83
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.81
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.64
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.63
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.61
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.53
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.51
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.51
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.51
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.5
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.43
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.37
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.29
PRK02888	635	nitrous-oxide reductase; Validated	98.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.19
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.13
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.08
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.05
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.97
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.95
KOG3621	726	consensus WD40 repeat-containing protein [General	97.94
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.94
PRK02888	635	nitrous-oxide reductase; Validated	97.89
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.86
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.86
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.83
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.73
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.69
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.68
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.68
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.58
KOG2444	238	consensus WD40 repeat protein [General function pr	97.54
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.52
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.52
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.49
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.46
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.43
KOG2395	644	consensus Protein involved in vacuole import and d	97.42
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.41
PHA02713	557	hypothetical protein; Provisional	97.4
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.39
PRK13616	591	lipoprotein LpqB; Provisional	97.34
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.34
PHA02713	557	hypothetical protein; Provisional	97.24
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.19
PRK13616	591	lipoprotein LpqB; Provisional	97.17
COG5276	370	Uncharacterized conserved protein [Function unknow	97.15
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.15
KOG2444	238	consensus WD40 repeat protein [General function pr	97.13
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.13
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.09
KOG2377	657	consensus Uncharacterized conserved protein [Funct	97.01
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.01
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.96
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.94
KOG2395	644	consensus Protein involved in vacuole import and d	96.9
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.87
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.81
COG3391	381	Uncharacterized conserved protein [Function unknow	96.8
COG3391	381	Uncharacterized conserved protein [Function unknow	96.8
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.78
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.76
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.72
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.72
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.63
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.61
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.59
PRK13684	334	Ycf48-like protein; Provisional	96.56
PRK10115	686	protease 2; Provisional	96.48
PHA03098	534	kelch-like protein; Provisional	96.46
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.38
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.31
PHA03098	534	kelch-like protein; Provisional	96.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.09
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.06
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.99
COG5276	370	Uncharacterized conserved protein [Function unknow	95.98
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.92
PHA02790	480	Kelch-like protein; Provisional	95.83
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.82
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.81
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.73
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.54
COG5167	776	VID27 Protein involved in vacuole import and degra	95.52
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.5
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.47
PHA02790	480	Kelch-like protein; Provisional	95.43
KOG2247	615	consensus WD40 repeat-containing protein [General	95.19
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.16
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.97
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.87
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.83
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.7
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.69
KOG2247	615	consensus WD40 repeat-containing protein [General	94.57
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.38
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.23
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.1
PRK13684	334	Ycf48-like protein; Provisional	93.74
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.66
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.62
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.61
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.02
PRK10115	686	protease 2; Provisional	92.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.78
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.77
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.62
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.62
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.29
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.2
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.2
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.82
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.72
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.65
COG4590	733	ABC-type uncharacterized transport system, permeas	91.36
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.15
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.98
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.79
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.44
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.17
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.16
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.86
COG5167	776	VID27 Protein involved in vacuole import and degra	89.79
PLN02153	341	epithiospecifier protein	89.53
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.33
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.99
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.87
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.8
PLN02193	470	nitrile-specifier protein	88.4
COG4590	733	ABC-type uncharacterized transport system, permeas	87.64
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	87.41
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.39
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.24
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.64
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.14
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.63
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.54
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.32
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	83.69
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.31
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	82.21
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	82.2
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.2
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	81.99
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.65
PLN02153	341	epithiospecifier protein	80.62
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	80.61
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.41

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-52  Score=328.38  Aligned_cols=285  Identities=24%  Similarity=0.347  Sum_probs=253.2

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|.|++|+|+   +..||+|+    .|.++++||++.++..+..     .+|...|.|++|+||+     +.||+|
T Consensus       113 GH~e~Vl~~~fsp~---g~~l~tGs----GD~TvR~WD~~TeTp~~t~-----KgH~~WVlcvawsPDg-----k~iASG  175 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPT---GSRLVTGS----GDTTVRLWDLDTETPLFTC-----KGHKNWVLCVAWSPDG-----KKIASG  175 (480)
T ss_pred             CCCCcEEEEEecCC---CceEEecC----CCceEEeeccCCCCcceee-----cCCccEEEEEEECCCc-----chhhcc
Confidence            36789999999999   99999999    7999999999988887776     8999999999999999     899999


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC----CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF----DTRRVATCSVDTTCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                      + + +|++||.++++ .....+.+|+     ..|++++|.|.    ...+||+++.||.|+|||+..+.++..+.+|+.+
T Consensus       176 ~~dg~I~lwdpktg~-~~g~~l~gH~-----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQ-QIGRALRGHK-----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             ccCCeEEEecCCCCC-cccccccCcc-----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence            8 4 99999999887 3557889998     99999999873    5679999999999999999999999999999999


Q ss_pred             eeEEEecCCcEEEEEeCCCcEEEEECCCCcceee----------------------------------------------
Q 040307          169 VYDISWGGFNVFASVSGDCSVRVFDLRDKERSTI----------------------------------------------  202 (339)
Q Consensus       169 v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------------------------------  202 (339)
                      |+|++|-...+|++++.|++|++|+...+.....                                              
T Consensus       250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            9999998777999999999999999866421100                                              


Q ss_pred             ---------E-----------E----------eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          203 ---------I-----------Y----------ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       203 ---------~-----------~----------~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                               +           .          ...+|...|+.+.|+| +++++|+++.|.. |++||.++ ++.+.+++
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkS-VkLW~g~t-Gk~lasfR  406 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKS-VKLWDGRT-GKFLASFR  406 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccc-eeeeeCCC-cchhhhhh
Confidence                     0           0          0123667899999999 9999999999999 99999998 78899999


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~  332 (339)
                      +|-+.|+.++|+.|. ++|++|+.|.++++|++++.+            -..-+.+|...|.++.|+|||+.+++++.|.
T Consensus       407 GHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK------------l~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  407 GHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK------------LKQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             hccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee------------ecccCCCCCceEEEEEecCCCceeecCCCce
Confidence            999999999999998 699999999999999999987            2335568999999999999999888999999


Q ss_pred             eEEEEe
Q 040307          333 KLQLLK  338 (339)
Q Consensus       333 ~v~~w~  338 (339)
                      .+++|+
T Consensus       474 v~~lw~  479 (480)
T KOG0271|consen  474 VLRLWR  479 (480)
T ss_pred             EEEeec
Confidence            999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-49  Score=313.32  Aligned_cols=282  Identities=19%  Similarity=0.283  Sum_probs=252.8

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ...||..+.||++   ++.||+|++    +|.++||+...-  ....  ++ .+|...|.++.|+|..+.   .-+|+|+
T Consensus       174 d~rPis~~~fS~d---s~~laT~sw----sG~~kvW~~~~~--~~~~--~l-~gH~~~v~~~~fhP~~~~---~~lat~s  238 (459)
T KOG0272|consen  174 DTRPISGCSFSRD---SKHLATGSW----SGLVKVWSVPQC--NLLQ--TL-RGHTSRVGAAVFHPVDSD---LNLATAS  238 (459)
T ss_pred             CCCcceeeEeecC---CCeEEEeec----CCceeEeecCCc--ceeE--EE-eccccceeeEEEccCCCc---cceeeec
Confidence            4579999999999   999999995    999999665443  3333  44 799999999999998311   6788887


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                       | ++++|++++..  ++..+.+|.     ..|..++|+| +|++|++++.|.+-++||++++..+....+|...|.+++
T Consensus       239 ~Dgtvklw~~~~e~--~l~~l~gH~-----~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia  310 (459)
T KOG0272|consen  239 ADGTVKLWKLSQET--PLQDLEGHL-----ARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA  310 (459)
T ss_pred             cCCceeeeccCCCc--chhhhhcch-----hhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence             5 99999999886  889999998     8999999999 999999999999999999999998888899999999999


Q ss_pred             ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      |+ +|.++++|+.|..-+|||+|++++... ..+  |..+|.+++|+| +|..||+|+.|+. ++|||++. ..++..+.
T Consensus       311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~-L~g--H~k~I~~V~fsP-NGy~lATgs~Dnt-~kVWDLR~-r~~ly~ip  384 (459)
T KOG0272|consen  311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMF-LAG--HIKEILSVAFSP-NGYHLATGSSDNT-CKVWDLRM-RSELYTIP  384 (459)
T ss_pred             ecCCCceeeccCccchhheeecccCcEEEE-ecc--cccceeeEeECC-CceEEeecCCCCc-EEEeeecc-cccceecc
Confidence            99 899999999999999999999985443 444  789999999999 9999999999999 99999998 66799999


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~  332 (339)
                      +|..-|+.|.|+|..+++|+|++.|++++||...+..            ......+|.+.|.+++.+|+++.+++++.|+
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~------------~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS------------PLKSLAGHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCcceeeecCCCcc------------cchhhcCCccceEEEEeccCCceEEEeccCc
Confidence            9999999999999666899999999999999999988            2336679999999999999999999999999


Q ss_pred             eEEEEe
Q 040307          333 KLQLLK  338 (339)
Q Consensus       333 ~v~~w~  338 (339)
                      ++++|.
T Consensus       453 T~KLW~  458 (459)
T KOG0272|consen  453 TIKLWR  458 (459)
T ss_pred             eeeecc
Confidence            999995

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=100.00  E-value=6.4e-45  Score=275.57  Aligned_cols=325  Identities=50%  Similarity=0.915  Sum_probs=290.1

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      .++++++.|..+.+++++.|+...+...+||.|++..++.++|.|..++.+++++...  -.+.|.-+++.+.|.|+..+
T Consensus        33 ~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g  110 (364)
T KOG0290|consen   33 PRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKG  110 (364)
T ss_pred             cccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccc
Confidence            4678899999999999999996655688999999999999999999999888887763  33689999999999999988


Q ss_pred             CCCCeEEEeCCcEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eee
Q 040307           86 LNPDIVATSGDSLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LET  160 (339)
Q Consensus        86 ~~~~~la~~~~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~  160 (339)
                      .+|++||+++|.+|+|.+..  .+..+...+..++...++.+++++.|+..+.++|.+++-|-+..|||++++.   ...
T Consensus       111 ~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT  190 (364)
T KOG0290|consen  111 VYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT  190 (364)
T ss_pred             cCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence            89999999999999999984  4455566777788888899999999998899999999999999999999874   356


Q ss_pred             eeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307          161 QLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV  238 (339)
Q Consensus       161 ~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i  238 (339)
                      ++-+|..+|.+++|.  .-+.|++.+.||.+|+||+|..+....+++.+....+...++|++++.+++|+-..|...|.|
T Consensus       191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence            677899999999999  367999999999999999999999999999877678999999999999999999988888999


Q ss_pred             EecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307          239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW  318 (339)
Q Consensus       239 ~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (339)
                      .|+|.+..++..+++|.+.|++++|.|.....|++++.|..+.+||+......       ....|++.+...+.|+.+.|
T Consensus       271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-------~~~dPilay~a~~EVNqi~W  343 (364)
T KOG0290|consen  271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-------NGEDPILAYTAGGEVNQIQW  343 (364)
T ss_pred             EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc-------CCCCchhhhhccceeeeeee
Confidence            99999999999999999999999999998889999999999999999886611       13457777788889999999


Q ss_pred             cCCCCceEEEecCCeEEEEeC
Q 040307          319 SPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       319 ~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|..+..++.+.++.+.+.+|
T Consensus       344 s~~~~Dwiai~~~kkleiLRV  364 (364)
T KOG0290|consen  344 SSSQPDWIAICFGKKLEILRV  364 (364)
T ss_pred             cccCCCEEEEEecCeeeEEeC
Confidence            999999999999999998875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.9e-44  Score=263.48  Aligned_cols=270  Identities=17%  Similarity=0.217  Sum_probs=235.2

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-CCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-PYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~  109 (339)
                      .-+|++++    +|.+|++  |+..++.+..  .  ..| ...|+.|...|++     +.||+++. .|++||+++....
T Consensus        10 ~viLvsA~----YDhTIRf--Wqa~tG~C~r--T--iqh~dsqVNrLeiTpdk-----~~LAaa~~qhvRlyD~~S~np~   74 (311)
T KOG0315|consen   10 PVILVSAG----YDHTIRF--WQALTGICSR--T--IQHPDSQVNRLEITPDK-----KDLAAAGNQHVRLYDLNSNNPN   74 (311)
T ss_pred             ceEEEecc----Ccceeee--eehhcCeEEE--E--EecCccceeeEEEcCCc-----chhhhccCCeeEEEEccCCCCC
Confidence            55899999    7999999  5555666665  2  344 4679999999999     89999997 9999999998877


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCc
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCS  188 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~  188 (339)
                      ++.++.+|.     ..|+.+.|.. +++.+++|++||+++|||++...+.+.++ |..+|+++..+ +...|++|..+|.
T Consensus        75 Pv~t~e~h~-----kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~  147 (311)
T KOG0315|consen   75 PVATFEGHT-----KNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN  147 (311)
T ss_pred             ceeEEeccC-----CceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence            999999998     8999999996 99999999999999999999977777775 78999999999 6778999999999


Q ss_pred             EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-----CCceEEEecCCCCeeEEEe
Q 040307          189 VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP-----TNPVVVLSKHEGSVNGISW  263 (339)
Q Consensus       189 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~  263 (339)
                      |++||++.......+...  ....+.++...| +|.+++++...|+ .++|++-..     -.|+.+++.|.+.+..+.+
T Consensus       148 irvWDl~~~~c~~~liPe--~~~~i~sl~v~~-dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l  223 (311)
T KOG0315|consen  148 IRVWDLGENSCTHELIPE--DDTSIQSLTVMP-DGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQAHNGHILRCLL  223 (311)
T ss_pred             EEEEEccCCccccccCCC--CCcceeeEEEcC-CCcEEEEecCCcc-EEEEEccCCCccccceEhhheecccceEEEEEE
Confidence            999999998755544433  557899999998 9999999999999 999998652     2577889999999999999


Q ss_pred             ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          264 APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       264 ~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ||++ ++||+++.|.+++||+.+...           .-...+.+|+..+.+.+||.+++||++++.|+.+|+|++
T Consensus       224 SPd~-k~lat~ssdktv~iwn~~~~~-----------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  224 SPDV-KYLATCSSDKTVKIWNTDDFF-----------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             CCCC-cEEEeecCCceEEEEecCCce-----------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            9999 799999999999999999873           012456689999999999999999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-44  Score=280.21  Aligned_cols=240  Identities=19%  Similarity=0.290  Sum_probs=208.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.++|.|++|+|++     ..||+|++  ++++||+.+..  +..+.++|.     .-|.+++|+| |++.||+|+.|
T Consensus       112 ~GH~e~Vl~~~fsp~g-----~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~-----~WVlcvawsP-Dgk~iASG~~d  178 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTG-----SRLVTGSGDTTVRLWDLDTET--PLFTCKGHK-----NWVLCVAWSP-DGKKIASGSKD  178 (480)
T ss_pred             CCCCCcEEEEEecCCC-----ceEEecCCCceEEeeccCCCC--cceeecCCc-----cEEEEEEECC-CcchhhccccC
Confidence            5899999999999999     89999984  99999999987  899999999     8999999999 99999999999


Q ss_pred             CeEEEEECCCCeee-eeeeccCCceeEEEecC------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307          146 TTCVIWDIDREILE-TQLVAHDREVYDISWGG------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       146 ~~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  218 (339)
                      |.|++||.++++++ ..+.+|...|++++|.|      ..+|++++.||.++|||+..+.....+   .+|..+|+|+.|
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---sgHT~~VTCvrw  255 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---SGHTASVTCVRW  255 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe---ccCccceEEEEE
Confidence            99999999988754 67899999999999973      678999999999999999987743332   237788888888


Q ss_pred             ecCCCCeEEEEeeCCCeEEEEecCCC------------------------------------------------------
Q 040307          219 NKADPRFMATVGMDSNKVVVLDIRFP------------------------------------------------------  244 (339)
Q Consensus       219 ~p~~~~~l~~~~~d~~~i~i~d~~~~------------------------------------------------------  244 (339)
                      -  ...+|++|+.|++ |++|+...+                                                      
T Consensus       256 G--G~gliySgS~Drt-Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~  332 (480)
T KOG0271|consen  256 G--GEGLIYSGSQDRT-IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL  332 (480)
T ss_pred             c--CCceEEecCCCce-EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence            5  4567777777777 777776541                                                      


Q ss_pred             ------------------------CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          245 ------------------------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       245 ------------------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                                              .+|+..+.+|..-|+.+.||||+ +++|+++.|..|++|+.++++           
T Consensus       333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk-----------  400 (480)
T KOG0271|consen  333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK-----------  400 (480)
T ss_pred             ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc-----------
Confidence                                    24566778899999999999999 799999999999999999998           


Q ss_pred             ccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                       ..-.+.+|-+.|+.++|+.|.+.|++++.|.++++|+|
T Consensus       401 -~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  401 -FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             -hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence             22355679999999999999998999999999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9e-42  Score=258.62  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=240.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|...|+++.|++|   .++|++++    .||.+.|||--........     .-....|...+|+|.+     .++|+|
T Consensus        53 GH~~Ki~~~~ws~D---sr~ivSaS----qDGklIvWDs~TtnK~hai-----pl~s~WVMtCA~sPSg-----~~VAcG  115 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTD---SRRIVSAS----QDGKLIVWDSFTTNKVHAI-----PLPSSWVMTCAYSPSG-----NFVACG  115 (343)
T ss_pred             ccccceeeeEecCC---cCeEEeec----cCCeEEEEEcccccceeEE-----ecCceeEEEEEECCCC-----CeEEec
Confidence            46789999999999   99999999    8999999775443332222     3346689999999999     899999


Q ss_pred             C-C-cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307           95 G-D-SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                      + | ...||++.+.+    ....+.+.+|+     +.+.++.|-  +...|++++.|.++.+||+++++.+..+.+|.+.
T Consensus       116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----gylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD  188 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----GYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGD  188 (343)
T ss_pred             CcCceeEEEecccccccccceeeeeecCcc-----ceeEEEEEc--CCCceEecCCCceEEEEEcccceEEEEecCCccc
Confidence            8 6 88999998552    33556788888     899999997  5678999999999999999999999999999999


Q ss_pred             eeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          169 VYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       169 v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      |.+++++  +++.|++|+-|+..++||+|.+..... +..  |+..|++++|.| +|.-+++|+.|+. .++||+|. .+
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt-F~g--hesDINsv~ffP-~G~afatGSDD~t-cRlyDlRa-D~  262 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT-FEG--HESDINSVRFFP-SGDAFATGSDDAT-CRLYDLRA-DQ  262 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeeccCcceeEe-ecc--cccccceEEEcc-CCCeeeecCCCce-eEEEeecC-Cc
Confidence            9999999  589999999999999999999974444 444  789999999999 9999999999999 99999998 44


Q ss_pred             ceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          247 PVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       247 ~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      .+..+..  -..+|++++||..| ++|++|..|.++.+||.-..+            ..-.+.+|...|+++..+|||.-
T Consensus       263 ~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e------------~vg~L~GHeNRvScl~~s~DG~a  329 (343)
T KOG0286|consen  263 ELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE------------RVGVLAGHENRVSCLGVSPDGMA  329 (343)
T ss_pred             EEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc------------eEEEeeccCCeeEEEEECCCCcE
Confidence            4555542  23589999999999 699999999999999998877            23367799999999999999988


Q ss_pred             eEEEecCCeEEEEe
Q 040307          325 WIAIAFVNKLQLLK  338 (339)
Q Consensus       325 l~~~~~d~~v~~w~  338 (339)
                      +.+++.|..+|||.
T Consensus       330 v~TgSWDs~lriW~  343 (343)
T KOG0286|consen  330 VATGSWDSTLRIWA  343 (343)
T ss_pred             EEecchhHheeecC
Confidence            88999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.7e-44  Score=280.53  Aligned_cols=279  Identities=20%  Similarity=0.326  Sum_probs=241.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ...+|..+.|.|+   |+.|++|+    ..|.+.+|+...  -.++.  . ...|..+|.++.|++++     ..+++|.
T Consensus        95 vkc~V~~v~WtPe---GRRLltgs----~SGEFtLWNg~~--fnFEt--i-lQaHDs~Vr~m~ws~~g-----~wmiSgD  157 (464)
T KOG0284|consen   95 VKCPVNVVRWTPE---GRRLLTGS----QSGEFTLWNGTS--FNFET--I-LQAHDSPVRTMKWSHNG-----TWMISGD  157 (464)
T ss_pred             cccceeeEEEcCC---CceeEeec----ccccEEEecCce--eeHHH--H-hhhhcccceeEEEccCC-----CEEEEcC
Confidence            3568999999999   99999999    899999976532  22221  2 27899999999999999     8999998


Q ss_pred             C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      +  .|++|+.+-..   +..+..|.    ...|++++|+| +...|++++.||+|+|||....+....+.+|.-.|.+++
T Consensus       158 ~gG~iKyWqpnmnn---Vk~~~ahh----~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd  229 (464)
T KOG0284|consen  158 KGGMIKYWQPNMNN---VKIIQAHH----AEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD  229 (464)
T ss_pred             CCceEEecccchhh---hHHhhHhh----hhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence            4  99999987663   44444432    17899999999 889999999999999999999988889999999999999


Q ss_pred             ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      |+ ...++++++.|..|++||.+++++...+.   .|+..|..+.|+| ++++|++++.|.. +++||++. -+.+..++
T Consensus       230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~f~~-n~N~Llt~skD~~-~kv~DiR~-mkEl~~~r  303 (464)
T KOG0284|consen  230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVKFNP-NGNWLLTGSKDQS-CKVFDIRT-MKELFTYR  303 (464)
T ss_pred             cCCccceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEEEcC-CCCeeEEccCCce-EEEEehhH-hHHHHHhh
Confidence            99 57799999999999999999998665543   3788999999998 7899999999999 99999996 55688899


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEec
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      +|+..|++++|+|-.+.+|.+|+.||.|..|.+...+             |+  ...+|...|++++|+|-|..|++++.
T Consensus       304 ~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-------------p~~~i~~AHd~~iwsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  304 GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-------------PLGEIPPAHDGEIWSLAYHPLGHILATGSN  370 (464)
T ss_pred             cchhhheeeccccccccceeeccCCCceEEEeccccc-------------cccCCCcccccceeeeeccccceeEeecCC
Confidence            9999999999999888899999999999999998655             33  45579999999999999987778899


Q ss_pred             CCeEEEEe
Q 040307          331 VNKLQLLK  338 (339)
Q Consensus       331 d~~v~~w~  338 (339)
                      |+++++|.
T Consensus       371 d~t~rfw~  378 (464)
T KOG0284|consen  371 DRTVRFWT  378 (464)
T ss_pred             Ccceeeec
Confidence            99999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.3e-43  Score=277.98  Aligned_cols=247  Identities=21%  Similarity=0.330  Sum_probs=221.6

Q ss_pred             ceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      ..++++ .|...|.++.|+|..+ +..||+|+    .||++++|+++.+......     .+|...|..++|+|+|    
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~-~~~lat~s----~Dgtvklw~~~~e~~l~~l-----~gH~~RVs~VafHPsG----  273 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDS-DLNLATAS----ADGTVKLWKLSQETPLQDL-----EGHLARVSRVAFHPSG----  273 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCC-ccceeeec----cCCceeeeccCCCcchhhh-----hcchhhheeeeecCCC----
Confidence            344444 5889999999999832 56899999    7999999888766443332     6899999999999999    


Q ss_pred             CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                       ++|++++ | +-++||+.++.  .+...++|.     ..|.+++|+| +|.++++|+.|..-+|||+++++++..+.+|
T Consensus       274 -~~L~TasfD~tWRlWD~~tk~--ElL~QEGHs-----~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH  344 (459)
T KOG0272|consen  274 -KFLGTASFDSTWRLWDLETKS--ELLLQEGHS-----KGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGH  344 (459)
T ss_pred             -ceeeecccccchhhcccccch--hhHhhcccc-----cccceeEecC-CCceeeccCccchhheeecccCcEEEEeccc
Confidence             9999998 7 99999999987  556667777     9999999998 9999999999999999999999999999999


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..+|.+|+|+ +|..|+||+.|++++|||+|..+.   ++..+.|..-|+.+.|+|..|.+|++++.|++ ++||..+. 
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~-  419 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRT-  419 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCC-
Confidence            9999999999 799999999999999999999875   44556689999999999989999999999999 99999887 


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ..+++++.+|.+.|.++..+|++ ..+++++.|.++++|.
T Consensus       420 ~~~~ksLaGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  420 WSPLKSLAGHEGKVISLDISPDS-QAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccchhhcCCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence            78999999999999999999999 6999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-40  Score=249.98  Aligned_cols=293  Identities=16%  Similarity=0.214  Sum_probs=234.6

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|++.|..++..+.  +.+.+..++    .|..+.+|++..+..++-.......+|...|..+..++++     .+..++
T Consensus        13 gh~d~Vt~la~~~~--~~~~l~sas----rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-----~~alS~   81 (315)
T KOG0279|consen   13 GHTDWVTALAIKIK--NSDILVSAS----RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-----NFALSA   81 (315)
T ss_pred             CCCceEEEEEeecC--CCceEEEcc----cceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-----ceEEec
Confidence            37899999999998  467888888    7999999999877655432222336899999999999999     788888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc--CCcee
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH--DREVY  170 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~v~  170 (339)
                      + | ++++||+.+++  ..+.|.+|.     ..|.+++|+| ++..|++|+.|.+|++|+.... +..++..+  .+.|.
T Consensus        82 swD~~lrlWDl~~g~--~t~~f~GH~-----~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVs  152 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGE--STRRFVGHT-----KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVS  152 (315)
T ss_pred             cccceEEEEEecCCc--EEEEEEecC-----CceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEE
Confidence            7 6 99999999997  889999999     9999999998 9999999999999999998654 44555433  78999


Q ss_pred             EEEecC---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307          171 DISWGG---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP  247 (339)
Q Consensus       171 ~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~  247 (339)
                      |+.|+|   .-+|++++.|++|++||+++.+....+ .  +|.+.++.++++| +|.+.++|+.|+. +.+||++. ++.
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-~--gh~~~v~t~~vSp-DGslcasGgkdg~-~~LwdL~~-~k~  226 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-I--GHSGYVNTVTVSP-DGSLCASGGKDGE-AMLWDLNE-GKN  226 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-c--cccccEEEEEECC-CCCEEecCCCCce-EEEEEccC-Cce
Confidence            999994   569999999999999999998744443 3  3788999999999 9999999999998 99999998 555


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA  327 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  327 (339)
                      ++.+. |...|.+++|+|+. ..|+.+. +..|+|||+..... -.+..+. ..-+ ........-.+++|+++|+.|++
T Consensus       227 lysl~-a~~~v~sl~fspnr-ywL~~at-~~sIkIwdl~~~~~-v~~l~~d-~~g~-s~~~~~~~clslaws~dG~tLf~  300 (315)
T KOG0279|consen  227 LYSLE-AFDIVNSLCFSPNR-YWLCAAT-ATSIKIWDLESKAV-VEELKLD-GIGP-SSKAGDPICLSLAWSADGQTLFA  300 (315)
T ss_pred             eEecc-CCCeEeeEEecCCc-eeEeecc-CCceEEEeccchhh-hhhcccc-cccc-ccccCCcEEEEEEEcCCCcEEEe
Confidence            66665 58899999999996 4555554 55799999998771 0000000 0000 11112334678999999999999


Q ss_pred             EecCCeEEEEeC
Q 040307          328 IAFVNKLQLLKV  339 (339)
Q Consensus       328 ~~~d~~v~~w~v  339 (339)
                      +-.|+.|++|.|
T Consensus       301 g~td~~irv~qv  312 (315)
T KOG0279|consen  301 GYTDNVIRVWQV  312 (315)
T ss_pred             eecCCcEEEEEe
Confidence            999999999985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.3e-40  Score=246.53  Aligned_cols=290  Identities=16%  Similarity=0.251  Sum_probs=237.2

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.+++..++|+|.  .|.+||+++    .|..|+||+... ...+.....+.-+|...|.+++|+|.+     ++||++
T Consensus        12 gh~~r~W~~awhp~--~g~ilAscg----~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g-----~~La~a   79 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPG--KGVILASCG----TDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHG-----RYLASA   79 (312)
T ss_pred             CCCCcEEEEEeccC--CceEEEeec----CCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCC-----cEEEEe
Confidence            36789999999998  367899999    799999988774 344555445556899999999999999     999999


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC---eeeeeeeccCCce
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE---ILETQLVAHDREV  169 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~v  169 (339)
                      + | ++.||.-..++++++.++++|.     ..|.+++|++ +|++||+++.|..|-||.+..+   ++...++.|...|
T Consensus        80 SFD~t~~Iw~k~~~efecv~~lEGHE-----nEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV  153 (312)
T KOG0645|consen   80 SFDATVVIWKKEDGEFECVATLEGHE-----NEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV  153 (312)
T ss_pred             eccceEEEeecCCCceeEEeeeeccc-----cceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence            9 7 9999999999999999999999     8999999997 9999999999999999998744   4778889999999


Q ss_pred             eEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          170 YDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       170 ~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      ..+.|+| ..+|++++.|.+|++|+-.....-........|...|.+++|+| .|..|++++.|++ ++||-... .   
T Consensus       154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~t-v~Iw~~~~-~---  227 (312)
T KOG0645|consen  154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGT-VSIWRLYT-D---  227 (312)
T ss_pred             cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcc-eEeeeecc-C---
Confidence            9999994 78999999999999998774332222333334677999999998 8999999999999 99998653 1   


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCC-CCce
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPL-ELDW  325 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~-~~~l  325 (339)
                       .-..|...++.+.|. ++  .|++++.|+.|++|.-......|       ..+.+  ....|...|++++|.|. ...|
T Consensus       228 -~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p-------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L  296 (312)
T KOG0645|consen  228 -LSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEP-------SWNLLAKKEGAHEVDVNSVQWNPKVSNRL  296 (312)
T ss_pred             -cchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCc-------hHHHHHhhhcccccccceEEEcCCCCCce
Confidence             112367899999999 54  89999999999999877532011       01111  23357889999999995 4457


Q ss_pred             EEEecCCeEEEEeC
Q 040307          326 IAIAFVNKLQLLKV  339 (339)
Q Consensus       326 ~~~~~d~~v~~w~v  339 (339)
                      ++++.||.+++|.+
T Consensus       297 ~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  297 ASGGDDGIVNFWEL  310 (312)
T ss_pred             eecCCCceEEEEEe
Confidence            78899999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.5e-41  Score=268.76  Aligned_cols=287  Identities=20%  Similarity=0.314  Sum_probs=246.8

Q ss_pred             eeeccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccce----eeE-----eecCCCCceEEEEcCC
Q 040307           13 TYMAQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSAD----NRL-----IFDHPYTPTNIAFFPS   82 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~----~~~-----~~~~~~~v~~l~~~~~   82 (339)
                      -..|+.+|.+.+|+|-   .. .||+|+    .+-..++|++..........    +.+     ....+..|++|+|+.+
T Consensus       174 vl~~~~~V~~~~WnP~---~~~llasg~----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~  246 (524)
T KOG0273|consen  174 VLRHESEVFICAWNPL---RDGLLASGS----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND  246 (524)
T ss_pred             eccCCCceEEEecCch---hhhhhhccC----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence            3448889999999998   66 899999    79999999887522221110    011     1233567999999999


Q ss_pred             CCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307           83 EETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        83 ~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                      |     .+||+|. + .++||+....   +..++..|+     ++|.++.|+. .+.+|++++.|+++.+||..+++..+
T Consensus       247 G-----~~LatG~~~G~~riw~~~G~---l~~tl~~Hk-----gPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  247 G-----TLLATGSEDGEARIWNKDGN---LISTLGQHK-----GPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             C-----CeEEEeecCcEEEEEecCch---hhhhhhccC-----CceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEE
Confidence            9     8999998 4 9999998776   677888898     9999999996 99999999999999999999999999


Q ss_pred             eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          161 QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       161 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      .+..|..+-.++.|-+...|++++.|+.|+++.+....+... +.+  |.++|.++.|+| .+.+|++++.|++ ++||.
T Consensus       313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t-~~G--H~g~V~alk~n~-tg~LLaS~SdD~T-lkiWs  387 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKT-FIG--HHGEVNALKWNP-TGSLLASCSDDGT-LKIWS  387 (524)
T ss_pred             eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCccee-eec--ccCceEEEEECC-CCceEEEecCCCe-eEeee
Confidence            998898887889999888999999999999999988774444 444  779999999998 9999999999999 99999


Q ss_pred             cCCCCCceEEEecCCCCeeEEEeccCCC--------CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccc
Q 040307          241 IRFPTNPVVVLSKHEGSVNGISWAPLYG--------RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMA  311 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~  311 (339)
                      +.. ......+.+|...|+.+.|+|+++        ..+++++.|++|++||+..+.             |+ .+..|+.
T Consensus       388 ~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-------------~i~~f~kH~~  453 (524)
T KOG0273|consen  388 MGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-------------PIHTLMKHQE  453 (524)
T ss_pred             cCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-------------eeEeeccCCC
Confidence            877 667889999999999999999863        479999999999999999988             55 5569999


Q ss_pred             eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          312 EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|++++|+|+|+++++++.||.|.+|.+
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence            9999999999999999999999999974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-41  Score=249.48  Aligned_cols=291  Identities=23%  Similarity=0.324  Sum_probs=239.0

Q ss_pred             CCeeEEEeeecCCcccEEEEee--e-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           18 WPISTVAWSVRHDRKSRLAVGS--F-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~--~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      ..=+++.|||-.+  ++||+++  . .=...|++.|.+.+...+...   ...+.-++.+..++|+++.++   .++++.
T Consensus         9 f~GysvqfSPf~~--nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e---~~s~d~~D~LfdV~Wse~~e~---~~~~a~   80 (311)
T KOG0277|consen    9 FHGYSVQFSPFVE--NRLAVATAQHYGLAGNGRLFILEVTDPKGIQE---CQSYDTEDGLFDVAWSENHEN---QVIAAS   80 (311)
T ss_pred             cccceeEeccccc--chhheeehhhcccccCceEEEEecCCCCCeEE---EEeeecccceeEeeecCCCcc---eEEEEe
Confidence            3457899999743  3444443  2 112378899966642222222   123577889999999999863   344445


Q ss_pred             CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           95 GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        95 ~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      || +++|||+.... .++..++.|+     ..|.++.|++.+...+++++.|++|++|+...++.++++.+|...|...+
T Consensus        81 GDGSLrl~d~~~~s-~Pi~~~kEH~-----~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   81 GDGSLRLFDLTMPS-KPIHKFKEHK-----REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             cCceEEEeccCCCC-cchhHHHhhh-----hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence            56 99999965443 5888889988     99999999998888999999999999999999999999999999999999


Q ss_pred             ec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          174 WG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      |+  .++++++++.|+.+++||++...+... .+.  |...+.++.|+..+.+.+++|+.|+. |+.||+++...|+..+
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a--h~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA--HNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFEL  230 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe--ccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceee
Confidence            99  489999999999999999998875554 333  67899999999989999999999999 9999999999999999


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE-EEe
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI-AIA  329 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~-~~~  329 (339)
                      .+|.-.|+.+.|||....+|++++.|-+++|||.....            ..+ ....|.+-+..+.|++..+..+ .++
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD------------SAIETVDHHTEFVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccceEEecccccch------------hhhhhhhccceEEeccccccccCceeeecc
Confidence            99999999999999987899999999999999999766            122 3346888899999999866655 578


Q ss_pred             cCCeEEEEe
Q 040307          330 FVNKLQLLK  338 (339)
Q Consensus       330 ~d~~v~~w~  338 (339)
                      .|+.+.||+
T Consensus       299 WDe~l~Vw~  307 (311)
T KOG0277|consen  299 WDELLYVWN  307 (311)
T ss_pred             cccceeeec
Confidence            999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-39  Score=261.83  Aligned_cols=277  Identities=19%  Similarity=0.317  Sum_probs=241.1

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      ...|++++|+.+   |..||+|.    .+|.++||+  ..+.....   + ..|.++|.+|.|+..+     .+|++++ 
T Consensus       235 nkdVT~L~Wn~~---G~~LatG~----~~G~~riw~--~~G~l~~t---l-~~HkgPI~slKWnk~G-----~yilS~~v  296 (524)
T KOG0273|consen  235 NKDVTSLDWNND---GTLLATGS----EDGEARIWN--KDGNLIST---L-GQHKGPIFSLKWNKKG-----TYILSGGV  296 (524)
T ss_pred             cCCcceEEecCC---CCeEEEee----cCcEEEEEe--cCchhhhh---h-hccCCceEEEEEcCCC-----CEEEeccC
Confidence            468999999999   99999999    799999955  44444432   2 5799999999999999     8999988 


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                      | ++.+||..+++  ....+.-|.     .+..++.|-  +...|++++.|+.|+|+.+...+++.++.+|.++|.++.|
T Consensus       297 D~ttilwd~~~g~--~~q~f~~~s-----~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~  367 (524)
T KOG0273|consen  297 DGTTILWDAHTGT--VKQQFEFHS-----APALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW  367 (524)
T ss_pred             CccEEEEeccCce--EEEeeeecc-----CCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence            6 99999999987  667777776     666789996  6788999999999999999999999999999999999999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC--------CCCeEEEEeeCCCeEEEEecCCCC
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA--------DPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      + .+.+|++++.|++++||..........+.   .|...|..+.|+|.        .+..+++++.|+. |++||+.. +
T Consensus       368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~-g  442 (524)
T KOG0273|consen  368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVES-G  442 (524)
T ss_pred             CCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccC-C
Confidence            9 59999999999999999987766443332   36778999999873        3568999999999 99999998 7


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                      .++..+..|..+|++++|+|++ +++|+|+.||.|.+|+.+..+             ....+...+.|..++|+..|..+
T Consensus       443 v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~-------------l~~s~~~~~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  443 VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK-------------LVKSYQGTGGIFELCWNAAGDKL  508 (524)
T ss_pred             ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh-------------eeEeecCCCeEEEEEEcCCCCEE
Confidence            8899999999999999999999 699999999999999999988             66777778889999999999877


Q ss_pred             EEEecCCeEEEEeC
Q 040307          326 IAIAFVNKLQLLKV  339 (339)
Q Consensus       326 ~~~~~d~~v~~w~v  339 (339)
                      .++..|+.+.+.++
T Consensus       509 ~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  509 GACASDGSVCVLDL  522 (524)
T ss_pred             EEEecCCCceEEEe
Confidence            78889999988764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-40  Score=257.42  Aligned_cols=282  Identities=16%  Similarity=0.232  Sum_probs=248.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .+..+|+.+-|+|+   -.++++++    .|.+|++||+.  ++++..  .+ .+|.+.|..++|+..|     ++||++
T Consensus       106 g~r~~vt~v~~hp~---~~~v~~as----~d~tikv~D~~--tg~~e~--~L-rGHt~sv~di~~~a~G-----k~l~tc  168 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPS---EALVVSAS----EDATIKVFDTE--TGELER--SL-RGHTDSVFDISFDASG-----KYLATC  168 (406)
T ss_pred             ccccceeeeeeccC---ceEEEEec----CCceEEEEEcc--chhhhh--hh-hccccceeEEEEecCc-----cEEEec
Confidence            36689999999999   88999998    89999996655  444433  33 7999999999999999     899999


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | .+.+||.++. .+++..+.+|+     ..|.++.|-| .+.+|++++.|.+|+.|++.++.++.++.+|...|..+
T Consensus       169 SsDl~~~LWd~~~~-~~c~ks~~gh~-----h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v  241 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTF-FRCIKSLIGHE-----HGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV  241 (406)
T ss_pred             CCccchhheeHHHH-HHHHHHhcCcc-----cceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence            8 5 7999999875 45778888888     8999999999 88999999999999999999999999999999999999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC--------------CCCeEEEEeeCCCeEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA--------------DPRFMATVGMDSNKVV  237 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------------~~~~l~~~~~d~~~i~  237 (339)
                      +.+ ++.++++++.|.++++|-+.+.+....+.   .|+.++.+++|.|.              .+.++.+++.|+. |+
T Consensus       242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik  317 (406)
T KOG0295|consen  242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IK  317 (406)
T ss_pred             EecCCeeEEEecCCCceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EE
Confidence            999 99999999999999999999886444432   26778999999772              2369999999999 99


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEE
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVR  317 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  317 (339)
                      +||+.. +.++.++.+|...|..++|+|.| ++|+++.+|+++++||+++..            .......|..-+++++
T Consensus       318 ~wdv~t-g~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~------------cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  318 IWDVST-GMCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ------------CMKTLEAHEHFVTSLD  383 (406)
T ss_pred             EEeccC-CeEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce------------eeeccCCCcceeEEEe
Confidence            999998 78899999999999999999999 799999999999999999988            2234557899999999


Q ss_pred             ecCCCCceEEEecCCeEEEEe
Q 040307          318 WSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       318 ~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      |+.+.+++++|+-|.++++|.
T Consensus       384 fh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             cCCCCceEEeccccceeeeee
Confidence            999999999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-39  Score=242.43  Aligned_cols=243  Identities=17%  Similarity=0.273  Sum_probs=216.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .+|++.|+.++..+.+.    +++.+++ | .+.+|++....   ..+.+.+.+|.     ..|..+..++ ++++.+++
T Consensus        12 ~gh~d~Vt~la~~~~~~----~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~-dg~~alS~   81 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNS----DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSS-DGNFALSA   81 (315)
T ss_pred             cCCCceEEEEEeecCCC----ceEEEcccceEEEEEEeccCccccCceeeeeeccc-----eEecceEEcc-CCceEEec
Confidence            68999999999999864    8888888 5 99999997754   23578888988     8999999998 99999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                      +.|+.+++||+.+++..+.|.+|...|.+++|+ ++..+++|+.|.+|++|++............  +...|.++.|+|.
T Consensus        82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~--~~~WVscvrfsP~  159 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS--HREWVSCVRFSPN  159 (315)
T ss_pred             cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC--CcCcEEEEEEcCC
Confidence            999999999999999999999999999999999 8999999999999999999887644443332  3689999999995


Q ss_pred             C-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          222 D-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       222 ~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      . .-+|++++.|+. +++||+++ .+....+.+|.+.++.+++|||| .++++|+.||.+.+||+...+           
T Consensus       160 ~~~p~Ivs~s~Dkt-vKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k-----------  225 (315)
T KOG0279|consen  160 ESNPIIVSASWDKT-VKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK-----------  225 (315)
T ss_pred             CCCcEEEEccCCce-EEEEccCC-cchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc-----------
Confidence            4 678999999999 99999998 67788999999999999999999 599999999999999999988           


Q ss_pred             ccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                        .+...+|...|.+++|+|+. +.+++..+..|+||++
T Consensus       226 --~lysl~a~~~v~sl~fspnr-ywL~~at~~sIkIwdl  261 (315)
T KOG0279|consen  226 --NLYSLEAFDIVNSLCFSPNR-YWLCAATATSIKIWDL  261 (315)
T ss_pred             --eeEeccCCCeEeeEEecCCc-eeEeeccCCceEEEec
Confidence              56777899999999999997 6778888888999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=3.7e-39  Score=258.15  Aligned_cols=319  Identities=22%  Similarity=0.339  Sum_probs=249.1

Q ss_pred             eeeeeeccCCeeEEEeeecCCcc-------cEEEEeeeccc-cCCeEEEEecCCC--------------CCcc-------
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRK-------SRLAVGSFLED-YSNKIELVNFNPE--------------TSDF-------   60 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~-------~~la~g~~~~~-~~~~i~i~~~~~~--------------~~~~-------   60 (339)
                      .+.++...+|-.++.|-|+....       +.|+.|+...+ ..+.+.|=+++..              .+++       
T Consensus        33 lv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~  112 (422)
T KOG0264|consen   33 LVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVS  112 (422)
T ss_pred             HhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccccccCCccccc
Confidence            45566778999999999973212       46777776433 6677777543311              1110       


Q ss_pred             -cceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc--------ceeEEEeecCCCccCCCCEEEE
Q 040307           61 -SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR--------TELKSLLNSNKTSEFSSAITSF  129 (339)
Q Consensus        61 -~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~  129 (339)
                       .......+.|.+.|+.+.+.|+..    .++|+.+.  .+.|||.....        ..+-..+.+|+     ..-+++
T Consensus       113 ~~v~i~~~i~h~gEVnRaRymPQnp----~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-----~eg~gl  183 (422)
T KOG0264|consen  113 GKVEISQKINHDGEVNRARYMPQNP----NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-----KEGYGL  183 (422)
T ss_pred             cceEEEEeccCCccchhhhhCCCCC----cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----cccccc
Confidence             111123457999999999999984    78887764  99999987643        22334788888     445679


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCe-------eeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcce
Q 040307          130 DWAGFDTRRVATCSVDTTCVIWDIDREI-------LETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERS  200 (339)
Q Consensus       130 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~-------~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~  200 (339)
                      +|++.....+++++.|+.|++||+....       +...+.+|...|..++|+  ..++|++++.|+.+.|||+|+. ..
T Consensus       184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~  262 (422)
T KOG0264|consen  184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS  262 (422)
T ss_pred             ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC
Confidence            9999888899999999999999996532       455678999999999999  6889999999999999999973 22


Q ss_pred             eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE
Q 040307          201 TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA  280 (339)
Q Consensus       201 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  280 (339)
                      ........|..++.+++|+|.++.+||+|+.|++ |++||+|+..+++.++.+|...|.+|.|+|+.+.+||+++.|+.+
T Consensus       263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl  341 (422)
T KOG0264|consen  263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL  341 (422)
T ss_pred             CCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence            2222333488999999999999999999999999 999999999999999999999999999999988999999999999


Q ss_pred             EEEEecCCCC-CCCCCCCCCcccce-eeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307          281 LIWEVVGPGY-RSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV  339 (339)
Q Consensus       281 ~iwd~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v  339 (339)
                      .|||+..-.. ++.+....+..+++ ..-+|...|..+.|+|..+.++ +++.|+.++||++
T Consensus       342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence            9999988653 22233333333333 3347899999999999999876 5789999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.7e-40  Score=278.75  Aligned_cols=276  Identities=17%  Similarity=0.245  Sum_probs=231.7

Q ss_pred             ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      -.++++. ....+.|..|+++   +..||+|.    .|..|++|.+.....+..       .+.      ++-+.-    
T Consensus       369 ic~YT~~nt~~~v~ca~fSdd---ssmlA~Gf----~dS~i~~~Sl~p~kl~~l-------k~~------~~l~~~----  424 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDD---SSMLACGF----VDSSVRVWSLTPKKLKKL-------KDA------SDLSNI----  424 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCC---cchhhccc----cccEEEEEecchhhhccc-------cch------hhhccc----
Confidence            3455554 3578999999999   99999999    899999988776532221       111      121111    


Q ss_pred             CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                          -+.+ | .+.+.|.+...  ...++-+|.     ++|....|+| +.++|+++++|++|++|.+.+..++..+++|
T Consensus       425 ----d~~sad~~~~~~D~~~~~--~~~~L~GH~-----GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH  492 (707)
T KOG0263|consen  425 ----DTESADVDVDMLDDDSSG--TSRTLYGHS-----GPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH  492 (707)
T ss_pred             ----cccccchhhhhccccCCc--eeEEeecCC-----Cceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCC
Confidence                1122 2 45555555554  666788998     9999999999 9999999999999999999999999999999


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..+|+++.|+ .|-+||+++.|++.++|...... +..++.+  |...|.|+.|+| +..|+++|+.|.+ +++||+.+ 
T Consensus       493 ~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifag--hlsDV~cv~FHP-Ns~Y~aTGSsD~t-VRlWDv~~-  566 (707)
T KOG0263|consen  493 LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAG--HLSDVDCVSFHP-NSNYVATGSSDRT-VRLWDVST-  566 (707)
T ss_pred             CcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcc--cccccceEEECC-cccccccCCCCce-EEEEEcCC-
Confidence            9999999999 59999999999999999998866 4444555  778999999999 9999999999999 99999998 


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      +..++.+.+|.++|.+++|||+| ++|++|+.||.|++||+..+.            ......+|.+.|+++.|+.+|..
T Consensus       567 G~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~------------~v~~l~~Ht~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  567 GNSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS------------LVKQLKGHTGTIYSLSFSRDGNV  633 (707)
T ss_pred             CcEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc------------chhhhhcccCceeEEEEecCCCE
Confidence            66799999999999999999999 799999999999999999988            23366789999999999999998


Q ss_pred             eEEEecCCeEEEEeC
Q 040307          325 WIAIAFVNKLQLLKV  339 (339)
Q Consensus       325 l~~~~~d~~v~~w~v  339 (339)
                      |++++.|++|++|++
T Consensus       634 Lasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  634 LASGGADNSVRLWDL  648 (707)
T ss_pred             EEecCCCCeEEEEEc
Confidence            889999999999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.3e-39  Score=242.88  Aligned_cols=242  Identities=20%  Similarity=0.315  Sum_probs=215.1

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC--CCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE--TSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ..|..++|+|.   ++++|+|+    -|+...||++...  .+.......+ .+|.+.+.|..|.+|+     .+|-+++
T Consensus        98 ~WVMtCA~sPS---g~~VAcGG----LdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD~-----~ilT~SG  164 (343)
T KOG0286|consen   98 SWVMTCAYSPS---GNFVACGG----LDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDDN-----HILTGSG  164 (343)
T ss_pred             eeEEEEEECCC---CCeEEecC----cCceeEEEecccccccccceeeeee-cCccceeEEEEEcCCC-----ceEecCC
Confidence            57899999999   99999999    6999999998854  2222222233 7999999999999987     6665566


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                      | +..+||+++++  ....|.+|.     +.|.+++++|.+++.+++|+.|+..++||++.+.+++.+.+|...|++++|
T Consensus       165 D~TCalWDie~g~--~~~~f~GH~-----gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f  237 (343)
T KOG0286|consen  165 DMTCALWDIETGQ--QTQVFHGHT-----GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF  237 (343)
T ss_pred             CceEEEEEcccce--EEEEecCCc-----ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence            7 99999999998  889999999     999999999889999999999999999999999999999999999999999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK  253 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~  253 (339)
                      . ++.-|++|+.|+++++||+|..+.... +.......+|++++|+. .|++|++|..|.+ +.+||.-+ ++.+..+.+
T Consensus       238 fP~G~afatGSDD~tcRlyDlRaD~~~a~-ys~~~~~~gitSv~FS~-SGRlLfagy~d~~-c~vWDtlk-~e~vg~L~G  313 (343)
T KOG0286|consen  238 FPSGDAFATGSDDATCRLYDLRADQELAV-YSHDSIICGITSVAFSK-SGRLLFAGYDDFT-CNVWDTLK-GERVGVLAG  313 (343)
T ss_pred             ccCCCeeeecCCCceeEEEeecCCcEEee-eccCcccCCceeEEEcc-cccEEEeeecCCc-eeEeeccc-cceEEEeec
Confidence            9 699999999999999999999885554 44445668899999996 9999999999999 99999876 667889999


Q ss_pred             CCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          254 HEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      |...|.++..+||| .-+++|+.|..++||.
T Consensus       314 HeNRvScl~~s~DG-~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  314 HENRVSCLGVSPDG-MAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence            99999999999999 7999999999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.7e-39  Score=243.29  Aligned_cols=285  Identities=18%  Similarity=0.203  Sum_probs=239.9

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      .+....|++.|+.+.|+|+   |.+||+|+    .|..|.+|+...+.+.+-.    ..+|.++|..+.|.+++     .
T Consensus        40 ~m~l~gh~geI~~~~F~P~---gs~~aSgG----~Dr~I~LWnv~gdceN~~~----lkgHsgAVM~l~~~~d~-----s  103 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPD---GSCFASGG----SDRAIVLWNVYGDCENFWV----LKGHSGAVMELHGMRDG-----S  103 (338)
T ss_pred             hhhcCCCcceEEEEEECCC---CCeEeecC----CcceEEEEeccccccceee----eccccceeEeeeeccCC-----C
Confidence            4455568899999999999   99999999    7999999986655544443    36999999999999999     6


Q ss_pred             eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307           90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  167 (339)
                      .+++++ | +++.||+++++  ....+++|.     .-|+.+.-+.....++.+++.|+++++||+++.+.++++. ...
T Consensus       104 ~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~-----~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky  175 (338)
T KOG0265|consen  104 HILSCGTDKTVRGWDAETGK--RIRKHKGHT-----SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY  175 (338)
T ss_pred             EEEEecCCceEEEEecccce--eeehhcccc-----ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence            676666 6 99999999998  888888888     7888887554456788899999999999999988888874 567


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-  245 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-  245 (339)
                      +++++.|. .+..+.+|+-|+.|++||+|.+..... ..  +|...|+.+..+| +|.++.+-+.|.. +++||++... 
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-ls--Gh~DtIt~lsls~-~gs~llsnsMd~t-vrvwd~rp~~p  250 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-LS--GHADTITGLSLSR-YGSFLLSNSMDNT-VRVWDVRPFAP  250 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEE-ee--cccCceeeEEecc-CCCccccccccce-EEEEEecccCC
Confidence            89999999 788999999999999999999874443 33  3789999999998 9999999999999 9999998522 


Q ss_pred             --CceEEEecCCC----CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307          246 --NPVVVLSKHEG----SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS  319 (339)
Q Consensus       246 --~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  319 (339)
                        .++..+.+|..    ....++|+|++ ..+.+|+.|..+++||.....            -.....+|.+.|++++|+
T Consensus       251 ~~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~------------~lyklpGh~gsvn~~~Fh  317 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR------------ILYKLPGHYGSVNEVDFH  317 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc------------EEEEcCCcceeEEEeeec
Confidence              23556666543    45678999999 699999999999999999876            233666899999999999


Q ss_pred             CCCCceEEEecCCeEEE
Q 040307          320 PLELDWIAIAFVNKLQL  336 (339)
Q Consensus       320 p~~~~l~~~~~d~~v~~  336 (339)
                      |..+.+++++.|++|.+
T Consensus       318 p~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  318 PTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCcEEEEeccCceeEe
Confidence            99998889999999876

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.6e-38  Score=266.12  Aligned_cols=280  Identities=18%  Similarity=0.251  Sum_probs=244.0

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      ..|++.+|+|.   ...||+|-    ..|...+|.+..-.  +..  .+ .-...+|..++|+..|     +.||.|+. 
T Consensus       266 ~kvtaa~fH~~---t~~lvvgF----ssG~f~LyelP~f~--lih--~L-Sis~~~I~t~~~N~tG-----DWiA~g~~k  328 (893)
T KOG0291|consen  266 SKVTAAAFHKG---TNLLVVGF----SSGEFGLYELPDFN--LIH--SL-SISDQKILTVSFNSTG-----DWIAFGCSK  328 (893)
T ss_pred             cceeeeeccCC---ceEEEEEe----cCCeeEEEecCCce--EEE--Ee-ecccceeeEEEecccC-----CEEEEcCCc
Confidence            68999999999   99999998    79999997765432  222  22 2235689999999999     89999884 


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                        .+.||+.....  -+...++|.     ..+++++++| ||+++|+|++||+|+|||..++-+..++..|++.|+.++|
T Consensus       329 lgQLlVweWqsEs--YVlKQQgH~-----~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f  400 (893)
T KOG0291|consen  329 LGQLLVWEWQSES--YVLKQQGHS-----DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF  400 (893)
T ss_pred             cceEEEEEeeccc--eeeeccccc-----cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence              89999998876  556667777     8999999999 9999999999999999999999999999999999999999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK  253 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~  253 (339)
                      + .++.+++.+.||+|+.||+...+.-..+..+  ...+..+++..| .|.++.+|+.|...|.+|++++ ++.+..+.+
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qT-GqllDiLsG  476 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--EPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQT-GQLLDILSG  476 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeecccceeeeecCC--CceeeeEEEEcC-CCCEEEeeccceEEEEEEEeec-CeeeehhcC
Confidence            9 8999999999999999999988765554444  346778999998 8999999999988899999998 788999999


Q ss_pred             CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCe
Q 040307          254 HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNK  333 (339)
Q Consensus       254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~  333 (339)
                      |.++|.+++|+|++ ..|+++|.|.+|++||+-...            .......+...+..++|+|+|+.++.+..||.
T Consensus       477 HEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~------------~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  477 HEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSS------------GTVETLEIRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             CCCcceeeEEcccc-CeEEeccccceEEEEEeeccC------------ceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence            99999999999999 599999999999999998765            12344566778999999999999999999999


Q ss_pred             EEEEeC
Q 040307          334 LQLLKV  339 (339)
Q Consensus       334 v~~w~v  339 (339)
                      |.+|++
T Consensus       544 Itf~d~  549 (893)
T KOG0291|consen  544 ITFFDI  549 (893)
T ss_pred             EEEEEh
Confidence            999984

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-37  Score=288.06  Aligned_cols=297  Identities=12%  Similarity=0.179  Sum_probs=234.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC--CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET--SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      |...|.+++|+|+   +++||+|+    .|+.|+||+.....  ......+.....+...|.+++|++...    .+||+
T Consensus       482 ~~~~V~~i~fs~d---g~~latgg----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~las  550 (793)
T PLN00181        482 SSNLVCAIGFDRD---GEFFATAG----VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK----SQVAS  550 (793)
T ss_pred             CCCcEEEEEECCC---CCEEEEEe----CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC----CEEEE
Confidence            6778999999999   99999999    79999999875321  111111122244567899999998643    68888


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      ++ | +|++||+.+++  .+..+.+|.     ..|++++|+|.++.+|++|+.|+.|++||++++..+..+..+ ..+.+
T Consensus       551 ~~~Dg~v~lWd~~~~~--~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~  622 (793)
T PLN00181        551 SNFEGVVQVWDVARSQ--LVTEMKEHE-----KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC  622 (793)
T ss_pred             EeCCCeEEEEECCCCe--EEEEecCCC-----CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence            87 5 99999999876  777888888     899999999767899999999999999999999888888644 67999


Q ss_pred             EEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-----
Q 040307          172 ISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP-----  244 (339)
Q Consensus       172 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~-----  244 (339)
                      +.|+  ++.+|++|+.|+.|++||++..........  .|...|.++.|.  ++.+|++++.|+. |++||++..     
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~--~h~~~V~~v~f~--~~~~lvs~s~D~~-ikiWd~~~~~~~~~  697 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI--GHSKTVSYVRFV--DSSTLVSSSTDNT-LKLWDLSMSISGIN  697 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec--CCCCCEEEEEEe--CCCEEEEEECCCE-EEEEeCCCCccccC
Confidence            9996  589999999999999999998764333333  377899999996  6789999999999 999999752     


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc---eeeecccceeEEEEecCC
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP---ELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~p~  321 (339)
                      ..++..+.+|...+..++|+|++ .+|++|+.|+.|++|+......  ..........+   .....+...|.+++|+|+
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~  774 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMP--VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ  774 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCc--eEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence            35678899999999999999998 6999999999999999765430  00000000001   112235567999999999


Q ss_pred             CCceEEEecCCeEEEEeC
Q 040307          322 ELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       322 ~~~l~~~~~d~~v~~w~v  339 (339)
                      +..+++++.||.|++|++
T Consensus       775 ~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        775 SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCeEEEecCCCcEEEEec
Confidence            999999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7e-38  Score=271.73  Aligned_cols=283  Identities=19%  Similarity=0.285  Sum_probs=239.0

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      ...|.++.|+|+   |+.|++++    .++.+++|+..........  .+ .+|...|.+++|+|++     +++++++ 
T Consensus       159 ~~sv~~~~fs~~---g~~l~~~~----~~~~i~~~~~~~~~~~~~~--~l-~~h~~~v~~~~fs~d~-----~~l~s~s~  223 (456)
T KOG0266|consen  159 CPSVTCVDFSPD---GRALAAAS----SDGLIRIWKLEGIKSNLLR--EL-SGHTRGVSDVAFSPDG-----SYLLSGSD  223 (456)
T ss_pred             cCceEEEEEcCC---CCeEEEcc----CCCcEEEeecccccchhhc--cc-cccccceeeeEECCCC-----cEEEEecC
Confidence            578999999999   99999998    7999999887433311222  22 6899999999999999     8999998 


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                      | +|+|||+... ...+.++.+|.     ..|++++|+| .++++++|+.|++|+|||+++++++..+.+|.+.|++++|
T Consensus       224 D~tiriwd~~~~-~~~~~~l~gH~-----~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  224 DKTLRIWDLKDD-GRNLKTLKGHS-----TYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             CceEEEeeccCC-CeEEEEecCCC-----CceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence            4 9999999443 23888999999     9999999998 7799999999999999999999999999999999999999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      + ++++|++++.|+.|++||+.++...  ..+....... +++++.|+| ++.++++++.|+. +++||++. ...+...
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~-~~~w~l~~-~~~~~~~  372 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP-NGKYLLSASLDRT-LKLWDLRS-GKSVGTY  372 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC-CCcEEEEecCCCe-EEEEEccC-Ccceeee
Confidence            9 8999999999999999999999842  3333332223 699999998 9999999999998 99999997 5567777


Q ss_pred             ecCCCC---eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEEEEecCCCCceEE
Q 040307          252 SKHEGS---VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINVVRWSPLELDWIA  327 (339)
Q Consensus       252 ~~~~~~---v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~  327 (339)
                      .+|...   +.+...++.+ .++++|+.|+.|++|++....            ......+| ...+..++|+|....+++
T Consensus       373 ~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~------------~~~~l~~h~~~~~~~~~~~~~~~~~~s  439 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG------------ILQRLEGHSKAAVSDLSSHPTENLIAS  439 (456)
T ss_pred             cccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc------------hhhhhcCCCCCceeccccCCCcCeeee
Confidence            777764   3444556777 699999999999999999876            23455677 888999999999987777


Q ss_pred             Ee--cCCeEEEEe
Q 040307          328 IA--FVNKLQLLK  338 (339)
Q Consensus       328 ~~--~d~~v~~w~  338 (339)
                      .+  .|+.+++|+
T Consensus       440 ~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  440 SSFEGDGLIRLWK  452 (456)
T ss_pred             cCcCCCceEEEec
Confidence            66  799999997

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5e-38  Score=246.23  Aligned_cols=291  Identities=19%  Similarity=0.295  Sum_probs=242.0

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      ..++.+..+.|++.|.++...++     .+++|+    +||.+++|+..  +.....    ..+|.++|.+++|.-....
T Consensus        94 ~aP~pl~~~~hdDWVSsv~~~~~-----~Iltgs----YDg~~riWd~~--Gk~~~~----~~Ght~~ik~v~~v~~n~~  158 (423)
T KOG0313|consen   94 TAPKPLQCFLHDDWVSSVKGASK-----WILTGS----YDGTSRIWDLK--GKSIKT----IVGHTGPIKSVAWVIKNSS  158 (423)
T ss_pred             CCCCccccccchhhhhhhcccCc-----eEEEee----cCCeeEEEecC--CceEEE----EecCCcceeeeEEEecCCc
Confidence            34677888889999999988866     899999    79999996543  433332    3799999998888654410


Q ss_pred             CCCCeEEEeC-C-cEEEEeecCCcce--eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC------
Q 040307           86 LNPDIVATSG-D-SLRLWEIHDDRTE--LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR------  155 (339)
Q Consensus        86 ~~~~~la~~~-~-~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~------  155 (339)
                        ...|++++ | ++++|.++.++..  ....-.+|+     ..|-++...+ ++..+++|+.|..|.+|+..+      
T Consensus       159 --~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk-----~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~  230 (423)
T KOG0313|consen  159 --SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK-----RSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDEL  230 (423)
T ss_pred             --cceEEEecCCceEEEEEecCchhhhhHHhHhcccc-----cceeEEEecC-CCCeEEeecccceeeecccCCCccccc
Confidence              13577777 5 9999999887622  222334777     9999999997 999999999999999999321      


Q ss_pred             -------------------CeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307          156 -------------------EILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL  216 (339)
Q Consensus       156 -------------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  216 (339)
                                         ..++..+.+|..+|.++.|++...+.+++.|.+|+.||+.+++....+...    ..+.++
T Consensus       231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~----ksl~~i  306 (423)
T KOG0313|consen  231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN----KSLNCI  306 (423)
T ss_pred             cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC----cceeEe
Confidence                               136777889999999999999889999999999999999999876666554    689999


Q ss_pred             EEecCCCCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307          217 EWNKADPRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN  294 (339)
Q Consensus       217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  294 (339)
                      ..+| ..++|++|+.|.. +++||.|.+..  +..++.+|+..|.++.|+|..+.+|++++.|+++++||++...     
T Consensus       307 ~~~~-~~~Ll~~gssdr~-irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k-----  379 (423)
T KOG0313|consen  307 SYSP-LSKLLASGSSDRH-IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK-----  379 (423)
T ss_pred             eccc-ccceeeecCCCCc-eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC-----
Confidence            9998 8999999999999 99999998543  4567889999999999999998999999999999999999977     


Q ss_pred             CCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          295 GGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       295 ~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                             .|+ .+.+|...|.++.|...+ .+++++.|++|++++
T Consensus       380 -------~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  380 -------APLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFK  416 (423)
T ss_pred             -------CcceeeccCCceEEEEeccCCc-eEEeccCcceEEEec
Confidence                   344 667899999999998765 689999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.3e-36  Score=251.03  Aligned_cols=280  Identities=19%  Similarity=0.266  Sum_probs=236.3

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|.+++|+|+   +++|++++    .+|.+++|+++......    . ...|...+..+.|+|++     ++++++
T Consensus         7 ~h~~~i~~~~~~~~---~~~l~~~~----~~g~i~i~~~~~~~~~~----~-~~~~~~~i~~~~~~~~~-----~~l~~~   69 (289)
T cd00200           7 GHTGGVTCVAFSPD---GKLLATGS----GDGTIKVWDLETGELLR----T-LKGHTGPVRDVAASADG-----TYLASG   69 (289)
T ss_pred             ccCCCEEEEEEcCC---CCEEEEee----cCcEEEEEEeeCCCcEE----E-EecCCcceeEEEECCCC-----CEEEEE
Confidence            47899999999999   99999999    79999998887544222    2 25788889999999999     788887


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + + .|++|++.+++  ....+..|.     ..+.++.|+| +++++++++.++.|.+||+++++....+..|...+.++
T Consensus        70 ~~~~~i~i~~~~~~~--~~~~~~~~~-----~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  141 (289)
T cd00200          70 SSDKTIRLWDLETGE--CVRTLTGHT-----SYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV  141 (289)
T ss_pred             cCCCeEEEEEcCccc--ceEEEeccC-----CcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence            7 5 99999999875  666677776     7899999998 78888888889999999999888888888899999999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      +|+ ++.++++++.|+.|++||++..+....+. .  +...+.++.|+| +++.+++++.++. +++||++. .+++..+
T Consensus       142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~--~~~~i~~~~~~~-~~~~l~~~~~~~~-i~i~d~~~-~~~~~~~  215 (289)
T cd00200         142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-G--HTGEVNSVAFSP-DGEKLLSSSSDGT-IKLWDLST-GKCLGTL  215 (289)
T ss_pred             EEcCcCCEEEEEcCCCcEEEEEccccccceeEe-c--CccccceEEECC-CcCEEEEecCCCc-EEEEECCC-Cceecch
Confidence            999 47777777779999999999776544433 2  566899999998 7788888888988 99999987 5667777


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      ..|...+.++.|+|++ .++++++.||.+++|++....            .......|...|.+++|+|+++.+++++.|
T Consensus       216 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         216 RGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE------------CVQTLSGHTNSVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             hhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce------------eEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence            7888899999999996 688888889999999998766            223444778899999999999889999999


Q ss_pred             CeEEEEe
Q 040307          332 NKLQLLK  338 (339)
Q Consensus       332 ~~v~~w~  338 (339)
                      +.+++|+
T Consensus       283 ~~i~iw~  289 (289)
T cd00200         283 GTIRIWD  289 (289)
T ss_pred             CeEEecC
Confidence            9999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-37  Score=242.64  Aligned_cols=286  Identities=18%  Similarity=0.189  Sum_probs=242.5

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|-+.|.|+++-|.   .+.|++|+    .|+++.|||+........    + .+|-..|..+++|+-.     .++.++
T Consensus       149 gHlgWVr~vavdP~---n~wf~tgs----~DrtikIwDlatg~Lklt----l-tGhi~~vr~vavS~rH-----pYlFs~  211 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPG---NEWFATGS----ADRTIKIWDLATGQLKLT----L-TGHIETVRGVAVSKRH-----PYLFSA  211 (460)
T ss_pred             hccceEEEEeeCCC---ceeEEecC----CCceeEEEEcccCeEEEe----e-cchhheeeeeeecccC-----ceEEEe
Confidence            36789999999999   99999999    799999977665443333    2 6899999999999998     777777


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | .|+.||++..+  .++.+.+|-     +.|.+++.+| .-+.|++|+.|.+++|||+++...+..+.+|..+|.++
T Consensus       212 gedk~VKCwDLe~nk--vIR~YhGHl-----S~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V  283 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNK--VIRHYHGHL-----SGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV  283 (460)
T ss_pred             cCCCeeEEEechhhh--hHHHhcccc-----ceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence            7 4 99999999987  778888888     9999999999 88999999999999999999999999999999999999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      .+. -+-.+++|+.|++|++||++.++....+.   +|+..+.+++.+| ....+|+++.|.  |+-|++.. +..+..+
T Consensus       284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP-~e~~fASas~dn--ik~w~~p~-g~f~~nl  356 (460)
T KOG0285|consen  284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHP-KENLFASASPDN--IKQWKLPE-GEFLQNL  356 (460)
T ss_pred             EeecCCCceEEecCCceEEEeeeccCceeEeee---cccceeeEEecCC-chhhhhccCCcc--ceeccCCc-cchhhcc
Confidence            998 36678999999999999999998555443   3678999999999 888999988887  99999987 6677889


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      .+|..-|++++.+.|+  ++++|+++|.+.+||.+.+.. ....  ...+.| -.......|++.+|...|..|+++..|
T Consensus       357 sgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~n-yQ~~--~t~vqp-GSl~sEagI~as~fDktg~rlit~ead  430 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHN-YQRG--QTIVQP-GSLESEAGIFASCFDKTGSRLITGEAD  430 (460)
T ss_pred             ccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcc-cccc--cccccC-CccccccceeEEeecccCceEEeccCC
Confidence            9999999999999997  899999999999999998761 0000  000001 011235679999999999999999999


Q ss_pred             CeEEEEe
Q 040307          332 NKLQLLK  338 (339)
Q Consensus       332 ~~v~~w~  338 (339)
                      .+|++|+
T Consensus       431 KtIk~~k  437 (460)
T KOG0285|consen  431 KTIKMYK  437 (460)
T ss_pred             cceEEEe
Confidence            9999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.3e-39  Score=252.47  Aligned_cols=246  Identities=21%  Similarity=0.369  Sum_probs=212.2

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      .+.|.++|+++.|+++   +..+++|.    .+|.|++|+.+...-....     ..|...|.+++|+|+.     ..++
T Consensus       134 lQaHDs~Vr~m~ws~~---g~wmiSgD----~gG~iKyWqpnmnnVk~~~-----ahh~eaIRdlafSpnD-----skF~  196 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHN---GTWMISGD----KGGMIKYWQPNMNNVKIIQ-----AHHAEAIRDLAFSPND-----SKFL  196 (464)
T ss_pred             hhhhcccceeEEEccC---CCEEEEcC----CCceEEecccchhhhHHhh-----HhhhhhhheeccCCCC-----ceeE
Confidence            3468899999999999   99999999    7999999765544433332     4566899999999988     7888


Q ss_pred             EeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           93 TSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        93 ~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      +++|  +|+|||....+  ....+.+|.     -.|.+++|+| ...+|++|+.|..|++||.+++.++.++..|+..|.
T Consensus       197 t~SdDg~ikiWdf~~~k--ee~vL~GHg-----wdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl  268 (464)
T KOG0284|consen  197 TCSDDGTIKIWDFRMPK--EERVLRGHG-----WDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL  268 (464)
T ss_pred             EecCCCeEEEEeccCCc--hhheeccCC-----CCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEE
Confidence            8885  99999998876  566778887     8999999999 889999999999999999999999999999999999


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      .+.|+ ++++|++++.|..++++|+|+.+.... +  ..|+..++++.|+|-...+|.+|+.|+. |..|.+.. .+|+.
T Consensus       269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-~--r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~-~~p~~  343 (464)
T KOG0284|consen  269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-Y--RGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGL-EEPLG  343 (464)
T ss_pred             EEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-h--hcchhhheeeccccccccceeeccCCCc-eEEEeccc-ccccc
Confidence            99999 799999999999999999996553322 3  3478899999999999999999999999 99999875 34443


Q ss_pred             -EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          250 -VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       250 -~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                       .-.+|...|++++|+|-| .+|++|+.|.++++|.-....
T Consensus       344 ~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  344 EIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             CCCcccccceeeeeccccc-eeEeecCCCcceeeeccCCCC
Confidence             445799999999999999 799999999999999765544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.5e-36  Score=233.71  Aligned_cols=287  Identities=14%  Similarity=0.155  Sum_probs=234.5

Q ss_pred             eeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           11 VHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        11 ~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      +.+| .|.++|++++.+|+   .+++|+|+    .|..-.||+.....  +..  .+ .+|...|+++.|+.++     .
T Consensus        57 ~~tF~~H~~svFavsl~P~---~~l~aTGG----gDD~AflW~~~~ge--~~~--el-tgHKDSVt~~~Fshdg-----t  119 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPN---NNLVATGG----GDDLAFLWDISTGE--FAG--EL-TGHKDSVTCCSFSHDG-----T  119 (399)
T ss_pred             eeehhhcCCceEEEEeCCC---CceEEecC----CCceEEEEEccCCc--cee--Ee-cCCCCceEEEEEccCc-----e
Confidence            3444 48999999999999   99999999    89999997776554  332  22 7999999999999999     9


Q ss_pred             eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307           90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  167 (339)
                      +||+|+ + .|+||...++.  ....+...-     ..|.-+.|+| .+..|++|+.||.+.+|.+.++...+.+.+|..
T Consensus       120 lLATGdmsG~v~v~~~stg~--~~~~~~~e~-----~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~  191 (399)
T KOG0296|consen  120 LLATGDMSGKVLVFKVSTGG--EQWKLDQEV-----EDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS  191 (399)
T ss_pred             EEEecCCCccEEEEEcccCc--eEEEeeccc-----CceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence            999998 4 99999999987  444443222     6788999999 999999999999999999999888889999999


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---------------------------------------
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP---------------------------------------  207 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------------------------  207 (339)
                      ++++=.|. +|+.++++..||+|++|++.+++....+....                                       
T Consensus       192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence            99999999 89999999999999999999886444332100                                       


Q ss_pred             ---------CCCCCeEEEEEecC--CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC
Q 040307          208 ---------VQDCPLLRLEWNKA--DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD  276 (339)
Q Consensus       208 ---------~~~~~v~~~~~~p~--~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  276 (339)
                               .+...+.++.+.|.  .-.+.|+|+.||+ |.|||+.. .. ++....|...|..+.|-++  .+|++++.
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~-~~-~R~~c~he~~V~~l~w~~t--~~l~t~c~  346 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT-IAIYDLAA-ST-LRHICEHEDGVTKLKWLNT--DYLLTACA  346 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccccccchhhcccccce-EEEEeccc-ch-hheeccCCCceEEEEEcCc--chheeecc
Confidence                     01111222222221  3357789999999 99999986 33 4555568999999999994  58999999


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          277 DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       277 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|.|+.||.+++.            ......+|...|.+++.+|+.+.+++++.|++.+||++
T Consensus       347 ~g~v~~wDaRtG~------------l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  347 NGKVRQWDARTGQ------------LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             CceEEeeeccccc------------eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            9999999999998            33466689999999999999999999999999999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-35  Score=241.45  Aligned_cols=293  Identities=17%  Similarity=0.214  Sum_probs=229.1

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |..=|.|+.|+||   |.++|+++    .||++.|  ++-.+++......-..+|.+.|.+|+|+||+     ..+++++
T Consensus       189 HskFV~~VRysPD---G~~Fat~g----sDgki~i--yDGktge~vg~l~~~~aHkGsIfalsWsPDs-----~~~~T~S  254 (603)
T KOG0318|consen  189 HSKFVNCVRYSPD---GSRFATAG----SDGKIYI--YDGKTGEKVGELEDSDAHKGSIFALSWSPDS-----TQFLTVS  254 (603)
T ss_pred             cccceeeEEECCC---CCeEEEec----CCccEEE--EcCCCccEEEEecCCCCccccEEEEEECCCC-----ceEEEec
Confidence            4567999999999   99999999    7999999  5565666555212234799999999999999     6666665


Q ss_pred             -C-cEEEEeecCCcceeEEEeec--------------------------------------CCCccCCCCEEEEEEcCCC
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNS--------------------------------------NKTSEFSSAITSFDWAGFD  135 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~  135 (339)
                       | +++|||+.+.+  +..++.-                                      +.-.+|...|+++..+| +
T Consensus       255 aDkt~KIWdVs~~s--lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d  331 (603)
T KOG0318|consen  255 ADKTIKIWDVSTNS--LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-D  331 (603)
T ss_pred             CCceEEEEEeeccc--eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-C
Confidence             6 99999998764  1111110                                      01224559999999998 8


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcc-----------eee-
Q 040307          136 TRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKER-----------STI-  202 (339)
Q Consensus       136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~-  202 (339)
                      +++|++|+.||.|.-|+..++..-+.. +.|...|.+++-+....+++++.|.++++.++.....           +.- 
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l  411 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL  411 (603)
T ss_pred             CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence            999999999999999999988765544 6799999999998667788899999999997743310           000 


Q ss_pred             ------------------EEeC------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCC
Q 040307          203 ------------------IYEN------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGS  257 (339)
Q Consensus       203 ------------------~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~  257 (339)
                                        +...      -.-.....+++++| +++.+++|+.|+. |+||.+.... .....+..|.++
T Consensus       412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~  489 (603)
T KOG0318|consen  412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAA  489 (603)
T ss_pred             EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccce-EEEEEecCCcccceeeeecccCC
Confidence                              0000      00123456789998 9999999999999 9999998643 344467789999


Q ss_pred             eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          258 VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      |+.+++||++ .+||+|...+.+.+||....+           .......-|.+.|.+++|+|+...+++++.|..|.||
T Consensus       490 iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~-----------~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  490 ITDVAYSPDG-AYLAAGDASRKVVLYDVASRE-----------VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             ceEEEECCCC-cEEEEeccCCcEEEEEcccCc-----------eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence            9999999999 699999999999999999988           1122333489999999999999988899999999999


Q ss_pred             eC
Q 040307          338 KV  339 (339)
Q Consensus       338 ~v  339 (339)
                      .|
T Consensus       558 sv  559 (603)
T KOG0318|consen  558 SV  559 (603)
T ss_pred             Ec
Confidence            86

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-36  Score=231.10  Aligned_cols=243  Identities=20%  Similarity=0.275  Sum_probs=210.1

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      ..+|.+.|+.+.|+|++     .+||+|+ | .|.+|++.... +....+++|+     ++|+.+.|.+ +++.|++++.
T Consensus        43 l~gh~geI~~~~F~P~g-----s~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHs-----gAVM~l~~~~-d~s~i~S~gt  110 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDG-----SCFASGGSDRAIVLWNVYGDC-ENFWVLKGHS-----GAVMELHGMR-DGSHILSCGT  110 (338)
T ss_pred             cCCCcceEEEEEECCCC-----CeEeecCCcceEEEEeccccc-cceeeecccc-----ceeEeeeecc-CCCEEEEecC
Confidence            36899999999999999     8999988 6 99999976553 4667788998     9999999997 9999999999


Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      |.+|+.||+++++..+.+++|.+-|+.+.-+  ...++.+++.|+++++||+|+......+.    .+.+++++.|. +.
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~f~-d~  185 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVGFK-DT  185 (338)
T ss_pred             CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEEec-cc
Confidence            9999999999999999999999999999876  46788899999999999999887554432    24789999999 58


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                      +..+.+|+-|+. |++||++. ......+.+|...|+.+..+|+| .++.+-+.|.++++||++....          .+
T Consensus       186 s~qv~sggIdn~-ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p----------~~  252 (338)
T KOG0265|consen  186 SDQVISGGIDND-IKVWDLRK-NDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAP----------SQ  252 (338)
T ss_pred             ccceeeccccCc-eeeecccc-CcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCC----------CC
Confidence            899999999999 99999998 67789999999999999999999 5999999999999999998771          11


Q ss_pred             c-eee-ecc----cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          303 P-ELC-YQS----MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       303 ~-~~~-~~~----~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      + +.+ .+|    .......+|+|++..+-+++.|+.+.+|+.
T Consensus       253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence            2 222 232    334678899999998889999999999973

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=250.70  Aligned_cols=292  Identities=17%  Similarity=0.229  Sum_probs=241.7

Q ss_pred             CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++.+.++. |...|.++.|.|.  .+.+|++++    .|+.|+||++-.+...+.   ++ .+|..+|..++|++++  
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~--~~hLlLS~g----mD~~vklW~vy~~~~~lr---tf-~gH~k~Vrd~~~s~~g--  270 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPK--KGHLLLSGG----MDGLVKLWNVYDDRRCLR---TF-KGHRKPVRDASFNNCG--  270 (503)
T ss_pred             cHhheeeccCCccccchhhhccc--eeeEEEecC----CCceEEEEEEecCcceeh---hh-hcchhhhhhhhccccC--
Confidence            455556654 7899999999994  288999999    699999999876444443   44 7999999999999999  


Q ss_pred             CCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307           86 LNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV  163 (339)
Q Consensus        86 ~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  163 (339)
                         .-+.+++ | .+++||+++++  +...+...      ..++++.|+|.+.+.|++|+.|+.|+.||+++++.++.+.
T Consensus       271 ---~~fLS~sfD~~lKlwDtETG~--~~~~f~~~------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd  339 (503)
T KOG0282|consen  271 ---TSFLSASFDRFLKLWDTETGQ--VLSRFHLD------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD  339 (503)
T ss_pred             ---Ceeeeeecceeeeeeccccce--EEEEEecC------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence               5555655 8 99999999998  77777654      4789999999555999999999999999999999999999


Q ss_pred             ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      .|-+.|..+.|- ++..+++.+.|+++++|+.+.+.....+...  ......++..+| ++.++++-+.++. |.+|.+.
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P-~~~~~~aQs~dN~-i~ifs~~  415 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHP-NGKWFAAQSMDNY-IAIFSTV  415 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch--hhccCcceecCC-CCCeehhhccCce-EEEEecc
Confidence            999999999999 7999999999999999999998766555554  334567889998 8999999999998 9999875


Q ss_pred             CCC--CceEEEecCC--CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307          243 FPT--NPVVVLSKHE--GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW  318 (339)
Q Consensus       243 ~~~--~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (339)
                      ...  .....+.+|.  +.-..+.||||| .+|++|+.||.+.+||.++.+            .......|..++..+.|
T Consensus       416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k------------l~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK------------LVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             cccccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh------------hhhccccCCcceEEEEe
Confidence            422  2334566775  345678999999 599999999999999999977            22356678999999999


Q ss_pred             cCCCCc-eEEEecCCeEEEEe
Q 040307          319 SPLELD-WIAIAFVNKLQLLK  338 (339)
Q Consensus       319 ~p~~~~-l~~~~~d~~v~~w~  338 (339)
                      +|..+. +++++.||.|++|+
T Consensus       483 HP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  483 HPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCCcceeEecccCceeEecC
Confidence            998765 55778999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-37  Score=230.00  Aligned_cols=253  Identities=19%  Similarity=0.308  Sum_probs=219.5

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      .+...|...+.+..++|++..  .+.+++++    .||.++||+.......+..   + .+|...|.++.|++-..    
T Consensus        52 ~e~~s~d~~D~LfdV~Wse~~--e~~~~~a~----GDGSLrl~d~~~~s~Pi~~---~-kEH~~EV~Svdwn~~~r----  117 (311)
T KOG0277|consen   52 QECQSYDTEDGLFDVAWSENH--ENQVIAAS----GDGSLRLFDLTMPSKPIHK---F-KEHKREVYSVDWNTVRR----  117 (311)
T ss_pred             EEEEeeecccceeEeeecCCC--cceEEEEe----cCceEEEeccCCCCcchhH---H-HhhhhheEEeccccccc----
Confidence            566778889999999999983  45566666    5999999886555544432   2 68999999999999875    


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      +.+++++ | +|++|+...+.  .+.++.+|.     ..|....|+|..++++++++.|+.+++||++.......+..|.
T Consensus       118 ~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~-----~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~  190 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDPNRPN--SVQTFNGHN-----SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN  190 (311)
T ss_pred             eeEEeeccCCceEeecCCCCc--ceEeecCCc-----cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc
Confidence            5666666 6 99999998887  788899998     9999999999999999999999999999998765555688999


Q ss_pred             CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..+.|+.|+  +.+.+++|+.|+.|++||+|..+.+....  ..|...|+.++|+|....+|++++.|-+ ++|||....
T Consensus       191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~  267 (311)
T KOG0277|consen  191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQ  267 (311)
T ss_pred             ceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--cCCceEEEEEecCcchhhHhhhccccce-EEecccccc
Confidence            999999999  79999999999999999999988665444  3488999999999988999999999999 999999877


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      ...+.+...|..-|..+.|++..+.++|+++-|+.++||+.
T Consensus       268 ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  268 DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            77888888999999999999987789999999999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=241.15  Aligned_cols=282  Identities=18%  Similarity=0.280  Sum_probs=229.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.+.|.-+.||++   |++||+|+    .|.+..||....+.. +....++ .+|..+|..+.||||.     ++|++|
T Consensus       222 ~htdEVWfl~FS~n---GkyLAsaS----kD~Taiiw~v~~d~~-~kl~~tl-vgh~~~V~yi~wSPDd-----ryLlaC  287 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHN---GKYLASAS----KDSTAIIWIVVYDVH-FKLKKTL-VGHSQPVSYIMWSPDD-----RYLLAC  287 (519)
T ss_pred             hCCCcEEEEEEcCC---CeeEeecc----CCceEEEEEEecCcc-eeeeeee-ecccCceEEEEECCCC-----CeEEec
Confidence            47899999999999   99999999    899999999877665 4443344 6999999999999999     777777


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYD  171 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~  171 (339)
                      + + .+.+||+.+++  ....+...    +...+.+.+|.| |+..+++|+.|+.+..||+... .+...++- ...|.+
T Consensus       288 g~~e~~~lwDv~tgd--~~~~y~~~----~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~d  359 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGD--LRHLYPSG----LGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHD  359 (519)
T ss_pred             CchHheeeccCCcch--hhhhcccC----cCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEE
Confidence            6 5 99999999997  44444332    115788999999 9999999999999999999644 34444332 246899


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      ++.. +|.++++.+.|..|++++.........+.+    ..+++++..+. +++++++.=.+.. +++||+.. ...+..
T Consensus       360 lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise----~~~its~~iS~-d~k~~LvnL~~qe-i~LWDl~e-~~lv~k  432 (519)
T KOG0293|consen  360 LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE----EQPITSFSISK-DGKLALVNLQDQE-IHLWDLEE-NKLVRK  432 (519)
T ss_pred             EEEcCCCcEEEEEecccceeeechhhhhhhccccc----cCceeEEEEcC-CCcEEEEEcccCe-eEEeecch-hhHHHH
Confidence            9999 899999999999999999887765544333    36899999996 8898888777777 99999995 677788


Q ss_pred             EecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE-
Q 040307          251 LSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI-  326 (339)
Q Consensus       251 ~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~-  326 (339)
                      +.+|+..  +..-+|--..+.++++|++|+.|+||+...++             ++ ...+|...|++|+|+|..+.++ 
T Consensus       433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-------------ll~~LsGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-------------LLAVLSGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc-------------eeEeecCCcceeeEEecCCCCHHHhh
Confidence            8888764  44445655444799999999999999999988             55 6668999999999999988766 


Q ss_pred             EEecCCeEEEEe
Q 040307          327 AIAFVNKLQLLK  338 (339)
Q Consensus       327 ~~~~d~~v~~w~  338 (339)
                      ++++||+||||.
T Consensus       500 SasDDgtIRIWg  511 (519)
T KOG0293|consen  500 SASDDGTIRIWG  511 (519)
T ss_pred             ccCCCCeEEEec
Confidence            578999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=220.31  Aligned_cols=272  Identities=14%  Similarity=0.196  Sum_probs=224.0

Q ss_pred             CCceeeeeecc-CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYMAQ-WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~~~-~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      ++....+++|+ ..|..++..|+   ++.||+|+     ...|++||++..+.....  .+ .+|.+.|.++.|..++  
T Consensus        29 tG~C~rTiqh~dsqVNrLeiTpd---k~~LAaa~-----~qhvRlyD~~S~np~Pv~--t~-e~h~kNVtaVgF~~dg--   95 (311)
T KOG0315|consen   29 TGICSRTIQHPDSQVNRLEITPD---KKDLAAAG-----NQHVRLYDLNSNNPNPVA--TF-EGHTKNVTAVGFQCDG--   95 (311)
T ss_pred             cCeEEEEEecCccceeeEEEcCC---cchhhhcc-----CCeeEEEEccCCCCCcee--EE-eccCCceEEEEEeecC--
Confidence            45666777775 58999999999   99999999     799999999887765544  55 5899999999999999  


Q ss_pred             CCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-
Q 040307           86 LNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-  162 (339)
Q Consensus        86 ~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-  162 (339)
                         +.+.+|++  +++|||++...  +.+.++ +.     ++|+++..+| +...|++|..+|.|++||+....+...+ 
T Consensus        96 ---rWMyTgseDgt~kIWdlR~~~--~qR~~~-~~-----spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   96 ---RWMYTGSEDGTVKIWDLRSLS--CQRNYQ-HN-----SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             ---eEEEecCCCceEEEEeccCcc--cchhcc-CC-----CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccC
Confidence               99999995  99999999854  444443 33     7999999999 8889999999999999999887665554 


Q ss_pred             eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceee---EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307          163 VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTI---IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV  238 (339)
Q Consensus       163 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i  238 (339)
                      ......|.++... ++..++.+...|++++|++-.......   +.+.+.|.+.+..+.++| ++++||+++.|.+ ++|
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdkt-v~i  241 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKT-VKI  241 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCce-EEE
Confidence            3445678999998 899999999999999999987543222   222345888999999999 9999999999999 999


Q ss_pred             EecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307          239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW  318 (339)
Q Consensus       239 ~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (339)
                      |+....-+....+.+|...++.++||.++ .+|+|++.|+.+++|++...+            +.....+|.....+++.
T Consensus       242 wn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k------------~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  242 WNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGK------------EVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             EecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCc------------eeeecCCcccccEEEEe
Confidence            99988646667889999999999999999 599999999999999999988            23344456555555543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-36  Score=260.86  Aligned_cols=281  Identities=14%  Similarity=0.177  Sum_probs=241.6

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      ..+|-.++|+|.   ...++++-    ..|.|++||+......-..     .+|.++|..+.|+|..     .++++|||
T Consensus         9 SsRvKglsFHP~---rPwILtsl----HsG~IQlWDYRM~tli~rF-----deHdGpVRgv~FH~~q-----plFVSGGD   71 (1202)
T KOG0292|consen    9 SSRVKGLSFHPK---RPWILTSL----HSGVIQLWDYRMGTLIDRF-----DEHDGPVRGVDFHPTQ-----PLFVSGGD   71 (1202)
T ss_pred             cccccceecCCC---CCEEEEee----cCceeeeehhhhhhHHhhh-----hccCCccceeeecCCC-----CeEEecCC
Confidence            468999999999   89999998    6999999998876544443     6899999999999999     89999996


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                        .|++|+..+.+  ++.++.+|-     .-|..+.|++ .--.|+++|.|.+|+||+..+.+++..+.+|...|.|.+|
T Consensus        72 DykIkVWnYk~rr--clftL~GHl-----DYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF  143 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRR--CLFTLLGHL-----DYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF  143 (1202)
T ss_pred             ccEEEEEecccce--ehhhhcccc-----ceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence              99999999987  999999998     8999999997 8899999999999999999999999999999999999999


Q ss_pred             cC-CcEEEEEeCCCcEEEEECCCCccee--------------------------eEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          175 GG-FNVFASVSGDCSVRVFDLRDKERST--------------------------IIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       175 ~~-~~~l~~~~~d~~i~i~d~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      +| .++++++|-|.+|++||+...+...                          ......+|+..|+-++|+| .-.+|+
T Consensus       144 hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliV  222 (1202)
T KOG0292|consen  144 HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIV  222 (1202)
T ss_pred             CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEE
Confidence            95 8899999999999999986432110                          0011234888999999998 888999


Q ss_pred             EEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-e
Q 040307          228 TVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-L  305 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~  305 (339)
                      +|+.|.. |++|.+.... -.+-+..+|...|.++-|+|.. .++++.++|++|+|||+....             ++ .
T Consensus       223 SG~DDRq-VKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt-------------~v~t  287 (1202)
T KOG0292|consen  223 SGADDRQ-VKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRT-------------SVQT  287 (1202)
T ss_pred             ecCCcce-eeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccccc-------------ceee
Confidence            9999988 9999987522 1345678999999999999998 599999999999999999987             44 4


Q ss_pred             eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .....+..+.++-+|... |++++.|+.+.+|++
T Consensus       288 frrendRFW~laahP~lN-LfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  288 FRRENDRFWILAAHPELN-LFAAGHDSGMIVFKL  320 (1202)
T ss_pred             eeccCCeEEEEEecCCcc-eeeeecCCceEEEEE
Confidence            444567899999999986 888888888888764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-35  Score=249.12  Aligned_cols=298  Identities=15%  Similarity=0.214  Sum_probs=241.0

Q ss_pred             eeeeec-cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           11 VHTYMA-QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        11 ~~~~~~-~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      ++...- ..+|..++|+..   |+.||.|+.   .-|.+-||+|+.+.-.+.+     .+|...+++++++|||     +
T Consensus       300 ih~LSis~~~I~t~~~N~t---GDWiA~g~~---klgQLlVweWqsEsYVlKQ-----QgH~~~i~~l~YSpDg-----q  363 (893)
T KOG0291|consen  300 IHSLSISDQKILTVSFNST---GDWIAFGCS---KLGQLLVWEWQSESYVLKQ-----QGHSDRITSLAYSPDG-----Q  363 (893)
T ss_pred             EEEeecccceeeEEEeccc---CCEEEEcCC---ccceEEEEEeeccceeeec-----cccccceeeEEECCCC-----c
Confidence            344443 478999999999   999999994   4579999999998877776     7999999999999999     8


Q ss_pred             eEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC-
Q 040307           90 IVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD-  166 (339)
Q Consensus        90 ~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-  166 (339)
                      ++|+|++  .|+|||...+-  +..+|..|+     ..|+.+.|+. .++.+++++.||+|+.||+...+..+++.... 
T Consensus       364 ~iaTG~eDgKVKvWn~~Sgf--C~vTFteHt-----s~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  364 LIATGAEDGKVKVWNTQSGF--CFVTFTEHT-----SGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             EEEeccCCCcEEEEeccCce--EEEEeccCC-----CceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence            9999985  99999999887  999999999     9999999996 99999999999999999999999999886432 


Q ss_pred             CceeEEEec-CCcEEEEEeCCC-cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          167 REVYDISWG-GFNVFASVSGDC-SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      -...|++.. .|.++.+|+.|. .|.+|++.+++....+ .  +|+++|.+++|+| .++.|++++-|.+ |++||+-..
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-s--GHEgPVs~l~f~~-~~~~LaS~SWDkT-VRiW~if~s  510 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-S--GHEGPVSGLSFSP-DGSLLASGSWDKT-VRIWDIFSS  510 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-c--CCCCcceeeEEcc-ccCeEEeccccce-EEEEEeecc
Confidence            234455555 377777887775 5999999999854443 3  3899999999998 9999999999999 999999765


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC-CCCC----CCCCc-ccceee--ecccceeEEE
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR-SGNG----GPSGD-VEPELC--YQSMAEINVV  316 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~----~~~~~-~~~~~~--~~~~~~i~~~  316 (339)
                      ...+.++. +...+..++|.|+| +.|++++.||.|.+||....... ..++    .+... .+.+..  .......+.+
T Consensus       511 ~~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti  588 (893)
T KOG0291|consen  511 SGTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI  588 (893)
T ss_pred             CceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence            45566665 46789999999999 69999999999999999876520 0000    00000 011111  1124579999


Q ss_pred             EecCCCCceEEEecCCeEEEEeC
Q 040307          317 RWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       317 ~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++++||..++++|..+.|.+|++
T Consensus       589 ~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  589 CYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             EEcCCCCEEEecCCcccEEEEEC
Confidence            99999999999999999999985

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.6e-35  Score=237.74  Aligned_cols=286  Identities=16%  Similarity=0.211  Sum_probs=242.6

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      +|..+++-..|||.   |.++|+|.    ..|+|+||++..++..+..  .+ ....++|..++|+.++.    +++|+|
T Consensus        57 EH~~~vtVAkySPs---G~yiASGD----~sG~vRIWdtt~~~hiLKn--ef-~v~aG~I~Di~Wd~ds~----RI~avG  122 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPS---GFYIASGD----VSGKVRIWDTTQKEHILKN--EF-QVLAGPIKDISWDFDSK----RIAAVG  122 (603)
T ss_pred             cccceeEEEEeCCC---ceEEeecC----CcCcEEEEeccCcceeeee--ee-eecccccccceeCCCCc----EEEEEe
Confidence            47788999999999   99999999    7999999887665433332  34 45789999999999994    555666


Q ss_pred             CC-----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce
Q 040307           95 GD-----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV  169 (339)
Q Consensus        95 ~~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v  169 (339)
                      -+     .+.+||.  +.  .+..+.+|.     ..|++++|-|...-.+++|++|++|.+|+-.-.+...++..|..-|
T Consensus       123 EGrerfg~~F~~DS--G~--SvGei~GhS-----r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV  193 (603)
T KOG0318|consen  123 EGRERFGHVFLWDS--GN--SVGEITGHS-----RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFV  193 (603)
T ss_pred             cCccceeEEEEecC--CC--ccceeeccc-----eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccce
Confidence            43     5666664  44  567788888     9999999999788899999999999999987777777888999999


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT---  245 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---  245 (339)
                      +|+.|+ ++++|++++.||++.+||-.+++....+.....|++.|..++|+| ++..+++++.|.+ ++|||+....   
T Consensus       194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt-~KIWdVs~~slv~  271 (603)
T KOG0318|consen  194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKT-IKIWDVSTNSLVS  271 (603)
T ss_pred             eeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCce-EEEEEeeccceEE
Confidence            999999 899999999999999999999998877776778999999999999 9999999999999 9999997632   


Q ss_pred             ---------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          246 ---------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       246 ---------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                                                             .++..+.+|...|++++.+|++ ++|++|+.||.|.-|+..
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSG  350 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecC
Confidence                                                   3445567899999999999999 799999999999999999


Q ss_pred             CCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          287 GPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .+.           -.++.-..|...|.+++-+..+. +++.+.|.+|++..
T Consensus       351 ~g~-----------~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~  390 (603)
T KOG0318|consen  351 SGT-----------SDRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVIS  390 (603)
T ss_pred             Ccc-----------ccccccccccceEEEEeecCCCc-EEEEecCCeEEEEe
Confidence            987           12333467999999999888764 99999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.3e-37  Score=240.34  Aligned_cols=276  Identities=17%  Similarity=0.292  Sum_probs=227.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ....|+|+.+..+     .+++|.    .|++|+|||.+.  ..+..  .+ .+|.+.|.|+.|..       +++++|+
T Consensus       196 ~skgVYClQYDD~-----kiVSGl----rDnTikiWD~n~--~~c~~--~L-~GHtGSVLCLqyd~-------rviisGS  254 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE-----KIVSGL----RDNTIKIWDKNS--LECLK--IL-TGHTGSVLCLQYDE-------RVIVSGS  254 (499)
T ss_pred             cCCceEEEEecch-----hhhccc----ccCceEEecccc--HHHHH--hh-hcCCCcEEeeeccc-------eEEEecC
Confidence            3468999998655     799999    799999966543  33332  33 79999999999864       7888887


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccCCcee
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHDREVY  170 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~v~  170 (339)
                       | +|++||+++++  ++.++-+|.     .+|..+.|+   +.++++++.|.++.+||+....   +.+.+.+|...|+
T Consensus       255 SDsTvrvWDv~tge--~l~tlihHc-----eaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGE--PLNTLIHHC-----EAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             CCceEEEEeccCCc--hhhHHhhhc-----ceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence             5 99999999998  888888887     899999996   4799999999999999997765   4456789999999


Q ss_pred             EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          171 DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      .+.|+ .+++++++.|.+|++|++.+.+....+   .+|+..|.++.+   .++++++|+.|.+ |++||+.. +.++..
T Consensus       325 vVdfd-~kyIVsASgDRTikvW~~st~efvRtl---~gHkRGIAClQY---r~rlvVSGSSDnt-IRlwdi~~-G~cLRv  395 (499)
T KOG0281|consen  325 VVDFD-DKYIVSASGDRTIKVWSTSTCEFVRTL---NGHKRGIACLQY---RDRLVVSGSSDNT-IRLWDIEC-GACLRV  395 (499)
T ss_pred             eeccc-cceEEEecCCceEEEEeccceeeehhh---hcccccceehhc---cCeEEEecCCCce-EEEEeccc-cHHHHH
Confidence            99998 569999999999999999998854443   237778888876   7899999999999 99999998 788999


Q ss_pred             EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      +++|+.-|.++.|..   +.+++|+.||+|++||+.... +|.  .+.+.+.......|.+.|..+.|..-  .+++++.
T Consensus       396 LeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aal-dpr--a~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssH  467 (499)
T KOG0281|consen  396 LEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAAL-DPR--APASTLCLRTLVEHSGRVFRLQFDEF--QIISSSH  467 (499)
T ss_pred             HhchHHhhhheeecC---ceeeeccccceEEEEeccccc-CCc--ccccchHHHhhhhccceeEEEeecce--EEEeccC
Confidence            999999999999974   479999999999999999877 221  11111222244578999999999553  6899999


Q ss_pred             CCeEEEEeC
Q 040307          331 VNKLQLLKV  339 (339)
Q Consensus       331 d~~v~~w~v  339 (339)
                      |.+|.+|+.
T Consensus       468 ddtILiWdF  476 (499)
T KOG0281|consen  468 DDTILIWDF  476 (499)
T ss_pred             CCeEEEEEc
Confidence            999999983

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.6e-35  Score=218.88  Aligned_cols=239  Identities=22%  Similarity=0.340  Sum_probs=203.3

Q ss_pred             ecCCCCceEEEEcCC-CCCCCCCeEEEeCC--cEEEEeecC-CcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           68 FDHPYTPTNIAFFPS-EETLNPDIVATSGD--SLRLWEIHD-DRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~-~~~~~~~~la~~~~--~i~iw~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .+|.+++..++|+|- |     .+||+|+.  .|+||+... ..+.+...+. +|+     ..|++++|+| .+++|+++
T Consensus        11 ~gh~~r~W~~awhp~~g-----~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk-----rsVRsvAwsp-~g~~La~a   79 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKG-----VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK-----RSVRSVAWSP-HGRYLASA   79 (312)
T ss_pred             cCCCCcEEEEEeccCCc-----eEEEeecCCceEEEEecCCCCcEEEEEeccccch-----heeeeeeecC-CCcEEEEe
Confidence            689999999999998 7     79999984  999999984 3344555443 455     8999999999 99999999


Q ss_pred             eCCCeEEEEECCCC--eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          143 SVDTTCVIWDIDRE--ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       143 ~~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      +.|.++.||.-..+  +++..+.+|.+.|.|++|+ ++++||++++|+.|-||.+..............|...|..+.|+
T Consensus        80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence            99999999987654  5888999999999999999 89999999999999999998766544444444588899999999


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCC--CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRF--PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  297 (339)
                      | ...+|++++.|++ |++|+-..  .-.+.+++.+|...|.+++|+|.| ..|++++.|++++||.....-        
T Consensus       160 P-t~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~--------  228 (312)
T KOG0645|consen  160 P-TEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL--------  228 (312)
T ss_pred             C-CcceeEEeccCCe-EEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc--------
Confidence            9 8899999999999 99997652  235788999999999999999999 599999999999999866432        


Q ss_pred             CCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          298 SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                              ...|...++.+.|. ++ .+++++.|+.|++|+
T Consensus       229 --------~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  229 --------SGMHSRALYDVPWD-NG-VIASGGGDDAIRLFK  259 (312)
T ss_pred             --------chhcccceEeeeec-cc-ceEeccCCCEEEEEE
Confidence                    22467789999999 55 477899999999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=239.98  Aligned_cols=277  Identities=16%  Similarity=0.197  Sum_probs=231.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ..++|.+++|||..  ..-+|+.+     .-.+.||+..  +.....  .+ ......|+++.|..||     ++||+|.
T Consensus        25 e~~~vssl~fsp~~--P~d~aVt~-----S~rvqly~~~--~~~~~k--~~-srFk~~v~s~~fR~DG-----~LlaaGD   87 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKH--PYDFAVTS-----SVRVQLYSSV--TRSVRK--TF-SRFKDVVYSVDFRSDG-----RLLAAGD   87 (487)
T ss_pred             ccCcceeEecCCCC--CCceEEec-----ccEEEEEecc--hhhhhh--hH-HhhccceeEEEeecCC-----eEEEccC
Confidence            35789999999962  34466666     5789995544  333222  12 4567889999999999     8999998


Q ss_pred             C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      +  .|+|+|..+..  .+..+..|+     .++..+.|+|.++..+++|+.|+.+++||+.+......+.+|++.|.|.+
T Consensus        88 ~sG~V~vfD~k~r~--iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~  160 (487)
T KOG0310|consen   88 ESGHVKVFDMKSRV--ILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD  160 (487)
T ss_pred             CcCcEEEeccccHH--HHHHHhhcc-----CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence            5  99999965543  667888888     99999999998999999999999999999999887668899999999999


Q ss_pred             ec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          174 WG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      |+  .+.++++|+.||.|++||+|........+   .|..+|.++.+-| .|..+++++.+.  +++||+..+++.+..+
T Consensus       161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---nhg~pVe~vl~lp-sgs~iasAgGn~--vkVWDl~~G~qll~~~  234 (487)
T KOG0310|consen  161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---NHGCPVESVLALP-SGSLIASAGGNS--VKVWDLTTGGQLLTSM  234 (487)
T ss_pred             cccCCCeEEEecCCCceEEEEEeccCCceeEEe---cCCCceeeEEEcC-CCCEEEEcCCCe--EEEEEecCCceehhhh
Confidence            99  46789999999999999999986222222   3678999999998 889998877654  9999999878888888


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      ..|...|+|+++..++ ..|++++-|+.|++||+.+.+             ........++|.+++.+|+++.+++|-.|
T Consensus       235 ~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K-------------vv~s~~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  235 FNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK-------------VVHSWKYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             hcccceEEEEEeecCC-ceEeecccccceEEEEccceE-------------EEEeeecccceeeEEecCCCceEEEeccc
Confidence            8899999999999998 699999999999999988776             55666788999999999999989999899


Q ss_pred             CeEEE
Q 040307          332 NKLQL  336 (339)
Q Consensus       332 ~~v~~  336 (339)
                      |.+.+
T Consensus       301 Glv~~  305 (487)
T KOG0310|consen  301 GLVSI  305 (487)
T ss_pred             ceeee
Confidence            88765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.3e-35  Score=214.56  Aligned_cols=275  Identities=16%  Similarity=0.221  Sum_probs=226.6

Q ss_pred             eeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307           10 GVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus        10 ~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      .+..+ .++++|.++.|+-+   |+|.++++    .|.+|++  |++..+.+..  ++ .+|...|..++.+.|.     
T Consensus         9 r~~~l~~~qgaV~avryN~d---GnY~ltcG----sdrtvrL--WNp~rg~lik--tY-sghG~EVlD~~~s~Dn-----   71 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVD---GNYCLTCG----SDRTVRL--WNPLRGALIK--TY-SGHGHEVLDAALSSDN-----   71 (307)
T ss_pred             hceeecccccceEEEEEccC---CCEEEEcC----CCceEEe--ecccccceee--ee-cCCCceeeeccccccc-----
Confidence            33433 36789999999999   99999988    7999999  5555555554  44 6899999999999998     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC--eeeeeeec
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE--ILETQLVA  164 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~  164 (339)
                      .-+++|+ | .+.+||+++++  ..+.+.+|.     +.|+.+.|+. +...+++|+.|.++++||.++.  ++++.+..
T Consensus        72 skf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~-----aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQilde  143 (307)
T KOG0316|consen   72 SKFASCGGDKAVQVWDVNTGK--VDRRFRGHL-----AQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDE  143 (307)
T ss_pred             cccccCCCCceEEEEEcccCe--eeeeccccc-----ceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhh
Confidence            5666655 6 99999999998  889999998     9999999996 8899999999999999998764  58888888


Q ss_pred             cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..+.|.++... +..|++|+.||+++.||+|.+....-.     -..+|+++.|++ +++..++++.++. +++.|-.+ 
T Consensus       144 a~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~-d~nc~La~~l~st-lrLlDk~t-  214 (307)
T KOG0316|consen  144 AKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSK-DGNCSLASSLDST-LRLLDKET-  214 (307)
T ss_pred             hcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhh-----cCCcceeEEecC-CCCEEEEeeccce-eeecccch-
Confidence            88899999887 778999999999999999998844332     235999999998 9999999999999 99999887 


Q ss_pred             CCceEEEecCCCCeeE--EEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccce-eEEEEecC
Q 040307          245 TNPVVVLSKHEGSVNG--ISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAE-INVVRWSP  320 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~--~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~~p  320 (339)
                      ++.+....+|...-+.  .+++... ..+++|++||.|.+||+....             .+... .+... |.+++++|
T Consensus       215 GklL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~-------------~~sk~~~~~~v~v~dl~~hp  280 (307)
T KOG0316|consen  215 GKLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDET-------------QISKLSVVSTVIVTDLSCHP  280 (307)
T ss_pred             hHHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccce-------------eeeeeccCCceeEEeeeccc
Confidence            7889999999875544  4555555 589999999999999999987             33333 34444 89999999


Q ss_pred             CCCceEEEecCC
Q 040307          321 LELDWIAIAFVN  332 (339)
Q Consensus       321 ~~~~l~~~~~d~  332 (339)
                      .-..++++...+
T Consensus       281 ~~~~f~~A~~~~  292 (307)
T KOG0316|consen  281 TMDDFITATGHG  292 (307)
T ss_pred             CccceeEecCCc
Confidence            987777655433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=250.74  Aligned_cols=285  Identities=19%  Similarity=0.277  Sum_probs=220.0

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |+.||.-++|+|.   +.+||+|+    .|+.+++||+.........     .+|++.|.++.|+|+-..   .+|++|.
T Consensus       104 He~Pvi~ma~~~~---g~LlAtgg----aD~~v~VWdi~~~~~th~f-----kG~gGvVssl~F~~~~~~---~lL~sg~  168 (775)
T KOG0319|consen  104 HEAPVITMAFDPT---GTLLATGG----ADGRVKVWDIKNGYCTHSF-----KGHGGVVSSLLFHPHWNR---WLLASGA  168 (775)
T ss_pred             cCCCeEEEEEcCC---CceEEecc----ccceEEEEEeeCCEEEEEe-----cCCCceEEEEEeCCccch---hheeecC
Confidence            6899999999999   99999999    7999999888765444433     799999999999998742   5677776


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-----------------
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-----------------  156 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-----------------  156 (339)
                       | .+++||+.+... ++.++..|.     +.|++++|++ ++..+++++.|..+.+||+.+.                 
T Consensus       169 ~D~~v~vwnl~~~~t-cl~~~~~H~-----S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~  241 (775)
T KOG0319|consen  169 TDGTVRVWNLNDKRT-CLHTMILHK-----SAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVR  241 (775)
T ss_pred             CCceEEEEEcccCch-HHHHHHhhh-----hheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEE
Confidence             4 999999997653 566777777     8888888887 6777777777777777776431                 


Q ss_pred             --------------------------------------------------------------------------------
Q 040307          157 --------------------------------------------------------------------------------  156 (339)
Q Consensus       157 --------------------------------------------------------------------------------  156 (339)
                                                                                                      
T Consensus       242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG  321 (775)
T KOG0319|consen  242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG  321 (775)
T ss_pred             echhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence                                                                                            


Q ss_pred             ------------------------e----------eeeeeeccCCceeEEE-ecCCcEEEEEeCCCcEEEE---------
Q 040307          157 ------------------------I----------LETQLVAHDREVYDIS-WGGFNVFASVSGDCSVRVF---------  192 (339)
Q Consensus       157 ------------------------~----------~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d~~i~i~---------  192 (339)
                                              .          ....+.+|+..|.++. |+.+.+|++|+.|.++++|         
T Consensus       322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~  401 (775)
T KOG0319|consen  322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS  401 (775)
T ss_pred             CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence                                    0          0011223444455554 2234455555555555555         


Q ss_pred             --------------------------------------ECCCCc--ceeeEE----eCCCCCCCeEEEEEecCCCCeEEE
Q 040307          193 --------------------------------------DLRDKE--RSTIIY----ENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       193 --------------------------------------d~~~~~--~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                                                            ++...+  .....+    ....|+..|++++.+| +..++|+
T Consensus       402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT  480 (775)
T KOG0319|consen  402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT  480 (775)
T ss_pred             hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence                                                  444411  011111    1124778999999999 8899999


Q ss_pred             EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eee
Q 040307          229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY  307 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~  307 (339)
                      |+.|.+ .+||++.. ...+..+.+|...|++|.|+|.. ++++|+|.|++|+||.+++..             ++ .+.
T Consensus       481 ~SqDkt-aKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS-------------ClkT~e  544 (775)
T KOG0319|consen  481 GSQDKT-AKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS-------------CLKTFE  544 (775)
T ss_pred             cccccc-eeeecccC-ceEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce-------------eeeeec
Confidence            999999 99999995 67889999999999999999998 799999999999999999988             55 556


Q ss_pred             cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|...|..+.|-.++..|++++.||-+++|++
T Consensus       545 GH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  545 GHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             CccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence            79999999999999999999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-36  Score=223.69  Aligned_cols=287  Identities=16%  Similarity=0.179  Sum_probs=241.5

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      .-++....|..||..++|||-.+.|-+|++++    .|+.-.+  -+.+++.+.-  ++ .+|.+.|++.....+.    
T Consensus         5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~----kd~~pml--r~g~tgdwig--tf-eghkgavw~~~l~~na----   71 (334)
T KOG0278|consen    5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISAS----KDGKPML--RNGDTGDWIG--TF-EGHKGAVWSATLNKNA----   71 (334)
T ss_pred             cCceEEcCCCcceeEEeccCCCCCceEEEEec----cCCCchh--ccCCCCCcEE--ee-eccCcceeeeecCchh----
Confidence            34677888999999999998766699999999    7999888  7777777776  55 6999999999998887    


Q ss_pred             CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeec
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVA  164 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~  164 (339)
                       ...|+++ | +.++||.-++.  .+..++ |+     .-|..++|+. +.++|++|+.+..++|||++..+ +...+.+
T Consensus        72 -~~aasaaadftakvw~a~tgd--elhsf~-hk-----hivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   72 -TRAASAAADFTAKVWDAVTGD--ELHSFE-HK-----HIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             -hhhhhhcccchhhhhhhhhhh--hhhhhh-hh-----heeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence             6666666 6 99999998886  555554 34     6799999996 99999999999999999998765 6677889


Q ss_pred             cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      |.+.|..+.|+ ..+.|++.+.|++||+||.+++.....+...    .+|+++..++ +|++|.++. .++ |.+||...
T Consensus       142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~-dG~ilTia~-gss-V~Fwdaks  214 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQ-DGRILTIAY-GSS-VKFWDAKS  214 (334)
T ss_pred             CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----CCCcceeecc-CCCEEEEec-Cce-eEEecccc
Confidence            99999999999 7888888899999999999999877666544    6899999996 888887643 344 99999987


Q ss_pred             CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCC
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLE  322 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~  322 (339)
                       -.+++.... ...|.+...+|+. ..+++|++|..++.||+.++.            +... ..+|.++|.++.|+|+|
T Consensus       215 -f~~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge------------Ei~~~nkgh~gpVhcVrFSPdG  279 (334)
T KOG0278|consen  215 -FGLLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE------------EIGSYNKGHFGPVHCVRFSPDG  279 (334)
T ss_pred             -ccceeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCc------------eeeecccCCCCceEEEEECCCC
Confidence             445565554 4578999999998 599999999999999999988            3333 46899999999999999


Q ss_pred             CceEEEecCCeEEEEeC
Q 040307          323 LDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       323 ~~l~~~~~d~~v~~w~v  339 (339)
                      ...++++.||+||||++
T Consensus       280 E~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  280 ELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ceeeccCCCceEEEEEe
Confidence            97888999999999974

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.7e-35  Score=238.70  Aligned_cols=294  Identities=14%  Similarity=0.185  Sum_probs=229.3

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +...|.++++.|.   |-+|++|+    .|..|++||++.-...+.....+...-...|++++|++.+.    .+|+..+
T Consensus       166 gtk~Vsal~~Dp~---GaR~~sGs----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~----~iLvvsg  234 (641)
T KOG0772|consen  166 GTKIVSALAVDPS---GARFVSGS----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD----QILVVSG  234 (641)
T ss_pred             CceEEEEeeecCC---Cceeeecc----ccceEEEEecccccccchhhhccCcccccccceeeecCCCC----eEEEEec
Confidence            3568999999999   99999999    79999999998666555543344345567899999999995    5555555


Q ss_pred             C-cEEEEeecCCcceeEEEeecC-------CCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeee---
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSN-------KTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLV---  163 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~---  163 (339)
                      . ..+|+|-+..+  .....++.       ...+|...+++.+|+|.+.+.|++++.||++++||++..+ .+..++   
T Consensus       235 ~aqakl~DRdG~~--~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  235 SAQAKLLDRDGFE--IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             CcceeEEccCCce--eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            5 99999977654  33332221       1234448999999999888999999999999999997654 233332   


Q ss_pred             --ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC--CeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307          164 --AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC--PLLRLEWNKADPRFMATVGMDSNKVVV  238 (339)
Q Consensus       164 --~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d~~~i~i  238 (339)
                        +..-+++.++|+ ++.+||+|+.||.|.+|+.++......+.....|..  .|+++.|++ +|++|++-+.|+. +++
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~t-LKv  390 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDT-LKV  390 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCc-eee
Confidence              233468899999 899999999999999999977654444443344555  899999997 9999999999999 999


Q ss_pred             EecCCCCCceEEEecCC--CCeeEEEeccCCCCeEEEEeC------CCcEEEEEecCCCCCCCCCCCCCcccceeeeccc
Q 040307          239 LDIRFPTNPVVVLSKHE--GSVNGISWAPLYGRRLCSVAD------DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM  310 (339)
Q Consensus       239 ~d~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (339)
                      ||+++..+++....+-.  .+-+.++|||+. ++|++|+.      .|.+.+||..+..            ....+.-..
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d------------~v~ki~i~~  457 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLD------------TVYKIDIST  457 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEecccee------------eEEEecCCC
Confidence            99999888887766533  356789999998 69998873      4789999988877            122333347


Q ss_pred             ceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          311 AEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       311 ~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      ..|..+.|+|.-..+++++.||++++|
T Consensus       458 aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  458 ASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ceEEEEeecchhhheeeecCCCceEEE
Confidence            789999999998889999999999886

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-34  Score=241.07  Aligned_cols=274  Identities=18%  Similarity=0.236  Sum_probs=231.6

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +.++|-++.|+|.   ...++++-    ++|.|.||+++........     .-..-+|.+..|-+..     +.+++|+
T Consensus        12 rSdRVKsVd~HPt---ePw~la~L----ynG~V~IWnyetqtmVksf-----eV~~~PvRa~kfiaRk-----nWiv~Gs   74 (794)
T KOG0276|consen   12 RSDRVKSVDFHPT---EPWILAAL----YNGDVQIWNYETQTMVKSF-----EVSEVPVRAAKFIARK-----NWIVTGS   74 (794)
T ss_pred             cCCceeeeecCCC---CceEEEee----ecCeeEEEecccceeeeee-----eecccchhhheeeecc-----ceEEEec
Confidence            6789999999999   88999988    6999999887765433322     3356789999999988     8999999


Q ss_pred             C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCceeEE
Q 040307           96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREVYDI  172 (339)
Q Consensus        96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v~~~  172 (339)
                      |  .|+||+.++.+  .+..|..|.     .-|++++.+| ...++++++.|-+|++||-+.. .+.+++.+|...|.++
T Consensus        75 DD~~IrVfnynt~e--kV~~FeAH~-----DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   75 DDMQIRVFNYNTGE--KVKTFEAHS-----DYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             CCceEEEEecccce--eeEEeeccc-----cceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            6  99999999998  899999998     9999999999 8899999999999999998755 4778899999999999


Q ss_pred             Eec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          173 SWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       173 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      +|+  +.+.|++++-|++|++|.+.++..... .++  |...|+++.+-+. +.-+|++|+.|.. ++|||.++ ..+++
T Consensus       147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT-l~g--HekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQt-k~CV~  221 (794)
T KOG0276|consen  147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFT-LEG--HEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQT-KSCVQ  221 (794)
T ss_pred             EecCCCccceeeeeccccEEEEEcCCCCCcee-eec--cccCcceEEeccCCCcceEEecCCCce-EEEeecch-HHHHH
Confidence            999  689999999999999999998874433 334  8899999999862 2349999999999 99999998 78999


Q ss_pred             EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      ++.+|...|..+.|+|.-+ ++++|++||+++||+..+..           ++ ....-..++|++++-.+.+.. ++.+
T Consensus       222 TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~-----------lE-~tLn~gleRvW~I~~~k~~~~-i~vG  287 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYK-----------LE-KTLNYGLERVWCIAAHKGDGK-IAVG  287 (794)
T ss_pred             HhhcccccceEEEecCCCc-EEEEecCCccEEEecCccee-----------hh-hhhhcCCceEEEEeecCCCCe-EEEe
Confidence            9999999999999999996 99999999999999998876           11 122234567999998887764 5555


Q ss_pred             cCCe
Q 040307          330 FVNK  333 (339)
Q Consensus       330 ~d~~  333 (339)
                      .|..
T Consensus       288 ~Deg  291 (794)
T KOG0276|consen  288 FDEG  291 (794)
T ss_pred             ccCC
Confidence            4444

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.6e-35  Score=250.92  Aligned_cols=207  Identities=18%  Similarity=0.256  Sum_probs=186.5

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      ....-.-+.|.+||+.++|+|+   .++|++++    +|+++++|.++........     .+|..+|+.+.|+|.|   
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd---~rfLlScS----ED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P~G---  505 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPD---RRFLLSCS----EDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAPRG---  505 (707)
T ss_pred             CceeEEeecCCCceeeeeeccc---ccceeecc----CCcceeeeecccceeEEEe-----cCCCcceeeEEecCCc---
Confidence            3444446679999999999999   99999999    8999999887765544443     6999999999999999   


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                        .++|+++ | +.++|..+...  +.+.+.+|-     +.|.|+.|+| +.+++++||.|.+|++||+.+|..++.+.+
T Consensus       506 --yYFatas~D~tArLWs~d~~~--PlRifaghl-----sDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~G  575 (707)
T KOG0263|consen  506 --YYFATASHDQTARLWSTDHNK--PLRIFAGHL-----SDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTG  575 (707)
T ss_pred             --eEEEecCCCceeeeeecccCC--chhhhcccc-----cccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecC
Confidence              9999998 4 99999999876  889999998     9999999999 999999999999999999999999999999


Q ss_pred             cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      |.++|.+++|+ .|.+|++|+.|+.|.+||+.+++....+..   |.+.|.++.|+. +|..||+|+.|.. |++||+..
T Consensus       576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~-dg~vLasgg~Dns-V~lWD~~~  650 (707)
T KOG0263|consen  576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG---HTGTIYSLSFSR-DGNVLASGGADNS-VRLWDLTK  650 (707)
T ss_pred             CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc---ccCceeEEEEec-CCCEEEecCCCCe-EEEEEchh
Confidence            99999999999 799999999999999999999885555433   588999999997 9999999999999 99999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-34  Score=244.39  Aligned_cols=279  Identities=18%  Similarity=0.232  Sum_probs=234.9

Q ss_pred             cCCeeEEEee-ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           17 QWPISTVAWS-VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        17 ~~~v~~i~~s-p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      .+.|.+++|- |+   .++||+++    ..+.+++|+..  +.....    ..+|...|.++....++     .+||+|+
T Consensus       323 ndEI~Dm~~lG~e---~~~laVAT----Ns~~lr~y~~~--~~~c~i----i~GH~e~vlSL~~~~~g-----~llat~s  384 (775)
T KOG0319|consen  323 NDEILDMKFLGPE---ESHLAVAT----NSPELRLYTLP--TSYCQI----IPGHTEAVLSLDVWSSG-----DLLATGS  384 (775)
T ss_pred             chhheeeeecCCc---cceEEEEe----CCCceEEEecC--CCceEE----EeCchhheeeeeecccC-----cEEEEec
Confidence            4688999876 55   78999999    59999997443  333332    37999999999966677     7999999


Q ss_pred             -C-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-----ee----eee
Q 040307           96 -D-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-----LE----TQL  162 (339)
Q Consensus        96 -~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-----~~----~~~  162 (339)
                       | ++++|.++++.  ..++....+|.     ..|.+++++.....+|+++|.|+++++|++...+     ..    ...
T Consensus       385 KD~svilWr~~~~~~~~~~~a~~~gH~-----~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~  459 (775)
T KOG0319|consen  385 KDKSVILWRLNNNCSKSLCVAQANGHT-----NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE  459 (775)
T ss_pred             CCceEEEEEecCCcchhhhhhhhcccc-----cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence             5 99999995543  33555666777     8999999986567899999999999999997632     11    122


Q ss_pred             eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          163 VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       163 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                      ..|...|++++++ ++.+++|||.|++.++|++....... ...  +|...+.++.|+| ..+.+++++.|.+ |+||.+
T Consensus       460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~-vLs--GH~RGvw~V~Fs~-~dq~laT~SgD~T-vKIW~i  534 (775)
T KOG0319|consen  460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG-VLS--GHTRGVWCVSFSK-NDQLLATCSGDKT-VKIWSI  534 (775)
T ss_pred             HhhcccccceEecCCCceEEecccccceeeecccCceEEE-Eee--CCccceEEEEecc-ccceeEeccCCce-EEEEEe
Confidence            4699999999999 78899999999999999999555332 333  4889999999998 8899999999999 999999


Q ss_pred             CCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecC
Q 040307          242 RFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSP  320 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p  320 (339)
                      .+ ..++.++.+|...|..+.|-.++ +.|++++.||.+++|++++..             +. ..-.|...|++++-+|
T Consensus       535 s~-fSClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e-------------C~~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  535 ST-FSCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE-------------CEMTLDAHNDRVWALSVSP  599 (775)
T ss_pred             cc-ceeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh-------------hhhhhhhccceeEEEeecC
Confidence            98 77899999999999999999999 699999999999999999988             55 5557999999999999


Q ss_pred             CCCceEEEecCCeEEEEe
Q 040307          321 LELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       321 ~~~~l~~~~~d~~v~~w~  338 (339)
                      ....+++++.|+.|.+|+
T Consensus       600 ~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  600 LLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ccceeEecCCCeEEEEee
Confidence            998888999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=200.59  Aligned_cols=299  Identities=17%  Similarity=0.220  Sum_probs=233.3

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC------ccccee----eEeecCCCCceEEEEc
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS------DFSADN----RLIFDHPYTPTNIAFF   80 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~------~~~~~~----~~~~~~~~~v~~l~~~   80 (339)
                      +..++....|.+++|+|.   |.+.|+|+    ...+++|..+..-..      .....+    .....|.+.|+|.+|+
T Consensus        26 i~~l~dsqairav~fhp~---g~lyavgs----nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   26 INILEDSQAIRAVAFHPA---GGLYAVGS----NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             EEEecchhheeeEEecCC---CceEEecc----CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence            444555679999999999   99999999    689999976542110      011100    1234688999999999


Q ss_pred             CCCCCCCCCeEEEeCC--cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcC--C-CCCEEEEEeC-CCeEEEE
Q 040307           81 PSEETLNPDIVATSGD--SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAG--F-DTRRVATCSV-DTTCVIW  151 (339)
Q Consensus        81 ~~~~~~~~~~la~~~~--~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~l~~~~~-d~~v~i~  151 (339)
                      |.+     .++|+|++  +|++..++...   ......+.-|.     +.|..++|-.  . .+.+|++++. |..|++-
T Consensus        99 ~~g-----eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-----gtirdl~fld~~~s~~~il~s~gagdc~iy~t  168 (350)
T KOG0641|consen   99 PCG-----ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-----GTIRDLAFLDDPESGGAILASAGAGDCKIYIT  168 (350)
T ss_pred             Ccc-----CeEEecCCCceEEEEecccccccccCcceeeeecC-----CceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence            999     89999995  88887766543   11223445555     8999999963  1 2346666553 6778888


Q ss_pred             ECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC----CCCCCeEEEEEecCCCCeE
Q 040307          152 DIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP----VQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l  226 (339)
                      |..+++....+.+|.+.|.++ ++ ++-.|++|+.|.+|++||+|-+.....+....    .....|.+++..| .|++|
T Consensus       169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll  246 (350)
T KOG0641|consen  169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLL  246 (350)
T ss_pred             ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-Cccee
Confidence            989999999999999998776 44 69999999999999999999887655443221    1235789999999 99999


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC  306 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  306 (339)
                      ++|..|.. ..+||++. +.+++.+..|...|+++.|+|.. .++++++.|..|++=|++..-.        ..++....
T Consensus       247 ~sg~~dss-c~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla--------~el~~~vv  315 (350)
T KOG0641|consen  247 ASGHADSS-CMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLA--------HELPIMVV  315 (350)
T ss_pred             eeccCCCc-eEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchh--------hcCceEEE
Confidence            99999999 99999997 78899999999999999999998 7999999999999999987540        01123345


Q ss_pred             ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          307 YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       307 ~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      -.|...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus       316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            578999999999999877899999999999963

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-34  Score=224.49  Aligned_cols=237  Identities=17%  Similarity=0.240  Sum_probs=212.1

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|.|+++.|.+     .+|++|+ | +++|||+.+++  +..++.+|.     ..|..+++++ ...++++++.|
T Consensus       148 ~gHlgWVr~vavdP~n-----~wf~tgs~DrtikIwDlatg~--LkltltGhi-----~~vr~vavS~-rHpYlFs~ged  214 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGN-----EWFATGSADRTIKIWDLATGQ--LKLTLTGHI-----ETVRGVAVSK-RHPYLFSAGED  214 (460)
T ss_pred             hhccceEEEEeeCCCc-----eeEEecCCCceeEEEEcccCe--EEEeecchh-----heeeeeeecc-cCceEEEecCC
Confidence            5899999999999998     8999998 5 99999999998  888999998     8999999997 78899999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +.|+.||++..+.++.+.+|-+.|.|++.+ .-+.|++|+.|.++++||+|+...... ..  +|..+|.++.+.| ..-
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~-l~--GH~~~V~~V~~~~-~dp  290 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV-LS--GHTNPVASVMCQP-TDP  290 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-ec--CCCCcceeEEeec-CCC
Confidence            999999999999999999999999999999 478999999999999999999874433 33  4889999999998 555


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      .+++|+.|++ |++||++. ++....+..|+..|++++.+|.. ..+|+++.| .++-|++..+.            -..
T Consensus       291 qvit~S~D~t-vrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~------------f~~  354 (460)
T KOG0285|consen  291 QVITGSHDST-VRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGE------------FLQ  354 (460)
T ss_pred             ceEEecCCce-EEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccc------------hhh
Confidence            6789999999 99999998 67788999999999999999998 588888876 78999998877            233


Q ss_pred             eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .+.+|.+-|++++-..|+ .+++++.+|.+.+|+
T Consensus       355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD  387 (460)
T ss_pred             ccccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence            566899999999999988 688999999999997

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=3.8e-34  Score=229.49  Aligned_cols=261  Identities=18%  Similarity=0.349  Sum_probs=220.7

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc------cceeeEeecCCCCceEEEEcC
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF------SADNRLIFDHPYTPTNIAFFP   81 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~------~~~~~~~~~~~~~v~~l~~~~   81 (339)
                      -+....+.|++.|..+.+.|.  +..++|+++    ..+.|.||++.......      .....+ .+|.+.-++|+|++
T Consensus       115 v~i~~~i~h~gEVnRaRymPQ--np~iVAt~t----~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~  187 (422)
T KOG0264|consen  115 VEISQKINHDGEVNRARYMPQ--NPNIVATKT----SSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNR  187 (422)
T ss_pred             eEEEEeccCCccchhhhhCCC--CCcEEEecC----CCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccc
Confidence            345566779999999999998  477888888    79999999987544332      222234 68988889999999


Q ss_pred             CCCCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307           82 SEETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID  154 (339)
Q Consensus        82 ~~~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~  154 (339)
                      ...    -.|++++ + +|++||+....     ..+...+.+|.     ..|..++|+|.+..+|++++.|+.+.|||++
T Consensus       188 ~~~----g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  188 QQE----GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             ccc----eeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----cceehhhccccchhhheeecCCCeEEEEEcC
Confidence            885    5667766 4 99999997643     34566778888     9999999999999999999999999999999


Q ss_pred             --CCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          155 --REILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       155 --~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                        +.++.....+|.+.|+|++|+  ++.+||+|+.|++|++||+|+...+...+..  |+..|.++.|+|....+||+++
T Consensus       259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg  336 (422)
T KOG0264|consen  259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSG  336 (422)
T ss_pred             CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecc
Confidence              556667778999999999999  6889999999999999999999876666665  8899999999999999999999


Q ss_pred             eCCCeEEEEecCCCC-------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          231 MDSNKVVVLDIRFPT-------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       231 ~d~~~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      .|+. +.+||+..-+             +++....+|...|..+.|+|..+..|++.++|+.+.||++..
T Consensus       337 ~D~r-l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  337 TDRR-LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cCCc-EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999 9999997543             234677789999999999999998999999999999999874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.8e-35  Score=228.89  Aligned_cols=276  Identities=18%  Similarity=0.220  Sum_probs=233.6

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|.++|.|++=+|.  .-..+|+|+    .||.|+||++.........     ..|.+.|..|++.. +     .++.+
T Consensus        63 ~gHrdGV~~lakhp~--~ls~~aSGs----~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~-~-----~~~tv  125 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPN--KLSTVASGS----CDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ-T-----SFFTV  125 (433)
T ss_pred             cccccccchhhcCcc--hhhhhhccc----cCceEEEEehhhhhhhhee-----ecccCceeeEEecc-c-----ceEEe
Confidence            457899999999999  237899999    7999999887654433332     68999999999987 4     57777


Q ss_pred             eCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           94 SGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        94 ~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      |.| +|+.|.++..   +..++.+.      ..+..+.-+. .++.++++++  .|.|||.+...++..+.-..+.|.++
T Consensus       126 gdDKtvK~wk~~~~---p~~tilg~------s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv  193 (433)
T KOG0268|consen  126 GDDKTVKQWKIDGP---PLHTILGK------SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV  193 (433)
T ss_pred             cCCcceeeeeccCC---cceeeecc------cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEE
Confidence            777 9999999875   66666654      4677887775 7788999885  68999999888999998777889999


Q ss_pred             Eec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          173 SWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       173 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      .|+  ..++|++|+.|+.|.+||+|+......+...    ..-+.++|+| ++..+.++++|.+ ++.||++....|+..
T Consensus       194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----mRTN~IswnP-eafnF~~a~ED~n-lY~~DmR~l~~p~~v  267 (433)
T KOG0268|consen  194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----MRTNTICWNP-EAFNFVAANEDHN-LYTYDMRNLSRPLNV  267 (433)
T ss_pred             ecCCCcchheeeeccCCceEEEecccCCccceeeee----ccccceecCc-cccceeecccccc-ceehhhhhhcccchh
Confidence            999  4788999999999999999999876665543    4667899999 9999999999999 999999999999999


Q ss_pred             EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEE
Q 040307          251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAI  328 (339)
Q Consensus       251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~  328 (339)
                      ..+|...|.++.|||.| +-+++||.|.+|+||......             ...++  .-...|.++.||.|.+++++|
T Consensus       268 ~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~-------------SRdiYhtkRMq~V~~Vk~S~Dskyi~SG  333 (433)
T KOG0268|consen  268 HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGH-------------SRDIYHTKRMQHVFCVKYSMDSKYIISG  333 (433)
T ss_pred             hcccceeEEEeccCCCc-chhccccccceEEEeecCCCc-------------chhhhhHhhhheeeEEEEeccccEEEec
Confidence            99999999999999999 699999999999999999877             22222  234579999999999999999


Q ss_pred             ecCCeEEEEe
Q 040307          329 AFVNKLQLLK  338 (339)
Q Consensus       329 ~~d~~v~~w~  338 (339)
                      +.|+.||+|+
T Consensus       334 Sdd~nvRlWk  343 (433)
T KOG0268|consen  334 SDDGNVRLWK  343 (433)
T ss_pred             CCCcceeeee
Confidence            9999999997

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.6e-33  Score=247.97  Aligned_cols=291  Identities=19%  Similarity=0.307  Sum_probs=233.6

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC------c-ccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS------D-FSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~------~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      ...|++++.+|+   +..+|+|+  ...|+.++||+.+.-..      + ..........|.+.|+|+.|+|||     +
T Consensus        13 ~~~IfSIdv~pd---g~~~aTgG--q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-----~   82 (942)
T KOG0973|consen   13 EKSIFSIDVHPD---GVKFATGG--QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-----S   82 (942)
T ss_pred             CeeEEEEEecCC---ceeEecCC--ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-----C
Confidence            456999999999   99999998  34488888987653210      1 111001125799999999999999     9


Q ss_pred             eEEEeCC--cEEEEeecC----------C------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           90 IVATSGD--SLRLWEIHD----------D------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        90 ~la~~~~--~i~iw~~~~----------~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      +||+|+|  .|.||....          +      .++....+.+|.     ..|..++|+| ++.+|++++.|++|.||
T Consensus        83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv~Wsp-~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDVNWSP-DDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-----CccceeccCC-CccEEEEecccceEEEE
Confidence            9999997  899999873          0      156778888888     9999999999 99999999999999999


Q ss_pred             ECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEE
Q 040307          152 DIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      +..+.+.+..+.+|.+.|..+.|.| |++|++-+.|++|++|++.+......+-+.   ......+..+.|+| +|++|+
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~la  235 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLA  235 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeec
Confidence            9999999999999999999999995 999999999999999998775544333222   12335678999999 999998


Q ss_pred             EEeeCCC---eEEEEecCCCCCceEEEecCCCCeeEEEeccC----CCC------------eEEEEeCCCcEEEEEecCC
Q 040307          228 TVGMDSN---KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL----YGR------------RLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       228 ~~~~d~~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~------------~l~~~~~dg~v~iwd~~~~  288 (339)
                      +...-++   .+.|.+-.. .+.-..+.+|.+++..++|+|.    ..+            .+|+|+.|++|.||.....
T Consensus       236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~  314 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP  314 (942)
T ss_pred             chhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence            8643221   488887644 5566789999999999999983    111            6889999999999999776


Q ss_pred             CCCCCCCCCCCcccceeeec--ccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          289 GYRSGNGGPSGDVEPELCYQ--SMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .             |+....  ....|.+++|+|||-.|++++.||+|.+++
T Consensus       315 R-------------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  315 R-------------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             C-------------chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence            6             554332  367899999999999999999999999876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.1e-35  Score=224.48  Aligned_cols=288  Identities=15%  Similarity=0.191  Sum_probs=243.7

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc----cceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF----SADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      .|....-+-|..||||   +++|++|+    .||-|.+|++.......    .....+ .-+..+|.|+.|+.|.     
T Consensus       209 KFg~KSh~EcA~FSPD---gqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~f-MMmd~aVlci~FSRDs-----  275 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPD---GQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNF-MMMDDAVLCISFSRDS-----  275 (508)
T ss_pred             ecccccchhheeeCCC---CceEeecc----ccceeeeehhccchhhhhhhhhhhcce-eecccceEEEeecccH-----
Confidence            4555677889999999   99999999    89999998876543221    111122 3578999999999999     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                      .+||+|+ | .|++|.+.++.  +++.|. .|+     ..|+++.|+. |+..+++++.|.++++.-+.+|++++.+++|
T Consensus       276 EMlAsGsqDGkIKvWri~tG~--ClRrFdrAHt-----kGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH  347 (508)
T KOG0275|consen  276 EMLASGSQDGKIKVWRIETGQ--CLRRFDRAHT-----KGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGH  347 (508)
T ss_pred             HHhhccCcCCcEEEEEEecch--HHHHhhhhhc-----cCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCc
Confidence            8999998 5 99999999998  888776 676     8999999996 9999999999999999999999999999999


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ++.|+...|. +|+.+++++.||+|++|+..+.++...+... ..+.+|.++..-|.+...++++...++ ++|.++.  
T Consensus       348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~q--  423 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNMQ--  423 (508)
T ss_pred             cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCe-EEEEecc--
Confidence            9999999999 8999999999999999999999876664443 456789999999988999999999988 9999886  


Q ss_pred             CCceEEEecC---CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          245 TNPVVVLSKH---EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       245 ~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      ++.+.++...   .+...+...+|.|+ ++.+.++|+.++.|.+..++            -.....-|...|..++-+|.
T Consensus       424 GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~------------LE~tl~VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  424 GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGK------------LERTLPVHEKDVIGLTHHPH  490 (508)
T ss_pred             ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCc------------eeeeeecccccccccccCcc
Confidence            5666666542   34677888999995 99999999999999999988            12234457778889999999


Q ss_pred             CCceEEEecCCeEEEEe
Q 040307          322 ELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       322 ~~~l~~~~~d~~v~~w~  338 (339)
                      ...+++.+.||.+++|+
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            88777889999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2e-33  Score=215.36  Aligned_cols=296  Identities=12%  Similarity=0.168  Sum_probs=234.7

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCC-----------CCCccc--ceeeEeecCCCCc
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNP-----------ETSDFS--ADNRLIFDHPYTP   74 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~-----------~~~~~~--~~~~~~~~~~~~v   74 (339)
                      .+...-..|+.++.+.+||||   |.++|+|+    .|-.|+|.+...           .+....  ......+.|.++|
T Consensus       103 yEt~ylt~HK~~cR~aafs~D---G~lvATGs----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev  175 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPD---GSLVATGS----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV  175 (430)
T ss_pred             cceEEEeecccceeeeeeCCC---CcEEEccC----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc
Confidence            445555668999999999999   99999999    799999976551           011111  1112236899999


Q ss_pred             eEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           75 TNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        75 ~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      +++.|+|..     .+|++|+ | +|+++|+.....+ ..+.+...      .+|.++.|+| .|.+|+.|.....+++|
T Consensus       176 n~l~FHPre-----~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~------~~vrsiSfHP-sGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  176 NDLDFHPRE-----TILISGSRDNTVKLFDFSKTSAKRAFKVFQDT------EPVRSISFHP-SGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             cceeecchh-----heEEeccCCCeEEEEecccHHHHHHHHHhhcc------ceeeeEeecC-CCceEEEecCCCceeEE
Confidence            999999999     8999999 4 9999999875411 22233322      6899999999 99999999999999999


Q ss_pred             ECCCCeeeeee---eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          152 DIDREILETQL---VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       152 d~~~~~~~~~~---~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      |+++-++...-   ..|.+.|+++.++ .+++.++++.||.|++||--++++...+... +....|.+..|.. ++++++
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-H~gsevcSa~Ftk-n~kyiL  321 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-HGGSEVCSAVFTK-NGKYIL  321 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh-cCCceeeeEEEcc-CCeEEe
Confidence            99998865543   4688999999999 7999999999999999999999877766555 3456799999996 999999


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecCC-----CCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKHE-----GSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      +.+.|.. +++|.+.+ +.++....+-.     .--+...|+...+ +++.-. ..+.+.-||.++..           .
T Consensus       322 sSG~DS~-vkLWEi~t-~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-yVl~pDEas~slcsWdaRtad-----------r  387 (430)
T KOG0640|consen  322 SSGKDST-VKLWEIST-GRMLKEYTGAGTTGRQKHRTQAVFNHTED-YVLFPDEASNSLCSWDARTAD-----------R  387 (430)
T ss_pred             ecCCcce-eeeeeecC-CceEEEEecCCcccchhhhhhhhhcCccc-eEEccccccCceeeccccchh-----------h
Confidence            9999999 99999988 66676665431     1223456777775 555444 45789999999977           1


Q ss_pred             cceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ..+...+|.+.+..+.-||.++.+++++.|-..|+|.
T Consensus       388 ~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  388 VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            2346678999999999999999999999999999994

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2e-32  Score=204.87  Aligned_cols=272  Identities=19%  Similarity=0.265  Sum_probs=225.5

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|...+.+++|+-+   |..||+|+    .|+++.+|+++........  .. .+|.+.|-.++|+|...    ++++++
T Consensus        18 ~~~~~v~Sv~wn~~---g~~lasgs----~dktv~v~n~e~~r~~~~~--~~-~gh~~svdql~w~~~~~----d~~ata   83 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCD---GTKLASGS----FDKTVSVWNLERDRFRKEL--VY-RGHTDSVDQLCWDPKHP----DLFATA   83 (313)
T ss_pred             hhhhcceEEEEccc---Cceeeecc----cCCceEEEEecchhhhhhh--cc-cCCCcchhhheeCCCCC----cceEEe
Confidence            35689999999999   99999999    6999999888766322222  33 68999999999999874    777777


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | +|++||+..++  +........     ..| -+.|+| ++++++.++.|..|...|.++.+.+...+ ....+..+
T Consensus        84 s~dk~ir~wd~r~~k--~~~~i~~~~-----eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~  153 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGK--CTARIETKG-----ENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI  153 (313)
T ss_pred             cCCceEEEEEeccCc--EEEEeeccC-----cce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence            6 5 99999999988  666555433     344 578998 99999999999999999999888766654 45578889


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      .|+ ++++|+....-|.|.|......+....+   ..|.....++.|+| +|+++|+|+.|.. +.+||+.. --+++.+
T Consensus       154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p-~GryfA~GsADAl-vSLWD~~E-LiC~R~i  227 (313)
T KOG1407|consen  154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDP-DGRYFATGSADAL-VSLWDVDE-LICERCI  227 (313)
T ss_pred             eecCCCCEEEEecCCceEEEEecccccccccc---ccCCcceEEEEECC-CCceEeeccccce-eeccChhH-hhhheee
Confidence            999 7888888888899999988876644443   33678899999999 9999999999998 99999986 5567888


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      ..+.-+|+.+.||-+| ++||++++|..|-|=+++++.             .+....+.++...|+|+|....|+-++.
T Consensus       228 sRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd-------------~~~eI~~~~~t~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  228 SRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD-------------RVWEIPCEGPTFTVAWHPKRPLLAYACD  292 (313)
T ss_pred             ccccCceEEEEeccCc-ceeeccCccceEEeEecccCC-------------eEEEeeccCCceeEEecCCCceeeEEec
Confidence            8899999999999999 699999999999999999988             5667788999999999999886664553

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-33  Score=233.06  Aligned_cols=270  Identities=17%  Similarity=0.271  Sum_probs=220.9

Q ss_pred             EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEE
Q 040307           23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRL  100 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~i  100 (339)
                      ++|+.    .+.||+|.     ...|++|+  ...+....  ...++ ...|+++.|+++|     .+||+|..  .|.|
T Consensus       183 ldWss----~n~laVal-----g~~vylW~--~~s~~v~~--l~~~~-~~~vtSv~ws~~G-----~~LavG~~~g~v~i  243 (484)
T KOG0305|consen  183 LDWSS----ANVLAVAL-----GQSVYLWS--ASSGSVTE--LCSFG-EELVTSVKWSPDG-----SHLAVGTSDGTVQI  243 (484)
T ss_pred             hhccc----CCeEEEEe-----cceEEEEe--cCCCceEE--eEecC-CCceEEEEECCCC-----CEEEEeecCCeEEE
Confidence            46773    56888888     68999955  44444333  22223 8899999999999     89999973  9999


Q ss_pred             EeecCCcceeEEEeec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-eeccCCceeEEEec-CC
Q 040307          101 WEIHDDRTELKSLLNS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ-LVAHDREVYDISWG-GF  177 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~-~~  177 (339)
                      ||..+.+  ....+.+ |.     ..|.+++|+   ...+.+|+.++.|..+|++..+.... +.+|...|..++|+ ++
T Consensus       244 wD~~~~k--~~~~~~~~h~-----~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~  313 (484)
T KOG0305|consen  244 WDVKEQK--KTRTLRGSHA-----SRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG  313 (484)
T ss_pred             Eehhhcc--ccccccCCcC-----ceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC
Confidence            9999887  6777777 76     899999996   58899999999999999998875554 88999999999999 89


Q ss_pred             cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEEecCC
Q 040307          178 NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVLSKHE  255 (339)
Q Consensus       178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~~~~~  255 (339)
                      .++|+|+.|+.+.|||......... +..  |...|..++|+|....+||+|+  .|+. |++||... +..+..+.. .
T Consensus       314 ~~lASGgnDN~~~Iwd~~~~~p~~~-~~~--H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~-g~~i~~vdt-g  387 (484)
T KOG0305|consen  314 NQLASGGNDNVVFIWDGLSPEPKFT-FTE--HTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNT-GARIDSVDT-G  387 (484)
T ss_pred             CeeccCCCccceEeccCCCccccEE-Eec--cceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCC-CcEeccccc-C
Confidence            9999999999999999966654333 333  7899999999999999999964  5666 99999987 555665554 6


Q ss_pred             CCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeE
Q 040307          256 GSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKL  334 (339)
Q Consensus       256 ~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v  334 (339)
                      ..|.++.|++....++.+-+ .++.|.||++...+            ......+|...|..++|+|||..+++++.|.++
T Consensus       388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~------------~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK------------LVAELLGHTSRVLYLALSPDGETIVTGAADETL  455 (484)
T ss_pred             CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc------------eeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence            78999999999843444433 67799999999977            344667899999999999999999999999999


Q ss_pred             EEEeC
Q 040307          335 QLLKV  339 (339)
Q Consensus       335 ~~w~v  339 (339)
                      ++|++
T Consensus       456 rfw~~  460 (484)
T KOG0305|consen  456 RFWNL  460 (484)
T ss_pred             Eeccc
Confidence            99985

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=229.37  Aligned_cols=281  Identities=21%  Similarity=0.302  Sum_probs=229.0

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.+.+..+.|-++   ...|++|+    .|..|++|+...++.+...  .+ .+..+.|+.+.|.+++.    .+||++
T Consensus       173 ~h~gev~~v~~l~~---sdtlatgg----~Dr~Ik~W~v~~~k~~~~~--tL-aGs~g~it~~d~d~~~~----~~iAas  238 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRN---SDTLATGG----SDRIIKLWNVLGEKSELIS--TL-AGSLGNITSIDFDSDNK----HVIAAS  238 (459)
T ss_pred             ccccccceeEEccC---cchhhhcc----hhhhhhhhhcccchhhhhh--hh-hccCCCcceeeecCCCc----eEEeec
Confidence            46789999999999   89999999    7999999877766644443  44 56778899999999994    555556


Q ss_pred             CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           95 GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        95 ~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      .| .+++|+++..+  ...++.+|+     ..|+++.|.. ....+++|+.|.+|++||+....+.+++. ....+.+|.
T Consensus       239 ~d~~~r~Wnvd~~r--~~~TLsGHt-----dkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~  309 (459)
T KOG0288|consen  239 NDKNLRLWNVDSLR--LRHTLSGHT-----DKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIV  309 (459)
T ss_pred             CCCceeeeeccchh--hhhhhcccc-----cceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceE
Confidence            67 99999999987  888999999     9999999985 55569999999999999999988887764 344566666


Q ss_pred             ecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307          174 WGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK  253 (339)
Q Consensus       174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~  253 (339)
                      .+ ...+++|..|++|++||.++......+...    +.|+++..++ ++..+++++.|.. +.+.|++. ......+.+
T Consensus       310 ~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~-~g~~lLsssRDdt-l~viDlRt-~eI~~~~sA  381 (459)
T KOG0288|consen  310 CS-ISDVISGHFDKKVRFWDIRSADKTRSVPLG----GRVTSLDLSM-DGLELLSSSRDDT-LKVIDLRT-KEIRQTFSA  381 (459)
T ss_pred             ec-ceeeeecccccceEEEeccCCceeeEeecC----cceeeEeecc-CCeEEeeecCCCc-eeeeeccc-ccEEEEeec
Confidence            65 678899999999999999998855554433    5999999998 8888888899999 99999997 444444433


Q ss_pred             C----CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEEEEecCCCCceEEE
Q 040307          254 H----EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINVVRWSPLELDWIAI  328 (339)
Q Consensus       254 ~----~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~  328 (339)
                      .    ....+.+.|||++ .++++||.||.|+||++.+++           ++......+ ...|++++|+|.|.+++++
T Consensus       382 ~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgK-----------lE~~l~~s~s~~aI~s~~W~~sG~~Llsa  449 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGK-----------LEKVLSLSTSNAAITSLSWNPSGSGLLSA  449 (459)
T ss_pred             cccccccccceeEECCCC-ceeeeccCCCcEEEEEccCce-----------EEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence            2    2248899999999 599999999999999999988           222222223 3379999999999999999


Q ss_pred             ecCCeEEEEe
Q 040307          329 AFVNKLQLLK  338 (339)
Q Consensus       329 ~~d~~v~~w~  338 (339)
                      +.++.+.+|.
T Consensus       450 dk~~~v~lW~  459 (459)
T KOG0288|consen  450 DKQKAVTLWT  459 (459)
T ss_pred             cCCcceEecC
Confidence            9999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-33  Score=233.74  Aligned_cols=241  Identities=15%  Similarity=0.228  Sum_probs=217.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEe-CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATS-GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..+..+|.++.|+|..     ..++++ -. .|.||+.++..  .+..+.-..     .||++..|-+ ..+.+++|+.|
T Consensus        10 ~~rSdRVKsVd~HPte-----Pw~la~LynG~V~IWnyetqt--mVksfeV~~-----~PvRa~kfia-RknWiv~GsDD   76 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTE-----PWILAALYNGDVQIWNYETQT--MVKSFEVSE-----VPVRAAKFIA-RKNWIVTGSDD   76 (794)
T ss_pred             hccCCceeeeecCCCC-----ceEEEeeecCeeEEEecccce--eeeeeeecc-----cchhhheeee-ccceEEEecCC
Confidence            4588999999999998     555554 34 99999999987  777887766     8999999997 88999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      ..|+||+.++++.+..+.+|.+.|++++.+| .-++++++.|-.|++||-...-...+.+++  |...|.+++|+|.+.+
T Consensus        77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG--H~HyVMqv~fnPkD~n  154 (794)
T KOG0276|consen   77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG--HEHYVMQVAFNPKDPN  154 (794)
T ss_pred             ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC--cceEEEEEEecCCCcc
Confidence            9999999999999999999999999999994 679999999999999999988777888887  7889999999999999


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCC-CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG-RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP  303 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  303 (339)
                      .+|+++.|++ |++|.+.+ ..|..++.+|...|+++.+-+.|+ -+|++|+.|..++|||.++..             +
T Consensus       155 tFaS~sLDrT-VKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-------------C  219 (794)
T KOG0276|consen  155 TFASASLDRT-VKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-------------C  219 (794)
T ss_pred             ceeeeecccc-EEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-------------H
Confidence            9999999999 99999987 668899999999999999998652 299999999999999999987             4


Q ss_pred             e-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          304 E-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       304 ~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      + ...+|...|..+.|+|.-+.+++++.||++|||+
T Consensus       220 V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  220 VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             HHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence            4 5668999999999999999899999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2e-32  Score=254.59  Aligned_cols=246  Identities=19%  Similarity=0.261  Sum_probs=202.5

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRV  139 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  139 (339)
                      ..|...|.+++|+|++     ++||+|+ | .|+||++....      ..+...+.++      ..+.+++|+|..+.+|
T Consensus       480 ~~~~~~V~~i~fs~dg-----~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        480 LNSSNLVCAIGFDRDG-----EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR------SKLSGICWNSYIKSQV  548 (793)
T ss_pred             cCCCCcEEEEEECCCC-----CEEEEEeCCCEEEEEECCcccccccccccceEEeccc------CceeeEEeccCCCCEE
Confidence            4589999999999999     8999988 4 99999976421      0122223322      5789999998678899


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307          140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE  217 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  217 (339)
                      ++++.||.|++||+.+++.+..+.+|...|++++|+  ++.+|++|+.|+.|++||+++......+. .   ...+.++.
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~---~~~v~~v~  624 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-T---KANICCVQ  624 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c---CCCeEEEE
Confidence            999999999999999999899999999999999998  47899999999999999999877544432 2   25789999


Q ss_pred             EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307          218 WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  297 (339)
                      |++.++.+|++|+.|+. |++||++....++..+.+|...|.++.|. ++ ..|++++.|+.|+|||+...... .    
T Consensus       625 ~~~~~g~~latgs~dg~-I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~-~----  696 (793)
T PLN00181        625 FPSESGRSLAFGSADHK-VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG-I----  696 (793)
T ss_pred             EeCCCCCEEEEEeCCCe-EEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc-c----
Confidence            97768999999999999 99999987555778888999999999997 55 58999999999999999754200 0    


Q ss_pred             CCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          298 SGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       298 ~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                        ...++ ...+|...+..++|+|++.++++++.|+.|++|+
T Consensus       697 --~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        697 --NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             --CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence              01123 4557888999999999999889999999999997

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.5e-33  Score=216.71  Aligned_cols=260  Identities=19%  Similarity=0.310  Sum_probs=217.5

Q ss_pred             CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++....+. |.++|.+++|.-..+....|++++    .|.++++|.|+............ .+|...|.+++..+++  
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas----~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~V~sVsv~~sg--  205 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS----MDQTLRLWKWNVGENKVKALKVC-RGHKRSVDSVSVDSSG--  205 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEec----CCceEEEEEecCchhhhhHHhHh-cccccceeEEEecCCC--
Confidence            455555554 789999898876633244699999    79999999999877655542222 4999999999999999  


Q ss_pred             CCCCeEEEeC-C-cEEEEeecCC-----------------------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307           86 LNPDIVATSG-D-SLRLWEIHDD-----------------------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA  140 (339)
Q Consensus        86 ~~~~~la~~~-~-~i~iw~~~~~-----------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  140 (339)
                         ..+++|+ | .|.||+....                       ...++.++.+|+     .+|.++.|++  ...++
T Consensus       206 ---tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-----~~Vs~V~w~d--~~v~y  275 (423)
T KOG0313|consen  206 ---TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-----EPVSSVVWSD--ATVIY  275 (423)
T ss_pred             ---CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc-----cceeeEEEcC--CCceE
Confidence               8899988 7 9999993321                       124667778888     9999999984  78899


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      +++.|.+|+.||+.++..+..+.. ...++|+.++ ..++|++|+.|..|++||.|.+.-.........|+..|.++.|+
T Consensus       276 S~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws  354 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS  354 (423)
T ss_pred             eecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence            999999999999999998888864 5678999999 68899999999999999999987544444445588999999999


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      |.+...|++++.|+. +++||+|....|+..+.+|...|.++.|+..+  .+++|+.|.+|+|+....
T Consensus       355 p~~~~~~~S~S~D~t-~klWDvRS~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  355 PTNEFQLVSGSYDNT-VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             CCCceEEEEEecCCe-EEEEEeccCCCcceeeccCCceEEEEeccCCc--eEEeccCcceEEEecccc
Confidence            988899999999999 99999999777999999999999999999764  899999999999997654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.6e-34  Score=221.13  Aligned_cols=241  Identities=20%  Similarity=0.259  Sum_probs=214.8

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|..+|+.+-|+|+-     .+++++++  +|++||..+++  +...+++|.     ..+.++.|+. .|+++++++.|
T Consensus       105 ~g~r~~vt~v~~hp~~-----~~v~~as~d~tikv~D~~tg~--~e~~LrGHt-----~sv~di~~~a-~Gk~l~tcSsD  171 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSE-----ALVVSASEDATIKVFDTETGE--LERSLRGHT-----DSVFDISFDA-SGKYLATCSSD  171 (406)
T ss_pred             hccccceeeeeeccCc-----eEEEEecCCceEEEEEccchh--hhhhhhccc-----cceeEEEEec-CccEEEecCCc
Confidence            5788999999999998     78888874  99999999998  688999999     8899999996 89999999999


Q ss_pred             CeEEEEECCC-CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          146 TTCVIWDIDR-EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       146 ~~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      -.+++||..+ .++++.+.+|...|.++.|- -++++++++.|.+|+.||+.++-....+.   .|...+..++.+. +|
T Consensus       172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~-DG  247 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQ-DG  247 (406)
T ss_pred             cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc---CchHhEEEEEecC-Ce
Confidence            9999999976 55777888999999999999 58999999999999999999998555433   3667999999995 99


Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC--------------CCeEEEEeCCCcEEEEEecCCC
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY--------------GRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~--------------~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .++|+++.|.+ +++|-+.+ .++...+..|+.+|-+++|.|..              ..++++++.|++|++||+.++.
T Consensus       248 ti~As~s~dqt-l~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~  325 (406)
T KOG0295|consen  248 TIIASCSNDQT-LRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM  325 (406)
T ss_pred             eEEEecCCCce-EEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence            99999999999 99999887 66778899999999999998752              1489999999999999999988


Q ss_pred             CCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                                  -.+.+.+|...|..++|+|.|+||+++.+|++|++|++
T Consensus       326 ------------cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  326 ------------CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             ------------EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence                        33467799999999999999999999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=237.35  Aligned_cols=242  Identities=19%  Similarity=0.244  Sum_probs=202.2

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      .+...|.++.|++++     +.+++++ + .+++|+....+......+.+|.     ..|.+++|+| +++++++++.|+
T Consensus       157 ~~~~sv~~~~fs~~g-----~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~-----~~v~~~~fs~-d~~~l~s~s~D~  225 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDG-----RALAAASSDGLIRIWKLEGIKSNLLRELSGHT-----RGVSDVAFSP-DGSYLLSGSDDK  225 (456)
T ss_pred             cccCceEEEEEcCCC-----CeEEEccCCCcEEEeecccccchhhccccccc-----cceeeeEECC-CCcEEEEecCCc
Confidence            347889999999999     7788875 5 9999999555422444556676     8999999998 999999999999


Q ss_pred             eEEEEEC-CCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          147 TCVIWDI-DREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       147 ~v~i~d~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +|+|||+ ..+..++++.+|...|++++|+ .++++++|+.|++|++||+++++.... ...  |...|.+++|++ +++
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~-l~~--hs~~is~~~f~~-d~~  301 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK-LKG--HSDGISGLAFSP-DGN  301 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe-eec--cCCceEEEEECC-CCC
Confidence            9999999 5558899999999999999999 689999999999999999999664443 333  788999999998 999


Q ss_pred             eEEEEeeCCCeEEEEecCCCCC-ceEEEecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          225 FMATVGMDSNKVVVLDIRFPTN-PVVVLSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      +|++++.|+. |++||+.+... +...+..+...  ++.+.|+|++ .+++++..|+.+++||+....            
T Consensus       302 ~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~------------  367 (456)
T KOG0266|consen  302 LLVSASYDGT-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK------------  367 (456)
T ss_pred             EEEEcCCCcc-EEEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc------------
Confidence            9999999999 99999998432 35666666555  9999999999 699999999999999999877            


Q ss_pred             cceeeecccc---eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          302 EPELCYQSMA---EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       302 ~~~~~~~~~~---~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .+.....|..   .+.+...++.++++++++.|+.|.+|++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~  408 (456)
T KOG0266|consen  368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS  408 (456)
T ss_pred             ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence            2334444433   4566677889998999999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-33  Score=208.26  Aligned_cols=292  Identities=14%  Similarity=0.176  Sum_probs=227.4

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      ++.-..|+.|++-+.|+.+   |.+|.+++    .|....+|- ..++..+-   .+ .+|.+.|+|+...-+.     +
T Consensus         3 pi~l~GHERplTqiKyN~e---GDLlFsca----KD~~~~vw~-s~nGerlG---ty-~GHtGavW~~Did~~s-----~   65 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNRE---GDLLFSCA----KDSTPTVWY-SLNGERLG---TY-DGHTGAVWCCDIDWDS-----K   65 (327)
T ss_pred             ccccccCccccceEEecCC---CcEEEEec----CCCCceEEE-ecCCceee---ee-cCCCceEEEEEecCCc-----c
Confidence            3555678999999999999   99999999    899999963 22333332   33 6999999999999998     8


Q ss_pred             eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----CCeEEEEECC-------C
Q 040307           90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----DTTCVIWDID-------R  155 (339)
Q Consensus        90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~v~i~d~~-------~  155 (339)
                      .+++|+ | ++++||+++++  .+..++..      .+|..+.|++ ++++++.+..     .+.|.++|++       .
T Consensus        66 ~liTGSAD~t~kLWDv~tGk--~la~~k~~------~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s  136 (327)
T KOG0643|consen   66 HLITGSADQTAKLWDVETGK--QLATWKTN------SPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS  136 (327)
T ss_pred             eeeeccccceeEEEEcCCCc--EEEEeecC------CeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence            999988 5 99999999998  77777754      6899999997 8888887654     4689999998       3


Q ss_pred             CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307          156 EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN  234 (339)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~  234 (339)
                      .++...+..+.+.++.+-|. -++.|++|..||.|..||++++.........  |...|+.+.++| +..++++++.|.+
T Consensus       137 ~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~--h~~~Ind~q~s~-d~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  137 EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE--HSSKINDLQFSR-DRTYFITGSKDTT  213 (327)
T ss_pred             cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh--hccccccccccC-CcceEEecccCcc
Confidence            45677788888999999999 5899999999999999999998755544444  778999999998 9999999999999


Q ss_pred             eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC------cccceeeec
Q 040307          235 KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG------DVEPELCYQ  308 (339)
Q Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~  308 (339)
                       -++||+++ -..++++.. ..+|++.+++|..+.+++.|+.+. .   |+.+...+... ....      ..+.-...+
T Consensus       214 -akl~D~~t-l~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA-~---dVTTT~~r~GK-FEArFyh~i~eEEigrvkG  285 (327)
T KOG0643|consen  214 -AKLVDVRT-LEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEA-M---DVTTTSTRAGK-FEARFYHLIFEEEIGRVKG  285 (327)
T ss_pred             -ceeeeccc-eeeEEEeee-cccccceecccccceEEecCCcee-e---eeeeecccccc-hhhhHHHHHHHHHhccccc
Confidence             99999998 445666664 679999999998864444444332 1   22221100000 0000      001225568


Q ss_pred             ccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          309 SMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      |-++|++++|||+|..+.+++.||.||+..
T Consensus       286 HFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  286 HFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             cccCcceeEECCCCcccccCCCCceEEEEE
Confidence            999999999999999888999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-34  Score=224.58  Aligned_cols=229  Identities=13%  Similarity=0.257  Sum_probs=199.1

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      ....|+|+.+..       ..+++|. | +|+|||.++-.  +...+.+|+     +.|.|+.|.   .+.|++|+.|.+
T Consensus       196 ~skgVYClQYDD-------~kiVSGlrDnTikiWD~n~~~--c~~~L~GHt-----GSVLCLqyd---~rviisGSSDsT  258 (499)
T KOG0281|consen  196 NSKGVYCLQYDD-------EKIVSGLRDNTIKIWDKNSLE--CLKILTGHT-----GSVLCLQYD---ERVIVSGSSDST  258 (499)
T ss_pred             cCCceEEEEecc-------hhhhcccccCceEEeccccHH--HHHhhhcCC-----CcEEeeecc---ceEEEecCCCce
Confidence            456799999854       4677887 5 99999998876  888999999     999999985   479999999999


Q ss_pred             EEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          148 CVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      |++||.++++++.++-.|...|..+.|+ ..++++++.|.++.+||+..+..........+|...|..+.|+   .++++
T Consensus       259 vrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIV  334 (499)
T KOG0281|consen  259 VRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIV  334 (499)
T ss_pred             EEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEE
Confidence            9999999999999999999999999998 6799999999999999999887443322223478899999995   46999


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-ee
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LC  306 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~  306 (339)
                      +++.|.+ |++|++.+ ...+.++.+|...|.++.+.  + +++++|+.|.+|++||+..+.             .+ ..
T Consensus       335 sASgDRT-ikvW~~st-~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~-------------cLRvL  396 (499)
T KOG0281|consen  335 SASGDRT-IKVWSTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA-------------CLRVL  396 (499)
T ss_pred             EecCCce-EEEEeccc-eeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH-------------HHHHH
Confidence            9999999 99999988 77899999999999888864  4 699999999999999999988             44 66


Q ss_pred             ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          307 YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       307 ~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .+|..-|.++.|..  +.+++++.||+|++|++
T Consensus       397 eGHEeLvRciRFd~--krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  397 EGHEELVRCIRFDN--KRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             hchHHhhhheeecC--ceeeeccccceEEEEec
Confidence            78999999999954  46999999999999985

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.4e-31  Score=228.02  Aligned_cols=226  Identities=15%  Similarity=0.239  Sum_probs=178.3

Q ss_pred             ecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307           68 FDHPYTPTNIAFFP-SEETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRV  139 (339)
Q Consensus        68 ~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  139 (339)
                      .+|.+.|.+++|+| ++     .+|++|+ | +|++|++.+..     ..++..+.+|.     ..|.+++|+|..+++|
T Consensus        72 ~GH~~~V~~v~fsP~d~-----~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDP-----QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL  141 (493)
T ss_pred             eCCCCCEEEEEEcCCCC-----CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence            68999999999999 66     7888888 4 99999997653     13566788887     8999999998445799


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC-CeEEEE
Q 040307          140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC-PLLRLE  217 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~  217 (339)
                      ++++.|+.|+|||+++++.+..+..|...|.+++|+ ++++|++++.|+.|++||+++++....+. .  |.. ....+.
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~--H~~~~~~~~~  218 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-A--HASAKSQRCL  218 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-c--CCCCcceEEE
Confidence            999999999999999999888898999999999999 79999999999999999999987544332 2  333 345788


Q ss_pred             EecCCCCeEEEEe----eCCCeEEEEecCCCCCceEEEecCC-CCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCC
Q 040307          218 WNKADPRFMATVG----MDSNKVVVLDIRFPTNPVVVLSKHE-GSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYR  291 (339)
Q Consensus       218 ~~p~~~~~l~~~~----~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~  291 (339)
                      |.| ++..+++++    .|+. |++||++....++.....+. ..+....|++++ .+|++++ .|+.|++||+..+.  
T Consensus       219 w~~-~~~~ivt~G~s~s~Dr~-VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~--  293 (493)
T PTZ00421        219 WAK-RKDLIITLGCSKSQQRQ-IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNER--  293 (493)
T ss_pred             EcC-CCCeEEEEecCCCCCCe-EEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCc--
Confidence            988 555565544    3566 99999998666666554433 356667899998 5777776 69999999999876  


Q ss_pred             CCCCCCCCcccce--eeecccceeEEEEecCCC
Q 040307          292 SGNGGPSGDVEPE--LCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       292 ~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~  322 (339)
                                 +.  ..+.+..++..++|.|..
T Consensus       294 -----------~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        294 -----------LTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             -----------eEEEeeccCCCCCcceEecccc
Confidence                       33  233455677888888863

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-32  Score=201.43  Aligned_cols=236  Identities=15%  Similarity=0.141  Sum_probs=200.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..++++|..+.|+-+|     ++.++++ | +|++|+...+.  +++++.+|.     ..|..++.+. ++..|++|+.|
T Consensus        14 ~~~qgaV~avryN~dG-----nY~ltcGsdrtvrLWNp~rg~--liktYsghG-----~EVlD~~~s~-Dnskf~s~GgD   80 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDG-----NYCLTCGSDRTVRLWNPLRGA--LIKTYSGHG-----HEVLDAALSS-DNSKFASCGGD   80 (307)
T ss_pred             cccccceEEEEEccCC-----CEEEEcCCCceEEeecccccc--eeeeecCCC-----ceeeeccccc-cccccccCCCC
Confidence            5789999999999999     7777666 6 99999999887  999999998     8999999996 89999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      ..|.+||+++|+..+.+.+|.+.|+.++|+ +...+++|+.|.++++||.|+..... ++...  ....|.++..   .+
T Consensus        81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v---~~  155 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDV---AE  155 (307)
T ss_pred             ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEe---cc
Confidence            999999999999999999999999999999 78999999999999999999886332 22222  4568888887   45


Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP  303 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  303 (339)
                      ..|++|+.||+ ++.||+|. +......  ...+|+++.|++++ +..+.++.|+++++.|-++++             .
T Consensus       156 heIvaGS~DGt-vRtydiR~-G~l~sDy--~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk-------------l  217 (307)
T KOG0316|consen  156 HEIVAGSVDGT-VRTYDIRK-GTLSSDY--FGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK-------------L  217 (307)
T ss_pred             cEEEeeccCCc-EEEEEeec-ceeehhh--cCCcceeEEecCCC-CEEEEeeccceeeecccchhH-------------H
Confidence            88999999999 99999998 4333333  34589999999999 599999999999999999988             3


Q ss_pred             e-eeecccc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          304 E-LCYQSMA--EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       304 ~-~~~~~~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      + ...+|..  --...++......+++++.||.|.+|++
T Consensus       218 L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence            3 3345543  3455677777777889999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-33  Score=239.16  Aligned_cols=241  Identities=15%  Similarity=0.258  Sum_probs=213.1

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      .+.+|..++|+|..     ..+.++-  +.|++||.+-+.  ++..|..|.     ++|.+++|+| .+.+|++|+.|-.
T Consensus         8 kSsRvKglsFHP~r-----PwILtslHsG~IQlWDYRM~t--li~rFdeHd-----GpVRgv~FH~-~qplFVSGGDDyk   74 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKR-----PWILTSLHSGVIQLWDYRMGT--LIDRFDEHD-----GPVRGVDFHP-TQPLFVSGGDDYK   74 (1202)
T ss_pred             ccccccceecCCCC-----CEEEEeecCceeeeehhhhhh--HHhhhhccC-----CccceeeecC-CCCeEEecCCccE
Confidence            45689999999998     6777774  499999999887  888899988     9999999998 9999999999999


Q ss_pred             EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          148 CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                      |++|+..+.+++.++.+|-+.|..+.|+ .--+|+++|.|.+|+||+..+.++... ..+  |...|.|..|+| ...++
T Consensus        75 IkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav-ltG--HnHYVMcAqFhp-tEDlI  150 (1202)
T KOG0292|consen   75 IKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV-LTG--HNHYVMCAQFHP-TEDLI  150 (1202)
T ss_pred             EEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE-Eec--CceEEEeeccCC-ccceE
Confidence            9999999999999999999999999999 677999999999999999999885554 344  677999999999 88999


Q ss_pred             EEEeeCCCeEEEEecCCCC----------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307          227 ATVGMDSNKVVVLDIRFPT----------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS  278 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  278 (339)
                      ++++.|.+ |++||+....                            -....+.+|...|+-++|+|.-+ ++++|+.|.
T Consensus       151 VSaSLDQT-VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDR  228 (1202)
T KOG0292|consen  151 VSASLDQT-VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDR  228 (1202)
T ss_pred             EEecccce-EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcc
Confidence            99999999 9999985321                            01235678999999999999996 999999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .|++|.+...+          .++.-...+|...|.++-|+|....+++.+.|++||+|++
T Consensus       229 qVKlWrmnetK----------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  229 QVKLWRMNETK----------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             eeeEEEecccc----------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence            99999998877          4445577899999999999999888889999999999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-32  Score=234.85  Aligned_cols=289  Identities=12%  Similarity=0.079  Sum_probs=205.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccccee-----eEeecCCCCceEEEEcCCCCCCCCC
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN-----RLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      .|.+.|.++.||+|   |+|||+|+    +|+.|+||.+-..........     .+.......+..+.-++........
T Consensus       265 ah~gaIw~mKFS~D---GKyLAsaG----eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHD---GKYLASAG----EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             ccCCcEEEEEeCCC---CceeeecC----CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            47789999999999   99999999    899999998765221100000     0000111111111111100000001


Q ss_pred             eEEEeCC--cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           90 IVATSGD--SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        90 ~la~~~~--~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                      ..-.+..  . .+......  ..+++..+.+|.     +.|.++.|+  .+++|++++.|.+|++|++...+++..|. |
T Consensus       338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt-----~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-H  408 (712)
T KOG0283|consen  338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHT-----ADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-H  408 (712)
T ss_pred             ccccccCCcc-ccCCCccccccccchhhhhccc-----hhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-c
Confidence            1111221  2 12221111  123778888998     999999999  57899999999999999999999999995 9


Q ss_pred             CCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          166 DREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       166 ~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      .+-|+|++|+  |.++|++|+-|+.|+||++...+...- ...   ..-|++++|.| +|++.++|+.+|. +++|++..
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl---~~lITAvcy~P-dGk~avIGt~~G~-C~fY~t~~  482 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDL---RDLITAVCYSP-DGKGAVIGTFNGY-CRFYDTEG  482 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhh---hhhheeEEecc-CCceEEEEEeccE-EEEEEccC
Confidence            9999999999  799999999999999999988763222 222   36899999999 7999999999999 99999986


Q ss_pred             CCCceEEEe--cC------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec--ccce
Q 040307          244 PTNPVVVLS--KH------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ--SMAE  312 (339)
Q Consensus       244 ~~~~~~~~~--~~------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~  312 (339)
                       .+......  .|      ...|+++.|.|..+..+++.+.|..|+|||.+...             ++ ...+  ....
T Consensus       483 -lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-------------lv~KfKG~~n~~S  548 (712)
T KOG0283|consen  483 -LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-------------LVHKFKGFRNTSS  548 (712)
T ss_pred             -CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-------------hhhhhcccccCCc
Confidence             33332221  11      22799999999876678888999999999997766             22 2222  2333


Q ss_pred             eEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          313 INVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       313 i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      =....|+.||+++|+++.|..|++|++
T Consensus       549 Q~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  549 QISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             ceeeeEccCCCEEEEeecCceEEEEeC
Confidence            457889999999999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.6e-31  Score=215.87  Aligned_cols=239  Identities=20%  Similarity=0.313  Sum_probs=202.8

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|..+|.+++|+|++     ++|++++ + .+++|++.+.+  ....+..|.     ..+..+.|+| ++++|++++.+
T Consensus         6 ~~h~~~i~~~~~~~~~-----~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~~   72 (289)
T cd00200           6 KGHTGGVTCVAFSPDG-----KLLATGSGDGTIKVWDLETGE--LLRTLKGHT-----GPVRDVAASA-DGTYLASGSSD   72 (289)
T ss_pred             cccCCCEEEEEEcCCC-----CEEEEeecCcEEEEEEeeCCC--cEEEEecCC-----cceeEEEECC-CCCEEEEEcCC
Confidence            4799999999999998     7888887 5 99999999876  666677776     7889999998 88899999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |.|++||+++++....+..|...+.++.|+ ++.++++++.++.|++||+++.+....+.   .+...+.+++|+| ++.
T Consensus        73 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~  148 (289)
T cd00200          73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSP-DGT  148 (289)
T ss_pred             CeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcC-cCC
Confidence            999999999888888888898899999999 56778888779999999999766443332   3567899999998 688


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      ++++++.++. +++||++. .+++..+..|...+.++.|+|++ ..+++++.|+.|++||+....             +.
T Consensus       149 ~l~~~~~~~~-i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~-------------~~  212 (289)
T cd00200         149 FVASSSQDGT-IKLWDLRT-GKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK-------------CL  212 (289)
T ss_pred             EEEEEcCCCc-EEEEEccc-cccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc-------------ee
Confidence            8888887888 99999986 56678888888899999999998 588888889999999998866             34


Q ss_pred             eee-cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 LCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 ~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ... .|...|.+++|+|++..+++++.|+.+++|++
T Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL  248 (289)
T ss_pred             cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence            333 67889999999999765556666999999985

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-32  Score=223.42  Aligned_cols=290  Identities=16%  Similarity=0.184  Sum_probs=245.5

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +.+.++.|..-|.++.+|..   .+++.+|+     .|.|+||++.....+......-.......|.++..+||+     
T Consensus       411 rq~~tL~HGEvVcAvtIS~~---trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-----  477 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNP---TRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----  477 (705)
T ss_pred             HhhhhhccCcEEEEEEecCC---cceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-----
Confidence            45677888889999999999   89999999     899999999866554433111113456779999999999     


Q ss_pred             CeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      +-|++|+.  ++.|||+..........+....     ..+.+++.+| |.+..+++..||.|.|||+.+...++.+++|.
T Consensus       478 rtLivGGeastlsiWDLAapTprikaeltssa-----paCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             ceEEeccccceeeeeeccCCCcchhhhcCCcc-----hhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence            88888886  9999999987744545554433     5788999998 99999999999999999999999999999999


Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      +.+.||..+ ++..|-+|+-|.+|+.||+|+++.+....    -...|.++-.+| ++..+++|-.++. +.|...... 
T Consensus       552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP-~~dWlavGMens~-vevlh~skp-  624 (705)
T KOG0639|consen  552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCP-TGDWLAVGMENSN-VEVLHTSKP-  624 (705)
T ss_pred             CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCC-CccceeeecccCc-EEEEecCCc-
Confidence            999999999 89999999999999999999988554422    236899999999 9999999999988 888887653 


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                       ....+..|...|.++.|.+.| +++++.+.|+.+..|.+..+.             .+........|.+...|-+.+++
T Consensus       625 -~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa-------------siFqskE~SsVlsCDIS~ddkyI  689 (705)
T KOG0639|consen  625 -EKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA-------------SIFQSKESSSVLSCDISFDDKYI  689 (705)
T ss_pred             -cceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc-------------ceeeccccCcceeeeeccCceEE
Confidence             356778899999999999999 799999999999999998887             45555677889999999999999


Q ss_pred             EEEecCCeEEEEeC
Q 040307          326 IAIAFVNKLQLLKV  339 (339)
Q Consensus       326 ~~~~~d~~v~~w~v  339 (339)
                      ++++.|....||.|
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999999888875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=227.28  Aligned_cols=278  Identities=18%  Similarity=0.208  Sum_probs=237.6

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      ...|...|.++++|.+   ...+++|+     .+.++||+.+  +.....  +  .. .+.+.+..|.|.+     ++++
T Consensus       369 ~~GHR~dVRsl~vS~d---~~~~~Sga-----~~SikiWn~~--t~kciR--T--i~-~~y~l~~~Fvpgd-----~~Iv  428 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSD---SILLASGA-----GESIKIWNRD--TLKCIR--T--IT-CGYILASKFVPGD-----RYIV  428 (888)
T ss_pred             eccchhheeEEEeecC---ceeeeecC-----CCcEEEEEcc--CcceeE--E--ec-cccEEEEEecCCC-----ceEE
Confidence            3447789999999999   88888888     7999996654  444443  2  22 3378999999999     8999


Q ss_pred             EeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-----Cee--e----
Q 040307           93 TSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-----EIL--E----  159 (339)
Q Consensus        93 ~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-----~~~--~----  159 (339)
                      .|.+  .+.+||+....  .+.+.+.|.     ++|..++.+| ++..+++|+.|.+|++||..-     +..  +    
T Consensus       429 ~G~k~Gel~vfdlaS~~--l~Eti~AHd-----gaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~  500 (888)
T KOG0306|consen  429 LGTKNGELQVFDLASAS--LVETIRAHD-----GAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK  500 (888)
T ss_pred             EeccCCceEEEEeehhh--hhhhhhccc-----cceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence            9985  99999999887  777888888     9999999998 999999999999999999731     111  1    


Q ss_pred             --eeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeE
Q 040307          160 --TQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKV  236 (339)
Q Consensus       160 --~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i  236 (339)
                        +++ .-.+.|.|++++ ++.+|+.+=-|.++++|-+.+.+....++   +|.-||.++..+| +++++++|+.|.+ |
T Consensus       501 ~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY---GHkLPV~smDIS~-DSklivTgSADKn-V  574 (888)
T KOG0306|consen  501 HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY---GHKLPVLSMDISP-DSKLIVTGSADKN-V  574 (888)
T ss_pred             cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec---ccccceeEEeccC-CcCeEEeccCCCc-e
Confidence              122 245789999999 79999999999999999999987544444   3789999999998 9999999999999 9


Q ss_pred             EEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEE
Q 040307          237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVV  316 (339)
Q Consensus       237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  316 (339)
                      ++|-+.- +.+-+++.+|...|.++.|-|.. .++.+++.|+.|+-||-....            ..+...+|...|+++
T Consensus       575 KiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe------------~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  575 KIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE------------EIQKLDGHHSEVWCL  640 (888)
T ss_pred             EEecccc-chhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh------------hheeeccchheeeee
Confidence            9999987 67788999999999999999987 799999999999999999887            455777899999999


Q ss_pred             EecCCCCceEEEecCCeEEEEe
Q 040307          317 RWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       317 ~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      +.+|+|.++++++.|.+||+|.
T Consensus       641 av~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  641 AVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEcCCCCeEEeccCCceeEeee
Confidence            9999999999999999999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-30  Score=197.37  Aligned_cols=278  Identities=15%  Similarity=0.206  Sum_probs=217.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ....|.++.|+++   |.+|++++    .|..++||+....  ....  .+ ..+...|..+.|.....    .++.+..
T Consensus        13 ~~~~i~sl~fs~~---G~~litss----~dDsl~LYd~~~g--~~~~--ti-~skkyG~~~~~Fth~~~----~~i~sSt   76 (311)
T KOG1446|consen   13 TNGKINSLDFSDD---GLLLITSS----EDDSLRLYDSLSG--KQVK--TI-NSKKYGVDLACFTHHSN----TVIHSST   76 (311)
T ss_pred             CCCceeEEEecCC---CCEEEEec----CCCeEEEEEcCCC--ceee--Ee-ecccccccEEEEecCCc----eEEEccC
Confidence            4678999999999   99999988    7999999765543  3333  22 45566789999987772    4444444


Q ss_pred             --C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           96 --D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        96 --~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                        | +|+.-++.+.+  .++.+.||.     ..|+.++.+| -++.+++++.|++|++||++..++...+.....+  .+
T Consensus        77 k~d~tIryLsl~dNk--ylRYF~GH~-----~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~  146 (311)
T KOG1446|consen   77 KEDDTIRYLSLHDNK--YLRYFPGHK-----KRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA  146 (311)
T ss_pred             CCCCceEEEEeecCc--eEEEcCCCC-----ceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence              4 99999999998  899999999     9999999999 6699999999999999999988877666543333  47


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      +|. .|-++|++.....|++||+|.-. .+-..+... ........+.|+| +|++|+.++..+. +++.|.-. +..+.
T Consensus       147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~-~~~lDAf~-G~~~~  223 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASF-IYLLDAFD-GTVKS  223 (311)
T ss_pred             eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCc-EEEEEccC-CcEee
Confidence            888 57777777777799999999863 233333321 3457889999998 9999999999988 99999877 55777


Q ss_pred             EEecCCCCe---eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEEEEecCCCCce
Q 040307          250 VLSKHEGSV---NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINVVRWSPLELDW  325 (339)
Q Consensus       250 ~~~~~~~~v---~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l  325 (339)
                      ++..+...-   ....|.|++ +++++|+.||+|.+|+++++.            ......+ +..++.++.|+|.-  .
T Consensus       224 tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~------------~v~~~~~~~~~~~~~~~fnP~~--~  288 (311)
T KOG1446|consen  224 TFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGK------------KVAVLRGPNGGPVSCVRFNPRY--A  288 (311)
T ss_pred             eEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCc------------EeeEecCCCCCCccccccCCce--e
Confidence            777765433   578999999 699999999999999998887            2223334 68889999999984  4


Q ss_pred             EEEecCCeEEEE
Q 040307          326 IAIAFVNKLQLL  337 (339)
Q Consensus       326 ~~~~~d~~v~~w  337 (339)
                      ..++.+..+.+|
T Consensus       289 mf~sa~s~l~fw  300 (311)
T KOG1446|consen  289 MFVSASSNLVFW  300 (311)
T ss_pred             eeeecCceEEEE
Confidence            556666677777

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.1e-31  Score=200.82  Aligned_cols=276  Identities=15%  Similarity=0.238  Sum_probs=214.2

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      -.+.|.+++|||.  ...++++|++    ||+|++|+++..+. ...  .....|.++|.+++|+.++.    ++++.+.
T Consensus        26 P~DsIS~l~FSP~--~~~~~~A~SW----D~tVR~wevq~~g~-~~~--ka~~~~~~PvL~v~Wsddgs----kVf~g~~   92 (347)
T KOG0647|consen   26 PEDSISALAFSPQ--ADNLLAAGSW----DGTVRIWEVQNSGQ-LVP--KAQQSHDGPVLDVCWSDDGS----KVFSGGC   92 (347)
T ss_pred             cccchheeEeccc--cCceEEeccc----CCceEEEEEecCCc-ccc--hhhhccCCCeEEEEEccCCc----eEEeecc
Confidence            3578999999995  2566778884    99999999987632 222  22368999999999999994    4444455


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR--RVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      | .+++||+.+++   ...+..|.     ++|..+.|-+ ...  .|++|+.|.+|+.||++...++.++. -.+.+.++
T Consensus        93 Dk~~k~wDL~S~Q---~~~v~~Hd-----~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   93 DKQAKLWDLASGQ---VSQVAAHD-----APVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             CCceEEEEccCCC---eeeeeecc-----cceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            7 99999999984   55667777     8999999986 444  89999999999999999999888885 45677777


Q ss_pred             EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEE
Q 040307          173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVL  251 (339)
Q Consensus       173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~  251 (339)
                      ..- ..+++.+..++.|.+|+++.+.......+.+ -+-.+++++..+ +.+..+.|+.+|. +.+..+..+. +.-..+
T Consensus       163 Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~Sp-Lk~Q~R~va~f~-d~~~~alGsiEGr-v~iq~id~~~~~~nFtF  238 (347)
T KOG0647|consen  163 DVL-YPMAVVATAERHIAVYNLENPPTEFKRIESP-LKWQTRCVACFQ-DKDGFALGSIEGR-VAIQYIDDPNPKDNFTF  238 (347)
T ss_pred             hcc-CceeEEEecCCcEEEEEcCCCcchhhhhcCc-ccceeeEEEEEe-cCCceEeeeecce-EEEEecCCCCccCceeE
Confidence            665 5577888889999999998775433333322 345788999886 7777799999999 9998887631 333566


Q ss_pred             ecCCC---------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307          252 SKHEG---------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       252 ~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~  322 (339)
                      +.|..         .|++|+|+|.. ..|+|++.||++.+||-....            .......|..+|++.+|+.+|
T Consensus       239 kCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~------------kLk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  239 KCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART------------KLKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             EEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh------------hhhccCcCCCccceeEecCCC
Confidence            66652         57899999998 499999999999999998876            233456789999999999999


Q ss_pred             CceE-EEecC
Q 040307          323 LDWI-AIAFV  331 (339)
Q Consensus       323 ~~l~-~~~~d  331 (339)
                      ..++ |.|.|
T Consensus       306 ~ifaYA~gYD  315 (347)
T KOG0647|consen  306 SIFAYALGYD  315 (347)
T ss_pred             CEEEEEeecc
Confidence            8665 55655

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.7e-31  Score=211.54  Aligned_cols=286  Identities=15%  Similarity=0.187  Sum_probs=228.2

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc--ccce----------eeEe-ecCCCCceEE
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD--FSAD----------NRLI-FDHPYTPTNI   77 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~--~~~~----------~~~~-~~~~~~v~~l   77 (339)
                      ...-.|.-+|.+++++|+   ..+..+++    .+++|.=|+.......  +...          .... ..|...+.++
T Consensus       136 ~~~~~H~~s~~~vals~d---~~~~fsas----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~  208 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPD---DKRVFSAS----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL  208 (479)
T ss_pred             eeeccccCcceEEEeecc---ccceeecC----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence            333457789999999999   99999999    8999988775433211  0000          0111 2688899999


Q ss_pred             EEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 040307           78 AFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR  155 (339)
Q Consensus        78 ~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~  155 (339)
                      +.++|+     ++||+|+ | .|.||+.++.+  .+..+.+|.     ..|.+++|-. ..+.+++++.|+.|++|+++.
T Consensus       209 avS~Dg-----kylatgg~d~~v~Iw~~~t~e--hv~~~~ghr-----~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  209 AVSSDG-----KYLATGGRDRHVQIWDCDTLE--HVKVFKGHR-----GAVSSLAFRK-GTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             EEcCCC-----cEEEecCCCceEEEecCcccc--hhhcccccc-----cceeeeeeec-CccceeeeecCCceEEEehhH
Confidence            999999     9999998 5 89999999988  888899998     9999999985 778999999999999999998


Q ss_pred             CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307          156 EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN  234 (339)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~  234 (339)
                      ...+.++.+|.+.|..+.-. -...+-+|+.|+++++|++...  ...++..  +.+.+-+++|-  +...+++|+.+|.
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg--~~~sidcv~~I--n~~HfvsGSdnG~  349 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRG--GEGSIDCVAFI--NDEHFVSGSDNGS  349 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeC--CCCCeeeEEEe--cccceeeccCCce
Confidence            88888899999999999888 4556666669999999999433  4455555  56789999996  7789999999999


Q ss_pred             eEEEEecCCCCCceEEEe-cC-----------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          235 KVVVLDIRFPTNPVVVLS-KH-----------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       235 ~i~i~d~~~~~~~~~~~~-~~-----------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                       |.+|++.+ .+|+.+.. +|           ..+|++++..|.. .++++|+.+|.|++|.+..+. +        .+.
T Consensus       350 -IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~-r--------~i~  417 (479)
T KOG0299|consen  350 -IALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL-R--------AIN  417 (479)
T ss_pred             -EEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc-c--------ccc
Confidence             99999987 55665443 22           2389999999998 599999999999999999985 1        234


Q ss_pred             ceeeecccceeEEEEecCCCCceEEE-ecCCeE
Q 040307          303 PELCYQSMAEINVVRWSPLELDWIAI-AFVNKL  334 (339)
Q Consensus       303 ~~~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v  334 (339)
                      ++......+.|++++|+++|..++++ +..-.+
T Consensus       418 ~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  418 LLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             eeeecccccEEEEEEEccCCCEEEEeccccccc
Confidence            55555678899999999999977765 444333

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-31  Score=223.31  Aligned_cols=247  Identities=16%  Similarity=0.286  Sum_probs=208.8

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      +..+. .+.|+++.|+++   |.+||+|.    .+|.|.|||..........    ...|...|-+++|.  .     ..
T Consensus       212 l~~~~-~~~vtSv~ws~~---G~~LavG~----~~g~v~iwD~~~~k~~~~~----~~~h~~rvg~laW~--~-----~~  272 (484)
T KOG0305|consen  212 LCSFG-EELVTSVKWSPD---GSHLAVGT----SDGTVQIWDVKEQKKTRTL----RGSHASRVGSLAWN--S-----SV  272 (484)
T ss_pred             eEecC-CCceEEEEECCC---CCEEEEee----cCCeEEEEehhhccccccc----cCCcCceeEEEecc--C-----ce
Confidence            33443 789999999999   99999999    8999999776654433332    23499999999999  3     67


Q ss_pred             EEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307           91 VATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        91 la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                      +.+|+.  .|..+|+...+. ...++.+|.     ..|..+.|++ ++.++|+|+.|+.+.|||....+++..+..|...
T Consensus       273 lssGsr~~~I~~~dvR~~~~-~~~~~~~H~-----qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA  345 (484)
T KOG0305|consen  273 LSSGSRDGKILNHDVRISQH-VVSTLQGHR-----QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA  345 (484)
T ss_pred             EEEecCCCcEEEEEEecchh-hhhhhhccc-----ceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEecccee
Confidence            888874  999999998762 222477888     8999999998 9999999999999999999888889999999999


Q ss_pred             eeEEEecC--CcEEEEEe--CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          169 VYDISWGG--FNVFASVS--GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       169 v~~~~~~~--~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      |..++|+|  ..+||+|+  .|+.|++||..++.....+...    ..|.++.|++...+++.+.+.....|.||+..+ 
T Consensus       346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-  420 (484)
T KOG0305|consen  346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-  420 (484)
T ss_pred             eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-
Confidence            99999994  88999986  5899999999998866665554    799999999966667766555555699999988 


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+++..+.+|...|..++++|+| ..+++|+.|.++++|++-...
T Consensus       421 ~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  421 MKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             cceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence            66789999999999999999999 599999999999999998754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.1e-31  Score=223.13  Aligned_cols=288  Identities=14%  Similarity=0.174  Sum_probs=240.0

Q ss_pred             eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc---ccceeeE-eecCCCCceEEEEcCCCCCCC
Q 040307           12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD---FSADNRL-IFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus        12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~---~~~~~~~-~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      .+......|.+++|-|.....+.|++ -    .++.+..|.++.....   ......+ ..+|...|.++++|.+.    
T Consensus       315 ~~ir~~~kiks~dv~~~~~~~~~lv~-l----~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~----  385 (888)
T KOG0306|consen  315 ETIRTSAKIKSFDVTPSGGTENTLVL-L----ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS----  385 (888)
T ss_pred             HheechhheeEEEEEecCCcceeEEE-e----ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc----
Confidence            34456788999999998543344555 3    4899999888863222   1111111 25899999999999999    


Q ss_pred             CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                       .++++|++ .++||+.++.+  +++++..       ..+.+..|-| .+++++.|...|.+.+||+.+...+.++++|.
T Consensus       386 -~~~~Sga~~SikiWn~~t~k--ciRTi~~-------~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd  454 (888)
T KOG0306|consen  386 -ILLASGAGESIKIWNRDTLK--CIRTITC-------GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHD  454 (888)
T ss_pred             -eeeeecCCCcEEEEEccCcc--eeEEecc-------ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence             89999886 99999999887  8888877       6788999998 88999999999999999999999888999999


Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc-----ee-------eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKER-----ST-------IIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-----~~-------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      +.|++++.+ ++..+++|+.|.+|++||..--..     ..       ...+   -...|.++.++| ++++|+++=.|+
T Consensus       455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe---l~ddvL~v~~Sp-dgk~LaVsLLdn  530 (888)
T KOG0306|consen  455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE---LEDDVLCVSVSP-DGKLLAVSLLDN  530 (888)
T ss_pred             cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe---ccccEEEEEEcC-CCcEEEEEeccC
Confidence            999999999 799999999999999999752211     00       1111   236899999999 999999999999


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI  313 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (339)
                      + ++||-+.+ -+...++-+|.-+|.++..+||+ ++++|||.|.+|+||-++-+.            ....+++|+..|
T Consensus       531 T-VkVyflDt-lKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD------------CHKS~fAHdDSv  595 (888)
T KOG0306|consen  531 T-VKVYFLDT-LKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD------------CHKSFFAHDDSV  595 (888)
T ss_pred             e-EEEEEecc-eeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccch------------hhhhhhcccCce
Confidence            9 99999887 55667888999999999999999 699999999999999999988            233778999999


Q ss_pred             EEEEecCCCCceEEEecCCeEEEEe
Q 040307          314 NVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       314 ~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .++.|.|....++++|.|+.++-|+
T Consensus       596 m~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             eEEEEcccceeEEEecCcceEEeec
Confidence            9999999988888999999999995

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-32  Score=230.65  Aligned_cols=287  Identities=16%  Similarity=0.338  Sum_probs=230.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe--ecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI--FDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .+....+|+.+++   -..+++++     ...+.||.++.............  ......+..|+|....+    ++||+
T Consensus        38 ~k~~~nAIs~nr~---~~qiv~AG-----rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~----NlIAT  105 (839)
T KOG0269|consen   38 LKAKANAISVNRD---INQIVVAG-----RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS----NLIAT  105 (839)
T ss_pred             cccccceEeecCC---cceeEEec-----ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchh----hhhee
Confidence            3567788888898   78888888     68889988877655444421210  11123467888986654    89999


Q ss_pred             eCC--cEEEEeecCC-cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           94 SGD--SLRLWEIHDD-RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        94 ~~~--~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      ++.  .|.+||+... ....+..|..|+     ..+++++|++...++|++|+.||+|++||++..+...++.+....|.
T Consensus       106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~-----Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKSIRNKLLTVFNEHE-----RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR  180 (839)
T ss_pred             ecCCCcEEEEecCccccchhhhHhhhhc-----cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence            984  9999999872 112566788888     99999999998999999999999999999999988888888888999


Q ss_pred             EEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-Cc
Q 040307          171 DISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NP  247 (339)
Q Consensus       171 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~  247 (339)
                      +++|+  +++.|+++...|.+++||+|........+..  |.++|.++.|+| ++.+||+|+.|+. |+|||+.... .+
T Consensus       181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A--H~GpV~c~nwhP-nr~~lATGGRDK~-vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA--HNGPVLCLNWHP-NREWLATGGRDKM-VKIWDMTDSRAKP  256 (839)
T ss_pred             ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc--ccCceEEEeecC-CCceeeecCCCcc-EEEEeccCCCccc
Confidence            99999  6899999999999999999999876665555  899999999999 9999999999999 9999998533 33


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc-
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD-  324 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-  324 (339)
                      +.++. ...+|.+|.|-|..+..|++++  .|-.|+|||++..-           ++-.....|...++.++|...... 
T Consensus       257 ~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----------IP~~t~~eH~~~vt~i~W~~~d~~~  324 (839)
T KOG0269|consen  257 KHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----------IPYATFLEHTDSVTGIAWDSGDRIN  324 (839)
T ss_pred             eeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----------ccceeeeccCccccceeccCCCcee
Confidence            44444 3578999999999888899888  57899999999977           233456679999999999874443 


Q ss_pred             eEEEecCCeEE
Q 040307          325 WIAIAFVNKLQ  335 (339)
Q Consensus       325 l~~~~~d~~v~  335 (339)
                      +.+++.|++|.
T Consensus       325 l~s~sKD~tv~  335 (839)
T KOG0269|consen  325 LWSCSKDGTVL  335 (839)
T ss_pred             eEeecCccHHH
Confidence            55788898763

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-31  Score=202.07  Aligned_cols=286  Identities=15%  Similarity=0.236  Sum_probs=236.5

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |.+.|..++-...   ..++.+++    .|.+-+||.+..  +.+..  .+ .+|.+.|++++|++.+     .++++++
T Consensus       147 HkDGiW~Vaa~~t---qpi~gtAS----ADhTA~iWs~Es--g~CL~--~Y-~GH~GSVNsikfh~s~-----~L~lTaS  209 (481)
T KOG0300|consen  147 HKDGIWHVAADST---QPICGTAS----ADHTARIWSLES--GACLA--TY-TGHTGSVNSIKFHNSG-----LLLLTAS  209 (481)
T ss_pred             cccceeeehhhcC---Ccceeecc----cccceeEEeecc--cccee--ee-cccccceeeEEecccc-----ceEEEcc
Confidence            6789999988877   77899999    799999966554  44443  33 7999999999999999     8999887


Q ss_pred             C--cEEEEee------cCC--------c------------------------ceeEEEeecCCCccCCCCEEEEEEcCCC
Q 040307           96 D--SLRLWEI------HDD--------R------------------------TELKSLLNSNKTSEFSSAITSFDWAGFD  135 (339)
Q Consensus        96 ~--~i~iw~~------~~~--------~------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~  135 (339)
                      +  +..||..      ..+        +                        ..++..+.+|.     ..|.+..|-. .
T Consensus       210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~-----~vV~a~dWL~-g  283 (481)
T KOG0300|consen  210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR-----AVVSACDWLA-G  283 (481)
T ss_pred             CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc-----cceEehhhhc-C
Confidence            4  8899972      110        0                        13455566666     8899999996 8


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307          136 TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL  214 (339)
Q Consensus       136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  214 (339)
                      ++.+++++.|.+..+||+++++.+..+.+|....+.++-+ ...++++.+.|.+.++||+|..-.....+.+  |...|+
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG--HtdtVT  361 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG--HTDTVT  361 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc--ccccee
Confidence            9999999999999999999999999999999999999888 5778899999999999999966555566665  889999


Q ss_pred             EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307          215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN  294 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  294 (339)
                      ++.|.  .+..+++|+.|.+ |++||++++..|+.++.. ..+++.++.+..+ .+++.--.+..|++||+....- +  
T Consensus       362 S~vF~--~dd~vVSgSDDrT-vKvWdLrNMRsplATIRt-dS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~Rl-a--  433 (481)
T KOG0300|consen  362 SVVFN--TDDRVVSGSDDRT-VKVWDLRNMRSPLATIRT-DSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRL-A--  433 (481)
T ss_pred             EEEEe--cCCceeecCCCce-EEEeeeccccCcceeeec-CCccceeEeecCC-ceEEeccCCceEEEEecCCCcc-c--
Confidence            99997  5678889999998 999999999999999986 6789999999888 4888888889999999988661 0  


Q ss_pred             CCCCCcccceeeecccceeEEEEecCCCC--ceEEEecCCeEEEEeC
Q 040307          295 GGPSGDVEPELCYQSMAEINVVRWSPLEL--DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~--~l~~~~~d~~v~~w~v  339 (339)
                           .++.....+|...|++++|..+.+  .|++++.|..+.-|+|
T Consensus       434 -----RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  434 -----RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             -----cCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence                 111224557999999999987654  4889999999999975

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-30  Score=209.03  Aligned_cols=295  Identities=20%  Similarity=0.271  Sum_probs=227.6

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC--CCCCCeEEEeC-C-c
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE--TLNPDIVATSG-D-S   97 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~~~la~~~-~-~   97 (339)
                      .+..-|.   ..++++|-. .+....+.+|-++.....+...+.+  -......|++|...+.  +..++++|.|+ + .
T Consensus       130 e~~V~ps---DnlIl~ar~-eddvs~LEvYVyn~~e~nlYvHHD~--ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~  203 (463)
T KOG0270|consen  130 EEQVKPS---DNLILCARN-EDDVSYLEVYVYNEEEENLYVHHDF--ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE  203 (463)
T ss_pred             cceeccC---CcEEEEeec-cCCceEEEEEEEcCCCcceeEecce--eccCcchhhhhhhcCCCCCCCcceEEEeccCce
Confidence            4455565   666777663 3335677777788776555543222  2244567888865421  12337999998 6 9


Q ss_pred             EEEEeecCCc-ceeEEEe-------------ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307           98 LRLWEIHDDR-TELKSLL-------------NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV  163 (339)
Q Consensus        98 i~iw~~~~~~-~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  163 (339)
                      |.|||++-.. ..+..++             +.+...+|..+|..+.|+....+.||+|+.|.+|++||+.++++..++.
T Consensus       204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~  283 (463)
T KOG0270|consen  204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT  283 (463)
T ss_pred             eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence            9999986432 1111111             2233344558899999997667899999999999999999999999999


Q ss_pred             ccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          164 AHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       164 ~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                      .|...|.+++|+  ....|++|+.|+++.+.|.|...........   .+.|-.++|+|.....++++..||. ++-+|+
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~-v~~~D~  359 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGT-VYYFDI  359 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCceeEEEecCCce-EEeeec
Confidence            899999999999  5889999999999999999976554444444   4689999999988889999999999 999999


Q ss_pred             CCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc---cceeEEEEe
Q 040307          242 RFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS---MAEINVVRW  318 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~  318 (339)
                      |++++++.++++|.++|.++++++..+.+++|++.|+.|++|++....             |.....|   .+...++++
T Consensus       360 R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-------------~~~v~~~~~~~~rl~c~~~  426 (463)
T KOG0270|consen  360 RNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-------------PKSVKEHSFKLGRLHCFAL  426 (463)
T ss_pred             CCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-------------Ccccccccccccceeeccc
Confidence            999999999999999999999999988899999999999999999877             4433333   234778889


Q ss_pred             cCCCCceEE-EecCCeEEEEeC
Q 040307          319 SPLELDWIA-IAFVNKLQLLKV  339 (339)
Q Consensus       319 ~p~~~~l~~-~~~d~~v~~w~v  339 (339)
                      .|+-.++++ ++..+.+++|++
T Consensus       427 ~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  427 DPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             CCCcceEEEecCccceEEEeec
Confidence            998887665 556667999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-31  Score=196.70  Aligned_cols=253  Identities=19%  Similarity=0.236  Sum_probs=203.2

Q ss_pred             EeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEc-CCCCCEEEE
Q 040307           66 LIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWA-GFDTRRVAT  141 (339)
Q Consensus        66 ~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~  141 (339)
                      +...|.+.|..+...-.+     +.||+++ | +|+|+.+++... .++.+|.+|.     +||..++|. |.-|.+||+
T Consensus         6 idt~H~D~IHda~lDyyg-----krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~-----GPVwqv~wahPk~G~iLAS   75 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYG-----KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS-----GPVWKVAWAHPKFGTILAS   75 (299)
T ss_pred             hhhhhhhhhhHhhhhhhc-----ceeeeecCCccEEEEEEcCCCCceeeeEecCCC-----CCeeEEeecccccCcEeeE
Confidence            346799999999988888     7888887 6 999999987653 6888999999     999999995 557899999


Q ss_pred             EeCCCeEEEEECCCCe--eeeeeeccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307          142 CSVDTTCVIWDIDREI--LETQLVAHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL  216 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  216 (339)
                      ++.||.|.||.-+.++  .......|...|++++|.|   +-.|++++.||.|.+.+.+....-........|.-.++++
T Consensus        76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence            9999999999988875  3445578999999999984   7789999999999999988763221112222377899999


Q ss_pred             EEecCC--C-----------CeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCC---CCeEEEEeCCCc
Q 040307          217 EWNKAD--P-----------RFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLY---GRRLCSVADDSR  279 (339)
Q Consensus       217 ~~~p~~--~-----------~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~  279 (339)
                      +|.|..  |           +.|++|+.|+. |+||+..... ....++.+|.+.|+.++|.|.-   ...||+++.||+
T Consensus       156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             eecCcCCCccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence            999841  2           56999999999 9999987642 2334589999999999999974   247999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          280 ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       280 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      |.||..+...         ...+...+......+..+.||+.|..|..++.|+.+.+|+
T Consensus       235 viIwt~~~e~---------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  235 VIIWTKDEEY---------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             EEEEEecCcc---------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9999888443         0112334445677899999999998777788999999996

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.8e-30  Score=195.40  Aligned_cols=268  Identities=17%  Similarity=0.208  Sum_probs=211.5

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      -.+.|.++.|+|.   ++.|+++++    ||.+++|+....  ....    .+.|..++.+.+|.++.     ..+..+-
T Consensus        12 P~d~IS~v~f~~~---~~~LLvssW----DgslrlYdv~~~--~l~~----~~~~~~plL~c~F~d~~-----~~~~G~~   73 (323)
T KOG1036|consen   12 PEDGISSVKFSPS---SSDLLVSSW----DGSLRLYDVPAN--SLKL----KFKHGAPLLDCAFADES-----TIVTGGL   73 (323)
T ss_pred             ChhceeeEEEcCc---CCcEEEEec----cCcEEEEeccch--hhhh----heecCCceeeeeccCCc-----eEEEecc
Confidence            3578999999998   888888885    999999887766  3332    47899999999999976     5555555


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                      | .|+.+|++++.   ...+..|.     .+|.++.+++ ....+++|+.|++|++||.+.......+. ....|.++..
T Consensus        74 dg~vr~~Dln~~~---~~~igth~-----~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   74 DGQVRRYDLNTGN---EDQIGTHD-----EGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV  143 (323)
T ss_pred             CceEEEEEecCCc---ceeeccCC-----CceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence            7 99999999984   45566677     8999999997 77899999999999999998755555554 3448888887


Q ss_pred             cCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC---CCceEEE
Q 040307          175 GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP---TNPVVVL  251 (339)
Q Consensus       175 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~---~~~~~~~  251 (339)
                      . ++.|+.|+.+..+.+||+|......+..+. .-+..++++++.| ++.-.++++.+|+ |.+=.+...   ......+
T Consensus       144 ~-g~~LvVg~~~r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~p-n~eGy~~sSieGR-VavE~~d~s~~~~skkyaF  219 (323)
T KOG1036|consen  144 S-GNRLVVGTSDRKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVP-NGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAF  219 (323)
T ss_pred             c-CCEEEEeecCceEEEEEcccccchhhhccc-cceeEEEEEEEec-CCCceEEEeecce-EEEEccCCchHHhhhceeE
Confidence            7 888999999999999999998865543333 2356889999999 7888888899998 766544432   1234556


Q ss_pred             ecCCC---------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCC
Q 040307          252 SKHEG---------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPL  321 (339)
Q Consensus       252 ~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~  321 (339)
                      +.|..         +|++++|+|-. ..|+||+.||.|.+||+...+             .+ .+......|.+++|+.+
T Consensus       220 kCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK-------------rl~q~~~~~~SI~slsfs~d  285 (323)
T KOG1036|consen  220 KCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK-------------RLKQLAKYETSISSLSFSMD  285 (323)
T ss_pred             EeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh-------------hhhhccCCCCceEEEEeccC
Confidence            66643         79999999997 599999999999999999987             33 23334567999999999


Q ss_pred             CCceEEEe
Q 040307          322 ELDWIAIA  329 (339)
Q Consensus       322 ~~~l~~~~  329 (339)
                      |..|+.++
T Consensus       286 G~~LAia~  293 (323)
T KOG1036|consen  286 GSLLAIAS  293 (323)
T ss_pred             CCeEEEEe
Confidence            98766554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.7e-30  Score=223.16  Aligned_cols=271  Identities=15%  Similarity=0.182  Sum_probs=227.0

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +...+.+..|.++     ++++++    .+.+|++|+....  ....  .-..+|.+.|.++++..-+     .+|++|+
T Consensus       207 ~~~~~~~~q~~~~-----~~~~~s----~~~tl~~~~~~~~--~~i~--~~l~GH~g~V~~l~~~~~~-----~~lvsgS  268 (537)
T KOG0274|consen  207 DDHVVLCLQLHDG-----FFKSGS----DDSTLHLWDLNNG--YLIL--TRLVGHFGGVWGLAFPSGG-----DKLVSGS  268 (537)
T ss_pred             CcchhhhheeecC-----eEEecC----CCceeEEeecccc--eEEE--eeccCCCCCceeEEEecCC-----CEEEEEe
Confidence            3567888888855     788888    7999999665543  3332  2126999999999998755     8999998


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                       | ++++||..+++  +...+.+|.     ..|.++...   +.++++|+.|.+|++|+++++..+..+.+|.++|+++.
T Consensus       269 ~D~t~rvWd~~sg~--C~~~l~gh~-----stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  269 TDKTERVWDCSTGE--CTHSLQGHT-----SSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ  338 (537)
T ss_pred             cCCcEEeEecCCCc--EEEEecCCC-----ceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence             6 99999999998  999999998     889998875   47888899999999999999999999988999999999


Q ss_pred             ecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307          174 WGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK  253 (339)
Q Consensus       174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~  253 (339)
                      .+ +.++++|+.|++|++||+++.+....+ .+  |...|.++.+.+ . ..+++|+.|+. |++||++...+++..+.+
T Consensus       339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl-~g--H~~~V~sl~~~~-~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSL-SG--HTGRVYSLIVDS-E-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             ec-CCEEEEEecCceEEEEEhhhceeeeee-cC--CcceEEEEEecC-c-ceEEeeeeccc-eEeecCCchhhhhhhhcC
Confidence            98 889999999999999999977754443 33  789999998864 3 89999999998 999999984378999999


Q ss_pred             CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec-ccceeEEEEecCCCCceEEEecC
Q 040307          254 HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ-SMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      |..-+..+.+.  + ++|++++.|+.|++||....+             .. ...+ |...|..+++.  .+.+++++.|
T Consensus       412 h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~-------------~~~~~~~~~~~~v~~l~~~--~~~il~s~~~  473 (537)
T KOG0274|consen  412 HTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGE-------------CLRTLEGRHVGGVSALALG--KEEILCSSDD  473 (537)
T ss_pred             Ccccccccccc--c-ceeEeccccccEEEeecccCc-------------eeeeeccCCcccEEEeecC--cceEEEEecC
Confidence            99988776654  3 589999999999999999988             44 3334 56889999887  4568899999


Q ss_pred             CeEEEEeC
Q 040307          332 NKLQLLKV  339 (339)
Q Consensus       332 ~~v~~w~v  339 (339)
                      +.+++|++
T Consensus       474 ~~~~l~dl  481 (537)
T KOG0274|consen  474 GSVKLWDL  481 (537)
T ss_pred             CeeEEEec
Confidence            99999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.7e-31  Score=227.12  Aligned_cols=248  Identities=20%  Similarity=0.367  Sum_probs=203.8

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      ......+|...++.     .-++.++. .+.||.++.........+. +.+...+ ..+..+.|+....++||+++..|.
T Consensus        38 ~k~~~nAIs~nr~~-----~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~-~S~~DVkW~~~~~NlIAT~s~nG~  111 (839)
T KOG0269|consen   38 LKAKANAISVNRDI-----NQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKF-YSAADVKWGQLYSNLIATCSTNGV  111 (839)
T ss_pred             cccccceEeecCCc-----ceeEEecccceeeEeeCcccCCcceeeeccccccee-eehhhcccccchhhhheeecCCCc
Confidence            34567788888888     66777776 8899988765422222222 1111111 456788898768899999999999


Q ss_pred             EEEEECCC---CeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          148 CVIWDIDR---EILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       148 v~i~d~~~---~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      |.+||+..   .+.+..+..|+..++++.|+  ..++|++|+.||.|++||+|..+.....+.   ....|+.++|+|..
T Consensus       112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~  188 (839)
T KOG0269|consen  112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGY  188 (839)
T ss_pred             EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCC
Confidence            99999977   55667889999999999999  689999999999999999999886655544   35689999999988


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                      +.+++++.+.|. +++||+|.+.++...+.+|.++|.++.|+|++ .+||||+.|+.|+|||+....           ..
T Consensus       189 ~~~F~s~~dsG~-lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~-----------~~  255 (839)
T KOG0269|consen  189 GNKFASIHDSGY-LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSR-----------AK  255 (839)
T ss_pred             CceEEEecCCce-EEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCC-----------cc
Confidence            999999888888 99999999999999999999999999999988 699999999999999999766           34


Q ss_pred             ceeeecccceeEEEEecCCCCceEEEe---cCCeEEEEeC
Q 040307          303 PELCYQSMAEINVVRWSPLELDWIAIA---FVNKLQLLKV  339 (339)
Q Consensus       303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~---~d~~v~~w~v  339 (339)
                      +........+|..|.|-|..++.++.|   .|-.|+||+|
T Consensus       256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv  295 (839)
T KOG0269|consen  256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV  295 (839)
T ss_pred             ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence            556667788999999999998877654   5788999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.1e-30  Score=211.37  Aligned_cols=239  Identities=17%  Similarity=0.210  Sum_probs=202.9

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC  148 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v  148 (339)
                      ..+.|.+++|+|...    .-+|+.+. .+.||+..+..  ...++...+     ..+.+++|.. ||.++++|+..|.|
T Consensus        25 e~~~vssl~fsp~~P----~d~aVt~S~rvqly~~~~~~--~~k~~srFk-----~~v~s~~fR~-DG~LlaaGD~sG~V   92 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHP----YDFAVTSSVRVQLYSSVTRS--VRKTFSRFK-----DVVYSVDFRS-DGRLLAAGDESGHV   92 (487)
T ss_pred             ccCcceeEecCCCCC----CceEEecccEEEEEecchhh--hhhhHHhhc-----cceeEEEeec-CCeEEEccCCcCcE
Confidence            456799999999873    66666665 99999988775  444444444     7899999996 99999999999999


Q ss_pred             EEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          149 VIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                      +|+|+.+...++.+.+|..++..+.|+  ++..|++|+.|+.+++||+.+...   ......|+..|.+.+|+|.++.++
T Consensus        93 ~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen   93 KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEE
Confidence            999987766788899999999999999  578899999999999999998873   334445889999999999888999


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-e
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-L  305 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~  305 (339)
                      ++|+.||. |++||++.....+.++. |..+|..+.+-|.| .++++++. +.|++||+..+.            +.. .
T Consensus       170 vtGsYDg~-vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~------------qll~~  233 (487)
T KOG0310|consen  170 VTGSYDGK-VRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGG------------QLLTS  233 (487)
T ss_pred             EecCCCce-EEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCc------------eehhh
Confidence            99999999 99999998666666665 78999999999998 48888875 589999999776            222 3


Q ss_pred             eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...|...|+|+++..++..|++++-|+.+++|++
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             hhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence            3459999999999999999999999999999973

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=8e-30  Score=205.11  Aligned_cols=285  Identities=12%  Similarity=0.135  Sum_probs=230.7

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      ..+|+++.|+|.   ..+|++|+    .|+.++||.++........  .+ .--..+|.+..|.|+|.    ..+++++.
T Consensus       213 ~~~I~sv~FHp~---~plllvaG----~d~~lrifqvDGk~N~~lq--S~-~l~~fPi~~a~f~p~G~----~~i~~s~r  278 (514)
T KOG2055|consen  213 HGGITSVQFHPT---APLLLVAG----LDGTLRIFQVDGKVNPKLQ--SI-HLEKFPIQKAEFAPNGH----SVIFTSGR  278 (514)
T ss_pred             cCCceEEEecCC---CceEEEec----CCCcEEEEEecCccChhhe--ee-eeccCccceeeecCCCc----eEEEeccc
Confidence            478999999999   99999999    6999999999887776555  33 23467899999999993    37777775


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                        .++.||+.+.+...+..+.++..    ..+..+..+| ++++|+..+..|.|.+....+++.+..++ -.+.|..++|
T Consensus       279 rky~ysyDle~ak~~k~~~~~g~e~----~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~f  352 (514)
T KOG2055|consen  279 RKYLYSYDLETAKVTKLKPPYGVEE----KSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTF  352 (514)
T ss_pred             ceEEEEeeccccccccccCCCCccc----chhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEE
Confidence              89999999988666666666541    4567788887 99999999999999999999999888886 5678999999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC-----CCCce
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF-----PTNPV  248 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~-----~~~~~  248 (339)
                      + ++..|++++.+|.|.+||++...........  ..-.-++++.++ ++.+||+|+..|- |.|||..+     ..+|+
T Consensus       353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~-ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPi  428 (514)
T KOG2055|consen  353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISL-NGSYLATGSDSGI-VNIYDGNSCFASTNPKPI  428 (514)
T ss_pred             ecCCcEEEEEcCCceEEEEecCCcceEEEEeec--CccceeeeeecC-CCceEEeccCcce-EEEeccchhhccCCCCch
Confidence            9 8999999999999999999999755554433  223346677776 8899999999998 99999643     24677


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceee----ecccceeEEEEecCCC
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELC----YQSMAEINVVRWSPLE  322 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p~~  322 (339)
                      ..+..-...|++++|+|+. .+||.+|  .+..+++-.+....             ....    -..-+.|++++|||.+
T Consensus       429 k~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~T-------------VFsNfP~~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  429 KTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCT-------------VFSNFPTSNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             hhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEecccee-------------eeccCCCCCCcccceEEEEecCCC
Confidence            7777777899999999999 5888887  46789998887765             1211    1234579999999999


Q ss_pred             CceEEEecCCeEEEEeC
Q 040307          323 LDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       323 ~~l~~~~~d~~v~~w~v  339 (339)
                      .+++.+..+|.+.+|++
T Consensus       495 G~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  495 GYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ceEEeecCCCceeeEee
Confidence            88888889999999986

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.2e-28  Score=214.64  Aligned_cols=248  Identities=17%  Similarity=0.262  Sum_probs=182.5

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc------eeEEEee
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT------ELKSLLN  115 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~------~~~~~~~  115 (339)
                      ..+.|++|+....  ....  .+ .+|.+.|.+++|+|+..    .+||+|+ | .|+||++.+...      .+...+.
T Consensus        52 ~~gvI~L~~~~r~--~~v~--~L-~gH~~~V~~lafsP~~~----~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         52 LIGAIRLENQMRK--PPVI--KL-KGHTSSILDLQFNPCFS----EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             ceeEEEeeecCCC--ceEE--EE-cCCCCCEEEEEEcCCCC----CEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            5788999765443  2221  33 68999999999999732    7899988 4 999999976421      2345677


Q ss_pred             cCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEE
Q 040307          116 SNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFD  193 (339)
Q Consensus       116 ~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d  193 (339)
                      +|.     ..|.+++|+| ++. +|++++.|+.|++||+++++....+. |...|.+++|+ ++.+|++++.|+.|++||
T Consensus       123 gH~-----~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD  195 (568)
T PTZ00420        123 GHK-----KKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIID  195 (568)
T ss_pred             cCC-----CcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence            777     8999999999 665 56789999999999999998777775 66789999999 899999999999999999


Q ss_pred             CCCCcceeeEEeCCCCCCCeEE-----EEEecCCCCeEEEEeeCC---CeEEEEecCCCCCceEEEecCC--CCeeEEEe
Q 040307          194 LRDKERSTIIYENPVQDCPLLR-----LEWNKADPRFMATVGMDS---NKVVVLDIRFPTNPVVVLSKHE--GSVNGISW  263 (339)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~-----~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~  263 (339)
                      +++++.... +..  |.+.+..     ..|++ ++.+|++++.++   ++|+|||++....++..+..+.  +.+.....
T Consensus       196 ~Rsg~~i~t-l~g--H~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D  271 (568)
T PTZ00420        196 PRKQEIASS-FHI--HDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD  271 (568)
T ss_pred             CCCCcEEEE-Eec--ccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence            999875543 333  4444332     23456 778888877775   2499999997677776654332  23333333


Q ss_pred             ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307          264 APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL  323 (339)
Q Consensus       264 ~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  323 (339)
                      .+++ .++++|+.|+.|++|++..+.           ...+..+.+..++.+++|.|...
T Consensus       272 ~~tg-~l~lsGkGD~tIr~~e~~~~~-----------~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        272 ESTG-LIYLIGKGDGNCRYYQHSLGS-----------IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             CCCC-CEEEEEECCCeEEEEEccCCc-----------EEeecccccCCCccceEEccccc
Confidence            4446 789999999999999997654           12233445677888899999753

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5.4e-29  Score=215.65  Aligned_cols=240  Identities=17%  Similarity=0.241  Sum_probs=181.3

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce-----------eEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE-----------LKSLLNSNKTSEFSSAITSFDWAGFDTRRV  139 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  139 (339)
                      ..|.....++++.    .++++..+ ....|+...+...           ....+.+|.     +.|++++|+|.++++|
T Consensus        21 ~~i~~~~~~~d~~----~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-----~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         21 LNVTPSTALWDCS----NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-----GPIIDVAFNPFDPQKL   91 (493)
T ss_pred             eccccccccCCCC----CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-----CCEEEEEEcCCCCCEE
Confidence            3455566666752    34444444 5567765443200           011355666     8999999998778899


Q ss_pred             EEEeCCCeEEEEECCCC-------eeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC
Q 040307          140 ATCSVDTTCVIWDIDRE-------ILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD  210 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  210 (339)
                      ++|+.|++|++||+.++       +++..+.+|...|.+++|++  +++|++++.|+.|++||+++++.... ..  .|.
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~-l~--~h~  168 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV-IK--CHS  168 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE-Ec--CCC
Confidence            99999999999999764       24667889999999999994  47999999999999999998764333 22  367


Q ss_pred             CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCC-eeEEEeccCCCCeEEEEe----CCCcEEEEEe
Q 040307          211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGS-VNGISWAPLYGRRLCSVA----DDSRALIWEV  285 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~----~dg~v~iwd~  285 (339)
                      ..|.+++|+| ++.+|++++.|+. |++||++. ++.+..+.+|.+. +..+.|.+++. .+++++    .|+.|++||+
T Consensus       169 ~~V~sla~sp-dG~lLatgs~Dg~-IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        169 DQITSLEWNL-DGSLLCTTSKDKK-LNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             CceEEEEEEC-CCCEEEEecCCCE-EEEEECCC-CcEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeC
Confidence            7899999998 8999999999999 99999998 5677888888765 45788999875 555543    4789999999


Q ss_pred             cCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307          286 VGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                      +...            .+....  .....+....|+|++..+++++ .|+.|++|++
T Consensus       245 r~~~------------~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        245 RKMA------------SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCC------------CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            8765            233322  2344566778999998887777 5999999985

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.97  E-value=5.3e-30  Score=201.26  Aligned_cols=258  Identities=18%  Similarity=0.364  Sum_probs=202.6

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCC--------------cceeEEEeecCCCccCCCCEEEEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDD--------------RTELKSLLNSNKTSEFSSAITSFDW  131 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~  131 (339)
                      .+|.+.++.+.-++.+.   ..+.|+-++  .|+||++...              +.+++.++.+|.     ..=.+++|
T Consensus       148 i~h~g~~NRvr~~~~~~---~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-----~EGy~LdW  219 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGN---EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-----GEGYGLDW  219 (440)
T ss_pred             cccccccceeeecccCC---cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-----ccceeeec
Confidence            47888899888888763   145555555  9999997532              246788888888     55669999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeC
Q 040307          132 AGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYEN  206 (339)
Q Consensus       132 ~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  206 (339)
                      ||.....|++|..-+.|++|...++.   -...+.+|+..|..++|+  ....|++|+.||+|+|||+|.+.....+.. 
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-  298 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-  298 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-
Confidence            99766779999999999999998865   233456799999999999  488999999999999999999854333333 


Q ss_pred             CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC--CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP--TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ..|...|+-+.|+. ...+||+|+.||. ++|||+|..  ++|+..+..|..+|++|.|+|.....|++++.|.+|.|||
T Consensus       299 kAh~sDVNVISWnr-~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD  376 (440)
T KOG0302|consen  299 KAHNSDVNVISWNR-REPLLASGGDDGT-LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD  376 (440)
T ss_pred             eccCCceeeEEccC-CcceeeecCCCce-EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence            34788999999996 5559999999999 999999863  4789999999999999999999878999999999999999


Q ss_pred             ecCCCC----CCCCCCCCCcccceeeecc--cceeEEEEecCCCCceE-EEecCCeEEEE
Q 040307          285 VVGPGY----RSGNGGPSGDVEPELCYQS--MAEINVVRWSPLELDWI-AIAFVNKLQLL  337 (339)
Q Consensus       285 ~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~l~-~~~~d~~v~~w  337 (339)
                      +.....    ..........++|++++-|  +..|..+.|+++-+.++ +++.|| +.||
T Consensus       377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            988763    1111112345678877767  45699999999987766 455555 3444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=6.1e-31  Score=212.62  Aligned_cols=241  Identities=16%  Similarity=0.261  Sum_probs=200.9

Q ss_pred             ecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFP-SEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      .+|+..|+++.|.| .+     .+|++++ | .|+||++-... .+++++.+|.     .+|.+++|+. ++..|++++.
T Consensus       211 ~gH~kgvsai~~fp~~~-----hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~-----k~Vrd~~~s~-~g~~fLS~sf  278 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKG-----HLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHR-----KPVRDASFNN-CGTSFLSASF  278 (503)
T ss_pred             cCCccccchhhhcccee-----eEEEecCCCceEEEEEEecCc-ceehhhhcch-----hhhhhhhccc-cCCeeeeeec
Confidence            58999999999999 66     8888888 6 99999998732 4999999999     9999999997 9999999999


Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      |+.|++||+++|+++..+. ....++|+.|+ + .+.|++|+.|+.|+.||+|+++.... +.  .|-+.|..+.|-+ +
T Consensus       279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-Yd--~hLg~i~~i~F~~-~  353 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-YD--RHLGAILDITFVD-E  353 (503)
T ss_pred             ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-HH--hhhhheeeeEEcc-C
Confidence            9999999999999998885 45578999999 3 58999999999999999999984333 22  3678999999997 9


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      +..+++.+.|+. ++||+.+.+ .++... ..+.....++..+|++ .+++.=+.|+.|.+|.+....          ..
T Consensus       354 g~rFissSDdks-~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~----------r~  420 (503)
T KOG0282|consen  354 GRRFISSSDDKS-VRIWENRIP-VPIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF----------RL  420 (503)
T ss_pred             CceEeeeccCcc-EEEEEcCCC-ccchhhcchhhccCcceecCCCC-CeehhhccCceEEEEeccccc----------cc
Confidence            999999999999 999999873 333322 2233467789999999 599999999999999977655          11


Q ss_pred             cce-eeecc--cceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          302 EPE-LCYQS--MAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       302 ~~~-~~~~~--~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ... ...+|  .+--..+.|||||++|++|..||.+.+|+
T Consensus       421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence            111 33345  44567899999999999999999999997

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-30  Score=205.65  Aligned_cols=245  Identities=18%  Similarity=0.278  Sum_probs=196.0

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |..+|..+.||||   .++|++++    .+..+.+||.+  ++....  .+..++...+.+.+|.||+     .-+++|+
T Consensus       268 h~~~V~yi~wSPD---dryLlaCg----~~e~~~lwDv~--tgd~~~--~y~~~~~~S~~sc~W~pDg-----~~~V~Gs  331 (519)
T KOG0293|consen  268 HSQPVSYIMWSPD---DRYLLACG----FDEVLSLWDVD--TGDLRH--LYPSGLGFSVSSCAWCPDG-----FRFVTGS  331 (519)
T ss_pred             ccCceEEEEECCC---CCeEEecC----chHheeeccCC--cchhhh--hcccCcCCCcceeEEccCC-----ceeEecC
Confidence            6789999999999   88888877    47788885555  444443  2234566889999999999     7788887


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                       | ++..|+++...   ....++-.    ...|.+++..+ ||+++++...|..|++++.++......+. ...+|++++
T Consensus       332 ~dr~i~~wdlDgn~---~~~W~gvr----~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~  402 (519)
T KOG0293|consen  332 PDRTIIMWDLDGNI---LGNWEGVR----DPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFS  402 (519)
T ss_pred             CCCcEEEecCCcch---hhcccccc----cceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEE
Confidence             6 99999998774   22223221    15689999997 99999999999999999998776554444 456899999


Q ss_pred             ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      .+ +++++++.=.+..+++||+.....+.. +.+.....-+..-+|.-.+..++++|++|+. |+||+... ++++..+.
T Consensus       403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~k-Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-gkll~~Ls  479 (519)
T KOG0293|consen  403 ISKDGKLALVNLQDQEIHLWDLEENKLVRK-YFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-GKLLAVLS  479 (519)
T ss_pred             EcCCCcEEEEEcccCeeEEeecchhhHHHH-hhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-CceeEeec
Confidence            99 899999988999999999997664444 3332233445566776556689999999999 99999887 88999999


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      +|...|++|+|+|..+.++|+++.||+|+||.....
T Consensus       480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            999999999999999899999999999999987654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.5e-29  Score=196.65  Aligned_cols=238  Identities=15%  Similarity=0.226  Sum_probs=200.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..|...|.+++.+|+.     .++|+|++  ...+|++.+++  ....+.+|+     ..|+++.|+- ++.+||+|+.+
T Consensus        61 ~~H~~svFavsl~P~~-----~l~aTGGgDD~AflW~~~~ge--~~~eltgHK-----DSVt~~~Fsh-dgtlLATGdms  127 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNN-----NLVATGGGDDLAFLWDISTGE--FAGELTGHK-----DSVTCCSFSH-DGTLLATGDMS  127 (399)
T ss_pred             hhcCCceEEEEeCCCC-----ceEEecCCCceEEEEEccCCc--ceeEecCCC-----CceEEEEEcc-CceEEEecCCC
Confidence            6899999999999977     89999984  99999999998  788899999     9999999995 99999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |.|+||+..++.....+...-..+.-+.|+ -..+|+.|+.||.+.+|.+.+.. ...++.+  |..++++-.|.| +|+
T Consensus       128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~G--h~~~ct~G~f~p-dGK  203 (399)
T KOG0296|consen  128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSG--HNSPCTCGEFIP-DGK  203 (399)
T ss_pred             ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecC--CCCCcccccccC-CCc
Confidence            999999999998888886556778889999 58899999999999999999874 3344444  788999999999 899


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEe---------------------------------------------------c
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLS---------------------------------------------------K  253 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~---------------------------------------------------~  253 (339)
                      .++++..|++ |++||..+ ++|+..+.                                                   .
T Consensus       204 r~~tgy~dgt-i~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~  281 (399)
T KOG0296|consen  204 RILTGYDDGT-IIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS  281 (399)
T ss_pred             eEEEEecCce-EEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence            9999999999 99999987 44444432                                                   0


Q ss_pred             CCC---CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          254 HEG---SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       254 ~~~---~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      +..   .|-++.|+..-+ +.|+|+-||+|.|||+....             +.....|...|..+.|-+ ..+|++++.
T Consensus       282 ~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~~-------------~R~~c~he~~V~~l~w~~-t~~l~t~c~  346 (399)
T KOG0296|consen  282 QEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAAST-------------LRHICEHEDGVTKLKWLN-TDYLLTACA  346 (399)
T ss_pred             chhhhhhhhhcccccccc-hhhcccccceEEEEecccch-------------hheeccCCCceEEEEEcC-cchheeecc
Confidence            111   222333444443 78899999999999999987             667778999999999999 668999999


Q ss_pred             CCeEEEEeC
Q 040307          331 VNKLQLLKV  339 (339)
Q Consensus       331 d~~v~~w~v  339 (339)
                      ||.|+.|+.
T Consensus       347 ~g~v~~wDa  355 (399)
T KOG0296|consen  347 NGKVRQWDA  355 (399)
T ss_pred             CceEEeeec
Confidence            999999983

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3.8e-29  Score=199.82  Aligned_cols=279  Identities=17%  Similarity=0.184  Sum_probs=224.5

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      ..+.++...|.   ...+++|+    .|..+.++|...  +....  .+ .+|...|+.+.|+|+.     ..+++++ +
T Consensus       220 pgi~ald~~~s---~~~ilTGG----~d~~av~~d~~s--~q~l~--~~-~Gh~kki~~v~~~~~~-----~~v~~aSad  282 (506)
T KOG0289|consen  220 PGITALDIIPS---SSKILTGG----EDKTAVLFDKPS--NQILA--TL-KGHTKKITSVKFHKDL-----DTVITASAD  282 (506)
T ss_pred             CCeeEEeecCC---CCcceecC----CCCceEEEecch--hhhhh--hc-cCcceEEEEEEeccch-----hheeecCCc
Confidence            46888888887   77899999    798999955444  44443  33 7999999999999999     7777777 6


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc--CCceeEEE
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH--DREVYDIS  173 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~v~~~~  173 (339)
                       .|+||......  .......|.     .+|+.+..+| ++.||++++.|++....|++++..+......  .-.+++.+
T Consensus       283 ~~i~vws~~~~s--~~~~~~~h~-----~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  283 EIIRVWSVPLSS--EPTSSRPHE-----EPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             ceEEeecccccc--Ccccccccc-----ccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence             99999998876  556667777     9999999998 9999999999999999999999977766432  23589999


Q ss_pred             ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      |+ ||.+|.+|..|+.|++||+.++..... +  +.|.++|..++|+- +|.+|++++.|+. |++||+|+.. ...++.
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~-F--pght~~vk~i~FsE-NGY~Lat~add~~-V~lwDLRKl~-n~kt~~  428 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAK-F--PGHTGPVKAISFSE-NGYWLATAADDGS-VKLWDLRKLK-NFKTIQ  428 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCCcccccc-C--CCCCCceeEEEecc-CceEEEEEecCCe-EEEEEehhhc-ccceee
Confidence            99 899999999999999999999873332 3  44899999999995 9999999999999 9999999844 445544


Q ss_pred             c-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEec
Q 040307          253 K-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       253 ~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      . ....+.++.|.+.| ++|+.++.|=.|++++-.+..           +... ....|.+..+.+.|....+++++++.
T Consensus       429 l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~-----------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm  496 (506)
T KOG0289|consen  429 LDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKS-----------WTEIKELADHSGLSTGVRFGEHAQYLASTSM  496 (506)
T ss_pred             ccccccceeEEEcCCC-CeEEeecceeEEEEEeccccc-----------ceeeehhhhcccccceeeecccceEEeeccc
Confidence            3 23479999999999 699998766555555543333           1222 33457778999999999998889999


Q ss_pred             CCeEEEEeC
Q 040307          331 VNKLQLLKV  339 (339)
Q Consensus       331 d~~v~~w~v  339 (339)
                      |..++++.+
T Consensus       497 d~~l~~~a~  505 (506)
T KOG0289|consen  497 DAILRLYAL  505 (506)
T ss_pred             hhheEEeec
Confidence            999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1e-30  Score=194.76  Aligned_cols=250  Identities=15%  Similarity=0.210  Sum_probs=206.5

Q ss_pred             CCCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307            6 EKKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE   84 (339)
Q Consensus         6 ~~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~   84 (339)
                      .++.-+-+|. |.+.|.+...+.+   ..+-|+++    .|=+-+||+  .-++....    .+.|..-|.+++|+.|. 
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~n---a~~aasaa----adftakvw~--a~tgdelh----sf~hkhivk~~af~~ds-  112 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKN---ATRAASAA----ADFTAKVWD--AVTGDELH----SFEHKHIVKAVAFSQDS-  112 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCch---hhhhhhhc----ccchhhhhh--hhhhhhhh----hhhhhheeeeEEecccc-
Confidence            4455566776 7889999999988   88888888    799999954  33333332    37899999999999999 


Q ss_pred             CCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307           85 TLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL  162 (339)
Q Consensus        85 ~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  162 (339)
                          ..|++|+.  .++|||++..+ .+...+.+|.     +.|..+.|.. ..+.|++++.|++|++||.+++..++++
T Consensus       113 ----~~lltgg~ekllrvfdln~p~-App~E~~ght-----g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL  181 (334)
T KOG0278|consen  113 ----NYLLTGGQEKLLRVFDLNRPK-APPKEISGHT-----GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSL  181 (334)
T ss_pred             ----hhhhccchHHHhhhhhccCCC-CCchhhcCCC-----CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEE
Confidence                88999984  99999998876 3556778888     9999999995 7888999999999999999999999998


Q ss_pred             eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          163 VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       163 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      . ...+|+++.+++...+++....+.|.+||..+-........    ...|.+...+| +...+++|+.|.. ++.||..
T Consensus       182 ~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~----P~nV~SASL~P-~k~~fVaGged~~-~~kfDy~  254 (334)
T KOG0278|consen  182 E-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM----PCNVESASLHP-KKEFFVAGGEDFK-VYKFDYN  254 (334)
T ss_pred             e-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC----ccccccccccC-CCceEEecCcceE-EEEEecc
Confidence            6 56789999999434445555678899999998875544332    36889999999 6689999999998 9999999


Q ss_pred             CCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          243 FPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       243 ~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      + +..+.. ..+|.++|.++.|+|+|+ +.++|++||+|+||.+...+
T Consensus       255 T-geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  255 T-GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             C-CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCC
Confidence            8 444555 489999999999999995 99999999999999998877

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.8e-28  Score=213.42  Aligned_cols=216  Identities=16%  Similarity=0.178  Sum_probs=168.2

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe--------eeeeeeccCCc
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--------LETQLVAHDRE  168 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--------~~~~~~~~~~~  168 (339)
                      .+++|+.....  .+..+.+|.     .+|.+++|+|.++++|++|+.|++|++||+.++.        ++..+.+|...
T Consensus        55 vI~L~~~~r~~--~v~~L~gH~-----~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         55 AIRLENQMRKP--PVIKLKGHT-----SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             EEEeeecCCCc--eEEEEcCCC-----CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            78999887654  777888888     8999999999558999999999999999997642        34467789999


Q ss_pred             eeEEEecC-Cc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          169 VYDISWGG-FN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       169 v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      |.+++|+| +. +|++++.|+.|++||+++++....+.    +...|.+++|+| +|.+|++++.|+. |+|||++. +.
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~-IrIwD~Rs-g~  200 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKH-MHIIDPRK-QE  200 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCE-EEEEECCC-Cc
Confidence            99999994 44 56799999999999999887443332    346799999998 8999999999998 99999998 66


Q ss_pred             ceEEEecCCCCeeE-----EEeccCCCCeEEEEeCCC----cEEEEEecCCCCCCCCCCCCCcccceeeeccc---ceeE
Q 040307          247 PVVVLSKHEGSVNG-----ISWAPLYGRRLCSVADDS----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSM---AEIN  314 (339)
Q Consensus       247 ~~~~~~~~~~~v~~-----~~~~p~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~  314 (339)
                      .+..+.+|.+.+..     ..|++++ .+|++++.|+    .|+|||++...            .++....+.   +.+.
T Consensus       201 ~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~------------~pl~~~~ld~~~~~L~  267 (568)
T PTZ00420        201 IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTT------------SALVTMSIDNASAPLI  267 (568)
T ss_pred             EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCC------------CceEEEEecCCccceE
Confidence            77889999876543     3355887 5888877664    79999999755            245443333   2333


Q ss_pred             EEEecCCCCceEEEecCCeEEEEeC
Q 040307          315 VVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       315 ~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..-..+++..+++|+.|+.|++|++
T Consensus       268 p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        268 PHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EeeeCCCCCEEEEEECCCeEEEEEc
Confidence            3333455776778889999999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1e-29  Score=195.14  Aligned_cols=255  Identities=20%  Similarity=0.280  Sum_probs=202.6

Q ss_pred             ceeee-eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHT-YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~-~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      +.+.+ |.|.++|.++.|+|.   ..+|++|+    .|++|++||+.....+-..  .. +....+|.++.|+|.|    
T Consensus       163 PvIRTlYDH~devn~l~FHPr---e~ILiS~s----rD~tvKlFDfsK~saKrA~--K~-~qd~~~vrsiSfHPsG----  228 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPR---ETILISGS----RDNTVKLFDFSKTSAKRAF--KV-FQDTEPVRSISFHPSG----  228 (430)
T ss_pred             ceEeehhhccCcccceeecch---hheEEecc----CCCeEEEEecccHHHHHHH--HH-hhccceeeeEeecCCC----
Confidence            44444 468999999999999   99999999    7999999888765433222  22 4556789999999999    


Q ss_pred             CCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-c
Q 040307           88 PDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-A  164 (339)
Q Consensus        88 ~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~  164 (339)
                       .+|+.|.+  ++++||+++-+  +...-.  ....|...|+++.+++ ++++.++++.||.|++||--+++++.++. +
T Consensus       229 -efllvgTdHp~~rlYdv~T~Q--cfvsan--Pd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  229 -EFLLVGTDHPTLRLYDVNTYQ--CFVSAN--PDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             -ceEEEecCCCceeEEecccee--EeeecC--cccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence             89999997  99999999976  433322  2334459999999998 99999999999999999999999998883 5


Q ss_pred             cC-CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC---CCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307          165 HD-REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV---QDCPLLRLEWNKADPRFMATVGMDSNKVVVL  239 (339)
Q Consensus       165 ~~-~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~  239 (339)
                      |. ..|.+..|. +++++++.+.|..+++|.+.+++..... .+.+   ....-+...|+- ...+++.-.+..+.+.-|
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y-tGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsW  380 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY-TGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSW  380 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE-ecCCcccchhhhhhhhhcC-ccceEEccccccCceeec
Confidence            55 478899999 9999999999999999999999865543 3321   112234456774 777777766555559999


Q ss_pred             ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      |.|+..+....-.+|++.++.+.-||.++ .+.+|+.|-.+++|--+
T Consensus       381 daRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  381 DARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             cccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence            99986654445568999999999999996 99999999999999654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-28  Score=188.44  Aligned_cols=264  Identities=14%  Similarity=0.181  Sum_probs=207.6

Q ss_pred             EEEEeeeccccCCeEEEEecCCCC------CcccceeeEe-ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeec
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPET------SDFSADNRLI-FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIH  104 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~------~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~  104 (339)
                      .+++|+    +...|.-++++.+.      ..+...+.+. ..|.+.|++++.+.       .++|+|+ | +|+|||+.
T Consensus         3 ~iIvGt----YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~-------~~~aSGssDetI~IYDm~   71 (362)
T KOG0294|consen    3 EIIVGT----YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG-------PYVASGSSDETIHIYDMR   71 (362)
T ss_pred             eEEEee----eeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc-------eeEeccCCCCcEEEEecc
Confidence            577888    68888887777554      1121111221 37999999999864       7999998 5 99999999


Q ss_pred             CCcceeEEEeecCCCccCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEE
Q 040307          105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDT--RRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFA  181 (339)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~  181 (339)
                      ...  ....+-.|.     +.|+++.|.+ ..  +.|++|+.||.|.+|+...-+.+..+++|.+.|+.++.+| +.+-+
T Consensus        72 k~~--qlg~ll~Ha-----gsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLAL  143 (362)
T KOG0294|consen   72 KRK--QLGILLSHA-----GSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLAL  143 (362)
T ss_pred             chh--hhcceeccc-----cceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEE
Confidence            876  777777887     9999999986 33  3899999999999999999999999999999999999995 77778


Q ss_pred             EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE
Q 040307          182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI  261 (339)
Q Consensus       182 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~  261 (339)
                      +.+.|+.+++|++-.++........    .....+.|+| .|.+++.+..++  |-+|.+.. ......+.. ...+.++
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~L~----~~at~v~w~~-~Gd~F~v~~~~~--i~i~q~d~-A~v~~~i~~-~~r~l~~  214 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLNLK----NKATLVSWSP-QGDHFVVSGRNK--IDIYQLDN-ASVFREIEN-PKRILCA  214 (362)
T ss_pred             EEcCCceeeeehhhcCccceeeccC----CcceeeEEcC-CCCEEEEEeccE--EEEEeccc-HhHhhhhhc-cccceee
Confidence            9999999999999988744433222    2445599998 889888888876  99998876 333333332 3457777


Q ss_pred             EeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe--cCCCCceEEEecCCeEEEEeC
Q 040307          262 SWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW--SPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       262 ~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .|-..+  .|++|+.|+.|.+||.....            .+..+.+|..+|.++.+  .|.+.+|++++.||.|++|++
T Consensus       215 ~~l~~~--~L~vG~d~~~i~~~D~ds~~------------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  215 TFLDGS--ELLVGGDNEWISLKDTDSDT------------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI  280 (362)
T ss_pred             eecCCc--eEEEecCCceEEEeccCCCc------------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence            776554  89999999999999999866            34466789999999884  356778889999999999986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=9.6e-29  Score=185.85  Aligned_cols=233  Identities=18%  Similarity=0.250  Sum_probs=201.6

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      ..+|+.+++.+.++.+|     ++|.+++ | +..+|-..+++  .+.++.+|+     ++|.+++.+- +.+++++|+.
T Consensus         6 l~GHERplTqiKyN~eG-----DLlFscaKD~~~~vw~s~nGe--rlGty~GHt-----GavW~~Did~-~s~~liTGSA   72 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREG-----DLLFSCAKDSTPTVWYSLNGE--RLGTYDGHT-----GAVWCCDIDW-DSKHLITGSA   72 (327)
T ss_pred             cccCccccceEEecCCC-----cEEEEecCCCCceEEEecCCc--eeeeecCCC-----ceEEEEEecC-Ccceeeeccc
Confidence            47999999999999999     8999998 5 99999988887  899999999     9999999985 8999999999


Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-----CCcEEEEECCCCc----ceeeEEeCCCCCCCeE
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-----DCSVRVFDLRDKE----RSTIIYENPVQDCPLL  214 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-----d~~i~i~d~~~~~----~~~~~~~~~~~~~~v~  214 (339)
                      |.++++||+++|+.+..++ ...+|..+.|+ .+++++.+..     .+.|.++|++...    ....+...+.+...++
T Consensus        73 D~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit  151 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT  151 (327)
T ss_pred             cceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence            9999999999999999986 56789999999 7777776653     3679999999543    1111222223568899


Q ss_pred             EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307          215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN  294 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  294 (339)
                      .+-|.| -+++|++|..+|. |..||++++.+.+.....|...|+.++++|+. .++++++.|.+-++||..+..     
T Consensus       152 ~a~Wg~-l~~~ii~Ghe~G~-is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~-----  223 (327)
T KOG0643|consen  152 SALWGP-LGETIIAGHEDGS-ISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLE-----  223 (327)
T ss_pred             eeeecc-cCCEEEEecCCCc-EEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeecccee-----
Confidence            999998 8999999999999 99999999777788888899999999999999 699999999999999999988     


Q ss_pred             CCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          295 GGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                              .+..+....+|++.+++|....++.++
T Consensus       224 --------v~Kty~te~PvN~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  224 --------VLKTYTTERPVNTAAISPLLDHVILGG  250 (327)
T ss_pred             --------eEEEeeecccccceecccccceEEecC
Confidence                    777788889999999999877777554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.6e-28  Score=185.03  Aligned_cols=238  Identities=16%  Similarity=0.142  Sum_probs=192.3

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC--
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV--  144 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  144 (339)
                      ...+.|+++.|+++|     .++++++ | .++|||..+++  ...++..++     -.+..++|-. ..+.++.++.  
T Consensus        12 ~~~~~i~sl~fs~~G-----~~litss~dDsl~LYd~~~g~--~~~ti~skk-----yG~~~~~Fth-~~~~~i~sStk~   78 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDG-----LLLITSSEDDSLRLYDSLSGK--QVKTINSKK-----YGVDLACFTH-HSNTVIHSSTKE   78 (311)
T ss_pred             cCCCceeEEEecCCC-----CEEEEecCCCeEEEEEcCCCc--eeeEeeccc-----ccccEEEEec-CCceEEEccCCC
Confidence            357789999999999     7777765 4 99999999997  777777766     5677788874 4555555555  


Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      |.+|+..++.+.+.++.+.+|...|.+++.+| ++.+++++.|++|++||+|..++...+...     .-..++|.| +|
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-----~~pi~AfDp-~G  152 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-----GRPIAAFDP-EG  152 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-----CCcceeECC-CC
Confidence            88999999999999999999999999999994 789999999999999999987766554433     334679998 99


Q ss_pred             CeEEEEeeCCCeEEEEecCCC-CCceEEEecC---CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          224 RFMATVGMDSNKVVVLDIRFP-TNPVVVLSKH---EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~-~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                      -++|++...+. |++||+|.. ..|..++.-.   ....+.+.|||+| +.|+.++..+.+++.|.-.+.          
T Consensus       153 LifA~~~~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~----------  220 (311)
T KOG1446|consen  153 LIFALANGSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGT----------  220 (311)
T ss_pred             cEEEEecCCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCc----------
Confidence            99999888876 999999986 3466665543   5678999999999 699999999999999998887          


Q ss_pred             cccceeeecc--cc-eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          300 DVEPELCYQS--MA-EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       300 ~~~~~~~~~~--~~-~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                        .......+  .. --.+..|.|+++++++++.||+|.+|++
T Consensus       221 --~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  221 --VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             --EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence              11122222  11 2368899999999999999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-30  Score=229.27  Aligned_cols=297  Identities=19%  Similarity=0.293  Sum_probs=231.0

Q ss_pred             eeEEEeeecCCccc-EEEEeeecc------ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           20 ISTVAWSVRHDRKS-RLAVGSFLE------DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        20 v~~i~~sp~~~~~~-~la~g~~~~------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      -..++|+|+   +. ++|+|+..+      ..+.++.||.++...........-......+.+.|+|.+.++... -+||
T Consensus         9 ta~~awSp~---~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~-GlIa   84 (1049)
T KOG0307|consen    9 TATFAWSPA---SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSH-GLIA   84 (1049)
T ss_pred             cceEEecCC---CchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCcc-ceee
Confidence            446799999   65 777776522      235677888777655543221122345567899999999984100 1466


Q ss_pred             EeCC--cEEEEeecC----CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--ec
Q 040307           93 TSGD--SLRLWEIHD----DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VA  164 (339)
Q Consensus        93 ~~~~--~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~  164 (339)
                      .|.+  .|.+|+...    .+...+.+...|+     ++|..++|++..+++||+|+.||.|.|||++..+.-..+  ..
T Consensus        85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-----G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~  159 (1049)
T KOG0307|consen   85 GGLEDGNIVLYDPASIIANASEEVLATKSKHT-----GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA  159 (1049)
T ss_pred             ccccCCceEEecchhhccCcchHHHhhhcccC-----CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence            6664  999999865    2344566677777     999999999977889999999999999999876533333  23


Q ss_pred             cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEe
Q 040307          165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLD  240 (339)
Q Consensus       165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d  240 (339)
                      ..+.|.+++|+  -..+|++++.+|.+.|||+|..+....+.... ....+..++|+|+....|++++.|..  .|.+||
T Consensus       160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD  238 (1049)
T KOG0307|consen  160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD  238 (1049)
T ss_pred             CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence            45789999999  58899999999999999999997555544432 23568899999988888888887765  699999


Q ss_pred             cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEec
Q 040307          241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWS  319 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~  319 (339)
                      +|....+++.+++|...|.++.|++.++.+|++++.|+.|.+|+.++++             .+ .+-.....+..+.|+
T Consensus       239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-------------vl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-------------VLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce-------------EeeecCCCCcceeeeeec
Confidence            9998999999999999999999999987899999999999999999987             33 223356789999999


Q ss_pred             CCCCceE-EEecCCeEEEEeC
Q 040307          320 PLELDWI-AIAFVNKLQLLKV  339 (339)
Q Consensus       320 p~~~~l~-~~~~d~~v~~w~v  339 (339)
                      |..+.++ +++.||.|.|+.+
T Consensus       306 pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  306 PRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             CCCcchhhhheeccceeeeee
Confidence            9998766 5679999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.97  E-value=1e-28  Score=206.14  Aligned_cols=293  Identities=18%  Similarity=0.253  Sum_probs=214.2

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc-ceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS-ADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      +..+..|++......+||.+.    ++|.|.+++.....-..+ .....-..|...|..+.|-|..     ..|++++ |
T Consensus        51 pPf~~sFs~~~n~eHiLavad----E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge-----~~lVsasGD  121 (720)
T KOG0321|consen   51 PPFADSFSAAPNKEHILAVAD----EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGE-----SLLVSASGD  121 (720)
T ss_pred             CCccccccCCCCccceEEEec----CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCc-----eeEEEccCC
Confidence            446688998877788999999    899999966443222211 1001235899999999999944     5666665 5


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe------------------
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI------------------  157 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~------------------  157 (339)
                       ++++||+++.+..-...+.+|.     ..|.+++|.|.+...|++|+.||.|.|||++...                  
T Consensus       122 sT~r~Wdvk~s~l~G~~~~~GH~-----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~  196 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGRLNLGHT-----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA  196 (720)
T ss_pred             ceeeeeeeccceeecceeecccc-----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence             9999999998844444478888     9999999999899999999999999999987421                  


Q ss_pred             ---------eeeeeeccCCce----eEEEecCCcEEEEEeC-CCcEEEEECCCCcceeeEE-----eCCCC---CCCeEE
Q 040307          158 ---------LETQLVAHDREV----YDISWGGFNVFASVSG-DCSVRVFDLRDKERSTIIY-----ENPVQ---DCPLLR  215 (339)
Q Consensus       158 ---------~~~~~~~~~~~v----~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-----~~~~~---~~~v~~  215 (339)
                               .+....++...|    +.+.|-|...||+++. |+.|++||+|.........     ..+.+   ...+.+
T Consensus       197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n  276 (720)
T KOG0321|consen  197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN  276 (720)
T ss_pred             CCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence                     011112333344    4455558899999988 9999999999876332211     11112   345667


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS  292 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~  292 (339)
                      +.... .|.+|++.+.|+. |++|++.... .|+..+.++...  -..-..+|++ .+|++|+.|...++|.+....   
T Consensus       277 L~lDs-sGt~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e---  350 (720)
T KOG0321|consen  277 LILDS-SGTYLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPE---  350 (720)
T ss_pred             EEecC-CCCeEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCcc---
Confidence            77775 6788888888999 9999998744 344455444321  1233568998 699999999999999999987   


Q ss_pred             CCCCCCCcccceeeecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307          293 GNGGPSGDVEPELCYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v  339 (339)
                              ..+....+|.-.|++++|.|..- -+++++.|.++++|++
T Consensus       351 --------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  351 --------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             --------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence                    34567789999999999999643 2778899999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2e-29  Score=210.78  Aligned_cols=281  Identities=14%  Similarity=0.200  Sum_probs=229.8

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccce--eeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSAD--NRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S   97 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~   97 (339)
                      ++..++.  ++++|.+|+    .||.|++|+......+....  ..+ ..|.+.|+.+....++     +-|++++ | +
T Consensus        29 ~Lq~da~--~~ryLfTgG----RDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~-----~tlIS~SsDtT   96 (735)
T KOG0308|consen   29 ALQLDAP--NGRYLFTGG----RDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNG-----KTLISASSDTT   96 (735)
T ss_pred             hccccCC--CCceEEecC----CCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCC-----CceEEecCCce
Confidence            4444433  477899999    79999999988766643321  122 5799999999999999     6667666 6 9


Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee----------eeeee-ccC
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL----------ETQLV-AHD  166 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~-~~~  166 (339)
                      |++|+...+..-+..++..|+     ..|.|+++-..+..++|+|+-|+.|.+||++++..          ...+. ++.
T Consensus        97 VK~W~~~~~~~~c~stir~H~-----DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHK-----DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             EEEeecccCcchhHhhhhccc-----chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            999999887544788899998     89999999333889999999999999999997721          22223 678


Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      ..|++++.+ .+..|++|+..+.+++||.++.+....+.   +|...|..+..++ +|..+++++.|++ |++||+.. .
T Consensus       172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~d-DGt~~ls~sSDgt-IrlWdLgq-Q  245 (735)
T KOG0308|consen  172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVND-DGTRLLSASSDGT-IRLWDLGQ-Q  245 (735)
T ss_pred             cceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcC-CCCeEeecCCCce-EEeeeccc-c
Confidence            899999999 68899999999999999999998666554   3889999999996 9999999999999 99999998 7


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                      .++.++..|...|+++..+|+- ..+.+|+.||.|..=|+++..            ....+.....+|..+..+.....+
T Consensus       246 rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~------------~~tlick~daPv~~l~~~~~~~~~  312 (735)
T KOG0308|consen  246 RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPA------------KSTLICKEDAPVLKLHLHEHDNSV  312 (735)
T ss_pred             ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCch------------hheEeecCCCchhhhhhccccCCc
Confidence            8899999999999999999998 699999999999999999865            345666667778888777665555


Q ss_pred             EEEecCCeEEEEe
Q 040307          326 IAIAFVNKLQLLK  338 (339)
Q Consensus       326 ~~~~~d~~v~~w~  338 (339)
                      -++..|+.|+-|.
T Consensus       313 WvtTtds~I~rW~  325 (735)
T KOG0308|consen  313 WVTTTDSSIKRWK  325 (735)
T ss_pred             eeeeccccceecC
Confidence            6677788887775

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.97  E-value=3.8e-28  Score=184.67  Aligned_cols=291  Identities=19%  Similarity=0.312  Sum_probs=222.3

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-----cEEEEe
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-----SLRLWE  102 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-----~i~iw~  102 (339)
                      .-.+++|+..-..++.|.+.+++.+...+..  ...+.|.+.|+.++-+|...    ++|+++.    +     .+.||.
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~s--kvf~h~agEvw~las~P~d~----~ilaT~yn~~s~s~vl~~aaiw~   99 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLS--KVFFHHAGEVWDLASSPFDQ----RILATVYNDTSDSGVLTGAAIWQ   99 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhh--hhhhcCCcceehhhcCCCCC----ceEEEEEeccCCCcceeeEEEEe
Confidence            5577788876667899999999888877665  33367889999999999885    8888863    2     688999


Q ss_pred             ecCCc-------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeee-----eccCCce
Q 040307          103 IHDDR-------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQL-----VAHDREV  169 (339)
Q Consensus       103 ~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~-----~~~~~~v  169 (339)
                      +....       .+++..+..    ++.+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+     .++....
T Consensus       100 ipe~~~~S~~~tlE~v~~Ldt----eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~f  173 (370)
T KOG1007|consen  100 IPEPLGQSNSSTLECVASLDT----EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSF  173 (370)
T ss_pred             cccccCccccchhhHhhcCCH----HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeeccccccccccee
Confidence            87653       223333331    1126899999999 888888766 88999999987654 3332     2345567


Q ss_pred             eEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          170 YDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       170 ~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      ++-+|+   +++.+++. .|+++..||+|+..+...+...  |...+..+.|+|+...+|++++.|+. |+|||+|+...
T Consensus       174 tsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA--Hgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~  249 (370)
T KOG1007|consen  174 TSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA--HGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKF  249 (370)
T ss_pred             cccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh--hcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCc
Confidence            888898   47777766 5889999999988766665554  67789999999977788999999999 99999999999


Q ss_pred             ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC--------CCCC---CCCcccce------eeecc
Q 040307          247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS--------GNGG---PSGDVEPE------LCYQS  309 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~--------~~~~---~~~~~~~~------~~~~~  309 (339)
                      |+.++.+|...|+++.|+|..+.+|++|+.|..|.+|-...-...+        .+..   .....+|+      ....|
T Consensus       250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh  329 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH  329 (370)
T ss_pred             cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence            9999999999999999999988899999999999999876544211        0000   00111122      33468


Q ss_pred             cceeEEEEecCCCCceEE-EecCCeEEEEe
Q 040307          310 MAEINVVRWSPLELDWIA-IAFVNKLQLLK  338 (339)
Q Consensus       310 ~~~i~~~~~~p~~~~l~~-~~~d~~v~~w~  338 (339)
                      ...|++++||.-.+.++| -+.||.+.|=+
T Consensus       330 EDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  330 EDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             ccceEEEeeccCCCeeEEEeccCceEEeec
Confidence            999999999999998776 58999987744

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.8e-27  Score=172.50  Aligned_cols=248  Identities=20%  Similarity=0.301  Sum_probs=201.2

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |.+.|+|.+|||.   |+++|+|+    .|.+|++..++.++....-...-..-|.+.|..++|..+.+ ....+|++++
T Consensus        88 hkgsiyc~~ws~~---geliatgs----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~-s~~~il~s~g  159 (350)
T KOG0641|consen   88 HKGSIYCTAWSPC---GELIATGS----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE-SGGAILASAG  159 (350)
T ss_pred             cCccEEEEEecCc---cCeEEecC----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-cCceEEEecC
Confidence            5789999999999   99999999    69999998888766544321111146999999999976543 1226888876


Q ss_pred             --C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--c-----
Q 040307           96 --D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA--H-----  165 (339)
Q Consensus        96 --~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~-----  165 (339)
                        | .|++-|...++  ....+.+|+     +.|.++- + .++-+|++|+.|.+|++||++-..++.++..  |     
T Consensus       160 agdc~iy~tdc~~g~--~~~a~sght-----ghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle  230 (350)
T KOG0641|consen  160 AGDCKIYITDCGRGQ--GFHALSGHT-----GHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE  230 (350)
T ss_pred             CCcceEEEeecCCCC--cceeecCCc-----ccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence              4 77777877776  888889988     8887763 2 2679999999999999999998888777632  2     


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      .+.|.+++.. .+.+|++|-.|....+||+|.++....+ ..  |...|.++.|+| ...++++++.|.. |++-|+...
T Consensus       231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f-~p--hsadir~vrfsp-~a~yllt~syd~~-ikltdlqgd  305 (350)
T KOG0641|consen  231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF-HP--HSADIRCVRFSP-GAHYLLTCSYDMK-IKLTDLQGD  305 (350)
T ss_pred             cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee-CC--CccceeEEEeCC-CceEEEEecccce-EEEeecccc
Confidence            2568888888 5999999999999999999999855543 33  678999999999 9999999999999 999998742


Q ss_pred             ---CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          245 ---TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       245 ---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                         .-++..+..|+..+..+.|+|.. .-+++.+.|.++.+|-+.
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN  349 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence               24566677899999999999998 689999999999999764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.1e-28  Score=195.56  Aligned_cols=238  Identities=19%  Similarity=0.242  Sum_probs=203.8

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      ..+.++...|..     ..+.+|+ | .+.++|...++  .+.++++|.     ..|+.+.++| +...+++++.|..|+
T Consensus       220 pgi~ald~~~s~-----~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~-----kki~~v~~~~-~~~~v~~aSad~~i~  286 (506)
T KOG0289|consen  220 PGITALDIIPSS-----SKILTGGEDKTAVLFDKPSNQ--ILATLKGHT-----KKITSVKFHK-DLDTVITASADEIIR  286 (506)
T ss_pred             CCeeEEeecCCC-----CcceecCCCCceEEEecchhh--hhhhccCcc-----eEEEEEEecc-chhheeecCCcceEE
Confidence            457888888875     6778887 6 99999999887  888999998     8999999998 999999999999999


Q ss_pred             EEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          150 IWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       150 i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      ||.............|..+|+.+..+ .+++|++++.|++..+.|++++......... ..+..+++.+|+| +|.+|.+
T Consensus       287 vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgt  364 (506)
T KOG0289|consen  287 VWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGT  364 (506)
T ss_pred             eeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-CceEEec
Confidence            99998777777788999999999999 7999999999999999999999866655442 2345789999999 9999999


Q ss_pred             EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307          229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ  308 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  308 (339)
                      |..|+. ++|||+.. ...+..+.+|.++|..++|+.+| ++|+++.+|+.|++||++...          ..+.+. ..
T Consensus       365 gt~d~~-vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~----------n~kt~~-l~  430 (506)
T KOG0289|consen  365 GTPDGV-VKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK----------NFKTIQ-LD  430 (506)
T ss_pred             cCCCce-EEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc----------ccceee-cc
Confidence            999998 99999998 44788999999999999999999 899999999999999999977          111112 22


Q ss_pred             ccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          309 SMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ....|.++.|.+.|.+|++++.|=.|++++
T Consensus       431 ~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  431 EKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            334799999999999998887666665543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.7e-30  Score=204.24  Aligned_cols=240  Identities=20%  Similarity=0.239  Sum_probs=203.1

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..|.+.|..+.|-++.     ..|++|+ | .|++|++...+.....++.+..     ++|+.+.|.+ ++.++++++.|
T Consensus       172 d~h~gev~~v~~l~~s-----dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-----g~it~~d~d~-~~~~~iAas~d  240 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNS-----DTLATGGSDRIIKLWNVLGEKSELISTLAGSL-----GNITSIDFDS-DNKHVIAASND  240 (459)
T ss_pred             hccccccceeEEccCc-----chhhhcchhhhhhhhhcccchhhhhhhhhccC-----CCcceeeecC-CCceEEeecCC
Confidence            4689999999999998     7888887 6 9999999888767778888776     8999999997 89999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +.+++|++...+...++.+|.+.|+++.|. ....+++|+.|.+|++||+....+....+..    ..+..|..+   ..
T Consensus       241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~---~~  313 (459)
T KOG0288|consen  241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCS---IS  313 (459)
T ss_pred             Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc----ccccceEec---ce
Confidence            999999999999999999999999999999 4555999999999999999997765555443    456666654   57


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      .+++|..|++ |++||.+. ..+...+..+. .|+++..++++ ..|++++.|.++.+.|+++.+          ...+.
T Consensus       314 ~~~SgH~Dkk-vRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e----------I~~~~  379 (459)
T KOG0288|consen  314 DVISGHFDKK-VRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE----------IRQTF  379 (459)
T ss_pred             eeeecccccc-eEEEeccC-CceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc----------EEEEe
Confidence            8899999999 99999998 56677777754 99999999999 688888999999999999987          11122


Q ss_pred             e--eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 L--CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 ~--~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .  -+......+.+.|||++.|++||+.||.|+||++
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence            1  1123445899999999999999999999999985

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.6e-28  Score=182.94  Aligned_cols=237  Identities=16%  Similarity=0.207  Sum_probs=200.5

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|...|.+++|+.+|     ..||+|+ | ++.+|+++..+........+|.     ..|-.++|+|....+|++++.|
T Consensus        17 ~~~~~~v~Sv~wn~~g-----~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~-----~svdql~w~~~~~d~~atas~d   86 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDG-----TKLASGSFDKTVSVWNLERDRFRKELVYRGHT-----DSVDQLCWDPKHPDLFATASGD   86 (313)
T ss_pred             hhhhhcceEEEEcccC-----ceeeecccCCceEEEEecchhhhhhhcccCCC-----cchhhheeCCCCCcceEEecCC
Confidence            5788999999999999     8999988 6 9999999887644444555666     8899999999899999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      .+|++||++++++...+....+.+ -+.|+ ++++++.++.|..|...|.++.+......    ....+.-++|+ .+++
T Consensus        87 k~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----~~~e~ne~~w~-~~nd  160 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----FKFEVNEISWN-NSND  160 (313)
T ss_pred             ceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc----ccceeeeeeec-CCCC
Confidence            999999999999998886544444 56788 89999999999999999999887443322    23577889999 4777


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      +++.....|. |.|..... -+|+..+++|.....+|.|+|+| ++||+|+.|..+.+||++..-             +.
T Consensus       161 ~Fflt~GlG~-v~ILsyps-Lkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-------------C~  224 (313)
T KOG1407|consen  161 LFFLTNGLGC-VEILSYPS-LKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI-------------CE  224 (313)
T ss_pred             EEEEecCCce-EEEEeccc-cccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh-------------hh
Confidence            7777666677 99998876 67899999999999999999999 799999999999999999876             44


Q ss_pred             -eeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          305 -LCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       305 -~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                       .+..+.-+|..+.||.+|++|++++.|..|-|
T Consensus       225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             eeeccccCceEEEEeccCcceeeccCccceEEe
Confidence             55578889999999999999999999987754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.4e-29  Score=183.85  Aligned_cols=253  Identities=17%  Similarity=0.217  Sum_probs=202.6

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC-cccceeeEeecCCCCceEEEEcC--CCCCCCCC
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS-DFSADNRLIFDHPYTPTNIAFFP--SEETLNPD   89 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~~~   89 (339)
                      ...|.+-|.++...-.   |++||+++    .|++|+|+....... ....  .+ .+|.++|..++|..  .|     .
T Consensus         7 dt~H~D~IHda~lDyy---gkrlATcs----SD~tVkIf~v~~n~~s~ll~--~L-~Gh~GPVwqv~wahPk~G-----~   71 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYY---GKRLATCS----SDGTVKIFEVRNNGQSKLLA--EL-TGHSGPVWKVAWAHPKFG-----T   71 (299)
T ss_pred             hhhhhhhhhHhhhhhh---cceeeeec----CCccEEEEEEcCCCCceeee--Ee-cCCCCCeeEEeecccccC-----c
Confidence            3457788888888888   99999999    899999988776665 2222  33 79999999999987  67     8


Q ss_pred             eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCC-e--eeeeee
Q 040307           90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD-TRRVATCSVDTTCVIWDIDRE-I--LETQLV  163 (339)
Q Consensus        90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~-~--~~~~~~  163 (339)
                      +||+++ | .|.||.-.++++........|.     ..|++++|.|++ +-.|++++.||.|.|.+.+.. .  ..+...
T Consensus        72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~-----~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~  146 (299)
T KOG1332|consen   72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHS-----ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF  146 (299)
T ss_pred             EeeEeecCceEEEEecCCCchhhhhhhhhhc-----ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence            999998 6 9999999999877777778887     999999999853 457889999999999998765 2  233456


Q ss_pred             ccCCceeEEEecC----C-----------cEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCC---C
Q 040307          164 AHDREVYDISWGG----F-----------NVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADP---R  224 (339)
Q Consensus       164 ~~~~~v~~~~~~~----~-----------~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~---~  224 (339)
                      .|.-.|++++|.|    +           ..|++|+.|..|+||+....+-.. ..+.  .|...|+.++|.|..+   .
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~gl~~s  224 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVGLPKS  224 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh--hcchhhhhhhhccccCCCce
Confidence            8999999999983    3           569999999999999998864221 2233  4889999999999543   5


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCce--EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPV--VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +||+++.|++ +.||-.+....+-  ..+......++.+.||+.| .+|+.++.|+.|.+|.-....
T Consensus       225 ~iAS~SqDg~-viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~~G  289 (299)
T KOG1332|consen  225 TIASCSQDGT-VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENVDG  289 (299)
T ss_pred             eeEEecCCCc-EEEEEecCccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCCCC
Confidence            8999999999 9999877532222  2233345689999999999 699999999999999876654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.1e-27  Score=181.59  Aligned_cols=240  Identities=14%  Similarity=0.233  Sum_probs=182.7

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCC-cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDD-RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      ...++.|.+|+|||...    .++++++ | +||+|+++.. .... +....|.     ++|.+++|+. ++..+++|+.
T Consensus        24 ~pP~DsIS~l~FSP~~~----~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~-----~PvL~v~Wsd-dgskVf~g~~   92 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQAD----NLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHD-----GPVLDVCWSD-DGSKVFSGGC   92 (347)
T ss_pred             CCcccchheeEeccccC----ceEEecccCCceEEEEEecCCcccc-hhhhccC-----CCeEEEEEcc-CCceEEeecc
Confidence            45678899999999652    5565665 6 9999999884 3222 3344455     8999999995 9999999999


Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                      |+.+++||+.+++ ..++..|.++|..+.|- .  -..|++|+.|.+|+.||+|.......+...    ..+.++..   
T Consensus        93 Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP----eRvYa~Dv---  164 (347)
T KOG0647|consen   93 DKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP----ERVYAADV---  164 (347)
T ss_pred             CCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc----ceeeehhc---
Confidence            9999999999995 55667899999999998 3  348999999999999999988755554433    46666654   


Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      ...+++++..+.. |.+|+++.+......... -+-.+++|+..++.+ ..+.|+-+|.+.|..+.....          
T Consensus       165 ~~pm~vVata~r~-i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~----------  232 (347)
T KOG0647|consen  165 LYPMAVVATAERH-IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNP----------  232 (347)
T ss_pred             cCceeEEEecCCc-EEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCc----------
Confidence            3357777778887 999999864433222221 234688999999985 669999999999999988640          


Q ss_pred             ccceeeeccc---------ceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          301 VEPELCYQSM---------AEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       301 ~~~~~~~~~~---------~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...+.+.-|.         -.|++|+|+|....|+++|.||++.+|+
T Consensus       233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            0122222222         3588999999888899999999999997

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.2e-27  Score=180.09  Aligned_cols=243  Identities=16%  Similarity=0.240  Sum_probs=195.0

Q ss_pred             eeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           11 VHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        11 ~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      +..|. |..+|+++|.+     +.++|+|+    .|.+|+|||+......-..     ..|.+.|+++.|.+....   .
T Consensus        36 lF~~~aH~~sitavAVs-----~~~~aSGs----sDetI~IYDm~k~~qlg~l-----l~HagsitaL~F~~~~S~---s   98 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS-----GPYVASGS----SDETIHIYDMRKRKQLGIL-----LSHAGSITALKFYPPLSK---S   98 (362)
T ss_pred             cccccccccceeEEEec-----ceeEeccC----CCCcEEEEeccchhhhcce-----eccccceEEEEecCCcch---h
Confidence            44443 67899999987     45999999    7999999887765433332     689999999999998721   2


Q ss_pred             eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307           90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  167 (339)
                      .|++|+ | .|.+|+...-  +++.+++.|+     ..|+.++.+| .+++-++.+.|+.++.||+-+++.-..++ -..
T Consensus        99 hLlS~sdDG~i~iw~~~~W--~~~~slK~H~-----~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~  169 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSW--ELLKSLKAHK-----GQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKN  169 (362)
T ss_pred             heeeecCCCcEEEEEcCCe--EEeeeecccc-----cccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec-cCC
Confidence            677776 4 9999998765  4999999999     8899999999 99999999999999999998887554443 222


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      ..+.+.|+ .|.+|+.++.+ .|-+|.+........+..    +..+.++.|.  ++..|++|+.++. |.+||... ..
T Consensus       170 ~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~l--~~~~L~vG~d~~~-i~~~D~ds-~~  240 (362)
T KOG0294|consen  170 KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN----PKRILCATFL--DGSELLVGGDNEW-ISLKDTDS-DT  240 (362)
T ss_pred             cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc----cccceeeeec--CCceEEEecCCce-EEEeccCC-Cc
Confidence            34559999 68888888766 588999887663333222    2457777775  8899999999998 99999987 78


Q ss_pred             ceEEEecCCCCeeEEEe--ccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          247 PVVVLSKHEGSVNGISW--APLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +...+.+|..+|.++.+  .|++ .+|+|++.||.|++||++...
T Consensus       241 ~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  241 PLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             cceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccc
Confidence            89999999999999985  3556 699999999999999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=8.4e-27  Score=200.27  Aligned_cols=295  Identities=14%  Similarity=0.162  Sum_probs=230.8

Q ss_pred             CCceeeeeecc-CCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307            7 KKPGVHTYMAQ-WPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE   84 (339)
Q Consensus         7 ~~~~~~~~~~~-~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~   84 (339)
                      ..+.+.+|+++ ++|++++|.-|   |. .||+|+    ..|.+.+||++........    .-.|.+.|..+.|.|.. 
T Consensus       233 ~dkil~sFk~d~g~VtslSFrtD---G~p~las~~----~~G~m~~wDLe~kkl~~v~----~nah~~sv~~~~fl~~e-  300 (910)
T KOG1539|consen  233 FDKILMSFKQDWGRVTSLSFRTD---GNPLLASGR----SNGDMAFWDLEKKKLINVT----RNAHYGSVTGATFLPGE-  300 (910)
T ss_pred             cCcEEEEEEccccceeEEEeccC---CCeeEEecc----CCceEEEEEcCCCeeeeee----eccccCCcccceecCCC-
Confidence            46788999996 89999999999   65 566666    6899999888765443332    35788999999999998 


Q ss_pred             CCCCCeEEEeC-C-cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----
Q 040307           85 TLNPDIVATSG-D-SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----  156 (339)
Q Consensus        85 ~~~~~~la~~~-~-~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----  156 (339)
                          .++++++ | .+++|-.++  +..+.++.-.+|.     .|..++.|...++..+.+++.|++.+.+++...    
T Consensus       301 ----pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs-----~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~  371 (910)
T KOG1539|consen  301 ----PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS-----APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ  371 (910)
T ss_pred             ----ceEeeccCCCceeEEEeeCCCCcchheeeccCCC-----CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence                7888877 5 666665554  4345666666777     888899987557888888888887776654320    


Q ss_pred             -------------------------------------------------------------ee-eeeee-----ccCCce
Q 040307          157 -------------------------------------------------------------IL-ETQLV-----AHDREV  169 (339)
Q Consensus       157 -------------------------------------------------------------~~-~~~~~-----~~~~~v  169 (339)
                                                                                   .. ...+.     .....+
T Consensus       372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~  451 (910)
T KOG1539|consen  372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA  451 (910)
T ss_pred             hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence                                                                         00 00010     012456


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT---  245 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---  245 (339)
                      ++++.+ -|++.+.|...|.|-+|++.++-....+...+.|+.+|+.++... .++.+++++.+|- +.+||.....   
T Consensus       452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gi-lkfw~f~~k~l~~  529 (910)
T KOG1539|consen  452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGI-LKFWDFKKKVLKK  529 (910)
T ss_pred             EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcce-EEEEecCCcceee
Confidence            777777 589999999999999999999987777666677999999999984 8889999999998 9999987632   


Q ss_pred             -------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          246 -------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       246 -------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                                                           +.++.+.+|...|++++||||| ++|++++.|++|++||+.+.
T Consensus       530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCc
Confidence                                                 1233456899999999999999 79999999999999999998


Q ss_pred             CCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC-CeEEEEe
Q 040307          289 GYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV-NKLQLLK  338 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-~~v~~w~  338 (339)
                      .             .+-......+.+++.|+|+|.+|+++..| +.|.+|-
T Consensus       609 ~-------------lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  609 T-------------LIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             c-------------eeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            8             55556667889999999999999988877 7899994

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6e-28  Score=186.11  Aligned_cols=239  Identities=20%  Similarity=0.272  Sum_probs=207.5

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|+.++-....     .++.+++ | +.+||.++++.  ++.++.+|.     +.|+++.|++ .+.++++++.|
T Consensus       145 ~GHkDGiW~Vaa~~tq-----pi~gtASADhTA~iWs~Esg~--CL~~Y~GH~-----GSVNsikfh~-s~~L~lTaSGD  211 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQ-----PICGTASADHTARIWSLESGA--CLATYTGHT-----GSVNSIKFHN-SGLLLLTASGD  211 (481)
T ss_pred             cccccceeeehhhcCC-----cceeecccccceeEEeecccc--ceeeecccc-----cceeeEEecc-ccceEEEccCC
Confidence            6899999999987766     6888887 6 99999999998  999999999     9999999998 99999999999


Q ss_pred             CeEEEEEC------CCC----------------------------------eeeeeeeccCCceeEEEec-CCcEEEEEe
Q 040307          146 TTCVIWDI------DRE----------------------------------ILETQLVAHDREVYDISWG-GFNVFASVS  184 (339)
Q Consensus       146 ~~v~i~d~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~  184 (339)
                      ++-.||..      ...                                  .++..+.+|.+.|.+..|- .++.+++++
T Consensus       212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS  291 (481)
T KOG0300|consen  212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS  291 (481)
T ss_pred             cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence            99999972      110                                  2566778899999999998 899999999


Q ss_pred             CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307          185 GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA  264 (339)
Q Consensus       185 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  264 (339)
                      .|.+..+||+.++..... ..+  |+...+.++-+| ..+++++.+.|.+ .++||.+..-..+..+++|...|+++.|.
T Consensus       292 WDRTAnlwDVEtge~v~~-LtG--Hd~ELtHcstHp-tQrLVvTsSrDtT-FRLWDFReaI~sV~VFQGHtdtVTS~vF~  366 (481)
T KOG0300|consen  292 WDRTANLWDVETGEVVNI-LTG--HDSELTHCSTHP-TQRLVVTSSRDTT-FRLWDFREAIQSVAVFQGHTDTVTSVVFN  366 (481)
T ss_pred             ccccceeeeeccCceecc-ccC--cchhccccccCC-cceEEEEeccCce-eEeccchhhcceeeeecccccceeEEEEe
Confidence            999999999999984443 333  778899999998 8899999999999 99999997666788999999999999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE-ecCCeEEEEeC
Q 040307          265 PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI-AFVNKLQLLKV  339 (339)
Q Consensus       265 p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w~v  339 (339)
                      .+.  .+++|+.|.+|++||+++..            .|+.......+++.++.+..++ +++. -.+..||+|++
T Consensus       367 ~dd--~vVSgSDDrTvKvWdLrNMR------------splATIRtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  367 TDD--RVVSGSDDRTVKVWDLRNMR------------SPLATIRTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDL  427 (481)
T ss_pred             cCC--ceeecCCCceEEEeeecccc------------CcceeeecCCccceeEeecCCc-eEEeccCCceEEEEec
Confidence            986  69999999999999999987            5777778888999999998887 5554 56667999985

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=178.86  Aligned_cols=291  Identities=15%  Similarity=0.172  Sum_probs=209.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccc--eeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA--DNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      |.+.|++++|+.|   |++||+++    .|+.|+||+.+.-......  ...++.+   ..+.+.|.||.+    .++++
T Consensus        85 H~~~vt~~~FsSd---GK~lat~~----~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~----s~vv~  150 (420)
T KOG2096|consen   85 HKKEVTDVAFSSD---GKKLATIS----GDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCK----SVVVS  150 (420)
T ss_pred             cCCceeeeEEcCC---CceeEEEe----CCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcc----eEEEE
Confidence            5689999999999   99999999    7999999987643222111  0122233   457889999995    45555


Q ss_pred             eC-C-cEEEEeecCCc---cee-EEEeec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           94 SG-D-SLRLWEIHDDR---TEL-KSLLNS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~---~~~-~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      .- + ++++|.+...+   ... ...... |-.+.|...+..+-... ++.+|++++.|..|.+|+++ |+.+..+....
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq  228 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ  228 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence            43 3 99999876543   000 001111 11222336677777764 88999999999999999998 88888887666


Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-----ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKE-----RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      ..-+..+.+ +|.++++++...-|++|.+--.+     .....+...+|+..|..++|+| +...+++.+.||. ++|||
T Consensus       229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~-wriwd  306 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGK-WRIWD  306 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCc-EEEee
Confidence            667778889 79999999999999999874332     3344455567999999999997 8899999999999 99999


Q ss_pred             cCCCC------CceEEE----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc
Q 040307          241 IRFPT------NPVVVL----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM  310 (339)
Q Consensus       241 ~~~~~------~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (339)
                      +.-..      +.+...    ..-.+.-..++.+|.| ..||.+. ...+++|..+.++           ..+.....|.
T Consensus       307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~-----------~~~~~e~~h~  373 (420)
T KOG2096|consen  307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGK-----------DYPELEDIHS  373 (420)
T ss_pred             ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCc-----------cchhHHHhhc
Confidence            85311      112211    1112233489999999 4666554 4689999999877           2344556789


Q ss_pred             ceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          311 AEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       311 ~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ..|.+++|+++|+ .++.+.|..+++++
T Consensus       374 ~~Is~is~~~~g~-~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  374 TTISSISYSSDGK-YIATCGDRYVRVIR  400 (420)
T ss_pred             CceeeEEecCCCc-EEeeecceeeeeec
Confidence            9999999999997 56777788888764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.8e-27  Score=190.81  Aligned_cols=252  Identities=15%  Similarity=0.173  Sum_probs=204.9

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~~~  109 (339)
                      +.+++++..   ....|.+|.+.........     .--+++|.+++-+|.|     .+|+.|+  +.+++|.+.++.  
T Consensus        50 ~~yllsaq~---~rp~l~vw~i~k~~~~~q~-----~v~Pg~v~al~s~n~G-----~~l~ag~i~g~lYlWelssG~--  114 (476)
T KOG0646|consen   50 NEYLLSAQL---KRPLLHVWEILKKDQVVQY-----IVLPGPVHALASSNLG-----YFLLAGTISGNLYLWELSSGI--  114 (476)
T ss_pred             hhheeeecc---cCccccccccCchhhhhhh-----cccccceeeeecCCCc-----eEEEeecccCcEEEEEecccc--
Confidence            346666664   5668889887765544422     4567899999999999     8888885  399999999998  


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC---------CCeeeeeeeccCCceeEEEecC---C
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID---------REILETQLVAHDREVYDISWGG---F  177 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~---------~~~~~~~~~~~~~~v~~~~~~~---~  177 (339)
                      .+..+..|-     .+|+++.|+- |+.+|++|+.||.|.+|.+.         +.+++..+..|.-+|+++....   .
T Consensus       115 LL~v~~aHY-----Q~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~  188 (476)
T KOG0646|consen  115 LLNVLSAHY-----QSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTN  188 (476)
T ss_pred             HHHHHHhhc-----cceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCcc
Confidence            777788887     8999999995 99999999999999999873         2357888889999999999883   5


Q ss_pred             cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC------------
Q 040307          178 NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT------------  245 (339)
Q Consensus       178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~------------  245 (339)
                      ..+++++.|.++++||+..+.....+...    ..+.+++.+| .+..+++|+.+|. |.+.++....            
T Consensus       189 ~rl~TaS~D~t~k~wdlS~g~LLlti~fp----~si~av~lDp-ae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~  262 (476)
T KOG0646|consen  189 ARLYTASEDRTIKLWDLSLGVLLLTITFP----SSIKAVALDP-AERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRH  262 (476)
T ss_pred             ceEEEecCCceEEEEEeccceeeEEEecC----CcceeEEEcc-cccEEEecCCcce-EEeeehhcCCcccccccccccc
Confidence            79999999999999999999765554443    6899999999 8899999999998 8888775422            


Q ss_pred             ---CceEEEecCCC--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEEEEec
Q 040307          246 ---NPVVVLSKHEG--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINVVRWS  319 (339)
Q Consensus       246 ---~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~  319 (339)
                         ..+..+.+|.+  .|++++.+-|| .+|++|+.||.|+|||+...+             .+.... ..++|+.+.+.
T Consensus       263 ~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q-------------~iRtl~~~kgpVtnL~i~  328 (476)
T KOG0646|consen  263 EENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ-------------CIRTLQTSKGPVTNLQIN  328 (476)
T ss_pred             cccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH-------------HHHHHhhhccccceeEee
Confidence               23455678888  99999999999 699999999999999999877             443333 56788888886


Q ss_pred             CCCCc
Q 040307          320 PLELD  324 (339)
Q Consensus       320 p~~~~  324 (339)
                      |-.+.
T Consensus       329 ~~~~~  333 (476)
T KOG0646|consen  329 PLERG  333 (476)
T ss_pred             ccccc
Confidence            65443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-26  Score=177.51  Aligned_cols=256  Identities=18%  Similarity=0.298  Sum_probs=201.1

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.+-|.++.|.+.   |+++|+++    .|++|+||+.+.+++.+...... ..|.+.|..+.|.+-.-+   +++|++
T Consensus        11 ~h~DlihdVs~D~~---GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfG---qvvA~c   79 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFY---GRRMATCS----SDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFG---QVVATC   79 (361)
T ss_pred             CCcceeeeeeeccc---Cceeeecc----CCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCcccc---ceEEEE
Confidence            46688999999999   99999999    89999999998888888875555 589999999999764322   899999


Q ss_pred             C-C-cEEEEeecCC-------cceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeee-----
Q 040307           95 G-D-SLRLWEIHDD-------RTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILE-----  159 (339)
Q Consensus        95 ~-~-~i~iw~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-----  159 (339)
                      + | ++.||.-...       ++....++...+     ..|+++.|.|. -|-.+|+++.||.++||+....-.+     
T Consensus        80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr-----ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR-----SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             ecCCceeeeeecccccccccceeEEEEEeecCC-----cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence            8 6 9999986322       244556666666     89999999984 4668999999999999987654221     


Q ss_pred             -eeee-------ccCCceeEEEecC----CcEEEEEeCC-----CcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecC
Q 040307          160 -TQLV-------AHDREVYDISWGG----FNVFASVSGD-----CSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       160 -~~~~-------~~~~~v~~~~~~~----~~~l~~~~~d-----~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                       ..++       .+..+..|+.|++    ..+|+.|+.+     +.++||...... +....-+.+.+..+|++++|.|.
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence             1122       3556788999983    5577877765     478999877665 44555555678999999999996


Q ss_pred             CCC---eEEEEeeCCCeEEEEecCCCC-------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307          222 DPR---FMATVGMDSNKVVVLDIRFPT-------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR  279 (339)
Q Consensus       222 ~~~---~l~~~~~d~~~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  279 (339)
                      -|+   +||+++.||  |+||.++...                   +.+..+..|++.|+.+.|+-.| ..|++.+.||.
T Consensus       235 ~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~  311 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGC  311 (361)
T ss_pred             cCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCce
Confidence            654   788899988  9999987311                   2344567899999999999999 69999999999


Q ss_pred             EEEEEecCCC
Q 040307          280 ALIWEVVGPG  289 (339)
Q Consensus       280 v~iwd~~~~~  289 (339)
                      |++|......
T Consensus       312 VRLWkany~n  321 (361)
T KOG2445|consen  312 VRLWKANYNN  321 (361)
T ss_pred             eeehhhhhhh
Confidence            9999877655

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.1e-26  Score=176.59  Aligned_cols=260  Identities=22%  Similarity=0.267  Sum_probs=193.8

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEc-CCCCCEEEE
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWA-GFDTRRVAT  141 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~  141 (339)
                      ..+|.+-|+++.|.+.|     +.+|+|+ | +++|||.+..  .+.+....+.|.     +.|..+.|. |.-|+.+|+
T Consensus         9 ~s~h~DlihdVs~D~~G-----RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~-----~Si~rV~WAhPEfGqvvA~   78 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYG-----RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD-----GSIWRVVWAHPEFGQVVAT   78 (361)
T ss_pred             ccCCcceeeeeeecccC-----ceeeeccCCCcEEEEeccCCCCceEEeeeEEecC-----CcEEEEEecCccccceEEE
Confidence            36889999999999999     7888887 6 9999997544  366777888888     999999996 446889999


Q ss_pred             EeCCCeEEEEECCCC---------eeeeeeeccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcceee-------
Q 040307          142 CSVDTTCVIWDIDRE---------ILETQLVAHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERSTI-------  202 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~-------  202 (339)
                      ++.|+++.||.-...         ....++......|++++|.|   |-.+++++.||.+|||+.-.......       
T Consensus        79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            999999999975211         13445566678899999994   77899999999999999766532111       


Q ss_pred             ---EEeCCCCCCCeEEEEEecC--CCCeEEEEeeC-----CCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCC-
Q 040307          203 ---IYENPVQDCPLLRLEWNKA--DPRFMATVGMD-----SNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYG-  268 (339)
Q Consensus       203 ---~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~d-----~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~-  268 (339)
                         ......+..+..|+.|+|.  ...+||+|+.+     +. ++||......   ..+.++.+|..+|+.++|.|+-. 
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence               1111224567789999973  24578888777     24 8899776544   34567789999999999999732 


Q ss_pred             --CeEEEEeCCCcEEEEEecCCCCCC---CCCCCC--Ccccc--e-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          269 --RRLCSVADDSRALIWEVVGPGYRS---GNGGPS--GDVEP--E-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       269 --~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~--~~~~~--~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                        .+||+++.|| |+||++......-   +...+.  ..++.  + ....|.+.|..+.|+-.|..|.++|.||.||+|+
T Consensus       238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence              4799999999 9999998643100   000111  11111  1 2346899999999999998777899999999997

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.3e-27  Score=197.77  Aligned_cols=300  Identities=15%  Similarity=0.172  Sum_probs=229.3

Q ss_pred             CCCceeeeeeccCCeeEEEeee-cCC-------cccEEEEeeeccccCCeEEEEecCCCCCccccee-------------
Q 040307            6 EKKPGVHTYMAQWPISTVAWSV-RHD-------RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN-------------   64 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp-~~~-------~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~-------------   64 (339)
                      ..++.-.-+.|...|..+.--| +-.       ....+.+++    .|++|++|+++.-...-....             
T Consensus       358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS----sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~  433 (1080)
T KOG1408|consen  358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS----SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE  433 (1080)
T ss_pred             cccceeeeeeccceeeeeccccccccCcccccCCccceeEec----CCCcEEEeecccccccceeecccchhhhhcCccc
Confidence            3345455556777777776666 110       123466777    699999998765211100000             


Q ss_pred             -------------------eEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCC
Q 040307           65 -------------------RLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFS  123 (339)
Q Consensus        65 -------------------~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~  123 (339)
                                         .-..+....+.+++.+|++     +.||+|..  .++||++.+-+  ....++.|.     
T Consensus       434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-----qhLAsGDr~GnlrVy~Lq~l~--~~~~~eAHe-----  501 (1080)
T KOG1408|consen  434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-----QHLASGDRGGNLRVYDLQELE--YTCFMEAHE-----  501 (1080)
T ss_pred             cCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-----ceecccCccCceEEEEehhhh--hhhheeccc-----
Confidence                               0011234568999999999     99999974  99999998876  667788888     


Q ss_pred             CCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCceeEEEec-CC--cEEEEEeCCCcEEEEECCCC
Q 040307          124 SAITSFDWAGF--DTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREVYDISWG-GF--NVFASVSGDCSVRVFDLRDK  197 (339)
Q Consensus       124 ~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~-~~--~~l~~~~~d~~i~i~d~~~~  197 (339)
                      ..|.|+.|+-.  ..++||+++.|..|+|||.... .+++++.+|...|+++.|. .+  ..+++++.|+.|. |+....
T Consensus       502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk  580 (1080)
T KOG1408|consen  502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQK  580 (1080)
T ss_pred             ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhcc
Confidence            99999999842  3578999999999999998554 4677889999999999998 43  6889999998765 444332


Q ss_pred             cceeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---CCCCeeEEEeccCCCCeE
Q 040307          198 ERSTIIYENP---VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---HEGSVNGISWAPLYGRRL  271 (339)
Q Consensus       198 ~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l  271 (339)
                      .....++...   ..+..++.++..| +.+++++++.|.+ |+|||+.. ++..+.+++   |.+....+...|.| .+|
T Consensus       581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrn-irif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg-iY~  656 (1080)
T KOG1408|consen  581 ASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRN-IRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG-IYL  656 (1080)
T ss_pred             ccCceeccccccccccceEEEeeeCC-CcceEEEEecccc-eEEEeccc-cceeeeecccccCCCceEEEEECCCc-cEE
Confidence            2111222111   1235788999998 8899999999999 99999998 666777764   66788899999999 799


Q ss_pred             EEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          272 CSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       272 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++...|.++.++|+..++             +. ..++|...|+.+.|.+|.++|++++.||.|.||++
T Consensus       657 atScsdktl~~~Df~sgE-------------cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  657 ATSCSDKTLCFVDFVSGE-------------CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             EEeecCCceEEEEeccch-------------hhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            999999999999999988             44 67799999999999999999999999999999986

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=8e-27  Score=196.64  Aligned_cols=271  Identities=14%  Similarity=0.144  Sum_probs=214.7

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceE-EEEcCCCCCCCCCeEEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTN-IAFFPSEETLNPDIVAT   93 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~~~~~~la~   93 (339)
                      .|...|..++..+.   . .++.++    .|+++++|.  ...........+ .+|.+-|.. +++.+..+    -.+++
T Consensus        12 gH~~DVr~v~~~~~---~-~i~s~s----Rd~t~~vw~--~~~~~~l~~~~~-~~~~g~i~~~i~y~e~~~----~~l~~   76 (745)
T KOG0301|consen   12 GHKSDVRAVAVTDG---V-CIISGS----RDGTVKVWA--KKGKQYLETHAF-EGPKGFIANSICYAESDK----GRLVV   76 (745)
T ss_pred             cCccchheeEecCC---e-EEeecC----CCCceeeee--ccCcccccceec-ccCcceeeccceeccccC----cceEe
Confidence            36778888887776   4 677777    699999954  444444432233 456666666 77776331    34566


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      |+ | .+.+|......  +..++.+|+     ..|.++.... ++. +++|+.|.++++|..  +++...+.+|...|+.
T Consensus        77 g~~D~~i~v~~~~~~~--P~~~LkgH~-----snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   77 GGMDTTIIVFKLSQAE--PLYTLKGHK-----SNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA  145 (745)
T ss_pred             ecccceEEEEecCCCC--chhhhhccc-----cceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence            65 6 99999998887  999999999     9999998763 444 999999999999986  4566678999999999


Q ss_pred             EEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          172 ISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       172 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      +..-+.+.++||+.|.+|++|.-.+   ....+..  |..-|+.+++-|  +..+++++.||. |++|++.  +..+.++
T Consensus       146 v~~l~e~~~vTgsaDKtIklWk~~~---~l~tf~g--HtD~VRgL~vl~--~~~flScsNDg~-Ir~w~~~--ge~l~~~  215 (745)
T KOG0301|consen  146 VASLPENTYVTGSADKTIKLWKGGT---LLKTFSG--HTDCVRGLAVLD--DSHFLSCSNDGS-IRLWDLD--GEVLLEM  215 (745)
T ss_pred             eeecCCCcEEeccCcceeeeccCCc---hhhhhcc--chhheeeeEEec--CCCeEeecCCce-EEEEecc--Cceeeee
Confidence            9888777999999999999998633   2233444  888999999985  456889999999 9999994  6778999


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc-ceeEEEEecCCCCceEEEec
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM-AEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~  330 (339)
                      .+|..-|++++..+++ ..++++++|++++||+...               ......|. ..|+++.+-++|. ++++|.
T Consensus       216 ~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e---------------~~q~I~lPttsiWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  216 HGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDE---------------CVQVITLPTTSIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             eccceEEEEEEecCCC-CeEEEecCCceEEEeecCc---------------eEEEEecCccceEEEEEeeCCC-EEEecc
Confidence            9999999999977666 4999999999999998873               33344444 4899999999985 999999


Q ss_pred             CCeEEEEe
Q 040307          331 VNKLQLLK  338 (339)
Q Consensus       331 d~~v~~w~  338 (339)
                      ||.||||.
T Consensus       279 DG~VrVfT  286 (745)
T KOG0301|consen  279 DGRVRVFT  286 (745)
T ss_pred             CceEEEEE
Confidence            99999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.2e-28  Score=190.43  Aligned_cols=235  Identities=15%  Similarity=0.279  Sum_probs=197.5

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|.|++=+|..-    ..+|+|+ | .|+|||+...+  +..+++.|.     +.|.+|++.  . ..+++++.|
T Consensus        63 ~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnlsqR~--~~~~f~AH~-----G~V~Gi~v~--~-~~~~tvgdD  128 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNLSQRE--CIRTFKAHE-----GLVRGICVT--Q-TSFFTVGDD  128 (433)
T ss_pred             cccccccchhhcCcchh----hhhhccccCceEEEEehhhhh--hhheeeccc-----CceeeEEec--c-cceEEecCC
Confidence            58999999999999873    5678877 5 99999999887  889999998     999999996  2 788999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      .+|+.|.++. .++.++. ....+..+.-+ .++.++|+|.  .|.|||.....+...+.-+   ...+.++.|+|....
T Consensus       129 KtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG---~Dti~svkfNpvETs  201 (433)
T KOG0268|consen  129 KTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG---ADSISSVKFNPVETS  201 (433)
T ss_pred             cceeeeeccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecC---CCceeEEecCCCcch
Confidence            9999999865 4667764 34567777777 6788998875  5899999877655554433   467999999998888


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      +|++++.|++ |.|||++. ..|+..+.. ...-+.|+|+|.+ ..++++++|.+++.||++...            .|+
T Consensus       202 ILas~~sDrs-IvLyD~R~-~~Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~------------~p~  265 (433)
T KOG0268|consen  202 ILASCASDRS-IVLYDLRQ-ASPLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS------------RPL  265 (433)
T ss_pred             heeeeccCCc-eEEEeccc-CCccceeee-eccccceecCccc-cceeeccccccceehhhhhhc------------ccc
Confidence            9999999999 99999998 667776654 4566899999966 689999999999999999988            454


Q ss_pred             -eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 -LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 -~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                       ...+|...|.+++|||.|+.+++++.|.+||||.+
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence             56689999999999999999999999999999974

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.5e-27  Score=189.09  Aligned_cols=255  Identities=16%  Similarity=0.265  Sum_probs=201.4

Q ss_pred             cCCeeEEEeeec----CCcccEEEEeeeccccCCeEEEEecCCCCCccccee----------------eEeecCCCCceE
Q 040307           17 QWPISTVAWSVR----HDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN----------------RLIFDHPYTPTN   76 (339)
Q Consensus        17 ~~~v~~i~~sp~----~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~~v~~   76 (339)
                      +....|++|...    ...|+++|+|+    .+..|.|||++.-........                ....+|+..|..
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGt----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~  248 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGT----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA  248 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEec----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH
Confidence            456678888653    23588999999    599999999886443222100                001268999999


Q ss_pred             EEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307           77 IAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID  154 (339)
Q Consensus        77 l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~  154 (339)
                      |+|+..-+    .+||+|+ | +|++||+++++  +..++..|.     ..|.++.|+|..+..|++|+.|++|.+.|.+
T Consensus       249 Ls~n~~~~----nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~-----k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  249 LSWNRNFR----NVLASGSADKTVKLWDVDTGK--PKSSITHHG-----KKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             HHhccccc----eeEEecCCCceEEEEEcCCCC--cceehhhcC-----CceeEEEecCCCceEEEeccccceEEeeecc
Confidence            99999886    8999998 6 99999999998  888888887     8999999999999999999999999999998


Q ss_pred             CCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          155 REILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      ........-...+.|-.++|.  ..+.++++..||+|+-+|+|....+......  |..+|.++++++....++++++.+
T Consensus       318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeecccc
Confidence            543332222356789999999  4778888999999999999999766555555  889999999999899999999999


Q ss_pred             CCeEEEEecCCCCCc-eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          233 SNKVVVLDIRFPTNP-VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +. +++|++...... +......-+...|.++.|+-...++.|+..+.++|||+.+..
T Consensus       396 ~~-Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  396 KV-VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ce-EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            99 999998753221 111111123467888999987789999999999999998876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=194.55  Aligned_cols=249  Identities=19%  Similarity=0.267  Sum_probs=191.2

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc---------cceeeEeecCCCCceEEEEcCCCCCCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF---------SADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      ...|.+++|+|.   +..|++.+    .....+|+|-+  +.++         ........+|...++|.+|+|..+   
T Consensus       214 ~h~i~sl~ys~T---g~~iLvvs----g~aqakl~DRd--G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k---  281 (641)
T KOG0772|consen  214 THQINSLQYSVT---GDQILVVS----GSAQAKLLDRD--GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK---  281 (641)
T ss_pred             ccccceeeecCC---CCeEEEEe----cCcceeEEccC--CceeeeeeccchhhhhhhccCCceeeeeccccccCcc---
Confidence            468999999999   77666666    47888895433  3222         111122458999999999999986   


Q ss_pred             CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeee
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQL  162 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~  162 (339)
                       ..+++++ | +++||++++.+ .....++.....+..-+++.++|+| ++++||+|..||.|.+|+.....   ....-
T Consensus       282 -~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk  358 (641)
T KOG0772|consen  282 -EEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK  358 (641)
T ss_pred             -cceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEee
Confidence             6666666 5 99999998865 2444444433334447899999998 99999999999999999975432   22223


Q ss_pred             eccCC--ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC------C
Q 040307          163 VAHDR--EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD------S  233 (339)
Q Consensus       163 ~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------~  233 (339)
                      .+|..  .|+||.|+ ++++|++-+.|+++++||+|..+.+......-....+-+.++|+| +.++|++|+.-      +
T Consensus       359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g  437 (641)
T KOG0772|consen  359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAG  437 (641)
T ss_pred             eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCc
Confidence            57876  89999999 999999999999999999999887766555434445678899999 88999998653      4


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      . +.+||..+ -..+.++......|..+.|+|.- +.|..|+.||.+++|=
T Consensus       438 ~-L~f~d~~t-~d~v~ki~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  438 T-LFFFDRMT-LDTVYKIDISTASVVRCLWHPKL-NQIFAGSGDGTAHVYY  485 (641)
T ss_pred             e-EEEEeccc-eeeEEEecCCCceEEEEeecchh-hheeeecCCCceEEEE
Confidence            4 99999877 45567777778899999999998 5888888899999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1e-26  Score=201.91  Aligned_cols=236  Identities=17%  Similarity=0.281  Sum_probs=199.4

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.+.|.++++...   +.+|++|+    .|.++++|+..  ++....  .+ .+|...|.++...+       .++++|
T Consensus       247 GH~g~V~~l~~~~~---~~~lvsgS----~D~t~rvWd~~--sg~C~~--~l-~gh~stv~~~~~~~-------~~~~sg  307 (537)
T KOG0274|consen  247 GHFGGVWGLAFPSG---GDKLVSGS----TDKTERVWDCS--TGECTH--SL-QGHTSSVRCLTIDP-------FLLVSG  307 (537)
T ss_pred             CCCCCceeEEEecC---CCEEEEEe----cCCcEEeEecC--CCcEEE--Ee-cCCCceEEEEEccC-------ceEeec
Confidence            47899999999987   78999999    79999997744  445554  44 68999999998766       466776


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | +|++|+++++.  .+..+.+|.     .+|+++..+   +.++++|+.|++|++||+.+++++..+.+|...|.++
T Consensus       308 s~D~tVkVW~v~n~~--~l~l~~~h~-----~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl  377 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNGA--CLNLLRGHT-----GPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL  377 (537)
T ss_pred             cCCceEEEEeccCcc--eEEEecccc-----ccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence            6 6 99999999887  888888888     999999985   6899999999999999999999999999999999999


Q ss_pred             EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      .+...+.+++|+.|+.|++||+++.......+..  |..-+..+.+   .+++|++++.|+. |++||... ++.+..+.
T Consensus       378 ~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~--h~~~v~~l~~---~~~~Lvs~~aD~~-Ik~WD~~~-~~~~~~~~  450 (537)
T KOG0274|consen  378 IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG--HTSLVSSLLL---RDNFLVSSSADGT-IKLWDAEE-GECLRTLE  450 (537)
T ss_pred             EecCcceEEeeeeccceEeecCCchhhhhhhhcC--Cccccccccc---ccceeEecccccc-EEEeeccc-Cceeeeec
Confidence            8873399999999999999999998323333333  5666666665   5689999999999 99999987 77788888


Q ss_pred             c-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          253 K-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       253 ~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      + |...|..+++.  . ..+++++.||.+++||++...
T Consensus       451 ~~~~~~v~~l~~~--~-~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  451 GRHVGGVSALALG--K-EEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             cCCcccEEEeecC--c-ceEEEEecCCeeEEEecccCc
Confidence            8 67889888887  2 378899999999999999987

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.96  E-value=2.6e-27  Score=183.13  Aligned_cols=297  Identities=13%  Similarity=0.148  Sum_probs=221.0

Q ss_pred             ccCCeeEEEeeecC--CcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           16 AQWPISTVAWSVRH--DRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        16 ~~~~v~~i~~sp~~--~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      +..+|+.++|++-.  +..+.+|+++     .+.+.||+...+.............|......++|+-+....+| ++|.
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG-----~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p-~la~  110 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVG-----GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP-FLAA  110 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeC-----CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe-eEEe
Confidence            45789999999632  2356788877     78999999887764333222223357888999999887643344 5555


Q ss_pred             eCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCCc
Q 040307           94 SGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDRE  168 (339)
Q Consensus        94 ~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~  168 (339)
                      +|-  .|+|.|+...+  +...+.+|.     ..|+.+.++|.+.+++++++.|..|++|++++..++..+   .+|.+.
T Consensus       111 ~G~~GvIrVid~~~~~--~~~~~~ghG-----~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde  183 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQ--CSKNYRGHG-----GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE  183 (385)
T ss_pred             ecceeEEEEEecchhh--hccceeccC-----ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence            553  99999999987  888888988     999999999988899999999999999999999988887   579999


Q ss_pred             eeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-------------------------eCCCCCCCeEEEEEecCC
Q 040307          169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-------------------------ENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~p~~  222 (339)
                      |.++.|+ ++.+|++++.|.+|++|++...+....+.                         ....|...|-++.|-   
T Consensus       184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---  260 (385)
T KOG1034|consen  184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---  260 (385)
T ss_pred             EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---
Confidence            9999999 89999999999999999998543111100                         112244555566663   


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCc-------------eEEEecCCCCeeEE--EeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNP-------------VVVLSKHEGSVNGI--SWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~-------------~~~~~~~~~~v~~~--~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      |+++++-+-++. |..|......+.             +.++......++-+  +|.|-+ ++||.|...|.|.+||++.
T Consensus       261 gd~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  261 GDFILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDN  338 (385)
T ss_pred             hhheeecccCce-EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCC
Confidence            588888888887 999987322211             22233333445544  566777 6999999999999999999


Q ss_pred             CCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          288 PGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .+. +       ....+........|.+.+|+.|+..|++.+.|++|.-|+
T Consensus       339 ~ep-~-------~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  339 NEP-P-------KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             CCC-c-------cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            870 0       000111223356799999999999999999999998886

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1e-26  Score=193.03  Aligned_cols=301  Identities=13%  Similarity=0.128  Sum_probs=222.2

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      ..+.--.|.+.|.+|...|.   |..||+|+    .||+|+||.+.  ++.+..    .....+.|.|++|+|....   
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~---G~wlasGs----dDGtvriWEi~--TgRcvr----~~~~d~~I~~vaw~P~~~~---  455 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPS---GEWLASGS----DDGTVRIWEIA--TGRCVR----TVQFDSEIRSVAWNPLSDL---  455 (733)
T ss_pred             eeeeEeccCCeEEEEEecCC---cceeeecC----CCCcEEEEEee--cceEEE----EEeecceeEEEEecCCCCc---
Confidence            33444568899999999999   99999999    89999996654  455554    2445678999999999853   


Q ss_pred             CeEEEeCC-cEEEEeecCCc-------ceeE--------------EEeec---------CCCccCCCCEEEEEEcCCCCC
Q 040307           89 DIVATSGD-SLRLWEIHDDR-------TELK--------------SLLNS---------NKTSEFSSAITSFDWAGFDTR  137 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~-------~~~~--------------~~~~~---------~~~~~~~~~i~~~~~~~~~~~  137 (339)
                      .+||++.+ .+.|-+..-+.       ..++              ...+.         +....+...|..+.|+. .|.
T Consensus       456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGD  534 (733)
T KOG0650|consen  456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGD  534 (733)
T ss_pred             eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCc
Confidence            56666654 55444432210       0000              00000         00011237899999996 999


Q ss_pred             EEEEEeCC---CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307          138 RVATCSVD---TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL  213 (339)
Q Consensus       138 ~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  213 (339)
                      +|++...+   ..|.|+++...+....+....+.|.++.|+| ..+|++++ ...|++||+..+.....+..+   ...|
T Consensus       535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg---~kwi  610 (733)
T KOG0650|consen  535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG---SKWI  610 (733)
T ss_pred             eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC---Ceee
Confidence            99997653   5789999987776666666677899999995 44555554 468999999987655544443   4578


Q ss_pred             EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC
Q 040307          214 LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG  293 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~  293 (339)
                      .+++.+| .|..|+.|+.|+. +..||+....+|.+++..|...+++|+|++.-+ ++++|+.||.+.|+.-.-...   
T Consensus       611 S~msihp-~GDnli~gs~d~k-~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~D---  684 (733)
T KOG0650|consen  611 SSMSIHP-NGDNLILGSYDKK-MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYND---  684 (733)
T ss_pred             eeeeecC-CCCeEEEecCCCe-eEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehh---
Confidence            9999998 8999999999999 999999988899999999999999999999995 999999999999997554331   


Q ss_pred             CCCCCCcccce-eeecccc----eeEEEEecCCCCceEEEecCCeEEEE
Q 040307          294 NGGPSGDVEPE-LCYQSMA----EINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       294 ~~~~~~~~~~~-~~~~~~~----~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                       ......+.|+ .+.+|..    .|.++.|||..+.|++++.||+|++|
T Consensus       685 -l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  685 -LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             -hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence             0001112233 4446644    49999999999999999999999998

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=5e-28  Score=187.11  Aligned_cols=240  Identities=15%  Similarity=0.211  Sum_probs=204.3

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +.++|.|+.||.|   ...||+|+    .||.|++|.+..  +.+..  .+...|...|+|+.|+.|+     ..+.+++
T Consensus       262 md~aVlci~FSRD---sEMlAsGs----qDGkIKvWri~t--G~ClR--rFdrAHtkGvt~l~FSrD~-----SqiLS~s  325 (508)
T KOG0275|consen  262 MDDAVLCISFSRD---SEMLASGS----QDGKIKVWRIET--GQCLR--RFDRAHTKGVTCLSFSRDN-----SQILSAS  325 (508)
T ss_pred             cccceEEEeeccc---HHHhhccC----cCCcEEEEEEec--chHHH--HhhhhhccCeeEEEEccCc-----chhhccc
Confidence            4689999999999   99999999    899999977654  44444  4456899999999999999     4555555


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--cCCceeE
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA--HDREVYD  171 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~v~~  171 (339)
                       | +++|--+..++  ++..+++|.     +-|+...|.+ +|+.+++++.||+|++|+..+.+++.+++.  ...+|.+
T Consensus       326 fD~tvRiHGlKSGK--~LKEfrGHs-----Syvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vns  397 (508)
T KOG0275|consen  326 FDQTVRIHGLKSGK--CLKEFRGHS-----SYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNS  397 (508)
T ss_pred             ccceEEEeccccch--hHHHhcCcc-----ccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCccccee
Confidence             7 99999999998  889999998     8999999997 999999999999999999999999988863  3446777


Q ss_pred             EEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          172 ISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       172 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      +-.-  +...++.|...+++.+-++...- ...+..+....+...+++.+| .|..+++.+.|+. ++.|.+.+ ++...
T Consensus       398 v~~~PKnpeh~iVCNrsntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSp-kGewiYcigED~v-lYCF~~~s-G~LE~  473 (508)
T KOG0275|consen  398 VILLPKNPEHFIVCNRSNTVYIMNMQGQV-VRSFSSGKREGGDFINAILSP-KGEWIYCIGEDGV-LYCFSVLS-GKLER  473 (508)
T ss_pred             EEEcCCCCceEEEEcCCCeEEEEeccceE-EeeeccCCccCCceEEEEecC-CCcEEEEEccCcE-EEEEEeec-Cceee
Confidence            7666  47789999999999999987643 334444444567788899998 9999999999998 99999987 67788


Q ss_pred             EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ++..|...|..++-+|.. ++||+-++||.+++|.
T Consensus       474 tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  474 TLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKLWK  507 (508)
T ss_pred             eeecccccccccccCccc-chhhhhcccchhhhcC
Confidence            999999999999999998 6999999999999995

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.5e-27  Score=203.12  Aligned_cols=198  Identities=17%  Similarity=0.238  Sum_probs=164.5

Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC--------------------------------C-------------
Q 040307          122 FSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR--------------------------------E-------------  156 (339)
Q Consensus       122 ~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~--------------------------------~-------------  156 (339)
                      |.++|.++.|++ +|++||+|+.|+.|+||.+..                                .             
T Consensus       266 h~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  266 HKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             cCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            449999999997 999999999999999998754                                0             


Q ss_pred             ---------------eeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          157 ---------------ILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       157 ---------------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                                     +++..+.+|.+.|.++.|+.+++|++++.|.+|+||++....++..+.    |...|+|++|+|.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe----cCCeeEEEEeccc
Confidence                           356667789999999999988999999999999999999887655543    5689999999999


Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      +.+|+++|+.|+. ++||++.. .+ +.....-..-|++++|.|+| +..+.|+.+|.+++|++...+-          .
T Consensus       421 DDryFiSGSLD~K-vRiWsI~d-~~-Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~----------~  486 (712)
T KOG0283|consen  421 DDRYFISGSLDGK-VRLWSISD-KK-VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKL----------V  486 (712)
T ss_pred             CCCcEeecccccc-eEEeecCc-Ce-eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeE----------E
Confidence            9999999999999 99999975 33 33333334789999999999 6999999999999999998770          0


Q ss_pred             cceeee-------cccceeEEEEecCCCCc-eEEEecCCeEEEEeC
Q 040307          302 EPELCY-------QSMAEINVVRWSPLELD-WIAIAFVNKLQLLKV  339 (339)
Q Consensus       302 ~~~~~~-------~~~~~i~~~~~~p~~~~-l~~~~~d~~v~~w~v  339 (339)
                      ....+.       .|. .|+.+.|.|.... ++.++.|..|||++.
T Consensus       487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            001111       133 7999999997765 888999999999974

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=2.1e-26  Score=185.34  Aligned_cols=291  Identities=16%  Similarity=0.210  Sum_probs=216.6

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +..+|++++|+|..+ .+++|+|.    ..|.|-+|++..+.........+ ..|..+|.++.|+|....   ++++++.
T Consensus       185 ~~~Rit~l~fHPt~~-~~lva~Gd----K~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s---~i~ssSy  255 (498)
T KOG4328|consen  185 TDRRITSLAFHPTEN-RKLVAVGD----KGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTS---QIYSSSY  255 (498)
T ss_pred             cccceEEEEecccCc-ceEEEEcc----CCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChh---heeeecc
Confidence            568999999999822 36888888    89999999996333322221123 689999999999998753   5666666


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeccCCceeEEE
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQLVAHDREVYDIS  173 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~v~~~~  173 (339)
                      | +|++-|++....+.+..+....     ..+..+.|+. +...++.+..-|...+||++++.. ...+.-|...|.+|+
T Consensus       256 DGtiR~~D~~~~i~e~v~s~~~d~-----~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLSLDTDN-----IWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             CceeeeeeecchhhHHHhhcCccc-----eeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence            7 9999999998755555554333     5677888986 777778888888999999998764 556677888999999


Q ss_pred             ec--CCcEEEEEeCCCcEEEEECCCCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC---CCCCc
Q 040307          174 WG--GFNVFASVSGDCSVRVFDLRDKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR---FPTNP  247 (339)
Q Consensus       174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~---~~~~~  247 (339)
                      ++  ...+|++++.|++.+|||+|....... +.....|...|.++.|+|.++. |++.+.|.. |+|||..   ....+
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~-IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNE-IRVFDSSCISAKDEP  407 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCc-eEEeecccccccCCc
Confidence            99  478999999999999999998654332 3333457889999999996666 888899998 9999984   32444


Q ss_pred             eEEEecCC----C--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-ec-ccceeEE-EEe
Q 040307          248 VVVLSKHE----G--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQ-SMAEINV-VRW  318 (339)
Q Consensus       248 ~~~~~~~~----~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~-~~~  318 (339)
                      ..++. |.    .  ......|.|+. .++++|-.-..|-|+|-..++             .+.. .. ....|.+ ..|
T Consensus       408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q-------------~v~el~~P~~~tI~~vn~~  472 (498)
T KOG4328|consen  408 LGTIP-HNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQ-------------MVCELHDPESSTIPSVNEF  472 (498)
T ss_pred             cceee-ccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCE-------------EeeeccCccccccccceee
Confidence            44443 32    2  23467899998 699999998899999988776             2222 11 1223444 689


Q ss_pred             cCCCCceEEEe-cCCeEEEEe
Q 040307          319 SPLELDWIAIA-FVNKLQLLK  338 (339)
Q Consensus       319 ~p~~~~l~~~~-~d~~v~~w~  338 (339)
                      +|.+..+++++ ..|.|.||-
T Consensus       473 HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  473 HPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             cccccceeccCCccceEEEEe
Confidence            99987677665 678888883

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.2e-25  Score=195.29  Aligned_cols=268  Identities=17%  Similarity=0.219  Sum_probs=207.5

Q ss_pred             eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE
Q 040307           12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV   91 (339)
Q Consensus        12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l   91 (339)
                      .++.|..+-+.|+|.|+   |.+|.+++    .||.|++|+-.....+...   + ..+...|.+++-..       ..|
T Consensus         8 lRyaht~G~t~i~~d~~---gefi~tcg----sdg~ir~~~~~sd~e~P~t---i-~~~g~~v~~ia~~s-------~~f   69 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPD---GEFICTCG----SDGDIRKWKTNSDEEEPET---I-DISGELVSSIACYS-------NHF   69 (933)
T ss_pred             chhhccCceEEEEEcCC---CCEEEEec----CCCceEEeecCCcccCCch---h-hccCceeEEEeecc-------cce
Confidence            35678889999999999   99998888    7999999876655433332   1 12777777777543       456


Q ss_pred             EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce
Q 040307           92 ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV  169 (339)
Q Consensus        92 a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v  169 (339)
                      ++|+ + +|.+|.+..++.  -..+...+     -++++++|+- +|+++|.|+.|-.|++.++.+......+.+|.++|
T Consensus        70 ~~~s~~~tv~~y~fps~~~--~~iL~Rft-----lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV  141 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEE--DTILARFT-----LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV  141 (933)
T ss_pred             EEeeccceEEEeeCCCCCc--cceeeeee-----ccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence            6666 4 999999998873  22233323     6899999995 99999999999999999999998899999999999


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-----CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-----VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      .++.|+ .+++||+.+.||.|++||+.++.....+....     .....+..++|+| ++..+++...++. |++|+...
T Consensus       142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~-Vkvy~r~~  219 (933)
T KOG1274|consen  142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNT-VKVYSRKG  219 (933)
T ss_pred             eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCe-EEEEccCC
Confidence            999999 79999999999999999999886443332111     1134567899999 5555566677777 99999876


Q ss_pred             CCCceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          244 PTNPVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       244 ~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                       ..+...+..  +...+..++|+|.| ++||+++.||.|.|||.++..             .   ......|++++|.|+
T Consensus       220 -we~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~-------------~---~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  220 -WELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE-------------R---HEFKRAVCCEAWKPN  281 (933)
T ss_pred             -ceeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch-------------h---ccccceeEEEecCCC
Confidence             444555543  34458999999999 799999999999999999855             2   233567999999999


Q ss_pred             CCce
Q 040307          322 ELDW  325 (339)
Q Consensus       322 ~~~l  325 (339)
                      ...+
T Consensus       282 ~n~i  285 (933)
T KOG1274|consen  282 ANAI  285 (933)
T ss_pred             CCee
Confidence            8743

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=181.94  Aligned_cols=249  Identities=20%  Similarity=0.329  Sum_probs=183.8

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC------------CCcccceeeEeecCCCCceEEEEcC
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE------------TSDFSADNRLIFDHPYTPTNIAFFP   81 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~~~~~~~v~~l~~~~   81 (339)
                      ..|.+.+..+.-++-.+ ..+.|+=+    ..|.|+||++...            ..+.....++ .+|...=+.|.|||
T Consensus       148 i~h~g~~NRvr~~~~~~-~~~~asws----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGN-EVLCASWS----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSP  221 (440)
T ss_pred             cccccccceeeecccCC-cceeeeec----ccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccc
Confidence            34556666666666610 33444444    6899999986532            1112221122 47888889999999


Q ss_pred             CCCCCCCCeEEEeCC--cEEEEeecCCccee-EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-
Q 040307           82 SEETLNPDIVATSGD--SLRLWEIHDDRTEL-KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-  157 (339)
Q Consensus        82 ~~~~~~~~~la~~~~--~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-  157 (339)
                      -..    ..|++|.-  .|++|...++.+.. ...+.+|+     ..|-.++|||.....|++|+.||+|+|||++.+. 
T Consensus       222 ~~~----g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-----~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  222 IKT----GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-----KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             ccc----cccccCccccceEeeeeccCceeecCccccccc-----cchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence            653    45666653  99999999876432 23455677     8999999999888999999999999999999883 


Q ss_pred             --eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307          158 --LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN  234 (339)
Q Consensus       158 --~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~  234 (339)
                        ++.. ++|.+.|+-|.|+ .-.+|++|+.||+++|||+|+-+.-..+.....|+.+|+++.|+|.+...|++++.|..
T Consensus       293 ~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q  371 (440)
T KOG0302|consen  293 KAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ  371 (440)
T ss_pred             cceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence              3333 7899999999999 55599999999999999999876433332333489999999999999999999999998


Q ss_pred             eEEEEecCCCCC---------------ceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCc
Q 040307          235 KVVVLDIRFPTN---------------PVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSR  279 (339)
Q Consensus       235 ~i~i~d~~~~~~---------------~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~  279 (339)
                       |.+||+.....               |.+.+-.|  ...+..+.|+++-+.+|++.+.||-
T Consensus       372 -itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  372 -ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             -EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence             99999964221               11222234  4578899999998889999998874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.1e-25  Score=171.96  Aligned_cols=290  Identities=16%  Similarity=0.246  Sum_probs=216.8

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc----ccce------eeEeecCCCCceEEEEcCCCC
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD----FSAD------NRLIFDHPYTPTNIAFFPSEE   84 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~----~~~~------~~~~~~~~~~v~~l~~~~~~~   84 (339)
                      .|.+.|.++...|.  .++++++|+    .||.|.+||++..+..    +...      ...+.+|.-.|..+.|-|-..
T Consensus        41 ~HgGsvNsL~id~t--egrymlSGg----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLT--EGRYMLSGG----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             cCCCccceeeeccc--cceEEeecC----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            46678888888876  699999999    7999999998754411    1110      011346788899999999874


Q ss_pred             CCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCeeee
Q 040307           85 TLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        85 ~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                          -++.+++ | ++++||.++-+  ....|+-.      +.|..-+|+|-.  ..+||+|..+-.|++.|+.+|....
T Consensus       115 ----GmFtssSFDhtlKVWDtnTlQ--~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  115 ----GMFTSSSFDHTLKVWDTNTLQ--EAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             ----ceeecccccceEEEeecccce--eeEEeecC------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence                6888877 7 99999999876  34444322      578888888742  3578889999999999999999999


Q ss_pred             eeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCc------------ceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          161 QLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKE------------RSTIIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       161 ~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                      .+.+|.+.|.++.|+|  .-.|++|+.||.|++||+|...            .+......+.|.+.+..++|.. ++.++
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l  261 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYL  261 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhh
Confidence            9999999999999994  5578999999999999998652            2222233456778999999996 99999


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEe--cCCC---CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLS--KHEG---SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~--~~~~---~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      ++++.|.. +++|+..++...+..+.  .|+.   .-..+. +-+.+ .++---.++.+.++++-.+.            
T Consensus       262 ~~~gtd~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~lall~~~sgs------------  326 (397)
T KOG4283|consen  262 ASCGTDDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSLALLNLLEGS------------  326 (397)
T ss_pred             hhccCccc-eEEeecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeEEEEEccCce------------
Confidence            99999999 99999987554333221  1111   111133 33332 45555566889998888877            


Q ss_pred             cceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .......|...|.+..+-|+-+...++..|+.+..|-
T Consensus       327 ~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  327 FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             EEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence            2335567788899999999988899999999988874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=7.5e-27  Score=195.36  Aligned_cols=115  Identities=17%  Similarity=0.270  Sum_probs=103.4

Q ss_pred             CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ..|+.+.|+|.+...||+++.|+. |++|.+...+      .|...+..|...|+++.|+|-...+|++++.|.+|++||
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            467888999999999999999998 9999987643      466788899999999999998767999999999999999


Q ss_pred             ecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          285 VVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      +.+..            ....+.+|.+.|.+++|||+|+.++++|.||+|++|+
T Consensus       707 l~~~~------------~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  707 LANAK------------LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             hhhhh------------hhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            99988            3457789999999999999999999999999999985

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3.9e-26  Score=201.67  Aligned_cols=254  Identities=17%  Similarity=0.230  Sum_probs=198.1

Q ss_pred             ceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC--CC------------cccceeeEeecCCCC
Q 040307            9 PGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE--TS------------DFSADNRLIFDHPYT   73 (339)
Q Consensus         9 ~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~--~~------------~~~~~~~~~~~~~~~   73 (339)
                      +.+.+. .|...|.|+.|+||   |++||+|+    .|..|.||.....  +.            .+.....+ .+|...
T Consensus        60 k~l~~m~~h~~sv~CVR~S~d---G~~lAsGS----DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~D  131 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPD---GSYLASGS----DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSD  131 (942)
T ss_pred             hhheeeccccCceeEEEECCC---CCeEeecc----CcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCc
Confidence            334444 47889999999999   99999999    8999999988731  11            11121233 589999


Q ss_pred             ceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           74 PTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      |..++|+|++     .+||+++ | +|.||+..+.+  ....+++|.     +.|..+.|.| -|++||+-+.|++|+||
T Consensus       132 V~Dv~Wsp~~-----~~lvS~s~DnsViiwn~~tF~--~~~vl~~H~-----s~VKGvs~DP-~Gky~ASqsdDrtikvw  198 (942)
T KOG0973|consen  132 VLDVNWSPDD-----SLLVSVSLDNSVIIWNAKTFE--LLKVLRGHQ-----SLVKGVSWDP-IGKYFASQSDDRTLKVW  198 (942)
T ss_pred             cceeccCCCc-----cEEEEecccceEEEEccccce--eeeeeeccc-----ccccceEECC-ccCeeeeecCCceEEEE
Confidence            9999999999     8999999 6 99999999885  999999998     9999999999 99999999999999999


Q ss_pred             ECCCCeeeeeeeccC------CceeEEEec-CCcEEEEEeC----CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307          152 DIDREILETQLVAHD------REVYDISWG-GFNVFASVSG----DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       152 d~~~~~~~~~~~~~~------~~v~~~~~~-~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p  220 (339)
                      ++.+-...+.+..+-      .....+.|+ +|.+|++...    -..+.|.+-.+.+. ...+.+  |..++.+++|+|
T Consensus       199 rt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~-~~~LvG--H~~p~evvrFnP  275 (942)
T KOG0973|consen  199 RTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV-DKDLVG--HSAPVEVVRFNP  275 (942)
T ss_pred             EcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee-eeeeec--CCCceEEEEeCh
Confidence            977655555554332      346789999 7999987743    34577776544442 223333  778999999998


Q ss_pred             C-----C-------CC----eEEEEeeCCCeEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          221 A-----D-------PR----FMATVGMDSNKVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       221 ~-----~-------~~----~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      .     .       .+    .+|+|+.|+. |.||.... .+|+.. ..-....|..++|+||| ..|+.+|.||+|.+.
T Consensus       276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG-~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDG-FSLFACSLDGTVALI  352 (942)
T ss_pred             HHhccccccCCccCCCcceEEEEEecCCcc-EEEEecCC-CCchhhhhhhhcCceeeeeEcCCC-CeEEEEecCCeEEEE
Confidence            1     1       11    6889999999 99999866 444433 33346789999999999 799999999999999


Q ss_pred             EecCCC
Q 040307          284 EVVGPG  289 (339)
Q Consensus       284 d~~~~~  289 (339)
                      .++..+
T Consensus       353 ~Fee~E  358 (942)
T KOG0973|consen  353 HFEEKE  358 (942)
T ss_pred             EcchHH
Confidence            998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-27  Score=196.64  Aligned_cols=240  Identities=15%  Similarity=0.193  Sum_probs=198.2

Q ss_pred             CCCCce---EEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce----eEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307           70 HPYTPT---NIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE----LKSLLNSNKTSEFSSAITSFDWAGFDTRRVA  140 (339)
Q Consensus        70 ~~~~v~---~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  140 (339)
                      |...|.   .+..+..+.    ++|.+|| | .|++|++......    ....++.|.     .-|+.+...- +++.|+
T Consensus        20 n~~~v~~~~~Lq~da~~~----ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-----DWVNDiiL~~-~~~tlI   89 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNG----RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-----DWVNDIILCG-NGKTLI   89 (735)
T ss_pred             ccccccchhhccccCCCC----ceEEecCCCceEEEeccccccCCcccchhhhhhhhH-----hHHhhHHhhc-CCCceE
Confidence            344454   555555543    7788888 5 9999998765421    356677777     8899998885 889999


Q ss_pred             EEeCCCeEEEEECCCC--eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcc--------eeeEEeCCC
Q 040307          141 TCSVDTTCVIWDIDRE--ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKER--------STIIYENPV  208 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~  208 (339)
                      +++.|-+|++|+...+  -++.++..|.+.|.|+++-  +..++|+||.|+.|.+||+..+..        ........+
T Consensus        90 S~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG  169 (735)
T KOG0308|consen   90 SASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG  169 (735)
T ss_pred             EecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence            9999999999999877  4778889999999999994  788999999999999999997632        111111124


Q ss_pred             CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      +...+++++.++ .+..+++|+.++. +++||.+. .+.+..+++|...|..+..++|| ..+++++.||+|++||+...
T Consensus       170 ~k~siYSLA~N~-t~t~ivsGgtek~-lr~wDprt-~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  170 PKDSIYSLAMNQ-TGTIIVSGGTEKD-LRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             CccceeeeecCC-cceEEEecCcccc-eEEecccc-ccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeecccc
Confidence            678899999997 8899999999999 99999998 55678889999999999999999 69999999999999999988


Q ss_pred             CCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          289 GYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      .             ++ ....|...|+++.-+|+-..+.+|+.|+.|..
T Consensus       246 r-------------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  246 R-------------CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             c-------------eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence            7             44 55678888999999999888999999998865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=7.7e-25  Score=178.54  Aligned_cols=285  Identities=14%  Similarity=0.150  Sum_probs=216.5

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ....|.|++||+... |.+|+.-.  ...+..+.+|+|+.+...-..     ...+..|....|+|.+.    .++++++
T Consensus       153 f~~GV~~vaFsk~~~-G~~l~~vD--~s~~h~lSVWdWqk~~~~~~v-----k~sne~v~~a~FHPtd~----nliit~G  220 (626)
T KOG2106|consen  153 FDRGVTCVAFSKING-GSLLCAVD--DSNPHMLSVWDWQKKAKLGPV-----KTSNEVVFLATFHPTDP----NLIITCG  220 (626)
T ss_pred             ccccceeeeecccCC-CceEEEec--CCCccccchhhchhhhccCcc-----eeccceEEEEEeccCCC----cEEEEeC
Confidence            356899999999744 55555543  224678899999976654443     34567889999999985    8999999


Q ss_pred             C-cEEEEeecCCcce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 D-SLRLWEIHDDRTE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      . .+.+|+.+.+... ....++.+.   . .-|.+++|.+ ++ -+++|..+|.|.||+..+.+..+....|.+.|.+++
T Consensus       221 k~H~~Fw~~~~~~l~k~~~~fek~e---k-k~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~  294 (626)
T KOG2106|consen  221 KGHLYFWTLRGGSLVKRQGIFEKRE---K-KFVLCVTFLE-NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLC  294 (626)
T ss_pred             CceEEEEEccCCceEEEeecccccc---c-eEEEEEEEcC-CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEE
Confidence            7 9999999888622 223344433   2 6799999996 54 578999999999999988887777679999999999


Q ss_pred             ecCCcEEEEEeCCCcEEEEECCCCcce-----------eeEE--------------------------eCCCCCCCeEEE
Q 040307          174 WGGFNVFASVSGDCSVRVFDLRDKERS-----------TIIY--------------------------ENPVQDCPLLRL  216 (339)
Q Consensus       174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~--------------------------~~~~~~~~v~~~  216 (339)
                      ......|++|+.|+.|..||-.-.+..           ..+.                          ....|......+
T Consensus       295 ~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl  374 (626)
T KOG2106|consen  295 MLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL  374 (626)
T ss_pred             EecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE
Confidence            993334556999999999993221100           0000                          001255677788


Q ss_pred             EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307          217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG  296 (339)
Q Consensus       217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  296 (339)
                      +.+| +...+++++.|+. +++|+   ..+++.+... ..++.++.|+|.|  .+|.|+..|...+.|.++..       
T Consensus       375 a~hp-s~~q~~T~gqdk~-v~lW~---~~k~~wt~~~-~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~-------  439 (626)
T KOG2106|consen  375 ATHP-SKNQLLTCGQDKH-VRLWN---DHKLEWTKII-EDPAECADFHPSG--VVAVGTATGRWFVLDTETQD-------  439 (626)
T ss_pred             EcCC-ChhheeeccCcce-EEEcc---CCceeEEEEe-cCceeEeeccCcc--eEEEeeccceEEEEecccce-------
Confidence            8898 7888999999998 99998   2445544443 6788999999997  89999999999999999866       


Q ss_pred             CCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                            .+.+....++++.++|+|+|.+++.++.|+.|.+|+|
T Consensus       440 ------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V  476 (626)
T KOG2106|consen  440 ------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV  476 (626)
T ss_pred             ------eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence                  4555545889999999999998888999999999975

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=193.57  Aligned_cols=305  Identities=15%  Similarity=0.176  Sum_probs=232.2

Q ss_pred             CCCceeeeeec-cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCC
Q 040307            6 EKKPGVHTYMA-QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSE   83 (339)
Q Consensus         6 ~~~~~~~~~~~-~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~   83 (339)
                      .+++.+++|.. ...|+++.=+|.   -+.+|+|.    .+|+|.|+++..+  +...    .+.|. ++|+.++|..||
T Consensus       190 rt~K~v~~f~~~~s~IT~ieqsPa---LDVVaiG~----~~G~ViifNlK~d--kil~----sFk~d~g~VtslSFrtDG  256 (910)
T KOG1539|consen  190 RTGKVVYTFQEFFSRITAIEQSPA---LDVVAIGL----ENGTVIIFNLKFD--KILM----SFKQDWGRVTSLSFRTDG  256 (910)
T ss_pred             ccCcEEEEecccccceeEeccCCc---ceEEEEec----cCceEEEEEcccC--cEEE----EEEccccceeEEEeccCC
Confidence            45788888874 689999999999   88999999    8999999666654  3333    35665 999999999999


Q ss_pred             CCCCCCeEEEeCC--cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----
Q 040307           84 ETLNPDIVATSGD--SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----  156 (339)
Q Consensus        84 ~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----  156 (339)
                      .    .++|+|+.  .+.+||++..+  ....+ ..|.     +.|+...|.| ....+++++.|..+++|=.+++    
T Consensus       257 ~----p~las~~~~G~m~~wDLe~kk--l~~v~~nah~-----~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~p  324 (910)
T KOG1539|consen  257 N----PLLASGRSNGDMAFWDLEKKK--LINVTRNAHY-----GSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVP  324 (910)
T ss_pred             C----eeEEeccCCceEEEEEcCCCe--eeeeeecccc-----CCcccceecC-CCceEeeccCCCceeEEEeeCCCCcc
Confidence            5    67777763  89999999886  44433 3565     7899999997 8899999999999998855543    


Q ss_pred             eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceee--------------------------------
Q 040307          157 ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTI--------------------------------  202 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~--------------------------------  202 (339)
                      +.++.-.+|..+..|+.|.  .+..+.+++.|++++.+++........                                
T Consensus       325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~  404 (910)
T KOG1539|consen  325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE  404 (910)
T ss_pred             hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence            3455557899999999998  688999999999888887642210000                                


Q ss_pred             ---------------------------------EEeC---CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          203 ---------------------------------IYEN---PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       203 ---------------------------------~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                                                       ....   ......+++++.++ .|++.+.|...|. |-+|++++ +-
T Consensus       405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~-Id~fNmQS-Gi  481 (910)
T KOG1539|consen  405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGT-IDRFNMQS-GI  481 (910)
T ss_pred             cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCe-EEEEEccc-Ce
Confidence                                             0000   00225678888886 8999999999998 99999987 54


Q ss_pred             ceEEE---ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC----CCC------------CCCCC--Ccc----
Q 040307          247 PVVVL---SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY----RSG------------NGGPS--GDV----  301 (339)
Q Consensus       247 ~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~----~~~------------~~~~~--~~~----  301 (339)
                      ...++   ..|.++|++++..-.+ +.+++++.+|.+++||+....-    +..            .....  ...    
T Consensus       482 ~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v  560 (910)
T KOG1539|consen  482 HRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV  560 (910)
T ss_pred             eecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence            45556   5899999999999988 6999999999999999987651    000            00000  000    


Q ss_pred             -c-----c-eeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          302 -E-----P-ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       302 -~-----~-~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                       .     . ....+|...|++++|||||+++++++.|++||+|+|
T Consensus       561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence             0     0 122368999999999999999999999999999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.2e-26  Score=182.76  Aligned_cols=244  Identities=18%  Similarity=0.273  Sum_probs=198.8

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce--eEEE---eecC-----CC-ccCCCCEEEEEEcCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE--LKSL---LNSN-----KT-SEFSSAITSFDWAGF  134 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~--~~~~---~~~~-----~~-~~~~~~i~~~~~~~~  134 (339)
                      ..|.-+|.+++++|++     .+..+++ + +|.=|++.++...  ....   ++.|     .. ..|...+.+++.+| 
T Consensus       139 ~~H~~s~~~vals~d~-----~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-  212 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDD-----KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-  212 (479)
T ss_pred             ccccCcceEEEeeccc-----cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-
Confidence            5899999999999999     7777777 4 9999998877511  0000   1101     01 24558899999998 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL  213 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  213 (339)
                      ++++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|- ..+.+++++.|+.|++|++........++.   |+..|
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG---Hqd~v  289 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG---HQDGV  289 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC---Cccce
Confidence            99999999999999999999999999999999999999999 677899999999999999998775555444   67889


Q ss_pred             EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC
Q 040307          214 LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG  293 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~  293 (339)
                      ..+.-.. .++.+-+|+.|.+ +++|++..  .....+.+|.+.+-+++|-.+.  .+++|+.+|.|.+|++...+    
T Consensus       290 ~~IdaL~-reR~vtVGgrDrT-~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKk----  359 (479)
T KOG0299|consen  290 LGIDALS-RERCVTVGGRDRT-VRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKK----  359 (479)
T ss_pred             eeechhc-ccceEEeccccce-eEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccC----
Confidence            9988774 7778888889999 99999954  4455678888999999998874  79999999999999999877    


Q ss_pred             CCCCCCcccceeee-------------cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          294 NGGPSGDVEPELCY-------------QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       294 ~~~~~~~~~~~~~~-------------~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                               |+...             .+...|++++..|....+++++.+|.||+|.+
T Consensus       360 ---------plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  360 ---------PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             ---------ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence                     33211             12248999999999887778889999999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-24  Score=183.35  Aligned_cols=282  Identities=16%  Similarity=0.160  Sum_probs=223.2

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      .+.+|.++||+.+   .+.||++-    .+|.|.||++..   .......+..+....|.+++|++.+     +++.++.
T Consensus        24 ~Ps~I~slA~s~k---S~~lAvsR----t~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~~-----RLFS~g~   88 (691)
T KOG2048|consen   24 KPSEIVSLAYSHK---SNQLAVSR----TDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEGG-----RLFSSGL   88 (691)
T ss_pred             eccceEEEEEecc---CCceeeec----cCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccCC-----eEEeecC
Confidence            4789999999999   88899998    799999977665   2333334544566789999999888     7888777


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee--eeeeccCCceeEE
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE--TQLVAHDREVYDI  172 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~v~~~  172 (339)
                      + .|.-||+.+.+  +...+....     ++|.+++.+| .+..++.|++||.++.++...++..  ..+...++.|.++
T Consensus        89 sg~i~EwDl~~lk--~~~~~d~~g-----g~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl  160 (691)
T KOG2048|consen   89 SGSITEWDLHTLK--QKYNIDSNG-----GAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL  160 (691)
T ss_pred             CceEEEEecccCc--eeEEecCCC-----cceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence            6 99999999987  666666655     8999999998 8899999999998888888776633  3344456889999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-----eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-----ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      +|+ ++..++.|+.||.|++||...+.......     .......-|+++.|-  ....|++|...|. |.+||... +.
T Consensus       161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~-V~FWd~~~-gT  236 (691)
T KOG2048|consen  161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGT-VTFWDSIF-GT  236 (691)
T ss_pred             EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCce-EEEEcccC-cc
Confidence            999 67779999999999999999988555211     111123446777776  5578899999998 99999987 77


Q ss_pred             ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc-eeeecccceeEEEEecCCCCce
Q 040307          247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP-ELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                      .+..+..|.+.|.+++..+++ ..+++++.|+.|.-|.......         .... .....|...|.+++..++  .+
T Consensus       237 LiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~---------~wv~~~~r~~h~hdvrs~av~~~--~l  304 (691)
T KOG2048|consen  237 LIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKS---------EWVINSRRDLHAHDVRSMAVIEN--AL  304 (691)
T ss_pred             hhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCcc---------ceeeeccccCCcccceeeeeecc--eE
Confidence            888999999999999999998 5999999999999998888761         0111 123357778999998887  57


Q ss_pred             EEEecCCeEEE
Q 040307          326 IAIAFVNKLQL  336 (339)
Q Consensus       326 ~~~~~d~~v~~  336 (339)
                      ++++.|.+|.+
T Consensus       305 ~sgG~d~~l~i  315 (691)
T KOG2048|consen  305 ISGGRDFTLAI  315 (691)
T ss_pred             EecceeeEEEE
Confidence            88889988765

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=171.30  Aligned_cols=261  Identities=19%  Similarity=0.236  Sum_probs=198.6

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccC---CeEEEEecCCCCCc-----ccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYS---NKIELVNFNPETSD-----FSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~---~~i~i~~~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      +.+.|..++-+|.  +..+|++..+.....   ..+.||++..+.+.     +.....+...+-+.|.|+.|.|++    
T Consensus        62 ~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns----  135 (370)
T KOG1007|consen   62 HAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS----  135 (370)
T ss_pred             CCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC----
Confidence            4578999999997  356777766422222   45789888765443     333223433556789999999998    


Q ss_pred             CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCeeeeee-ec
Q 040307           88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAG-FDTRRVATCSVDTTCVIWDIDREILETQL-VA  164 (339)
Q Consensus        88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~  164 (339)
                       +-+|+-.+ .|.+|+++.... ....+......++....++-+|+| ++++.+++. .|+++..||+++.+....+ .+
T Consensus       136 -~klasm~dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  136 -DKLASMDDNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             -CeeEEeccCceEEEEcccCcc-hheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence             77888777 999999988752 133333322233346788999999 577777775 5799999999988766666 57


Q ss_pred             cCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          165 HDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       165 ~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      |...|.++.|+|  ..+|++|+.||.|++||+|..+.+......  |...+.++.|+|.-.+++++|+.|.. |.+|...
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~--HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~  289 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG--HSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCAS  289 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC--CceEEEEEEecCccceEEEecCCCce-eEEEecc
Confidence            888999999994  668999999999999999998876655544  88899999999988899999999998 9999664


Q ss_pred             CCC----------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          243 FPT----------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       243 ~~~----------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      .-.                            ..+.++..|...|++++||...+-.+|+-+.||++.|=.+...
T Consensus       290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            311                            1234677899999999999998888999999999988666543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=5.7e-24  Score=177.28  Aligned_cols=262  Identities=11%  Similarity=0.105  Sum_probs=182.7

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeecCCcce
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIHDDRTE  109 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~~~~~~  109 (339)
                      ..+++++    .|+.|++|+...  .+...  .  ..+...+.+++|+|++     ..+ ++++ + .|++||..+++  
T Consensus         2 ~~~~s~~----~d~~v~~~d~~t--~~~~~--~--~~~~~~~~~l~~~~dg-----~~l~~~~~~~~~v~~~d~~~~~--   64 (300)
T TIGR03866         2 KAYVSNE----KDNTISVIDTAT--LEVTR--T--FPVGQRPRGITLSKDG-----KLLYVCASDSDTIQVIDLATGE--   64 (300)
T ss_pred             cEEEEec----CCCEEEEEECCC--CceEE--E--EECCCCCCceEECCCC-----CEEEEEECCCCeEEEEECCCCc--
Confidence            4677777    699999977653  33332  2  2333457889999999     554 5655 3 99999998876  


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEE-EeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT-CSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC  187 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  187 (339)
                      ....+..+.      .+..++|+| +++.+++ ++.++.|++||+++.+.+..+. +...+.+++|+ ++.++++++.++
T Consensus        65 ~~~~~~~~~------~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~  136 (300)
T TIGR03866        65 VIGTLPSGP------DPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETT  136 (300)
T ss_pred             EEEeccCCC------CccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCC
Confidence            444454432      356789998 7776654 4568999999999887777665 33456889999 788888888765


Q ss_pred             -cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCCeEEEEecCCCCCceEEEecCC-----C--Ce
Q 040307          188 -SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG-MDSNKVVVLDIRFPTNPVVVLSKHE-----G--SV  258 (339)
Q Consensus       188 -~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~~i~i~d~~~~~~~~~~~~~~~-----~--~v  258 (339)
                       .+.+||.++.+.......    ...+..++|+| +++.|++++ .++. |++||++. .+.+..+..+.     .  ..
T Consensus       137 ~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~-v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  209 (300)
T TIGR03866       137 NMAHFIDTKTYEIVDNVLV----DQRPRFAEFTA-DGKELWVSSEIGGT-VSVIDVAT-RKVIKKITFEIPGVHPEAVQP  209 (300)
T ss_pred             CeEEEEeCCCCeEEEEEEc----CCCccEEEECC-CCCEEEEEcCCCCE-EEEEEcCc-ceeeeeeeecccccccccCCc
Confidence             467789887664333322    23457799998 777775544 5777 99999987 44444443221     1  23


Q ss_pred             eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE-ecCCeEEEE
Q 040307          259 NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI-AFVNKLQLL  337 (339)
Q Consensus       259 ~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w  337 (339)
                      ..++|+|++...+++.+.++.+.+||+...+             ......+...+.+++|+|+++.|+++ +.++.|++|
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYE-------------VLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCc-------------EEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence            4689999995334445567789999998766             33333445579999999999988775 468999999


Q ss_pred             eC
Q 040307          338 KV  339 (339)
Q Consensus       338 ~v  339 (339)
                      ++
T Consensus       277 d~  278 (300)
T TIGR03866       277 DV  278 (300)
T ss_pred             EC
Confidence            85

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.6e-25  Score=187.58  Aligned_cols=296  Identities=16%  Similarity=0.132  Sum_probs=227.5

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE-ee-cCCCCceEEEEcCCCCCCCCCeEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL-IF-DHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~-~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      .|++.|+++.|+|.   +..|++++    .|.++.+|.-+..++.......+ +. +.....+...|+|++     .+++
T Consensus       265 GHeDWV~sv~W~p~---~~~LLSAS----aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-----~~ii  332 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPE---GLDLLSAS----ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-----NVII  332 (764)
T ss_pred             CcccceEEEEEccc---hhhheecc----cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-----CEEE
Confidence            57899999999999   88888888    69999998877776666552222 11 234568899999999     6777


Q ss_pred             EeC--CcEEEEeecCC-cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeecc
Q 040307           93 TSG--DSLRLWEIHDD-RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI----LETQLVAH  165 (339)
Q Consensus        93 ~~~--~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~  165 (339)
                      +-+  +..++|...+. .+.+...+.+|.     ..|++++|+| .|.+|++.+.|.+-+++-.-..+    .+..-+-|
T Consensus       333 ~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~-----~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH  406 (764)
T KOG1063|consen  333 AHGRTGGFHLWKTKDKTFWTQEPVISGHV-----DGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH  406 (764)
T ss_pred             EecccCcEEEEeccCccceeecccccccc-----ccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccc
Confidence            666  39999994332 244555667777     9999999998 99999999999999998764211    22333568


Q ss_pred             CCceeEEEecC-CcEEEEEeCCCcEEEEECCCC--------------------------------ccee-----------
Q 040307          166 DREVYDISWGG-FNVFASVSGDCSVRVFDLRDK--------------------------------ERST-----------  201 (339)
Q Consensus       166 ~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~--------------------------------~~~~-----------  201 (339)
                      ...++|+++-+ ...|++|.....+|+|+....                                +...           
T Consensus       407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~  486 (764)
T KOG1063|consen  407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA  486 (764)
T ss_pred             cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence            88999999995 778899999999999986311                                0000           


Q ss_pred             ------------eEEe------------------CCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCCCCc
Q 040307          202 ------------IIYE------------------NPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFPTNP  247 (339)
Q Consensus       202 ------------~~~~------------------~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~~~~  247 (339)
                                  .+..                  .-+|...|.+++.+| +++++|+++....    .|++|+..+ ...
T Consensus       487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~-W~~  564 (764)
T KOG1063|consen  487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN-WLQ  564 (764)
T ss_pred             eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc-hhh
Confidence                        0000                  013778999999998 9999999877654    499999887 555


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA  327 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  327 (339)
                      ...+.+|.-.|+.++||||+ ++|++.+.|.++.+|...... ..+       ..-.....|..-|.+..|+|++.++++
T Consensus       565 ~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~-~~e-------~~fa~~k~HtRIIWdcsW~pde~~FaT  635 (764)
T KOG1063|consen  565 VQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDI-KDE-------FRFACLKAHTRIIWDCSWSPDEKYFAT  635 (764)
T ss_pred             hheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeeccc-chh-------hhhccccccceEEEEcccCcccceeEE
Confidence            67899999999999999999 799999999999999986654 110       001125578889999999999999999


Q ss_pred             EecCCeEEEEeC
Q 040307          328 IAFVNKLQLLKV  339 (339)
Q Consensus       328 ~~~d~~v~~w~v  339 (339)
                      ++.|++|.+|.+
T Consensus       636 aSRDK~VkVW~~  647 (764)
T KOG1063|consen  636 ASRDKKVKVWEE  647 (764)
T ss_pred             ecCCceEEEEec
Confidence            999999999974

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-25  Score=183.03  Aligned_cols=269  Identities=14%  Similarity=0.209  Sum_probs=209.1

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      +..+..+.++.|+..   .. |++++  ...|..+++|.-+...+++....   ....+.-.|++.....     .++++
T Consensus        31 ~t~~pg~~s~~w~~~---n~-lvvas--~~gdk~~~~~~K~g~~~~Vp~~~---k~~gd~~~Cv~~~s~S-----~y~~s   96 (673)
T KOG4378|consen   31 QTAEPGDFSFNWQRR---NF-LVVAS--MAGDKVMRIKEKDGKTPEVPRVR---KLTGDNAFCVACASQS-----LYEIS   96 (673)
T ss_pred             CCCCCcceeeecccc---ce-EEEee--cCCceeEEEecccCCCCccceee---ccccchHHHHhhhhcc-----eeeec
Confidence            333456999999988   54 44444  12688899976655544444322   2222244555555555     67777


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCcee
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVY  170 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~  170 (339)
                      || + .|+|||+....  +.+.+++|+     ..|+++.++- ...+||+++..|.|.|..+.++.....+... ...|.
T Consensus        97 gG~~~~Vkiwdl~~kl--~hr~lkdh~-----stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   97 GGQSGCVKIWDLRAKL--IHRFLKDHQ-----STVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             cCcCceeeehhhHHHH--HhhhccCCc-----ceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            77 3 99999999654  677888998     9999999995 8899999999999999999988877777533 34566


Q ss_pred             EEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          171 DISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       171 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      -+.|+  ...+|.+++.+|.|.+||+..........+.  |..+...++|+|.+..+|++.+.|.. |.+||.+. ....
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~--HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s-~~s~  244 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA--HSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRS-QAST  244 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhh--ccCCcCcceecCCccceEEEecccce-EEEeeccc-cccc
Confidence            89999  4668889999999999999988755554444  88899999999988899999999999 99999986 4444


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCC
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~  322 (339)
                      ..+. ...+...++|+++| .+|+.|...|.|..||++..+            .|+ ....|...|++++|-|.-
T Consensus       245 ~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k------------~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  245 DRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK------------APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ceee-ecCCcceeeecCCc-eEEEeecCCceEEEEecccCC------------CCceEeeecccceeEEEeeecc
Confidence            4444 36789999999999 799999999999999999987            455 555788999999999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.3e-25  Score=189.46  Aligned_cols=235  Identities=14%  Similarity=0.145  Sum_probs=198.4

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEE-EEEcCCCCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITS-FDWAGFDTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~  144 (339)
                      .+|...|..++..+..      .+++++ | ++++|+-..+++.....+.+|.     +-|.. +++-+.++..+++|+.
T Consensus        11 ~gH~~DVr~v~~~~~~------~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~-----g~i~~~i~y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV------CIISGSRDGTVKVWAKKGKQYLETHAFEGPK-----GFIANSICYAESDKGRLVVGGM   79 (745)
T ss_pred             ccCccchheeEecCCe------EEeecCCCCceeeeeccCcccccceecccCc-----ceeeccceeccccCcceEeecc
Confidence            6899999999987765      566666 5 9999999888766666677766     55655 7777546667999999


Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |.+|.+|.+.+..++..+.+|...|.++.......+++|+.|.++++|.......     ..+.|+..|+.++.-| ++ 
T Consensus        80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWAv~~l~-e~-  152 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY-----SLQGHTASVWAVASLP-EN-  152 (745)
T ss_pred             cceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc-----ccCCcchheeeeeecC-CC-
Confidence            9999999999999999999999999999877434499999999999998776542     2445899999999987 44 


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      .+++|+.|.. |++|.-   ++.+.++.+|...|+++++-|++  -+++++.||.|++|++....             ..
T Consensus       153 ~~vTgsaDKt-IklWk~---~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge~-------------l~  213 (745)
T KOG0301|consen  153 TYVTGSADKT-IKLWKG---GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGEV-------------LL  213 (745)
T ss_pred             cEEeccCcce-eeeccC---CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEeccCce-------------ee
Confidence            8899999999 999964   56789999999999999999996  58999999999999995544             55


Q ss_pred             eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...+|...|++++..+++..+++++.|+++|+|+.
T Consensus       214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             eeeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence            77799999999997777778899999999999973

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-27  Score=201.62  Aligned_cols=229  Identities=21%  Similarity=0.302  Sum_probs=197.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..|...|.++..-...     +.+++|+.  .+-+|.+....  .+..+.+|.     .+|.++.|++ ...+|++|+.+
T Consensus        25 ~~hsaav~~lk~~~s~-----r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~he-----spIeSl~f~~-~E~Llaagsas   91 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSS-----RSLVTGGEDEKVNLWAIGKPN--AITSLTGHE-----SPIESLTFDT-SERLLAAGSAS   91 (825)
T ss_pred             hhhhhhhceeeeeccc-----eeeccCCCceeeccccccCCc--hhheeeccC-----CcceeeecCc-chhhhcccccC
Confidence            4688889999986666     89999985  77799987765  666788988     9999999997 89999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |+|++||++..+.++++.+|...+.++.|+| +.+++.|+.|..+++||.+...+.. .+..  |...+..+.|+| +|.
T Consensus        92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~-~~~s--~~~vv~~l~lsP-~Gr  167 (825)
T KOG0267|consen   92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH-TYKS--HTRVVDVLRLSP-DGR  167 (825)
T ss_pred             CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee-eecC--CcceeEEEeecC-CCc
Confidence            9999999999999999999999999999994 8899999999999999999776433 3444  677899999999 999


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      +++.++.|.. ++|||... ++.+..+..|.+.+..+.|+|.. .++++|+.|+++++||+++.+             .+
T Consensus       168 ~v~~g~ed~t-vki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe-------------~I  231 (825)
T KOG0267|consen  168 WVASGGEDNT-VKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE-------------VI  231 (825)
T ss_pred             eeeccCCcce-eeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE-------------Ee
Confidence            9999999998 99999987 77889999999999999999998 699999999999999999866             22


Q ss_pred             -eeecccceeEEEEecCCCCceEEEe
Q 040307          305 -LCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       305 -~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                       ........|.+.+|+|++..+.++.
T Consensus       232 ~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  232 SSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             eccCCccCCceeeeecCCceeeecCc
Confidence             2223467899999999997555443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.9e-25  Score=178.53  Aligned_cols=274  Identities=11%  Similarity=0.092  Sum_probs=200.2

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCCCc
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNKTS  120 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~~  120 (339)
                      ...++.+|++.............    ...-.++.--. .     .+++++.  . .+.+|.+....  ......--.  
T Consensus        16 d~~~~~~~dl~TGt~~~~ykg~~----~a~~~sl~~l~-~-----~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~P--   81 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSLLQYKGSY----LAQAASLTALN-N-----EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLP--   81 (476)
T ss_pred             CCcceeEEecCCCceeEEecCcc----cccchhhhhhc-h-----hheeeecccCccccccccCchh--hhhhhcccc--
Confidence            45668887777665544431111    11111111111 1     3555554  3 99999997765  222111111  


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-
Q 040307          121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE-  198 (339)
Q Consensus       121 ~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-  198 (339)
                         ++|.+++-+| .|.+++.|+..|.|++|.+.+|+.+..+.+|-..|+|+.|+ ++.+|++|+.||.|.+|++...- 
T Consensus        82 ---g~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   82 ---GPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ---cceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence               6899999998 99999999999999999999999999999999999999999 89999999999999999875321 


Q ss_pred             -----ceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307          199 -----RSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC  272 (339)
Q Consensus       199 -----~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  272 (339)
                           .+..+.....|.-+|+++...+. ....+++++.|.+ +++||+.. +..+.++.. ...+.+++.+|.+ +.+.
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~-g~LLlti~f-p~si~av~lDpae-~~~y  233 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSL-GVLLLTITF-PSSIKAVALDPAE-RVVY  233 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEecc-ceeeEEEec-CCcceeEEEcccc-cEEE
Confidence                 12223333458899999988762 3458999999999 99999987 666666654 6789999999998 6999


Q ss_pred             EEeCCCcEEEEEecCCCCCCC----CCCCCCcccceeeecccc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          273 SVADDSRALIWEVVGPGYRSG----NGGPSGDVEPELCYQSMA--EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       273 ~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .|+.+|.|.+.++........    .+......+.....+|..  .|++++.+-||..|++|+.||.+.||++
T Consensus       234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            999999999998877652111    111111222334557776  9999999999998999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=2.5e-25  Score=179.24  Aligned_cols=250  Identities=17%  Similarity=0.226  Sum_probs=189.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                      .-+.++|++++|+|....   .++|+|..  .|-+||+.+.+  ..-+..+..|.     .+|.+|.|+|.+...+++.+
T Consensus       183 kv~~~Rit~l~fHPt~~~---~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENR---KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----GPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             EecccceEEEEecccCcc---eEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----ccccceEecCCChhheeeec
Confidence            357889999999998842   56677663  99999996332  33556667777     89999999998889999999


Q ss_pred             CCCeEEEEECCCCeee--eeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307          144 VDTTCVIWDIDREILE--TQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       144 ~d~~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p  220 (339)
                      .||+|++-|++.....  ..+......+.++.|+ +...++.+..=|...+||+|...........  |+..|.+++++|
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv~~NP  332 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL--HKKKITSVALNP  332 (498)
T ss_pred             cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh--hhcccceeecCC
Confidence            9999999999876533  3333244566778888 5566666666679999999998865544444  667999999999


Q ss_pred             CCCCeEEEEeeCCCeEEEEecCCCCC---ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307          221 ADPRFMATVGMDSNKVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       221 ~~~~~l~~~~~d~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  297 (339)
                      ....+||+++.|++ .+|||+|....   |+...-.|...|.+..|||.+. .|+|.+.|..|+|||..-..        
T Consensus       333 ~~p~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss~~s--------  402 (498)
T KOG4328|consen  333 VCPWFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSSCIS--------  402 (498)
T ss_pred             CCchheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEeeccccc--------
Confidence            99999999999999 99999987432   3445567999999999999996 59999999999999995221        


Q ss_pred             CCcccceeeecccc------eeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          298 SGDVEPELCYQSMA------EINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       298 ~~~~~~~~~~~~~~------~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                       ...+|.....|..      .....+|.|+...++.+..-..|-|++
T Consensus       403 -a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  403 -AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             -ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence             0113554444422      256789999887666666666666654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-25  Score=181.52  Aligned_cols=263  Identities=15%  Similarity=0.152  Sum_probs=201.6

Q ss_pred             CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe--CC-cEEEEeecCCc--ceeEEEeecCCC
Q 040307           45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS--GD-SLRLWEIHDDR--TELKSLLNSNKT  119 (339)
Q Consensus        45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~--~~-~i~iw~~~~~~--~~~~~~~~~~~~  119 (339)
                      ...++|||+..........   ....+..+.++.|+...     .+++..  +| .+++|.-....  ...+....+   
T Consensus        11 gd~~kl~D~s~~~~~~~~~---~~t~~pg~~s~~w~~~n-----~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g---   79 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYV---HQTAEPGDFSFNWQRRN-----FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG---   79 (673)
T ss_pred             CCceEEeecccccCccccc---cCCCCCcceeeeccccc-----eEEEeecCCceeEEEecccCCCCccceeecccc---
Confidence            4789999887655444331   12223348999999876     433332  24 88888765542  222333333   


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307          120 SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE  198 (339)
Q Consensus       120 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~  198 (339)
                          ..-.|++... ...++++|+..+.|+|||++...+.+.++.|.+.|+++.|+ .+.+||+++..|.|.|..+.++.
T Consensus        80 ----d~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen   80 ----DNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             ----chHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence                2333454443 45899999999999999999777888889999999999999 88999999999999999999988


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS  278 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  278 (339)
                      ....+...  ....+.-+.|+|....+|.+++.+|. |.+||+........-...|..+...|+|+|..+.+|++.+.|.
T Consensus       155 ~tt~f~~~--sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  155 KTTTFTID--SGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             cccceecC--CCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence            66655443  23456789999966777888888888 9999998755555566789999999999999989999999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .|.+||.....             .........+...++|+++|.+|+++...|.|..|++
T Consensus       232 ki~~yD~~s~~-------------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  232 KINIYDIRSQA-------------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             eEEEeeccccc-------------ccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence            99999999766             2333334557899999999998999999999999985

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.6e-24  Score=166.36  Aligned_cols=240  Identities=15%  Similarity=0.183  Sum_probs=183.1

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      ......|.++.|+|...    .+|+++-| .+++|++...+  ....++ |.     .++.+++|.  +...+++|+.||
T Consensus        10 npP~d~IS~v~f~~~~~----~LLvssWDgslrlYdv~~~~--l~~~~~-~~-----~plL~c~F~--d~~~~~~G~~dg   75 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSS----DLLVSSWDGSLRLYDVPANS--LKLKFK-HG-----APLLDCAFA--DESTIVTGGLDG   75 (323)
T ss_pred             CCChhceeeEEEcCcCC----cEEEEeccCcEEEEeccchh--hhhhee-cC-----Cceeeeecc--CCceEEEeccCc
Confidence            45567899999998874    66666667 99999999875  444443 33     799999997  578899999999


Q ss_pred             eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          147 TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      .|+.+|+++++.. .+..|..+|.|+.++ ..+.+++|+.|++|++||.|.......+.    ....|.++..   .++.
T Consensus        76 ~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v---~g~~  147 (323)
T KOG1036|consen   76 QVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDV---SGNR  147 (323)
T ss_pred             eEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc----cCceEEEEec---cCCE
Confidence            9999999988744 455799999999999 67899999999999999999844322222    2347887776   6788


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          226 MATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       226 l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      |++|+.+.. +.+||+++...+.+.-. .-+..+++|++.|+++ =++.++-||+|.+=.++..+   +...     ...
T Consensus       148 LvVg~~~r~-v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~---~~~s-----kky  217 (323)
T KOG1036|consen  148 LVVGTSDRK-VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSE---EAQS-----KKY  217 (323)
T ss_pred             EEEeecCce-EEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCch---HHhh-----hce
Confidence            999999988 99999999776653221 2345789999999774 67888899998886555542   0000     011


Q ss_pred             eeecc---------cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 LCYQS---------MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 ~~~~~---------~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .+.-|         --+|++++|+|-...+++++.||.|.+|++
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence            22222         247999999999888999999999999985

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.94  E-value=1.6e-24  Score=172.12  Aligned_cols=287  Identities=17%  Similarity=0.271  Sum_probs=217.7

Q ss_pred             ccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCC-----cccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           16 AQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETS-----DFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      ...+++++.|.++   .. .||+|+    .|..|+||.++....     .......+ ..|...|+++.|+|++     .
T Consensus        12 ~~~pv~s~dfq~n---~~~~laT~G----~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~g-----e   78 (434)
T KOG1009|consen   12 DHEPVYSVDFQKN---SLNKLATAG----GDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDG-----E   78 (434)
T ss_pred             CCCceEEEEeccC---cccceeccc----CccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCc-----C
Confidence            4579999999999   44 999999    799999998764322     23332233 5799999999999999     8


Q ss_pred             eEEEeCC--cEEEEeec--------C------CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307           90 IVATSGD--SLRLWEIH--------D------DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI  153 (339)
Q Consensus        90 ~la~~~~--~i~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~  153 (339)
                      +||+|+|  .|.+|...        +      ..+.....+.+|.     ..|..++|+| ++.++++++.|..+++||+
T Consensus        79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~-----~diydL~Ws~-d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR-----DDIYDLAWSP-DSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc-----cchhhhhccC-CCceeeeeeccceEEEEEe
Confidence            9999997  99999876        2      1244556677777     8999999998 9999999999999999999


Q ss_pred             CCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE--------------------EeCCCCCCC
Q 040307          154 DREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII--------------------YENPVQDCP  212 (339)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------------~~~~~~~~~  212 (339)
                      ..+.....+..|...+..++|. -++++++-+.|...+.+.+...+.....                    +....-+.-
T Consensus       153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF  232 (434)
T KOG1009|consen  153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF  232 (434)
T ss_pred             ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence            9999999999999999999999 5788898888887777776544321111                    111111123


Q ss_pred             eEEEEEecCCCCeEEEEee----CCC----eEEEEecCCCCCceEEEecCCCCeeEEEeccCC-----------------
Q 040307          213 LLRLEWNKADPRFMATVGM----DSN----KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY-----------------  267 (339)
Q Consensus       213 v~~~~~~p~~~~~l~~~~~----d~~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------  267 (339)
                      ...++|+| +|.++++...    .+.    ..++|+-.....|...+.....++..+.|+|-.                 
T Consensus       233 FrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpy  311 (434)
T KOG1009|consen  233 FRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPY  311 (434)
T ss_pred             hhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccccccc
Confidence            45678998 8888876432    111    257777766677888888877777788777631                 


Q ss_pred             CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          268 GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       268 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      ...+|.++ .+.|.|||.+...             |+...  -|-..|++++|+++|..++..+.||...+
T Consensus       312 rlvfaiAt-~~svyvydtq~~~-------------P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  312 RLVFAIAT-KNSVYVYDTQTLE-------------PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             ceEEEEee-cceEEEecccccc-------------ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            12344444 5689999999977             66433  47889999999999999999999997655

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=2.4e-23  Score=169.89  Aligned_cols=279  Identities=12%  Similarity=0.151  Sum_probs=205.5

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      .++.|....|+|.  +.+++++.+     .+.+.+|.+........ ...++......|.|++|.+++     +.+..-+
T Consensus       199 sne~v~~a~FHPt--d~nliit~G-----k~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~eng-----dviTgDS  265 (626)
T KOG2106|consen  199 SNEVVFLATFHPT--DPNLIITCG-----KGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENG-----DVITGDS  265 (626)
T ss_pred             ccceEEEEEeccC--CCcEEEEeC-----CceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCC-----CEEeecC
Confidence            3567889999998  345556655     89999976654432222 122222334679999999999     6665555


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC------------------
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE------------------  156 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~------------------  156 (339)
                      + .|.||+..+.+  ..+....|.     +.|.+++... ++. |++|+.|..|..||-.-.                  
T Consensus       266 ~G~i~Iw~~~~~~--~~k~~~aH~-----ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  266 GGNILIWSKGTNR--ISKQVHAHD-----GGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             CceEEEEeCCCce--EEeEeeecC-----CceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence            5 99999997776  444444777     8999999984 655 555999999999983210                  


Q ss_pred             ----------------------eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307          157 ----------------------ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL  213 (339)
Q Consensus       157 ----------------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  213 (339)
                                            .......+|.+....++.+ ..+.+++++.|+.+++|+  ..+ +.-...   -..++
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-~~wt~~---~~d~~  410 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-LEWTKI---IEDPA  410 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-eeEEEE---ecCce
Confidence                                  0111123577788888888 688999999999999999  222 221111   23588


Q ss_pred             EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC
Q 040307          214 LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG  293 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~  293 (339)
                      .++.|+| .| .+|.|+..|. ..+.|..+ ...+..... ..+++.++|+|+| .+||.|+.|+.|+||.+....    
T Consensus       411 ~~~~fhp-sg-~va~Gt~~G~-w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g----  480 (626)
T KOG2106|consen  411 ECADFHP-SG-VVAVGTATGR-WFVLDTET-QDLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANG----  480 (626)
T ss_pred             eEeeccC-cc-eEEEeeccce-EEEEeccc-ceeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCC----
Confidence            9999999 77 9999999998 99999987 444444444 8899999999999 599999999999999999877    


Q ss_pred             CCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          294 NGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                            ..-...-.-+..+|+.+.||+|++++.+-+.|-.|.+|.
T Consensus       481 ------~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  481 ------RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             ------cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence                  011112223458999999999999999999999999884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=1.1e-24  Score=183.95  Aligned_cols=301  Identities=14%  Similarity=0.149  Sum_probs=221.4

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc-----------------ccee---------eEee
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF-----------------SADN---------RLIF   68 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~-----------------~~~~---------~~~~   68 (339)
                      .|.+.|.+++|.....+.-+||+++    .|..|+||++...+.+-                 ....         .+..
T Consensus       189 GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  189 GHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             ccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence            4789999999997733245788888    89999999876443110                 0000         1124


Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      +|.+.|+++.|+|.+.    .+|.++.| ++.+|..++....-+...+-....+-.....+.-|+| +++.+++-+..|.
T Consensus       265 GHeDWV~sv~W~p~~~----~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGL----DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGG  339 (764)
T ss_pred             CcccceEEEEEccchh----hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCc
Confidence            8999999999999993    45555557 9999998776421222221111111114578899998 8999999999999


Q ss_pred             EEEEECCCCe---eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecCC
Q 040307          148 CVIWDIDREI---LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       148 v~i~d~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      .++|......   ....+.+|.+.|++++|+ .|.+|++.+.|.+-|+|-.-..+ .-..+..++.|...++|+++-+ .
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-E  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-C
Confidence            9999943322   334457999999999999 69999999999999998765222 2334444556888999999985 4


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCC---------------------------------------------------------
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPT---------------------------------------------------------  245 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~---------------------------------------------------------  245 (339)
                      ...+++|....- +++|+....-                                                         
T Consensus       419 ~~~FVSgAdEKV-lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  419 DLQFVSGADEKV-LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             Cceeeeccccee-eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence            566666666666 9999764210                                                         


Q ss_pred             ------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCCCCCCCCCCCCccc
Q 040307          246 ------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       246 ------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                                        ..++++-+|...|++++.+|++ +++|+++..     ..|++|+..+..            +
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~------------~  564 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWL------------Q  564 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchh------------h
Confidence                              1122345888899999999999 699998843     469999999987            3


Q ss_pred             ceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          303 PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...+..|.-.|+.++||||+++|++++.|+++.+|.+
T Consensus       565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             hheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            4467789999999999999999999999999999973

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=4.4e-25  Score=168.58  Aligned_cols=209  Identities=14%  Similarity=0.194  Sum_probs=165.1

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe------------ee---eeeeccCCceeEEEec--CCcEEEEEeCC
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI------------LE---TQLVAHDREVYDISWG--GFNVFASVSGD  186 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~------------~~---~~~~~~~~~v~~~~~~--~~~~l~~~~~d  186 (339)
                      +.|+.+...+..++++++|+.||.|.+||++...            ++   .--.+|...|.++.|-  +...|.+++.|
T Consensus        44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD  123 (397)
T KOG4283|consen   44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD  123 (397)
T ss_pred             CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence            7899999998899999999999999999997532            11   0113577889999998  67799999999


Q ss_pred             CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC-C-eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307          187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP-R-FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA  264 (339)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~-~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  264 (339)
                      .++++||..+.+....+.-    ++.|.+-+|+|-.. . ++|+|..+-. |++-|+.. +..-..+.+|.+.|.++.|+
T Consensus       124 htlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~-VrLCDi~S-Gs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  124 HTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQ-VRLCDIAS-GSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCc-EEEEeccC-CcceeeeccccCceEEEEec
Confidence            9999999999885554332    46889999998332 3 5555555555 99999998 77889999999999999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEEecCCCC--CCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          265 PLYGRRLCSVADDSRALIWEVVGPGY--RSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       265 p~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |..+.+|++|+.||.|++||++....  +..+... ....|.  ....|.+.|+.++|..++.++++.+.|..+++|+.
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn-~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN-TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeeccc-CccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            99988999999999999999987641  0000000 011122  24468899999999999999999999999999974

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4e-24  Score=164.78  Aligned_cols=286  Identities=14%  Similarity=0.134  Sum_probs=205.9

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +...++.+.. ..|+.|++-   |.+||+|.    .+|.|.|||+..-...-    . ..+|..+|++++||++|     
T Consensus        16 el~~tld~~~-a~~~~Fs~~---G~~lAvGc----~nG~vvI~D~~T~~iar----~-lsaH~~pi~sl~WS~dg-----   77 (405)
T KOG1273|consen   16 ELTHTLDNPL-AECCQFSRW---GDYLAVGC----ANGRVVIYDFDTFRIAR----M-LSAHVRPITSLCWSRDG-----   77 (405)
T ss_pred             hhceeccCCc-cceEEeccC---cceeeeec----cCCcEEEEEccccchhh----h-hhccccceeEEEecCCC-----
Confidence            3444555555 889999999   99999999    79999999887654222    2 26899999999999999     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      +.|++++ | .|.+||+..+.  ++..+.-.      ++|+...|+|.+.+.+++.-.+..-.+-++..+.....-....
T Consensus        78 r~LltsS~D~si~lwDl~~gs--~l~rirf~------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d  149 (405)
T KOG1273|consen   78 RKLLTSSRDWSIKLWDLLKGS--PLKRIRFD------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD  149 (405)
T ss_pred             CEeeeecCCceeEEEeccCCC--ceeEEEcc------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence            8888887 5 99999999998  66666543      7999999999877777776666666666665432111111111


Q ss_pred             C----ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          167 R----EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       167 ~----~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                      +    ...+..|. .|+++++|...|.+.++|..+.+....+...  ....|..+.++. .|+.|+.-+.|.. |+.|++
T Consensus       150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~-~g~~liiNtsDRv-IR~ye~  225 (405)
T KOG1273|consen  150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIVSR-KGRFLIINTSDRV-IRTYEI  225 (405)
T ss_pred             cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEEec-cCcEEEEecCCce-EEEEeh
Confidence            1    12223455 6999999999999999999998765554443  235788899985 9999999999998 999998


Q ss_pred             CCCC------C--ceEEEec--CCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCccccee-eecc
Q 040307          242 RFPT------N--PVVVLSK--HEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQS  309 (339)
Q Consensus       242 ~~~~------~--~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~  309 (339)
                      +...      .  +.++++.  .+..-.+++|+.+|+ +++.++ .-..++||.-..+.             ... ..+.
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-Yv~a~s~~aHaLYIWE~~~Gs-------------LVKILhG~  291 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-YVCAGSARAHALYIWEKSIGS-------------LVKILHGT  291 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-EEEeccccceeEEEEecCCcc-------------eeeeecCC
Confidence            7311      1  1111111  123456889999996 555555 45689999999887             332 2233


Q ss_pred             c-ceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          310 M-AEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       310 ~-~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      . ....++.|+|-.+.+++. ..|.+++|.+
T Consensus       292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             chhheeecccccceeeeeec-cCCceEEEEe
Confidence            3 568899999998744444 8899999963

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.3e-26  Score=200.97  Aligned_cols=260  Identities=18%  Similarity=0.302  Sum_probs=210.1

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccE----EEEeeeccccCCeEEEEecCC--CCCcccceeeEeecCCCCceEEEEcCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSR----LAVGSFLEDYSNKIELVNFNP--ETSDFSADNRLIFDHPYTPTNIAFFPS   82 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~----la~g~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~~~~   82 (339)
                      +....+....+.+.++|.+.   +..    ||.|.    +||.|.+|+-+.  .+......... ..|.+.|..|.|++.
T Consensus        56 k~~~s~~s~~rF~kL~W~~~---g~~~~GlIaGG~----edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~  127 (1049)
T KOG0307|consen   56 KPVGSLQSSNRFNKLAWGSY---GSHSHGLIAGGL----EDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPF  127 (1049)
T ss_pred             cccccccccccceeeeeccc---CCCccceeeccc----cCCceEEecchhhccCcchHHHhhh-cccCCceeeeecccc
Confidence            45666677788999999998   555    56666    899999988765  23333322223 579999999999999


Q ss_pred             CCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307           83 EETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        83 ~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                      ..    .+||+|++  .|.|||+++.+  .-..+..   ......|.+++|+-...+.|++++.+|.+.|||++..+.+.
T Consensus       128 q~----nlLASGa~~geI~iWDlnn~~--tP~~~~~---~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  128 QG----NLLASGADDGEILIWDLNKPE--TPFTPGS---QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             CC----ceeeccCCCCcEEEeccCCcC--CCCCCCC---CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            84    69999985  99999999865  2222211   11227899999997677899999999999999999988877


Q ss_pred             eeeccCC--ceeEEEecC--CcEEEEEeCC---CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          161 QLVAHDR--EVYDISWGG--FNVFASVSGD---CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       161 ~~~~~~~--~v~~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      .+..+.+  .+..++|+|  ...+++++.|   -.|.+||+|....+..+++.  |...|.++.|++.+..+|++++.|+
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~  276 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDN  276 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCC
Confidence            7765554  477899993  5567777665   36999999998888777766  8899999999998889999999999


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      . |.+|+..+ ++.+..+.....++..+.|+|..+.+++.++-||.|.||.+....
T Consensus       277 ~-ii~wN~~t-gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  277 R-IICWNPNT-GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             C-eeEecCCC-ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9 99999998 777888888888999999999998899999999999999998876

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=9.1e-25  Score=185.23  Aligned_cols=251  Identities=16%  Similarity=0.272  Sum_probs=206.3

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      .+.....+.+++.||+   +++||+|.    .-|+++||++..-......     ..|...|.||.|+...-  .-++||
T Consensus       455 ~~d~r~G~R~~~vSp~---gqhLAsGD----r~GnlrVy~Lq~l~~~~~~-----eAHesEilcLeyS~p~~--~~kLLA  520 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPD---GQHLASGD----RGGNLRVYDLQELEYTCFM-----EAHESEILCLEYSFPVL--TNKLLA  520 (1080)
T ss_pred             hcCcccceEEEEECCC---cceecccC----ccCceEEEEehhhhhhhhe-----ecccceeEEEeecCchh--hhHhhh
Confidence            3445578999999999   99999999    7999999888765444433     68999999999986421  117899


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCeeeeeeec----
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT--RRVATCSVDTTCVIWDIDREILETQLVA----  164 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~----  164 (339)
                      +++ | .|+|||+... +.++.++.+|.     ..|+++.|.. ++  ..+++++.|..|..--.+.......+..    
T Consensus       521 SasrdRlIHV~Dv~rn-y~l~qtld~HS-----ssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t  593 (1080)
T KOG1408|consen  521 SASRDRLIHVYDVKRN-YDLVQTLDGHS-----SSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT  593 (1080)
T ss_pred             hccCCceEEEEecccc-cchhhhhcccc-----cceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccc
Confidence            998 4 9999999754 45788999998     9999999985 55  6788999998887543332211222222    


Q ss_pred             -cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          165 -HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       165 -~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                       ....+.+|+.. ...++++++.|+.|+|||+.+++....+.....+++....+...| .|.|+++...|.+ +.++|..
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdkt-l~~~Df~  671 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKT-LCFVDFV  671 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCc-eEEEEec
Confidence             23467889888 588999999999999999999998887777777888899999999 9999999999999 9999998


Q ss_pred             CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       243 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      . ++++.++.+|...|+.+.|.+|- +.|++.+.||.|.||.+...
T Consensus       672 s-gEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  672 S-GECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             c-chhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECchh
Confidence            8 78899999999999999999998 69999999999999998753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=9e-24  Score=163.41  Aligned_cols=285  Identities=16%  Similarity=0.237  Sum_probs=204.6

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC--------cccceeeEeecCCCCceEEEEcCCCCCCCC--C
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS--------DFSADNRLIFDHPYTPTNIAFFPSEETLNP--D   89 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~   89 (339)
                      ...+.|+||   |..|++-+    .|+.+.+|++..+..        .+.....+.......|..-+|-+.-+..+|  .
T Consensus        52 ~kgckWSPD---GSciL~~s----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~  124 (406)
T KOG2919|consen   52 LKGCKWSPD---GSCILSLS----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN  124 (406)
T ss_pred             hccceeCCC---CceEEeec----ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence            346789999   99999988    799999998764321        112222333455667888888632211111  6


Q ss_pred             eEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC-CCCeee--eeee-
Q 040307           90 IVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI-DREILE--TQLV-  163 (339)
Q Consensus        90 ~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~-~~~~~~--~~~~-  163 (339)
                      ++|+.+.  -|++||.-+++  ....+........-.+..+++|+| ||.+|++|. ...|+++|+ +.|+..  .... 
T Consensus       125 l~a~ssr~~PIh~wdaftG~--lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGK--LRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             eeeeccccCceeeeeccccc--cccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence            7777774  99999999998  444443322111113556899998 999998765 689999999 555422  1111 


Q ss_pred             ----ccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307          164 ----AHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV  237 (339)
Q Consensus       164 ----~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~  237 (339)
                          +..+.+.+++|+  +...++.++...++-||.-........+.   +|.+.|+.+.|++ +|+.|++|....-+|.
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~e-dGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCE-DGNKLFSGARKDDKIL  276 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEecc-CcCeecccccCCCeEE
Confidence                236778999999  46789999999999888877766444433   3789999999998 8899999887665699


Q ss_pred             EEecCCCCCceEEEecCCC-CeeEEEe--ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307          238 VLDIRFPTNPVVVLSKHEG-SVNGISW--APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN  314 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~-~v~~~~~--~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  314 (339)
                      .||+|....++..+..|.. .-..|.|  .|++ .+|++|+.||.|++||++...           -++.....+..-++
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~g-----------n~~sv~~~~sd~vN  344 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLG-----------NEVSVTGNYSDTVN  344 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCC-----------Cccccccccccccc
Confidence            9999998889999988876 3344544  5788 599999999999999999965           12445556788899


Q ss_pred             EEEecCCCCceEEEecCC
Q 040307          315 VVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       315 ~~~~~p~~~~l~~~~~d~  332 (339)
                      .++++|-=+ +++++...
T Consensus       345 gvslnP~mp-ilatssGq  361 (406)
T KOG2919|consen  345 GVSLNPIMP-ILATSSGQ  361 (406)
T ss_pred             ceecCcccc-eeeeccCc
Confidence            999999865 45554443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=3.7e-22  Score=166.33  Aligned_cols=268  Identities=14%  Similarity=0.093  Sum_probs=183.7

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEE-EEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRL-AVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~l-a~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++.+..+.....+.+++|+|+   +..+ +++.    .++.|++|+...  .+...  .+  .....+..+.|+|++  
T Consensus        20 t~~~~~~~~~~~~~~~l~~~~d---g~~l~~~~~----~~~~v~~~d~~~--~~~~~--~~--~~~~~~~~~~~~~~g--   84 (300)
T TIGR03866        20 TLEVTRTFPVGQRPRGITLSKD---GKLLYVCAS----DSDTIQVIDLAT--GEVIG--TL--PSGPDPELFALHPNG--   84 (300)
T ss_pred             CCceEEEEECCCCCCceEECCC---CCEEEEEEC----CCCeEEEEECCC--CcEEE--ec--cCCCCccEEEECCCC--
Confidence            3455666666666888999999   8866 4555    689999977653  33322  12  222345788999999  


Q ss_pred             CCCCeE-EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-eEEEEECCCCeeeee
Q 040307           86 LNPDIV-ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-TCVIWDIDREILETQ  161 (339)
Q Consensus        86 ~~~~~l-a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~  161 (339)
                         +.+ ++++ + .+++||+.+.+  .+..+...      ..+.+++|+| +++++++++.++ .+.+||.++++....
T Consensus        85 ---~~l~~~~~~~~~l~~~d~~~~~--~~~~~~~~------~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        85 ---KILYIANEDDNLVTVIDIETRK--VLAEIPVG------VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             ---CEEEEEcCCCCeEEEEECCCCe--EEeEeeCC------CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence               555 4444 4 99999998865  55555432      3467899998 999999888765 567789988876655


Q ss_pred             eeccCCceeEEEec-CCcEEE-EEeCCCcEEEEECCCCcceeeEEeC-C---CCCCCeEEEEEecCCCCeEEEE-eeCCC
Q 040307          162 LVAHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLRDKERSTIIYEN-P---VQDCPLLRLEWNKADPRFMATV-GMDSN  234 (339)
Q Consensus       162 ~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~-~---~~~~~v~~~~~~p~~~~~l~~~-~~d~~  234 (339)
                      +. ......+++|+ ++.+|+ ++..++.|++||+++.+....+... +   ........++|+| ++++++++ +.++.
T Consensus       153 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~  230 (300)
T TIGR03866       153 VL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANR  230 (300)
T ss_pred             EE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCe
Confidence            43 23355788999 677665 4456899999999987644332211 0   0112345688998 77765543 44555


Q ss_pred             eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307          235 KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI  313 (339)
Q Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (339)
                       +.+||++. .+.+..+. +...+.+++|+|++. +|+++ +.+|.|++||+...+             ++.........
T Consensus       231 -i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~  293 (300)
T TIGR03866       231 -VAVVDAKT-YEVLDYLL-VGQRVWQLAFTPDEK-YLLTTNGVSNDVSVIDVAALK-------------VIKSIKVGRLP  293 (300)
T ss_pred             -EEEEECCC-CcEEEEEE-eCCCcceEEECCCCC-EEEEEcCCCCeEEEEECCCCc-------------EEEEEEccccc
Confidence             99999976 44444433 455789999999994 77665 568999999999987             44444455667


Q ss_pred             EEEEecC
Q 040307          314 NVVRWSP  320 (339)
Q Consensus       314 ~~~~~~p  320 (339)
                      +.++++|
T Consensus       294 ~~~~~~~  300 (300)
T TIGR03866       294 WGVVVRP  300 (300)
T ss_pred             ceeEeCC
Confidence            8888775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.6e-23  Score=180.88  Aligned_cols=239  Identities=19%  Similarity=0.288  Sum_probs=190.8

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..|...-+.|+|.|++     .+|.+++ + .|++|+.....- .-.++..+.     ..|.+++-   ...+|++|+.+
T Consensus        10 yaht~G~t~i~~d~~g-----efi~tcgsdg~ir~~~~~sd~e-~P~ti~~~g-----~~v~~ia~---~s~~f~~~s~~   75 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDG-----EFICTCGSDGDIRKWKTNSDEE-EPETIDISG-----ELVSSIAC---YSNHFLTGSEQ   75 (933)
T ss_pred             hhccCceEEEEEcCCC-----CEEEEecCCCceEEeecCCccc-CCchhhccC-----ceeEEEee---cccceEEeecc
Confidence            5789999999999999     6777666 6 999999877631 222233233     67777776   45699999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      ++|.+|.+..++.-..+....-++++++|+ ++++++.|+.|-.|++.++........+ .+  |+.+|.++.|+| .++
T Consensus        76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rg--h~apVl~l~~~p-~~~  151 (933)
T KOG1274|consen   76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RG--HDAPVLQLSYDP-KGN  151 (933)
T ss_pred             ceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cc--cCCceeeeeEcC-CCC
Confidence            999999999888666666677789999999 8999999999999999999887744443 33  789999999999 999


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEec-------C-CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSK-------H-EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG  296 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-------~-~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  296 (339)
                      +||+.+.||. |++||+.. +....++.+       . ...+..++|+|++. .++..+.|+.|++|+.....       
T Consensus       152 fLAvss~dG~-v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we-------  221 (933)
T KOG1274|consen  152 FLAVSSCDGK-VQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWE-------  221 (933)
T ss_pred             EEEEEecCce-EEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCce-------
Confidence            9999999999 99999986 443333332       1 34567899999984 77888889999999999988       


Q ss_pred             CCCcccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          297 PSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       297 ~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                           ...  ....+...+..++|+|.|.||+|++.||.|.||++
T Consensus       222 -----~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  222 -----LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             -----eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence                 112  22234445999999999999999999999999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.92  E-value=2.2e-23  Score=159.02  Aligned_cols=246  Identities=17%  Similarity=0.311  Sum_probs=190.5

Q ss_pred             eeeccCCeeEEEeeecCC--cccEEEEeeeccccCCeEEEEecCCCCCcccceeeE----eecCCCCceEEEEcCCCCCC
Q 040307           13 TYMAQWPISTVAWSVRHD--RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL----IFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~--~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~~~   86 (339)
                      +|.|+.|++.+.|.|+..  ..++||+.+      ..+++|....+.........+    ...+..++++..|+.-.   
T Consensus        92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d---  162 (364)
T KOG0290|consen   92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD---  162 (364)
T ss_pred             CCCCCCCccceEecCCccccCcchhhccc------CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC---
Confidence            478999999999999953  335777755      799999998765544432222    23567889999999876   


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV  163 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  163 (339)
                       |+++.+++ | +..|||++.+. ......+-.|.     .+|..++|....-+.||+.+.||.|++||++..+....+.
T Consensus       163 -p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD-----KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY  236 (364)
T KOG0290|consen  163 -PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD-----KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY  236 (364)
T ss_pred             -cceeEeecccCeEEEEEEeeccccceeeEEEecC-----cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence             38888888 7 99999999973 22455667777     8999999996456799999999999999998876443332


Q ss_pred             ---ccCCceeEEEec--CCcEEEEEeCC-CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307          164 ---AHDREVYDISWG--GFNVFASVSGD-CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV  237 (339)
Q Consensus       164 ---~~~~~v~~~~~~--~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~  237 (339)
                         ....+...++|+  +.+++|+-..| ..|.+.|+|.+..+......  |++.|+.++|.|.....|.+++.|.. +.
T Consensus       237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~q-al  313 (364)
T KOG0290|consen  237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQ-AL  313 (364)
T ss_pred             cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcce-EE
Confidence               224578899999  68888887766 56999999998866665555  89999999999999999999999988 99


Q ss_pred             EEecCCCCC-----ceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          238 VLDIRFPTN-----PVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       238 i~d~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      +||+.....     |+.... -.+.|+.+.|+|..+..++.+...
T Consensus       314 iWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  314 IWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             EEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            999976443     333333 357899999998877788887743

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=7.9e-23  Score=157.99  Aligned_cols=254  Identities=19%  Similarity=0.213  Sum_probs=173.1

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|++++|+.||     +.||+++ | .|+||++++-+.+..+.++..-  ++ ...+.+.|.|.-...+++.-..
T Consensus        83 KgH~~~vt~~~FsSdG-----K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~-dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDG-----KKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EY-DHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hccCCceeeeEEcCCC-----ceeEEEeCCceEEEEecchhhhhhhhHhhccc--cC-CCceEEEECCCcceEEEEEccC
Confidence            5899999999999999     8999887 4 9999999875421111111111  11 3567899999334455566667


Q ss_pred             CeEEEEECCCCe---e------ee---eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCC
Q 040307          146 TTCVIWDIDREI---L------ET---QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCP  212 (339)
Q Consensus       146 ~~v~i~d~~~~~---~------~~---~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  212 (339)
                      .++++|.+...+   .      .-   .-..|.-.+..+-.. .+.+|++++.|..|.+|+++ ++.+..+-.   ....
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt---nq~~  230 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT---NQSS  230 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc---cccc
Confidence            789999874322   0      00   012344555555555 68899999999999999999 553444332   2345


Q ss_pred             eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       213 v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      -+..+.+| +|+++++++.... |++|..--..       ..+.++.+|...|..++|+++. ..+++.+.||+++|||+
T Consensus       231 n~~aavSP-~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  231 NYDAAVSP-DGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             ccceeeCC-CCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeec
Confidence            67789999 9999999999988 9999864211       2356789999999999999998 69999999999999998


Q ss_pred             cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      +-.-...++..... .-+.......+....++.+|.|. +++.+....|++|.
T Consensus       308 dVrY~~~qDpk~Lk-~g~~pl~aag~~p~RL~lsP~g~-~lA~s~gs~l~~~~  358 (420)
T KOG2096|consen  308 DVRYEAGQDPKILK-EGSAPLHAAGSEPVRLELSPSGD-SLAVSFGSDLKVFA  358 (420)
T ss_pred             cceEecCCCchHhh-cCCcchhhcCCCceEEEeCCCCc-EEEeecCCceEEEE
Confidence            75431000000000 00111112233445899999997 77777777777763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=9.9e-24  Score=163.43  Aligned_cols=249  Identities=22%  Similarity=0.335  Sum_probs=185.2

Q ss_pred             ccCCeeEEEeeecCCc-ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           16 AQWPISTVAWSVRHDR-KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~-~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      ++...+.++|+-+.+. ..+||+|+    .-|.|+|  ++...+.+..  .+ .+|...|+.+.|.|+..    ++++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G----~~GvIrV--id~~~~~~~~--~~-~ghG~sINeik~~p~~~----qlvls~  154 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGG----YLGVIRV--IDVVSGQCSK--NY-RGHGGSINEIKFHPDRP----QLVLSA  154 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeec----ceeEEEE--Eecchhhhcc--ce-eccCccchhhhcCCCCC----cEEEEe
Confidence            4567889999988653 45788888    6999999  5555555554  33 78999999999999984    899999


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee------e-------
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL------E-------  159 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~------~-------  159 (339)
                      + | .|++|++++..  ++..+.+-  ++|...|.+++|++ ++.+|++++.|.++++|++...+.      .       
T Consensus       155 SkD~svRlwnI~~~~--Cv~VfGG~--egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~  229 (385)
T KOG1034|consen  155 SKDHSVRLWNIQTDV--CVAVFGGV--EGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK  229 (385)
T ss_pred             cCCceEEEEeccCCe--EEEEeccc--ccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence            8 5 99999999987  77777652  24449999999998 999999999999999999984310      0       


Q ss_pred             ---------e------eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCc-----------ceeeEEeCCCCCCCe
Q 040307          160 ---------T------QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKE-----------RSTIIYENPVQDCPL  213 (339)
Q Consensus       160 ---------~------~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~v  213 (339)
                               .      +-.-|...|-|+.|- ++++++-+.++.|..|.....+           ....+...+.....+
T Consensus       230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i  308 (385)
T KOG1034|consen  230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI  308 (385)
T ss_pred             ccCcCCccccccccccccccccchHHHHHHH-hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence                     0      112366777777776 7899999999999999883221           112222222233455


Q ss_pred             EEE--EEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          214 LRL--EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       214 ~~~--~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      .-+  +|+| -++.||.|...|. +.+||++....+.. ++..  ....|+..+|+.++ .+|+....|+.|.-||..
T Consensus       309 Wfirf~~d~-~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  309 WFIRFAFDP-WQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEEeecH-HHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence            544  4565 6789999999998 99999998554322 2222  23579999999999 589999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=8.4e-23  Score=161.97  Aligned_cols=209  Identities=16%  Similarity=0.215  Sum_probs=166.2

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA  140 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  140 (339)
                      -+|.++|..++|+|.++    ..+|+|++  +|.||++..+.     .+++..+.+|.     ..|.-++|+|.-.+.|+
T Consensus        78 ~GHt~~vLDi~w~PfnD----~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~-----rrVg~V~wHPtA~NVLl  148 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFND----CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ-----RRVGLVQWHPTAPNVLL  148 (472)
T ss_pred             cCccccccccccCccCC----ceeecCCCCceEEEEECCCcccccCcccceEEEeecc-----eeEEEEeecccchhhHh
Confidence            68999999999999886    78999995  99999997753     35678889998     99999999998889999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      +++.|.+|.+|++.+++.+..+. |.+.|.++.|+ +|.+|++.+.|..|+|||.++++....-...  .......+.|-
T Consensus       149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h--eG~k~~Raifl  225 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH--EGAKPARAIFL  225 (472)
T ss_pred             hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc--cCCCcceeEEe
Confidence            99999999999999999888887 99999999999 9999999999999999999999854443221  22345566676


Q ss_pred             cCCCCeEEEEeeC--CCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          220 KADPRFMATVGMD--SNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       220 p~~~~~l~~~~~d--~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      . ++.++.+|-..  ..++.+||.....+|+....- ....|.---|.|+...+.++|-.|+.|+.|.+....
T Consensus       226 ~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  226 A-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             c-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            4 77755444322  125999999887777543322 234566667888875444556689999999999876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=3.5e-23  Score=173.36  Aligned_cols=257  Identities=17%  Similarity=0.293  Sum_probs=184.8

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|...|..++|-|.   ...|++++    .|.++++|++....  +.....+ ++|...|.+++|.|.+.    .+|++|
T Consensus        98 aH~nAifDl~wapg---e~~lVsas----GDsT~r~Wdvk~s~--l~G~~~~-~GH~~SvkS~cf~~~n~----~vF~tG  163 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPG---ESLLVSAS----GDSTIRPWDVKTSR--LVGGRLN-LGHTGSVKSECFMPTNP----AVFCTG  163 (720)
T ss_pred             cccceeEeeccCCC---ceeEEEcc----CCceeeeeeeccce--eecceee-cccccccchhhhccCCC----cceeec
Confidence            47789999999998   88899998    79999997766543  3332223 89999999999999985    889999


Q ss_pred             C-C-cEEEEeecCCcce------------------eEEEee--cCC----CccCCCCEEEEEEcCCCCCEEEEEeC-CCe
Q 040307           95 G-D-SLRLWEIHDDRTE------------------LKSLLN--SNK----TSEFSSAITSFDWAGFDTRRVATCSV-DTT  147 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~------------------~~~~~~--~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~  147 (339)
                      + | .|.|||+......                  +...+.  .++    .....+.|+.+.|-  |...||+++. |+.
T Consensus       164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~  241 (720)
T KOG0321|consen  164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADST  241 (720)
T ss_pred             cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcc
Confidence            8 4 9999998754200                  000000  011    11122345566663  8899999988 999


Q ss_pred             EEEEECCCCeeee--------eeecc---CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceee-EEeCCCCCCCeE
Q 040307          148 CVIWDIDREILET--------QLVAH---DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTI-IYENPVQDCPLL  214 (339)
Q Consensus       148 v~i~d~~~~~~~~--------~~~~~---~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~  214 (339)
                      |+|||++......        .+..|   .-.+.++... -|.+|++.+.|+.|++|++++...... .+.+........
T Consensus       242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v  321 (720)
T KOG0321|consen  242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV  321 (720)
T ss_pred             eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee
Confidence            9999998754222        12223   2345566555 477777777899999999998763222 222211111122


Q ss_pred             EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .-..+| ++.++++|+.|.. .++|.+.....+...+.+|...|++++|.|..-.-+++++.|..++||++..+-
T Consensus       322 ks~lSp-d~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  322 KSELSP-DDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eeecCC-CCceEeccCCCcc-eeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            234566 8999999999999 999999998889999999999999999999765568888999999999996644

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.1e-23  Score=171.85  Aligned_cols=239  Identities=15%  Similarity=0.239  Sum_probs=199.7

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      -..-|.++...||   ++.|++|+    +-.++.|||+...+..+..  .+ ....-.+++|+.+||.+    -.+++++
T Consensus       464 rdnyiRSckL~pd---grtLivGG----eastlsiWDLAapTprika--el-tssapaCyALa~spDak----vcFsccs  529 (705)
T KOG0639|consen  464 RDNYIRSCKLLPD---GRTLIVGG----EASTLSIWDLAAPTPRIKA--EL-TSSAPACYALAISPDAK----VCFSCCS  529 (705)
T ss_pred             cccceeeeEecCC---CceEEecc----ccceeeeeeccCCCcchhh--hc-CCcchhhhhhhcCCccc----eeeeecc
Confidence            3567999999999   99999999    7999999998887776665  22 23345688999999994    4455566


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                      | .|.|||+.+..  .++.|++|.     ..+.||..++ +|..|-+|+-|.+|+.||+++++.+.... ..+.|.++.+
T Consensus       530 dGnI~vwDLhnq~--~VrqfqGht-----DGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~  600 (705)
T KOG0639|consen  530 DGNIAVWDLHNQT--LVRQFQGHT-----DGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY  600 (705)
T ss_pred             CCcEEEEEcccce--eeecccCCC-----CCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence            7 99999999987  899999999     8999999997 99999999999999999999998776653 5678999999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK  253 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~  253 (339)
                      + .+++++.|-..+.+.+......++...    ..|+.-|.++.|.+ .|+.+++.+.|+- +..|.+.. +..+.....
T Consensus       601 cP~~dWlavGMens~vevlh~skp~kyql----hlheScVLSlKFa~-cGkwfvStGkDnl-LnawrtPy-GasiFqskE  673 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTSKPEKYQL----HLHESCVLSLKFAY-CGKWFVSTGKDNL-LNAWRTPY-GASIFQSKE  673 (705)
T ss_pred             CCCccceeeecccCcEEEEecCCccceee----cccccEEEEEEecc-cCceeeecCchhh-hhhccCcc-ccceeeccc
Confidence            9 699999999999999888777653222    23678899999998 9999999999998 99998876 444554443


Q ss_pred             CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          254 HEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                       ...|.++..|.+. ++++||+.|....||.+.
T Consensus       674 -~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  674 -SSSVLSCDISFDD-KYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             -cCcceeeeeccCc-eEEEecCCCcceEEEEEe
Confidence             5689999999998 799999999999888763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5.9e-25  Score=186.31  Aligned_cols=230  Identities=19%  Similarity=0.241  Sum_probs=193.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |...+.++..-..   ++.+++|+    .+..+-+|.+........    + .+|..+|.+|.|++..     .+|++|+
T Consensus        27 hsaav~~lk~~~s---~r~~~~Gg----~~~k~~L~~i~kp~~i~S----~-~~hespIeSl~f~~~E-----~Llaags   89 (825)
T KOG0267|consen   27 HSAAVGCLKIRKS---SRSLVTGG----EDEKVNLWAIGKPNAITS----L-TGHESPIESLTFDTSE-----RLLAAGS   89 (825)
T ss_pred             hhhhhceeeeecc---ceeeccCC----CceeeccccccCCchhhe----e-eccCCcceeeecCcch-----hhhcccc
Confidence            4556777777555   78999999    789999977665444333    2 7899999999999998     8888887


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                       + +|++||++..+  .++++.+|.     ..+..+.|+| -+.++++|+.|+.+++||++...+...+.+|...+..+.
T Consensus        90 asgtiK~wDleeAk--~vrtLtgh~-----~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   90 ASGTIKVWDLEEAK--IVRTLTGHL-----LNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             cCCceeeeehhhhh--hhhhhhccc-----cCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence             4 99999999887  778999998     8999999999 899999999999999999998889999999999999999


Q ss_pred             ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      |+ +|.+++.++.|..+++||++.++.... +.  .|.+.+.++.|+| ..-+++.|+.|+. +++||+++ .+.+....
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-f~--~~e~~v~sle~hp-~e~Lla~Gs~d~t-v~f~dlet-fe~I~s~~  235 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKE-FK--SHEGKVQSLEFHP-LEVLLAPGSSDRT-VRFWDLET-FEVISSGK  235 (825)
T ss_pred             ecCCCceeeccCCcceeeeecccccccccc-cc--cccccccccccCc-hhhhhccCCCCce-eeeeccce-eEEeeccC
Confidence            99 688999999999999999998884433 33  3778999999998 8889999999999 99999986 44455555


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      .....|.+.+|+|++ +.+++|...
T Consensus       236 ~~~~~v~~~~fn~~~-~~~~~G~q~  259 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDG-KIVLSGEQI  259 (825)
T ss_pred             CccCCceeeeecCCc-eeeecCchh
Confidence            556789999999999 577777654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=7.3e-23  Score=158.41  Aligned_cols=255  Identities=19%  Similarity=0.219  Sum_probs=191.5

Q ss_pred             CceeeeeeccCCeeEEEeeec----CCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC---ceEEEEc
Q 040307            8 KPGVHTYMAQWPISTVAWSVR----HDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT---PTNIAFF   80 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~----~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~~   80 (339)
                      ......+.....|+..+|-+.    ..+..++|+.+    .+.-|++|+.-....+...  .. ..|.+.   ..+|+|+
T Consensus        95 ~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss----r~~PIh~wdaftG~lraSy--~~-ydh~de~taAhsL~Fs  167 (406)
T KOG2919|consen   95 KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS----RDQPIHLWDAFTGKLRASY--RA-YDHQDEYTAAHSLQFS  167 (406)
T ss_pred             cceeEEeccCCEEEEEEeeeccccCCCccceeeecc----ccCceeeeeccccccccch--hh-hhhHHhhhhheeEEec
Confidence            345566667788999999842    11277888888    7999999765544433322  22 455544   4689999


Q ss_pred             CCCCCCCCCeEEEeCC-cEEEEee-cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 040307           81 PSEETLNPDIVATSGD-SLRLWEI-HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL  158 (339)
Q Consensus        81 ~~~~~~~~~~la~~~~-~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~  158 (339)
                      |||     ..|.+|-. .|+++|+ +.+..........+...+..+.|.+++|+|.+...++.|+....+-||.-..+++
T Consensus       168 ~DG-----eqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p  242 (406)
T KOG2919|consen  168 PDG-----EQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP  242 (406)
T ss_pred             CCC-----CeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence            999     78888876 9999999 4443222322222323333478999999998888999999999999999888889


Q ss_pred             eeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307          159 ETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDSNK  235 (339)
Q Consensus       159 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~~~  235 (339)
                      +..+-+|.+.|+.++|+ +++.|++|++ |-.|..||+|..+.+....... .....-.-....| .+++|++|+.+|. 
T Consensus       243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~-  320 (406)
T KOG2919|consen  243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGS-  320 (406)
T ss_pred             eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCcc-
Confidence            99999999999999999 8999999875 6789999999876444333221 1112222344466 8899999999999 


Q ss_pred             EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      |++||++..+.+...+..|...++.++++|--+ ++|+++..
T Consensus       321 V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq  361 (406)
T KOG2919|consen  321 VRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ  361 (406)
T ss_pred             EEEEecCCCCCcccccccccccccceecCcccc-eeeeccCc
Confidence            999999998888888888999999999999985 88888754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.1e-22  Score=155.35  Aligned_cols=247  Identities=18%  Similarity=0.209  Sum_probs=183.4

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      .+.. -.|+.|++.|     .+||.|. + .|.|||+.+..  .-..+.+|.     .+|++++||+ +|+.|++++.|.
T Consensus        22 d~~~-a~~~~Fs~~G-----~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~-----~pi~sl~WS~-dgr~LltsS~D~   87 (405)
T KOG1273|consen   22 DNPL-AECCQFSRWG-----DYLAVGCANGRVVIYDFDTFR--IARMLSAHV-----RPITSLCWSR-DGRKLLTSSRDW   87 (405)
T ss_pred             cCCc-cceEEeccCc-----ceeeeeccCCcEEEEEccccc--hhhhhhccc-----cceeEEEecC-CCCEeeeecCCc
Confidence            3444 7899999999     8999997 4 99999999986  667788888     9999999998 999999999999


Q ss_pred             eEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC-CCeEEEEEecCCC
Q 040307          147 TCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD-CPLLRLEWNKADP  223 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~  223 (339)
                      .|.+||+..|.+++.+. ..++|+...|+  +.+..++.-.+..-.+-++..+.....-...+... ....+..|.+ .|
T Consensus        88 si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g  165 (405)
T KOG1273|consen   88 SIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RG  165 (405)
T ss_pred             eeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CC
Confidence            99999999999998886 67899999999  35555555556566677776543222211111111 1122335776 89


Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEecCC-CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                      +++++|...|. +.++|..+ .+++..++... ..|.++.++..| ..|+.-+.|..|+.|+++.-.. +   +....++
T Consensus       166 ~yIitGtsKGk-llv~~a~t-~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~-~---~r~~e~e  238 (405)
T KOG1273|consen  166 KYIITGTSKGK-LLVYDAET-LECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDD-E---GRDGEVE  238 (405)
T ss_pred             CEEEEecCcce-EEEEecch-heeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcc-c---CccCCcC
Confidence            99999999998 99999987 56777776655 789999999999 5999999999999999985431 0   0000111


Q ss_pred             cee-ee--cccceeEEEEecCCCCceEEEe-cCCeEEEEe
Q 040307          303 PEL-CY--QSMAEINVVRWSPLELDWIAIA-FVNKLQLLK  338 (339)
Q Consensus       303 ~~~-~~--~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~  338 (339)
                      |.. .+  -....=.+++|+.+|.++++++ ....++||.
T Consensus       239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence            211 11  1233456789999999888776 456688885

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-21  Score=164.54  Aligned_cols=239  Identities=14%  Similarity=0.216  Sum_probs=192.1

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      .+.+|.+++|+.+.     +.||.+- + .|.||++..+- -+...+.++.    .+.|.+++|+  ++..|++.+.+|.
T Consensus        24 ~Ps~I~slA~s~kS-----~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~----drsIE~L~W~--e~~RLFS~g~sg~   91 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKS-----NQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPE----DRSIESLAWA--EGGRLFSSGLSGS   91 (691)
T ss_pred             eccceEEEEEeccC-----CceeeeccCCcEEEEccCCCc-eeeEEEecCC----CCceeeEEEc--cCCeEEeecCCce
Confidence            46789999999998     7788775 4 99999998863 3455566654    2789999998  5778889999999


Q ss_pred             EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          148 CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                      |.-||+.+.+....+....+.|++++.+ .+..++.|+.||.+..++.......... .....++.+.+++|+| ++..+
T Consensus        92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRvLslsw~~-~~~~i  169 (691)
T KOG2048|consen   92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRVLSLSWNP-TGTKI  169 (691)
T ss_pred             EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceEEEEEecC-CccEE
Confidence            9999999999999998889999999999 5788999999997777777665532222 2223458999999998 89999


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEE-------ec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVL-------SK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS  298 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~-------~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  298 (339)
                      +.|+.||. |++||...+.. +...       .. ...-|+++.|-.++  .|++|..-|.|.+||...+.         
T Consensus       170 ~~Gs~Dg~-Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT---------  236 (691)
T KOG2048|consen  170 AGGSIDGV-IRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT---------  236 (691)
T ss_pred             EecccCce-EEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc---------
Confidence            99999999 99999988443 3311       11 22357889888886  79999999999999999988         


Q ss_pred             CcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                         ......-|.+.|.+++-.+++.++++++.|+.+.-|+
T Consensus       237 ---LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  237 ---LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             ---hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence               2335556899999999999998999999999876654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=3.1e-22  Score=168.93  Aligned_cols=277  Identities=13%  Similarity=0.131  Sum_probs=202.3

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      ++.....|+.++|-||   |..|+.+.     ++.+.|||.+..+....    + .+|.+.|+|++|+.+|     +.+|
T Consensus         8 r~~~~hci~d~afkPD---GsqL~lAA-----g~rlliyD~ndG~llqt----L-KgHKDtVycVAys~dG-----krFA   69 (1081)
T KOG1538|consen    8 RDKAEHCINDIAFKPD---GTQLILAA-----GSRLLVYDTSDGTLLQP----L-KGHKDTVYCVAYAKDG-----KRFA   69 (1081)
T ss_pred             hcccccchheeEECCC---CceEEEec-----CCEEEEEeCCCcccccc----c-ccccceEEEEEEccCC-----ceec
Confidence            3333458999999999   98888888     78999977665443333    2 7999999999999999     8999


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      +|+ | .|.+|+..-..  .+.  -.|.     ..|.||.|+| -.+.|++++- ...-+|...... +...+ ....+.
T Consensus        70 SG~aDK~VI~W~~klEG--~Lk--YSH~-----D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~  136 (1081)
T KOG1538|consen   70 SGSADKSVIIWTSKLEG--ILK--YSHN-----DAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRII  136 (1081)
T ss_pred             cCCCceeEEEecccccc--eee--eccC-----CeeeEeecCc-hHHHhhhcch-hhccccChhhhh-HHhhh-hheeEE
Confidence            998 6 99999865432  111  1344     8999999999 7788888875 345678765432 33332 345688


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC----CeEEEEeeCCCeEEEEecCCCC
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP----RFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      +.+|. +|.+|+.|-.+|+|.+-+-...+ ...+..+.+...+|.+++|+|..+    ..+++..-..+ +.+|.+.  +
T Consensus       137 ~CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~Ls--G  212 (1081)
T KOG1538|consen  137 CCSWTNDGQYLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQLS--G  212 (1081)
T ss_pred             EeeecCCCcEEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEec--c
Confidence            89999 99999999999999998544333 344444445678999999999554    36666666666 7777665  2


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                      +.+..-..-.-.-.++.+.|+|+ +++.|+.|+.+.+|--+.-.             .-..-.....|+.++..|+++++
T Consensus       213 ~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~Gvr-------------LGTvg~~D~WIWtV~~~PNsQ~v  278 (1081)
T KOG1538|consen  213 KQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRDGVR-------------LGTVGEQDSWIWTVQAKPNSQYV  278 (1081)
T ss_pred             eeecccccCCCCchhheeccCCc-EEEEccCCCceEEEeecCeE-------------EeeccccceeEEEEEEccCCceE
Confidence            33332233334567899999995 99999999999998554422             22333467789999999999999


Q ss_pred             EEEecCCeEEEEe
Q 040307          326 IAIAFVNKLQLLK  338 (339)
Q Consensus       326 ~~~~~d~~v~~w~  338 (339)
                      +.+|.||+|--|+
T Consensus       279 ~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  279 VVGCQDGTIACYN  291 (1081)
T ss_pred             EEEEccCeeehhh
Confidence            9999999997665

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=3.5e-21  Score=166.37  Aligned_cols=270  Identities=17%  Similarity=0.240  Sum_probs=196.0

Q ss_pred             CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCC
Q 040307           46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFS  123 (339)
Q Consensus        46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~  123 (339)
                      +.+.||++.... ....    .+.....|.++.|+|...    .++|.|..  .|.+||+......+...+..+ ...|.
T Consensus       222 ~~~~vW~~~~p~-~Pe~----~~~~~s~v~~~~f~p~~p----~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~-~~sh~  291 (555)
T KOG1587|consen  222 GVLLVWSLKNPN-TPEL----VLESPSEVTCLKFCPFDP----NLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL-EVSHS  291 (555)
T ss_pred             ceEEEEecCCCC-CceE----EEecCCceeEEEeccCCc----ceEEeeccCceEEEEEccCCCCCCCcccccc-cccCC
Confidence            478898877652 2222    356788999999999984    77777763  999999988763222222211 11233


Q ss_pred             CCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCee------eeeee------ccCCceeEEEec--CCcEEEEEeCCC
Q 040307          124 SAITSFDWAGFDT--RRVATCSVDTTCVIWDIDREIL------ETQLV------AHDREVYDISWG--GFNVFASVSGDC  187 (339)
Q Consensus       124 ~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~------~~~~~------~~~~~v~~~~~~--~~~~l~~~~~d~  187 (339)
                      .+++.+.|-. +.  .-|++++.||.|+.|+++.-..      .....      .....+++++|.  +.+.|+.|+.+|
T Consensus       292 ~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G  370 (555)
T KOG1587|consen  292 EPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG  370 (555)
T ss_pred             cCeEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence            8999999975 44  4499999999999998864321      00111      123467899998  688899999999


Q ss_pred             cEEEEECCCCccee-e----EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEE
Q 040307          188 SVRVFDLRDKERST-I----IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGIS  262 (339)
Q Consensus       188 ~i~i~d~~~~~~~~-~----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~  262 (339)
                      .|.-=.-...+... .    ......|.++|.++.++|....++++++ |-+ ++||.......|+..+..+...|++++
T Consensus       371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~-vriWs~~~~~~Pl~~~~~~~~~v~~va  448 (555)
T KOG1587|consen  371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWT-VRIWSEDVIASPLLSLDSSPDYVTDVA  448 (555)
T ss_pred             EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cce-eEeccccCCCCcchhhhhccceeeeeE
Confidence            88763322222111 1    1122237789999999997777887777 777 999998855788888888888899999


Q ss_pred             eccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          263 WAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |||..+.+++++..||.+.+||+....           ..|.. ..-+....+.+.|++.|+.++.+...|.+++|+|
T Consensus       449 WSptrpavF~~~d~~G~l~iWDLl~~~-----------~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  449 WSPTRPAVFATVDGDGNLDIWDLLQDD-----------EEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             EcCcCceEEEEEcCCCceehhhhhccc-----------cCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            999998899999999999999998876           23432 2233566788999999987777889999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-20  Score=140.97  Aligned_cols=281  Identities=14%  Similarity=0.138  Sum_probs=191.7

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-------CcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-------SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      ..|.+-+|+|.   +++|++|.    .+|.|.+..++.-.       ++...  .-+..|.++|+.++|..       ++
T Consensus        11 ~tvf~qa~sp~---~~~l~agn----~~G~iav~sl~sl~s~sa~~~gk~~i--v~eqahdgpiy~~~f~d-------~~   74 (325)
T KOG0649|consen   11 NTVFAQAISPS---KQYLFAGN----LFGDIAVLSLKSLDSGSAEPPGKLKI--VPEQAHDGPIYYLAFHD-------DF   74 (325)
T ss_pred             HHHHHHhhCCc---ceEEEEec----CCCeEEEEEehhhhccccCCCCCcce--eeccccCCCeeeeeeeh-------hh
Confidence            35777899999   99999999    79999998776311       11111  12368999999999983       57


Q ss_pred             EEEeCC-cEEEEeecCCcc----eeEE--EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307           91 VATSGD-SLRLWEIHDDRT----ELKS--LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV  163 (339)
Q Consensus        91 la~~~~-~i~iw~~~~~~~----~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  163 (339)
                      |.+|+| .|+=|..+....    +.+-  ...-+........|++|-..| ..+-++.++.|+.++-||+++|+..+.++
T Consensus        75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence            888887 888887765420    0110  011111111126789999998 55555555689999999999999999999


Q ss_pred             ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-------CCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307          164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-------VQDCPLLRLEWNKADPRFMATVGMDSNK  235 (339)
Q Consensus       164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~d~~~  235 (339)
                      +|++.|.++.-- ....+++|+.||++++||+++.+....+....       .-...|-+++-   +...|++|+.-.  
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgGp~--  228 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGGPK--  228 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCCCc--
Confidence            999999999885 56688999999999999999998766553321       11233445553   557777765443  


Q ss_pred             EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE
Q 040307          236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV  315 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  315 (339)
                      +.+|.++. .++...+.. ...+..+.|..+   .+++++..+.|.-|.+...-            +. .........++
T Consensus       229 lslwhLrs-se~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gvl------------~a-~ip~~s~~c~s  290 (325)
T KOG0649|consen  229 LSLWHLRS-SESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNGVL------------QA-NIPVESTACYS  290 (325)
T ss_pred             eeEEeccC-CCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeeccEE------------EE-eccCCccceee
Confidence            99999998 566666654 567888888765   57777777889999877633            11 11122223455


Q ss_pred             EEecCCCCceE-EEecCCeEEEEe
Q 040307          316 VRWSPLELDWI-AIAFVNKLQLLK  338 (339)
Q Consensus       316 ~~~~p~~~~l~-~~~~d~~v~~w~  338 (339)
                      ..|+..--.++ +++..+.+.+++
T Consensus       291 ~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  291 ASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             ecccCCceEEEEecccceeeeeee
Confidence            55554322344 466777777753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.8e-22  Score=157.89  Aligned_cols=246  Identities=15%  Similarity=0.166  Sum_probs=192.7

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT  141 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  141 (339)
                      .+|.+.|+++.|+.++     ++||+|+|  .+++|+++..-    .+++.....|    |...|.+++|.. .+..+.+
T Consensus        53 ~~H~GCiNAlqFS~N~-----~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~----H~SNIF~L~F~~-~N~~~~S  122 (609)
T KOG4227|consen   53 REHTGCINALQFSHND-----RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP----HRSNIFSLEFDL-ENRFLYS  122 (609)
T ss_pred             hhhccccceeeeccCC-----eEEeecCCcceeeeechHHHHhhcCCCCceeccCc----cccceEEEEEcc-CCeeEec
Confidence            5899999999999999     99999996  99999987531    1244333221    237999999996 8889999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeccC---CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307          142 CSVDTTCVIWDIDREILETQLVAHD---REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE  217 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  217 (339)
                      |..+++|.+.|+++.+.+..+. |.   +.|..+..+ -.+.|++.+.++.|.+||.+........+..........++-
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             CCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            9999999999999998887774 44   489999999 488999999999999999998875555454444556789999


Q ss_pred             EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307          218 WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR  291 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~  291 (339)
                      |+|....+|++.+..++ +.+||.+....++....+.      ...-.++.|+|.| ..|.+--....-.+||+-...  
T Consensus       202 F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R--  277 (609)
T KOG4227|consen  202 FHPETPALILVNSETGG-PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQR--  277 (609)
T ss_pred             ecCCCceeEEeccccCC-CCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeeccc--
Confidence            99999999999999999 9999999877666543332      2234688999999 477776666677788888865  


Q ss_pred             CCCCCCCCcccceeeeccc-------ceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          292 SGNGGPSGDVEPELCYQSM-------AEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                                .++....|.       ..|.+++|.-+.. +++++.+-.|++|++
T Consensus       278 ----------~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  278 ----------CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL  321 (609)
T ss_pred             ----------ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence                      234444442       3477889987764 788889999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=2.9e-21  Score=153.33  Aligned_cols=242  Identities=18%  Similarity=0.260  Sum_probs=180.5

Q ss_pred             CceEEEEcCCCCCCCCCeEEEe-----CCcEEEEeecC-Cc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           73 TPTNIAFFPSEETLNPDIVATS-----GDSLRLWEIHD-DR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~-----~~~i~iw~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .|+...|...--.-||+++|..     ++...+.-+.. ++ ....-.+.+|+     ++|..++|+|.+.+.||+|++|
T Consensus        29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt-----~~vLDi~w~PfnD~vIASgSeD  103 (472)
T KOG0303|consen   29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHT-----APVLDIDWCPFNDCVIASGSED  103 (472)
T ss_pred             eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCcc-----ccccccccCccCCceeecCCCC
Confidence            3556666544333455777652     22333333222 21 11223456777     9999999999999999999999


Q ss_pred             CeEEEEECCCC-------eeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307          146 TTCVIWDIDRE-------ILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL  216 (339)
Q Consensus       146 ~~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  216 (339)
                      .+|.||++..+       +++..+.+|...|--++|+|  .+.|++++.|.+|.+|++.+++....+.    |...|.++
T Consensus       104 ~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~  179 (472)
T KOG0303|consen  104 TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSM  179 (472)
T ss_pred             ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEE
Confidence            99999998654       35777889999999999994  8899999999999999999998555432    77899999


Q ss_pred             EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC-CeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCCCCC
Q 040307          217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG-SVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPGYRS  292 (339)
Q Consensus       217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~~~~  292 (339)
                      .|+. +|.+|++.+.|.. |+|||.+. ++.+..-.+|.+ .-..+.|-.++ .++.||-   .+..+.+||....+   
T Consensus       180 sfn~-dGs~l~TtckDKk-vRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~---  252 (472)
T KOG0303|consen  180 SFNR-DGSLLCTTCKDKK-VRVIDPRR-GTVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLE---  252 (472)
T ss_pred             Eecc-CCceeeeecccce-eEEEcCCC-CcEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCccccc---
Confidence            9996 9999999999999 99999998 667777777876 34567788888 4555544   56789999999887   


Q ss_pred             CCCCCCCcccceeee--cccceeEEEEecCCCCceEEE-ecCCeEEEEeC
Q 040307          293 GNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAI-AFVNKLQLLKV  339 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w~v  339 (339)
                               +|....  .....|.=-=|.|+...+..+ -.|+.||.|.+
T Consensus       253 ---------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  253 ---------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             ---------CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence                     454333  345556666678887755544 48999999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.2e-21  Score=155.89  Aligned_cols=243  Identities=14%  Similarity=0.166  Sum_probs=186.1

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCC
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDT  146 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~  146 (339)
                      ..+.|+++.|+|..     .+|.+++ | +++||.++......+..+.-..     .+|.+.+|.| +|. .+++++...
T Consensus       212 s~~~I~sv~FHp~~-----plllvaG~d~~lrifqvDGk~N~~lqS~~l~~-----fPi~~a~f~p-~G~~~i~~s~rrk  280 (514)
T KOG2055|consen  212 SHGGITSVQFHPTA-----PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-----FPIQKAEFAP-NGHSVIFTSGRRK  280 (514)
T ss_pred             CcCCceEEEecCCC-----ceEEEecCCCcEEEEEecCccChhheeeeecc-----CccceeeecC-CCceEEEecccce
Confidence            35689999999999     7777777 6 9999999877644555555544     7999999998 777 999999999


Q ss_pred             eEEEEECCCCeee--eeeeccC-CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          147 TCVIWDIDREILE--TQLVAHD-REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       147 ~v~i~d~~~~~~~--~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      .++.||+.+.+..  ....++. ..+.....+ ++++|+..+..|.|.+.-..+++....+..    .+.+..++|+. +
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~fsS-d  355 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----EGVVSDFTFSS-D  355 (514)
T ss_pred             EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee----ccEEeeEEEec-C
Confidence            9999999887632  2333443 345667777 799999999999999999998886665544    37899999996 8


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCe--eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSV--NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      ++.|++++.+|. |.+||++. ..++..+.. .+.|  ++++.++++ .+||+|+..|.|.|||..+...       ...
T Consensus       356 sk~l~~~~~~Ge-V~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-------s~~  424 (514)
T KOG2055|consen  356 SKELLASGGTGE-VYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-------STN  424 (514)
T ss_pred             CcEEEEEcCCce-EEEEecCC-cceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc-------cCC
Confidence            888888888887 99999998 466676664 3444  567778999 5999999999999999766430       001


Q ss_pred             ccce-eeecccceeEEEEecCCCCceEEEe--cCCeEEEEeC
Q 040307          301 VEPE-LCYQSMAEINVVRWSPLELDWIAIA--FVNKLQLLKV  339 (339)
Q Consensus       301 ~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~--~d~~v~~w~v  339 (339)
                      ..|+ .+..-...|+++.|+|+.+.|+.++  ..+.+|+-++
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv  466 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV  466 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence            1233 3334567899999999998665554  5677887654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.2e-20  Score=148.56  Aligned_cols=302  Identities=12%  Similarity=0.088  Sum_probs=213.6

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC--cccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS--DFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      .|.+.|.++.||.+   +++||+|+    .|-.+++|.++..--  ...........|...|.||+|....     ..|.
T Consensus        54 ~H~GCiNAlqFS~N---~~~L~SGG----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-----~~~~  121 (609)
T KOG4227|consen   54 EHTGCINALQFSHN---DRFLASGG----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-----RFLY  121 (609)
T ss_pred             hhccccceeeeccC---CeEEeecC----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-----eeEe
Confidence            46789999999999   99999999    899999988763211  1111113334677889999999888     8888


Q ss_pred             EeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eee--eeeccCC
Q 040307           93 TSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LET--QLVAHDR  167 (339)
Q Consensus        93 ~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~--~~~~~~~  167 (339)
                      +|+.  +|.+-|+++.+  .+..+....   ..+.|..+..+| ..+.|++.+.++.|.+||.+... ...  .+.....
T Consensus       122 SG~~~~~VI~HDiEt~q--si~V~~~~~---~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~  195 (609)
T KOG4227|consen  122 SGERWGTVIKHDIETKQ--SIYVANENN---NRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK  195 (609)
T ss_pred             cCCCcceeEeeecccce--eeeeecccC---cccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence            8885  99999999987  444443221   116899999999 68899999999999999997654 221  2223445


Q ss_pred             ceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeC----CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          168 EVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYEN----PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       168 ~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                      ....+.|+  ...+|++.+..+-+-+||.+.+..+...+..    +.....-.++.|+| +|..+++--.... -.+||+
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~-P~~~D~  273 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKC-PLYFDF  273 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCC-CEEeee
Confidence            67788898  4789999999999999999988754432221    11123346789998 7777766555555 678888


Q ss_pred             CCCCCceEEEecCC------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC--------CCCCCCCCCcc---cce
Q 040307          242 RFPTNPVVVLSKHE------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY--------RSGNGGPSGDV---EPE  304 (339)
Q Consensus       242 ~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~---~~~  304 (339)
                      -....++.++....      ..+.+++|--+.  -+++|+.+-.|++|.+.....        +.+++.|....   ...
T Consensus       274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             ecccceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence            76444444443111      256788888774  599999999999999976542        11111111111   122


Q ss_pred             eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .+.+|..-++.|.|+|....|++.+-.+.++||.
T Consensus       352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             EEecccccccceeecCCcceEeccchhhheeccc
Confidence            4568999999999999987677788999999995

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.3e-20  Score=157.19  Aligned_cols=238  Identities=16%  Similarity=0.182  Sum_probs=183.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|.+|...|.|     ..||+|++  +|+||.+.++.  ++.++.-.      +.|.+++|+|....-+++.+..
T Consensus       397 rGHtg~Vr~iSvdp~G-----~wlasGsdDGtvriWEi~TgR--cvr~~~~d------~~I~~vaw~P~~~~~vLAvA~~  463 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSG-----EWLASGSDDGTVRIWEIATGR--CVRTVQFD------SEIRSVAWNPLSDLCVLAVAVG  463 (733)
T ss_pred             eccCCeEEEEEecCCc-----ceeeecCCCCcEEEEEeecce--EEEEEeec------ceeEEEEecCCCCceeEEEEec
Confidence            5899999999999999     89999995  99999999998  77776654      5899999998433333333444


Q ss_pred             CeEEEEECCCC-------------------------------------eeeeeeeccCCceeEEEec-CCcEEEEEeCC-
Q 040307          146 TTCVIWDIDRE-------------------------------------ILETQLVAHDREVYDISWG-GFNVFASVSGD-  186 (339)
Q Consensus       146 ~~v~i~d~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-  186 (339)
                      ..+.|.+..-|                                     .-+...-.|...|..+.|+ .|++|++...+ 
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS  543 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence            44554433211                                     0112222477889999999 89999988764 


Q ss_pred             --CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307          187 --CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA  264 (339)
Q Consensus       187 --~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  264 (339)
                        ..|.|.++........+..   ..+.+.++.|+| ...+|++++...  |+|||+.. +..+..+......|.+++.+
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~k---skG~vq~v~FHP-s~p~lfVaTq~~--vRiYdL~k-qelvKkL~tg~kwiS~msih  616 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRK---SKGLVQRVKFHP-SKPYLFVATQRS--VRIYDLSK-QELVKKLLTGSKWISSMSIH  616 (733)
T ss_pred             CcceEEEEecccccccCchhh---cCCceeEEEecC-CCceEEEEeccc--eEEEehhH-HHHHHHHhcCCeeeeeeeec
Confidence              5688999987764433323   357899999999 667777766654  99999987 66677777777899999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          265 PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       265 p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      |.|. -|+.|+.|+.+..||+....            .|. ....|...+++|+||+.-+.+++++.|+++.|+.
T Consensus       617 p~GD-nli~gs~d~k~~WfDldlss------------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  617 PNGD-NLILGSYDKKMCWFDLDLSS------------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CCCC-eEEEecCCCeeEEEEcccCc------------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            9995 88899999999999999876            344 5667889999999999998777788889998875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=3.4e-18  Score=149.21  Aligned_cols=286  Identities=20%  Similarity=0.279  Sum_probs=212.4

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEE-cCCCCCCCCC-e
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAF-FPSEETLNPD-I   90 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~-~   90 (339)
                      ...+...+.++.|.+.   +..++.++    .++.+.+|++........   .+...+...+..+.+ ++++     . +
T Consensus        61 ~~~~~~~i~~~~~~~~---~~~~~~~~----~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~  125 (466)
T COG2319          61 LRGHEDSITSIAFSPD---GELLLSGS----SDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDG-----NSI  125 (466)
T ss_pred             eeeccceEEEEEECCC---CcEEEEec----CCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCc-----ceE
Confidence            3457789999999999   99999888    699999988776541222   221112246777777 7777     5 4


Q ss_pred             EEEeC--C-cEEEEeecC-CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeeecc
Q 040307           91 VATSG--D-SLRLWEIHD-DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        91 la~~~--~-~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~  165 (339)
                      ++..+  + .+.+|+... ..  ....+..|.     ..|..+.|+| ++..+++++. |+.+++|++..+..+..+..|
T Consensus       126 ~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (466)
T COG2319         126 LLASSSLDGTVKLWDLSTPGK--LIRTLEGHS-----ESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH  197 (466)
T ss_pred             EeccCCCCccEEEEEecCCCe--EEEEEecCc-----ccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccC
Confidence            55433  4 999999987 43  677778887     8899999998 8888888885 999999999988888888889


Q ss_pred             CCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          166 DREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       166 ~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      ...+.+++|+ ++. .+++++.|+.|++||.+...........  |.... ...|+| ++.++++++.++. +++|+++.
T Consensus       198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~d~~-~~~~~~~~  272 (466)
T COG2319         198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG--HSDSV-VSSFSP-DGSLLASGSSDGT-IRLWDLRS  272 (466)
T ss_pred             CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC--CCcce-eEeECC-CCCEEEEecCCCc-EEEeeecC
Confidence            9999999999 555 5555599999999988855533322222  33343 228888 6688889999999 99999987


Q ss_pred             CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee--ecccceeEEEEecCC
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC--YQSMAEINVVRWSPL  321 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~  321 (339)
                      ....+..+..|...+.++.|+|++ ..+++++.|+.+.+|+.....            .....  ..|...+..+.|.++
T Consensus       273 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  339 (466)
T COG2319         273 SSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK------------LLSSLTLKGHEGPVSSLSFSPD  339 (466)
T ss_pred             CCcEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc------------eEEEeeecccCCceEEEEECCC
Confidence            554344456788999999999987 477778888899999887766            12222  356667999999433


Q ss_pred             CCceEEE-ecCCeEEEEeC
Q 040307          322 ELDWIAI-AFVNKLQLLKV  339 (339)
Q Consensus       322 ~~~l~~~-~~d~~v~~w~v  339 (339)
                      +..++.+ ..|+.+++|++
T Consensus       340 ~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         340 GSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             CCEEEEeecCCCcEEeeec
Confidence            2345554 57888888864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.6e-20  Score=143.98  Aligned_cols=281  Identities=15%  Similarity=0.203  Sum_probs=190.7

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~  109 (339)
                      ...+|++.    ..|.|+||++..  +....  .+ .+++..++.+.|....   .|..+.+|+ | +|++||++.....
T Consensus        40 e~~vav~l----Sngsv~lyd~~t--g~~l~--~f-k~~~~~~N~vrf~~~d---s~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   40 ETAVAVSL----SNGSVRLYDKGT--GQLLE--EF-KGPPATTNGVRFISCD---SPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             ceeEEEEe----cCCeEEEEeccc--hhhhh--ee-cCCCCcccceEEecCC---CCCeeEEeccCCeEEEEEeecchhh
Confidence            35688887    799999987776  33332  23 5788889999998753   136666665 6 9999999987633


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----CCeEEEEECCCCee-eeee-eccCCceeEEEec--CCcEEE
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV----DTTCVIWDIDREIL-ETQL-VAHDREVYDISWG--GFNVFA  181 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~-~~~~-~~~~~~v~~~~~~--~~~~l~  181 (339)
                      .......+.    ..+..+++.+- ..+.+++|..    +-.|.+||++..+. +..+ ..|.+.|++++|+  +.++|+
T Consensus       108 a~~~~~~~~----~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  108 ARISWTQQS----GTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             hheeccCCC----CCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence            444444443    14677888774 6788888764    67899999987764 5554 5799999999999  689999


Q ss_pred             EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC------
Q 040307          182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE------  255 (339)
Q Consensus       182 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~------  255 (339)
                      +|+.||-|.+||+........+...-.+...|..+.|....-+.|.+-+...+ ..+|++.... +...+....      
T Consensus       183 SGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~-~~~~~~~~~~~~~d~  260 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGS-EETWLENPDVSADDL  260 (376)
T ss_pred             eecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCC-hhhcccCccchhhhH
Confidence            99999999999998875333333222355779999998633346777788888 9999998743 333332110      


Q ss_pred             ------CCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCCCCCCCCCCCCCcccce-eee-cccceeEEEEecCCCCceE
Q 040307          256 ------GSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY-QSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       256 ------~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~p~~~~l~  326 (339)
                            ..+... .+|.+...++.++. -|...++-+.....       .....+. ... +|..-|.++.|...+..++
T Consensus       261 r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s-------~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~  332 (376)
T KOG1188|consen  261 RKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSS-------GSLLTEPAILQGGHEEIVRDILFDVKNDVLY  332 (376)
T ss_pred             Hhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeeccc-------ccccCccccccCCcHHHHHHHhhhcccceee
Confidence                  011111 22433345555554 56666666553220       0011222 333 4777889999998888888


Q ss_pred             EEecCCeEEEEeC
Q 040307          327 AIAFVNKLQLLKV  339 (339)
Q Consensus       327 ~~~~d~~v~~w~v  339 (339)
                      +++.||.|.+|++
T Consensus       333 TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  333 TGGEDGLLQAWKV  345 (376)
T ss_pred             ccCCCceEEEEec
Confidence            9999999999983

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.5e-21  Score=148.02  Aligned_cols=192  Identities=15%  Similarity=0.201  Sum_probs=157.1

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307          137 RRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL  213 (339)
Q Consensus       137 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  213 (339)
                      ..+|++-..|.|++||..+++.+..++++...++.++|.   ..+.+.+|+.||+|++||+|.......+........+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            568888899999999999999999999999999999998   26789999999999999999987666655543334577


Q ss_pred             EEEEEecCCCCeEEEEeeCCC---eEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          214 LRLEWNKADPRFMATVGMDSN---KVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~~d~~---~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+++.+- .++++++|..--.   .+.+||+|...+++.. ...|...|+++.|+|..+.+|++||.||.|.|||++...
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            7888764 7778887754322   4999999997775554 457999999999999999999999999999999998876


Q ss_pred             CCCCCCCCCCcccce-eeecccceeEEEEecCCC-CceEEEecCCeEEEEeC
Q 040307          290 YRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLE-LDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~-~~l~~~~~d~~v~~w~v  339 (339)
                                ...++ ....+...|..+.|..++ ..+.+.+...+..+|++
T Consensus       200 ----------EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  200 ----------EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             ----------chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence                      12233 556788889999999987 23778889999999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.87  E-value=2.8e-19  Score=141.08  Aligned_cols=234  Identities=14%  Similarity=0.181  Sum_probs=174.2

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--CeE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--TTC  148 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~v  148 (339)
                      ..++.+.|+.+.     .+|..|+. ..++|+.+..+. +.....+ .     ..|..+-|+.   .++|..+.+  ..+
T Consensus         6 ~ti~~~~~Nqd~-----~~lsvGs~~Gyk~~~~~~~~k-~~~~~~~-~-----~~IvEmLFSS---SLvaiV~~~qpr~L   70 (391)
T KOG2110|consen    6 PTINFIGFNQDS-----TLLSVGSKDGYKIFSCSPFEK-CFSKDTE-G-----VSIVEMLFSS---SLVAIVSIKQPRKL   70 (391)
T ss_pred             cceeeeeeccce-----eEEEccCCCceeEEecCchHH-hhcccCC-C-----eEEEEeeccc---ceeEEEecCCCceE
Confidence            456677799888     78888885 889998876541 1111111 1     4566777764   566665554  459


Q ss_pred             EEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          149 VIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      ++++.+.+..+..+. ...+|.++.++ .+.|+++=.+ .|+|||++..+....+...+.+...+..+.+++ .+.++|.
T Consensus        71 kv~~~Kk~~~ICe~~-fpt~IL~VrmN-r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAy  146 (391)
T KOG2110|consen   71 KVVHFKKKTTICEIF-FPTSILAVRMN-RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAY  146 (391)
T ss_pred             EEEEcccCceEEEEe-cCCceEEEEEc-cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEe
Confidence            999998888777775 56789999998 4445555444 499999999997777666644555566666664 5567765


Q ss_pred             -EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc-EEEEEecCCCCCCCCCCCCCcccceee
Q 040307          229 -VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR-ALIWEVVGPGYRSGNGGPSGDVEPELC  306 (339)
Q Consensus       229 -~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~  306 (339)
                       ++.+.+.|.+||+.+ -+++..+..|++.+.+++|+|+| .+|||+++.|+ |||+.+..++             .+..
T Consensus       147 p~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~-------------kl~e  211 (391)
T KOG2110|consen  147 PGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQ-------------KLYE  211 (391)
T ss_pred             cCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCcc-------------Eeee
Confidence             444444599999987 67889999999999999999999 69999999986 8999998887             2222


Q ss_pred             e---cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          307 Y---QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       307 ~---~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +   .-...|.+++|+|++++|.+++..++|++|++
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence            2   12567999999999998888999999999985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=5.5e-21  Score=158.23  Aligned_cols=244  Identities=14%  Similarity=0.218  Sum_probs=184.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCC------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDD------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV  139 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  139 (339)
                      ..|.+.|..++|.|..     ..|++++ + .+.+|++...      ..+++.+|.+|.     ++|.|+++.+ +++.+
T Consensus       291 ~s~~d~ir~l~~~~se-----p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-----gPVl~v~v~~-n~~~~  359 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSE-----PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-----GPVLCVVVPS-NGEHC  359 (577)
T ss_pred             ecchhhhhhhhcCCCC-----CeEEEeccccchhhhhhcccCCccccceeeeEEEeccc-----CceEEEEecC-CceEE
Confidence            4688899999999998     7888888 4 9999999332      267889999999     9999999997 99999


Q ss_pred             EEEeCCCeEEEEECCCC----------eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC
Q 040307          140 ATCSVDTTCVIWDIDRE----------ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV  208 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~----------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  208 (339)
                      ++|+.||+|+.|++...          .....+.+|.+.|+.++++ ..+.|++++.||++++|+......  ..+..+.
T Consensus       360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~  437 (577)
T KOG0642|consen  360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPK  437 (577)
T ss_pred             EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCcc
Confidence            99999999999966421          1334567999999999999 677899999999999999887765  2233322


Q ss_pred             CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec-------CCCCeeEEEeccCCCCeEEEEeCCCcEE
Q 040307          209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-------HEGSVNGISWAPLYGRRLCSVADDSRAL  281 (339)
Q Consensus       209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~~dg~v~  281 (339)
                      ..+...++.+-......+++...-+. -.++++.. ...+..+..       ....+..+.++|.++ +.+++..|+.|+
T Consensus       438 e~g~Plsvd~~ss~~a~~~~s~~~~~-~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir  514 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRPAHSLASFRFGY-TSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIR  514 (577)
T ss_pred             ccCCcceEeeccchhHhhhhhccccc-ccchhhhh-hhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCcee
Confidence            33455677775322233333333332 33444433 111222211       123578899999995 999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          282 IWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       282 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++|...+.            .......|...++++++.|+|.+|++++.|+.+++|++
T Consensus       515 ~~dn~~~~------------~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  515 FFDNKTGK------------ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             cccccccc------------cchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            99999988            23356678999999999999999999999999999974

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.87  E-value=1.8e-19  Score=139.65  Aligned_cols=238  Identities=18%  Similarity=0.221  Sum_probs=179.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ...+|+|.+|++|   +..+|++.    ..+.|.||.....+ .....+++ ..|...|+++.|+|..     ..|++|+
T Consensus         9 ~~~pitchAwn~d---rt~iAv~~----~~~evhiy~~~~~~-~w~~~htl-s~Hd~~vtgvdWap~s-----nrIvtcs   74 (361)
T KOG1523|consen    9 LLEPITCHAWNSD---RTQIAVSP----NNHEVHIYSMLGAD-LWEPAHTL-SEHDKIVTGVDWAPKS-----NRIVTCS   74 (361)
T ss_pred             ccCceeeeeecCC---CceEEecc----CCceEEEEEecCCC-Cceeceeh-hhhCcceeEEeecCCC-----CceeEcc
Confidence            4689999999999   99999999    68899998776554 12222244 6899999999999999     6778877


Q ss_pred             -C-cEEEEee-cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee----eeeccCCc
Q 040307           96 -D-SLRLWEI-HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET----QLVAHDRE  168 (339)
Q Consensus        96 -~-~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~  168 (339)
                       | .-++|.. +.+++++...+..+.     .+++++.|+| .++.||+|+.-..|.||-.+..+.-.    .-+.+.+.
T Consensus        75 ~drnayVw~~~~~~~WkptlvLlRiN-----rAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt  148 (361)
T KOG1523|consen   75 HDRNAYVWTQPSGGTWKPTLVLLRIN-----RAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST  148 (361)
T ss_pred             CCCCccccccCCCCeeccceeEEEec-----cceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence             5 9999999 666677777777766     8999999999 99999999999999999887655321    12346778


Q ss_pred             eeEEEec-CCcEEEEEeCCCcEEEEECCCC-----cce----------eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          169 VYDISWG-GFNVFASVSGDCSVRVFDLRDK-----ERS----------TIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-----~~~----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      |++++|+ ++-+|++|+.|+.+++|..--.     ..+          ..+.+.....+.+..+.|+| +|..|+-.+.|
T Consensus       149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hd  227 (361)
T KOG1523|consen  149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHD  227 (361)
T ss_pred             eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCC
Confidence            9999999 6778899999999999864211     100          01111112457899999998 99999999999


Q ss_pred             CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      .. +.+-|...+.+.+..+....-+..++.|-.+.  .++.++.|
T Consensus       228 s~-v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~  269 (361)
T KOG1523|consen  228 ST-VSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYD  269 (361)
T ss_pred             Cc-eEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCC
Confidence            99 99999877554445544444677777776653  34455544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.9e-19  Score=159.34  Aligned_cols=295  Identities=15%  Similarity=0.216  Sum_probs=200.9

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-   96 (339)
                      +...+.|+|-   ...++++.    ....|+||||.....--..  .........|+.+.+-.+.+.   .++.+|+ | 
T Consensus      1066 ~pk~~~~hpf---~p~i~~ad----~r~~i~vwd~e~~~~l~~F--~n~~~~~t~Vs~l~liNe~D~---aLlLtas~dG 1133 (1387)
T KOG1517|consen 1066 PPKTLKFHPF---EPQIAAAD----DRERIRVWDWEKGRLLNGF--DNGAFPDTRVSDLELINEQDD---ALLLTASSDG 1133 (1387)
T ss_pred             CCceeeecCC---CceeEEcC----CcceEEEEecccCceeccc--cCCCCCCCccceeeeecccch---hheeeeccCc
Confidence            5778899999   88888888    6889999998865432111  111234567889988665432   5666666 5 


Q ss_pred             cEEEEeecCC---cceeEEEeec---CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCce
Q 040307           97 SLRLWEIHDD---RTELKSLLNS---NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREV  169 (339)
Q Consensus        97 ~i~iw~~~~~---~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v  169 (339)
                      .|+||+--..   +.+.+....+   +..... +.=.-++|.. ...+|++++.-..|+|||......+..+. +....|
T Consensus      1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r-~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~v 1211 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGAR-GTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLV 1211 (1387)
T ss_pred             eEEEecccccccCCceeEEeeccccccCccCC-CCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccc
Confidence            9999975332   2223333222   111111 1114567875 45556666668899999998877776664 334567


Q ss_pred             eEEEec--CCcEEEEEeCCCcEEEEECCCCcc--eeeEEeCCCCCCC--eEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          170 YDISWG--GFNVFASVSGDCSVRVFDLRDKER--STIIYENPVQDCP--LLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       170 ~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      +++.-+  .++.+++|..||.|++||.|....  ....+..  |...  |..+.+.+..-..|++|+.+|. |++||+|.
T Consensus      1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~--h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~ 1288 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE--HNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRM 1288 (1387)
T ss_pred             eeecccccCCceEEEeecCCceEEeecccCCccccceeecc--cCCcccceeEEeecCCCcceeeeccCCe-EEEEeccc
Confidence            777766  579999999999999999998764  3333333  4444  9999998744446999999999 99999998


Q ss_pred             C-CCceEEEecCC--C-CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307          244 P-TNPVVVLSKHE--G-SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS  319 (339)
Q Consensus       244 ~-~~~~~~~~~~~--~-~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  319 (339)
                      . .....+...|-  + .++++..+++.+ .+|+|+. +.|+||++........      ...+...-...+.+.+++||
T Consensus      1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~------k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNII------KYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred             CcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccc------ccCcccccCcCCCcceeeec
Confidence            3 22223333333  3 599999999995 9999998 9999999988661000      00111222234567999999


Q ss_pred             CCCCceEEEecCCeEEEEe
Q 040307          320 PLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       320 p~~~~l~~~~~d~~v~~w~  338 (339)
                      |....+++++.|++|.||.
T Consensus      1361 P~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1361 PHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             chhHhhhhccCCceEEEee
Confidence            9988778888999999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=1.7e-19  Score=156.05  Aligned_cols=268  Identities=16%  Similarity=0.200  Sum_probs=194.2

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccc-eeeEeecCCCCceEEEEcCCCCCC
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA-DNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      ......+..+.+|.+++|+|.  ...+||.|.    ++|.|.+||.......... .......|..+|..+.|..+..  
T Consensus       233 ~~Pe~~~~~~s~v~~~~f~p~--~p~ll~gG~----y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~--  304 (555)
T KOG1587|consen  233 NTPELVLESPSEVTCLKFCPF--DPNLLAGGC----YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH--  304 (555)
T ss_pred             CCceEEEecCCceeEEEeccC--CcceEEeec----cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC--
Confidence            345566777889999999998  467777788    8999999998866653221 1122357999999999988663  


Q ss_pred             CCCeEEEeCC-cEEEEeecCCcc----eeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---
Q 040307           87 NPDIVATSGD-SLRLWEIHDDRT----ELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---  157 (339)
Q Consensus        87 ~~~~la~~~~-~i~iw~~~~~~~----~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---  157 (339)
                      +.+++.+++| .|..|+++.-..    .+..... .+........+++++|.|.+...++.|++.|.|..-+....+   
T Consensus       305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~  384 (555)
T KOG1587|consen  305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP  384 (555)
T ss_pred             CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence            1246666667 999998765431    0111111 011112236789999999889999999999999874432221   


Q ss_pred             -----eeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          158 -----LETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       158 -----~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                           ....+..|.++|+.+.++|  ...|++++ |-+++||.......+...+..  +...+++++|+|.....++++.
T Consensus       385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             cccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEc
Confidence                 1234456889999999994  45555555 999999998844434443433  4456999999998888999999


Q ss_pred             eCCCeEEEEecCCC-CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          231 MDSNKVVVLDIRFP-TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       231 ~d~~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      .+|. +.+||+... ..|+.+...+....+.+.|++.| ++|+.|...|.+.+|++...
T Consensus       462 ~~G~-l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  462 GDGN-LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CCCc-eehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence            9999 999998753 35666766666777889999998 69999999999999999653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=1.8e-20  Score=157.54  Aligned_cols=244  Identities=20%  Similarity=0.292  Sum_probs=182.8

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc--
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR--  107 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~--  107 (339)
                      ..++|+--  .+..|.|-||+++..+...--... ..-....|+.+.|.|...    ..||.++|  .|++|.+..+.  
T Consensus       591 ~~rvAVPL--~g~gG~iai~el~~PGrLPDgv~p-~l~Ngt~vtDl~WdPFD~----~rLAVa~ddg~i~lWr~~a~gl~  663 (1012)
T KOG1445|consen  591 NKRVAVPL--AGSGGVIAIYELNEPGRLPDGVMP-GLFNGTLVTDLHWDPFDD----ERLAVATDDGQINLWRLTANGLP  663 (1012)
T ss_pred             cceEEEEe--cCCCceEEEEEcCCCCCCCccccc-ccccCceeeecccCCCCh----HHeeecccCceEEEEEeccCCCC
Confidence            55665522  114799999998866543322111 123456799999999875    77888875  99999997653  


Q ss_pred             ---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEE
Q 040307          108 ---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV  183 (339)
Q Consensus       108 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~  183 (339)
                         ..+...+..|.     ..|+.+.|+|.-.+.|++++.|-+|++||+.+.+....+.+|.+.|.+++|+ +|..+++.
T Consensus       664 e~~~tPe~~lt~h~-----eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtV  738 (1012)
T KOG1445|consen  664 ENEMTPEKILTIHG-----EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATV  738 (1012)
T ss_pred             cccCCcceeeeccc-----ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeee
Confidence               34566677777     8999999999888999999999999999999999889999999999999999 89999999


Q ss_pred             eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC---eEEEEecCCCC-CceEEEecCCC-Ce
Q 040307          184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN---KVVVLDIRFPT-NPVVVLSKHEG-SV  258 (339)
Q Consensus       184 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~---~i~i~d~~~~~-~~~~~~~~~~~-~v  258 (339)
                      +.||+|++|+.++.+.+..-...+.. ..-..+.|.- +|+++++.+.|..   +|.+||..... .++.+..-... .+
T Consensus       739 cKDg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~  816 (1012)
T KOG1445|consen  739 CKDGTLRVYEPRSREQPVYEGKGPVG-TRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP  816 (1012)
T ss_pred             ecCceEEEeCCCCCCCccccCCCCcc-CcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc
Confidence            99999999999998755543333222 3456788885 8999988887764   58899877643 34444332111 12


Q ss_pred             eEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          259 NGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       259 ~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .--.+.+|...++++|-.|..|.+|.+-...
T Consensus       817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  817 LVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ccccccCCCceEEEecCCCceEEEEEecCCC
Confidence            2234556766788899999999999998876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=6.8e-18  Score=142.30  Aligned_cols=264  Identities=13%  Similarity=0.079  Sum_probs=169.8

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--C-cEEEEeecC-CcceeEEEeecCCC
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--D-SLRLWEIHD-DRTELKSLLNSNKT  119 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i~iw~~~~-~~~~~~~~~~~~~~  119 (339)
                      .++.|.+|+++.. +.......  ..+.+.+..++++|++     ++|++++  + .|.+|+++. +.......... . 
T Consensus        10 ~~~~I~~~~~~~~-g~l~~~~~--~~~~~~~~~l~~spd~-----~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~-   79 (330)
T PRK11028         10 ESQQIHVWNLNHE-GALTLLQV--VDVPGQVQPMVISPDK-----RHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P-   79 (330)
T ss_pred             CCCCEEEEEECCC-CceeeeeE--EecCCCCccEEECCCC-----CEEEEEECCCCcEEEEEECCCCceEEeeeecC-C-
Confidence            5899999998643 33332112  3445678899999999     6665553  3 899999973 33222222221 1 


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCe----eeeeeeccCCceeEEEec-CCcEEE-EEeCCCcEEEE
Q 040307          120 SEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREI----LETQLVAHDREVYDISWG-GFNVFA-SVSGDCSVRVF  192 (339)
Q Consensus       120 ~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~  192 (339)
                          .....++++| ++++|++++. ++.|.+|++++..    .+..+. +.....+++++ ++++++ +...++.|.+|
T Consensus        80 ----~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~  153 (330)
T PRK11028         80 ----GSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLF  153 (330)
T ss_pred             ----CCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence                3456899998 8887777764 8899999996432    222222 22345778888 666665 45567999999


Q ss_pred             ECCCCcceee----EEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCC-CC--ceEEEecC------CCCe
Q 040307          193 DLRDKERSTI----IYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFP-TN--PVVVLSKH------EGSV  258 (339)
Q Consensus       193 d~~~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~-~~--~~~~~~~~------~~~v  258 (339)
                      |+.+......    ....+ .......++|+| ++++++++.. ++. |.+||+... +.  .+..+..+      ....
T Consensus       154 d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        154 TLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EECCCCcccccCCCceecC-CCCCCceEEECC-CCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence            9986432211    11111 123467899998 8898888877 555 999999742 11  22223221      1123


Q ss_pred             eEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeecc---cceeEEEEecCCCCceEEEe-cCCe
Q 040307          259 NGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS---MAEINVVRWSPLELDWIAIA-FVNK  333 (339)
Q Consensus       259 ~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~l~~~~-~d~~  333 (339)
                      ..+.++|++ ++|+++. .++.|.+|++....            ......++   ......+.++|+|++|+++. .+++
T Consensus       231 ~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~------------~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~  297 (330)
T PRK11028        231 ADIHITPDG-RHLYACDRTASLISVFSVSEDG------------SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHH  297 (330)
T ss_pred             eeEEECCCC-CEEEEecCCCCeEEEEEEeCCC------------CeEEEeEEEeccccCCceEECCCCCEEEEEEccCCc
Confidence            468999999 5777765 57899999997654            11212221   23456899999999988766 5899


Q ss_pred             EEEEeC
Q 040307          334 LQLLKV  339 (339)
Q Consensus       334 v~~w~v  339 (339)
                      |.+|++
T Consensus       298 v~v~~~  303 (330)
T PRK11028        298 ISVYEI  303 (330)
T ss_pred             EEEEEE
Confidence            999974

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=6e-20  Score=138.55  Aligned_cols=250  Identities=17%  Similarity=0.222  Sum_probs=180.7

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .+...|+++.|-.+   +. |..|.    ..|.|++|.++.+......    ...+...|+.+.--|++     .++.-|
T Consensus        12 p~~~~v~s~~fqa~---~r-L~sg~----~~G~V~~w~lqt~r~~~~~----r~~g~~~it~lq~~p~d-----~l~tqg   74 (323)
T KOG0322|consen   12 PHSSSVTSVLFQAN---ER-LMSGL----SVGIVKMWVLQTERDLPLI----RLFGRLFITNLQSIPND-----SLDTQG   74 (323)
T ss_pred             cccchheehhhccc---hh-hhccc----ccceEEEEEeecCccchhh----hhhccceeeceeecCCc-----chhhcC
Confidence            56788999998877   54 88888    7999999998876655544    34677889999988887     565556


Q ss_pred             CC-cEEEEeecCCcceeEEEeec-------------------------------C---------------CCccCCCCEE
Q 040307           95 GD-SLRLWEIHDDRTELKSLLNS-------------------------------N---------------KTSEFSSAIT  127 (339)
Q Consensus        95 ~~-~i~iw~~~~~~~~~~~~~~~-------------------------------~---------------~~~~~~~~i~  127 (339)
                      -| .+.+|++....+..+..+..                               |               +.....+.++
T Consensus        75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm  154 (323)
T KOG0322|consen   75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM  154 (323)
T ss_pred             CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence            56 88888877532111111000                               0               0112234566


Q ss_pred             EEEEcCCCC--CEEEEEeCCCeEEEEECCCCe----------eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEEC
Q 040307          128 SFDWAGFDT--RRVATCSVDTTCVIWDIDREI----------LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDL  194 (339)
Q Consensus       128 ~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~----------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~  194 (339)
                      +..|.-..+  -++++|.++|.+-+||+.++.          ....+..|..+|.++.|. --+.=++++.+..+..|.+
T Consensus       155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl  234 (323)
T KOG0322|consen  155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSL  234 (323)
T ss_pred             eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeee
Confidence            666532222  357788899999999999873          333445688999999998 3444567788888889888


Q ss_pred             CCCc-ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307          195 RDKE-RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCS  273 (339)
Q Consensus       195 ~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  273 (339)
                      .... ....-.+.......+..+..-| +++++|+++-|++ |+||..++ ..|+..+..|.+.|++++|+|+. .++|+
T Consensus       235 ~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~R-iRVyswrt-l~pLAVLkyHsagvn~vAfspd~-~lmAa  310 (323)
T KOG0322|consen  235 NHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHR-IRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDC-ELMAA  310 (323)
T ss_pred             ccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCc-EEEEEecc-CCchhhhhhhhcceeEEEeCCCC-chhhh
Confidence            6542 1111111111234677888888 9999999999999 99999998 77899999999999999999997 49999


Q ss_pred             EeCCCcEEEEEe
Q 040307          274 VADDSRALIWEV  285 (339)
Q Consensus       274 ~~~dg~v~iwd~  285 (339)
                      ++.|++|.+|++
T Consensus       311 askD~rISLWkL  322 (323)
T KOG0322|consen  311 ASKDARISLWKL  322 (323)
T ss_pred             ccCCceEEeeec
Confidence            999999999986

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3e-19  Score=143.24  Aligned_cols=195  Identities=17%  Similarity=0.165  Sum_probs=149.6

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEe
Q 040307          127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYE  205 (339)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  205 (339)
                      ..++|++ ++..+++++.||++++|+..+...+.....|...|.++.|+ ++..|++.+.| ..++|+.+++........
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            5789996 99999999999999999987777777777899999999999 89999999999 899999999854333221


Q ss_pred             CCCCCCCeEEEEEecCCC---C-eEEEEeeCCCeEEEEecCCCCC----ceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          206 NPVQDCPLLRLEWNKADP---R-FMATVGMDSNKVVVLDIRFPTN----PVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       206 ~~~~~~~v~~~~~~p~~~---~-~l~~~~~d~~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                       ...+.....+.|+. ++   . ++++.-..+..|+.||+.....    +..+.......|.+++.+++| ++++.|+.|
T Consensus       226 -~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT~d  302 (398)
T KOG0771|consen  226 -FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGTMD  302 (398)
T ss_pred             -cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEeccC
Confidence             22345567788875 43   2 3333333333377776654222    223333334589999999999 699999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          278 SRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       278 g~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |.|.|++....+             ..  ....|...|+.+.|+|+.+++...+.|...+|..|
T Consensus       303 GsVai~~~~~lq-------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAIYDAKSLQ-------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEEEEeceee-------------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            999999999877             33  33468889999999999999999999988877653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.6e-20  Score=155.50  Aligned_cols=251  Identities=14%  Similarity=0.146  Sum_probs=184.4

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCC----CCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNP----ETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~----~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      .|.+.|++++|.|.   ...|++++    .+|.|.+|+++.    ....+.....+ .+|.++|.|++..+++     ..
T Consensus       292 s~~d~ir~l~~~~s---ep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~-----~~  358 (577)
T KOG0642|consen  292 SHDDCIRALAFHPS---EPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNG-----EH  358 (577)
T ss_pred             cchhhhhhhhcCCC---CCeEEEec----cccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCc-----eE
Confidence            35689999999999   88999999    899999999832    12233332344 5899999999999999     78


Q ss_pred             EEEeC-C-cEEEEeecCCc--------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307           91 VATSG-D-SLRLWEIHDDR--------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        91 la~~~-~-~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                      +.+|+ | +|+.|++....        ......+.||.     ..|+.+++|+ ....|++++.||++++|+.....+ .
T Consensus       359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght-----davw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~  431 (577)
T KOG0642|consen  359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT-----DAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-C  431 (577)
T ss_pred             EEeeccCceeeeeccCCCCCcccccCcchhccceeccc-----cceeeeeecc-cccceeeecCCceEEeeccCCcCc-c
Confidence            88888 6 99999765321        13455677887     9999999997 888899999999999999866554 3


Q ss_pred             eeec--cCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          161 QLVA--HDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       161 ~~~~--~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      ++..  ..+...++.+-.  ..+.++...-+.-.+++.........+..    .+.....+..+.++| +..+.+++..+
T Consensus       432 ~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed  510 (577)
T KOG0642|consen  432 TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHED  510 (577)
T ss_pred             ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccC
Confidence            3321  122334566552  22233322333333444433332222111    111224577889998 77899999999


Q ss_pred             CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +. |+++|... +.++.....|...++++++.|+|. +|++++.|+.+++|.+....
T Consensus       511 ~~-Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  511 RS-IRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             Cc-eecccccc-cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchh
Confidence            99 99999988 788999999999999999999995 99999999999999987755

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=2.9e-19  Score=138.47  Aligned_cols=234  Identities=20%  Similarity=0.276  Sum_probs=178.6

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      ...+|+|.+|++|.     ..+|.+-.  .|.||.....+ ++...++..|.     ..|++++|+| ..+.|++++.|.
T Consensus         9 ~~~pitchAwn~dr-----t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd-----~~vtgvdWap-~snrIvtcs~dr   77 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR-----TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD-----KIVTGVDWAP-KSNRIVTCSHDR   77 (361)
T ss_pred             ccCceeeeeecCCC-----ceEEeccCCceEEEEEecCCCCceeceehhhhC-----cceeEEeecC-CCCceeEccCCC
Confidence            45789999999999     78888764  99999998887 78888888888     9999999998 889999999999


Q ss_pred             eEEEEECCC-Ce--eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcce---eeEEeCCCCCCCeEEEEEe
Q 040307          147 TCVIWDIDR-EI--LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERS---TIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       147 ~v~i~d~~~-~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~v~~~~~~  219 (339)
                      .-++|.... ++  +...+..++..++++.|+ ..+.|++|+....|.+|-++....-   ..+...  ....|.++.|+
T Consensus        78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP--irStv~sldWh  155 (361)
T KOG1523|consen   78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP--IRSTVTSLDWH  155 (361)
T ss_pred             CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc--cccceeeeecc
Confidence            999999844 33  445556788999999999 6999999999999999988765421   222222  45789999999


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCC-----------------CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFP-----------------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALI  282 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~-----------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i  282 (339)
                      | ++-+|++|+.|+. .++|..--.                 ++.+.++....+.|..+.|+|+| ..|+-.+.|..+.+
T Consensus       156 p-nnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  156 P-NNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSF  232 (361)
T ss_pred             C-CcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEE
Confidence            9 8899999999998 998864210                 01223333456789999999999 59999999999999


Q ss_pred             EEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307          283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      -|......           .+.......-+..++.|-.... +++++.|
T Consensus       233 ~da~~p~~-----------~v~~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  233 VDAAGPSE-----------RVQSVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             eecCCCch-----------hccchhhccCCceeeEeecCCc-eeecCCC
Confidence            98887651           1122222225566666655442 4555544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.4e-18  Score=147.62  Aligned_cols=292  Identities=13%  Similarity=0.180  Sum_probs=202.4

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S   97 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~   97 (339)
                      ..++.+++.   +.+.+...     +..+.+|.....+ ...........|...+++.++||.+     +++|++. + .
T Consensus       163 ~~~I~~~~~---ge~~~i~~-----~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~-----~~~Aa~d~dGr  228 (792)
T KOG1963|consen  163 PKSIVDNNS---GEFKGIVH-----MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNE-----RYLAAGDSDGR  228 (792)
T ss_pred             CccEEEcCC---ceEEEEEE-----eeeEEEEEecccc-eeeccchhhhhhcccceeEEecccc-----ceEEEeccCCc
Confidence            467888888   88888877     7888998777655 3333223345688789999999999     8999987 4 9


Q ss_pred             EEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307           98 LRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus        98 i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                      |.+|.--.  +.......+.-|.     ..|++++|++ +|.+|++|+..|.+-+|.+.+++ .+-+..-.++|..+.++
T Consensus       229 I~vw~d~~~~~~~~t~t~lHWH~-----~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS  301 (792)
T KOG1963|consen  229 ILVWRDFGSSDDSETCTLLHWHH-----DEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS  301 (792)
T ss_pred             EEEEeccccccccccceEEEecc-----cccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence            99997544  3333455666676     8999999997 99999999999999999999988 44556678899999999


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCCcceeeEEeC--------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYEN--------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                       ++++.+....|..|.+....+......+...        ....+-.+.++++| ..+.++..+..+. |.+||+.+.. 
T Consensus       302 ~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~-vQ~ydl~td~-  378 (792)
T KOG1963|consen  302 PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH-VQFYDLYTDS-  378 (792)
T ss_pred             CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce-EEEEeccccc-
Confidence             7889999999999999887655422222111        01223455667776 5555555666666 7777765422 


Q ss_pred             ceEE--------------------------------------------------------------------EecCCCCe
Q 040307          247 PVVV--------------------------------------------------------------------LSKHEGSV  258 (339)
Q Consensus       247 ~~~~--------------------------------------------------------------------~~~~~~~v  258 (339)
                      .+..                                                                    ...|...+
T Consensus       379 ~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~  458 (792)
T KOG1963|consen  379 TIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF  458 (792)
T ss_pred             eeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee
Confidence            0000                                                                    01244433


Q ss_pred             eEEEe-ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          259 NGISW-APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       259 ~~~~~-~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      ...++ +|.....+++++.||.++||-+...+. ............+.. -|..++++++|+.||. +++++.|++|.+|
T Consensus       459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n-~~k~~s~W~c~~i~s-y~k~~i~a~~fs~dGs-lla~s~~~~Itiw  535 (792)
T KOG1963|consen  459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN-IYKKSSNWTCKAIGS-YHKTPITALCFSQDGS-LLAVSFDDTITIW  535 (792)
T ss_pred             EEEEEecCcccceeEEeccCCeEEEEEEecccc-cCcCccceEEeeeec-cccCcccchhhcCCCc-EEEEecCCEEEEe
Confidence            33333 343323788999999999999966551 000000111111122 3788999999999995 9999999999999


Q ss_pred             e
Q 040307          338 K  338 (339)
Q Consensus       338 ~  338 (339)
                      +
T Consensus       536 d  536 (792)
T KOG1963|consen  536 D  536 (792)
T ss_pred             c
Confidence            7

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=1.9e-20  Score=161.78  Aligned_cols=238  Identities=18%  Similarity=0.263  Sum_probs=181.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|-.+|+|+.|...+     .++++|+|  .++||..++..  +.....+|.     +.|+.++.+. ++.++++++.|
T Consensus       187 lgH~naVyca~fDrtg-----~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs-----~ditdlavs~-~n~~iaaaS~D  253 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTG-----RYIITGSDDRLVKIWSMETAR--CLASCRGHS-----GDITDLAVSS-NNTMIAAASND  253 (1113)
T ss_pred             Hhhhhheeeeeecccc-----ceEeecCccceeeeeeccchh--hhccCCCCc-----cccchhccch-hhhhhhhcccC
Confidence            5899999999999999     99999996  99999988887  899999998     9999999996 88899999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECC-CCccee--------------eEEeC----
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLR-DKERST--------------IIYEN----  206 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--------------~~~~~----  206 (339)
                      ..|++|.+.++.++..+.+|++.|++++|+|-.   +.+.||++++||.+ ......              .+++.    
T Consensus       254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~  330 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR  330 (1113)
T ss_pred             ceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence            999999999999999999999999999999643   77889999999998 211000              00000    


Q ss_pred             --------CCCCCCeEEEEEecCCCCeEE-----------EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307          207 --------PVQDCPLLRLEWNKADPRFMA-----------TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY  267 (339)
Q Consensus       207 --------~~~~~~v~~~~~~p~~~~~l~-----------~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~  267 (339)
                              .......-.++|.. ..-.++           ++-.+-. +++|++.. +...+.+.+|...+..+.++|-+
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             cccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeE-eeeeeccc-chhhhhhcccccceeeeeecCCC
Confidence                    00001111222321 222222           2223333 77888876 66678888999999999999999


Q ss_pred             CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          268 GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       268 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      +....+++.||...|||+-.+.             |+..+ .....+..-.||++|..++..-.-|.+.|.
T Consensus       408 ~ri~msag~dgst~iwdi~eg~-------------pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEGI-------------PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             cHhhhhccCCCceEeeecccCC-------------cceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence            8778899999999999999887             44322 235567788999999866655566666664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=8.8e-18  Score=125.61  Aligned_cols=239  Identities=13%  Similarity=0.119  Sum_probs=165.9

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE---eecC-----CCCceEEEEcCC
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL---IFDH-----PYTPTNIAFFPS   82 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~~~-----~~~v~~l~~~~~   82 (339)
                      +....|..+|+.++|..+     +|++|+     ||.|+=|.|+.........+..   ...|     -..|+++...|.
T Consensus        56 v~eqahdgpiy~~~f~d~-----~Lls~g-----dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~  125 (325)
T KOG0649|consen   56 VPEQAHDGPIYYLAFHDD-----FLLSGG-----DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS  125 (325)
T ss_pred             eeccccCCCeeeeeeehh-----heeecc-----CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence            333568999999999966     788888     8999999998654421110000   0112     235899999987


Q ss_pred             CCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           83 EETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        83 ~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                      ..    .+|.+|+| .++-||+++++  ...++++|+     ..|.++.-.. ....+++|++||++++||.++++.+..
T Consensus       126 en----Si~~AgGD~~~y~~dlE~G~--i~r~~rGHt-----DYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  126 EN----SILFAGGDGVIYQVDLEDGR--IQREYRGHT-----DYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             CC----cEEEecCCeEEEEEEecCCE--EEEEEcCCc-----ceeeeeeecc-cCcceeecCCCccEEEEeccccceeEE
Confidence            74    67777777 99999999998  788999999     8888888753 567899999999999999999998877


Q ss_pred             eecc----------CCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307          162 LVAH----------DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       162 ~~~~----------~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                      +...          ...|-+++.+ .+++++|+ ...+.+|.++..+....+.-    ..++..+.|.   .+.+++++.
T Consensus       194 ie~yk~~~~lRp~~g~wigala~~-edWlvCGg-Gp~lslwhLrsse~t~vfpi----pa~v~~v~F~---~d~vl~~G~  264 (325)
T KOG0649|consen  194 IEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGG-GPKLSLWHLRSSESTCVFPI----PARVHLVDFV---DDCVLIGGE  264 (325)
T ss_pred             eccccChhhcCcccCceeEEEecc-CceEEecC-CCceeEEeccCCCceEEEec----ccceeEeeee---cceEEEecc
Confidence            6422          1234455444 66777765 45799999999886555433    3678888884   356666676


Q ss_pred             CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      .+. +.-|.+..  .............++..|+-.--++|..++....+.|+
T Consensus       265 g~~-v~~~~l~G--vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  265 GNH-VQSYTLNG--VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ccc-eeeeeecc--EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            666 88887753  33333333334455555543322466666666667665

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=1.1e-16  Score=126.59  Aligned_cols=284  Identities=15%  Similarity=0.196  Sum_probs=192.8

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--   95 (339)
                      ..+..+.|+.+   ...|..|+     ....++|+.+.-+.-...     ......|--+-|+.       .++|..+  
T Consensus         6 ~ti~~~~~Nqd---~~~lsvGs-----~~Gyk~~~~~~~~k~~~~-----~~~~~~IvEmLFSS-------SLvaiV~~~   65 (391)
T KOG2110|consen    6 PTINFIGFNQD---STLLSVGS-----KDGYKIFSCSPFEKCFSK-----DTEGVSIVEMLFSS-------SLVAIVSIK   65 (391)
T ss_pred             cceeeeeeccc---eeEEEccC-----CCceeEEecCchHHhhcc-----cCCCeEEEEeeccc-------ceeEEEecC
Confidence            34566669999   99999999     455678666554331111     22233455666765       4555544  


Q ss_pred             C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec---cCCcee
Q 040307           96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA---HDREVY  170 (339)
Q Consensus        96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~v~  170 (339)
                      +  .+++++++.....+...+.        .+|.++.++.   +.|+++=++ .|+|||+++.+.+.++..   +...+.
T Consensus        66 qpr~Lkv~~~Kk~~~ICe~~fp--------t~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~  133 (391)
T KOG2110|consen   66 QPRKLKVVHFKKKTTICEIFFP--------TSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC  133 (391)
T ss_pred             CCceEEEEEcccCceEEEEecC--------CceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence            3  7999999887633333333        5899999863   556665554 499999999998887743   444566


Q ss_pred             EEEec-CCcEEEEEe--CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307          171 DISWG-GFNVFASVS--GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP  247 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~  247 (339)
                      .++.+ .+.+++--+  ..|.|.+||+.+.+....+. .  |++.+.+++|+| +|.+||+++..|+.|+||.+.. ++.
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-a--H~~~lAalafs~-~G~llATASeKGTVIRVf~v~~-G~k  208 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-A--HKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE-GQK  208 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-e--cCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC-ccE
Confidence            66666 455776433  35899999999887555443 3  899999999998 9999999999999999999987 566


Q ss_pred             eEEEecCC--CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC-cc-----------cce---------
Q 040307          248 VVVLSKHE--GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG-DV-----------EPE---------  304 (339)
Q Consensus       248 ~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-----------~~~---------  304 (339)
                      +.+++...  ..|.+++|+|++ .+|++.+..++|.||.++.....+.++.+.. ..           -|.         
T Consensus       209 l~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~  287 (391)
T KOG2110|consen  209 LYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS  287 (391)
T ss_pred             eeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc
Confidence            77776433  368899999999 5999999999999999987653222211110 00           000         


Q ss_pred             eee-----cccc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 LCY-----QSMA--EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 ~~~-----~~~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..+     ...+  .+..+.-.+..+.+..++.||.+..|++
T Consensus       288 R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l  329 (391)
T KOG2110|consen  288 RKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL  329 (391)
T ss_pred             cceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence            000     0111  2334443456777889999999998875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=2.3e-16  Score=137.60  Aligned_cols=280  Identities=20%  Similarity=0.325  Sum_probs=206.1

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeecccc-CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDY-SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IV   91 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l   91 (339)
                      ..|...|.+++|+|+   +..++.++    . ++.+++|+....  ....  .+ ..|...|.+++|+|++     . ++
T Consensus       152 ~~~~~~v~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~--~~~~--~~-~~~~~~v~~~~~~~~~-----~~~~  214 (466)
T COG2319         152 EGHSESVTSLAFSPD---GKLLASGS----SLDGTIKLWDLRTG--KPLS--TL-AGHTDPVSSLAFSPDG-----GLLI  214 (466)
T ss_pred             ecCcccEEEEEECCC---CCEEEecC----CCCCceEEEEcCCC--ceEE--ee-ccCCCceEEEEEcCCc-----ceEE
Confidence            346678999999999   88888887    4 999999877652  2221  22 4589999999999988     6 55


Q ss_pred             EEeC-C-cEEEEeecCCcceeEE-EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeccCC
Q 040307           92 ATSG-D-SLRLWEIHDDRTELKS-LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQLVAHDR  167 (339)
Q Consensus        92 a~~~-~-~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~  167 (339)
                      ++++ + .+++|+...+.  ... .+..|.     ... ...|+| ++..+++++.|+.+++|++..... ...+..|..
T Consensus       215 ~~~~~d~~i~~wd~~~~~--~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
T COG2319         215 ASGSSDGTIRLWDLSTGK--LLRSTLSGHS-----DSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS  285 (466)
T ss_pred             EEecCCCcEEEEECCCCc--EEeeecCCCC-----cce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence            5534 5 89999877554  444 566665     443 237987 778899999999999999986664 444467888


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE-eeCCCeEEEEecCCCC
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV-GMDSNKVVVLDIRFPT  245 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~d~~~i~i~d~~~~~  245 (339)
                      .+.++.|+ ++..+++++.|+.+.+||........... ...+...+..+.| +.++..++.+ ..++. +.+|++....
T Consensus       286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~-~~~~~~~~~~  362 (466)
T COG2319         286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SPDGSLLVSGGSDDGT-IRLWDLRTGK  362 (466)
T ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CCCCCEEEEeecCCCc-EEeeecCCCc
Confidence            99999999 47788889999889999988877555444 1224557899999 5343555555 56766 8899998744


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEE-EeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc-ceeEEEEecCCCC
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCS-VADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM-AEINVVRWSPLEL  323 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~  323 (339)
                       ....... ...+..+.+.+ . ..+.. +..++.+.+|+.....             ........ ..+....+++++.
T Consensus       363 -~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  425 (466)
T COG2319         363 -PLKTLEG-HSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGS-------------LLRNLDGHTSRVTSLDFSPDGK  425 (466)
T ss_pred             -eeEEecC-CceEEEEEECC-C-CCEEEEecCCCceEEEecccCe-------------eeeeccCCCCcEEEEEECCCCc
Confidence             2233322 22288999999 6 45555 8899999999999987             22222222 7899999999998


Q ss_pred             ceEEEecCCeEEEEeC
Q 040307          324 DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       324 ~l~~~~~d~~v~~w~v  339 (339)
                      .++.++.++.+++|++
T Consensus       426 ~~~~~~~~~~~~~~~~  441 (466)
T COG2319         426 SLASGSSDNTIRLWDL  441 (466)
T ss_pred             EEEEecCCCcEEEEec
Confidence            7888889999999974

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=8.2e-17  Score=135.72  Aligned_cols=256  Identities=12%  Similarity=0.105  Sum_probs=164.8

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +.+..+.....+..++++|+   +++|++++.   .++.|.+|+++ +.+.+.....  ....+.+..++|+|++     
T Consensus        26 ~~~~~~~~~~~~~~l~~spd---~~~lyv~~~---~~~~i~~~~~~-~~g~l~~~~~--~~~~~~p~~i~~~~~g-----   91 (330)
T PRK11028         26 TLLQVVDVPGQVQPMVISPD---KRHLYVGVR---PEFRVLSYRIA-DDGALTFAAE--SPLPGSPTHISTDHQG-----   91 (330)
T ss_pred             eeeeEEecCCCCccEEECCC---CCEEEEEEC---CCCcEEEEEEC-CCCceEEeee--ecCCCCceEEEECCCC-----
Confidence            34555556677889999999   999888763   57899999887 3333332111  2334467899999999     


Q ss_pred             CeEEEeC--C-cEEEEeecCCc-c-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCCCeeeee-
Q 040307           89 DIVATSG--D-SLRLWEIHDDR-T-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC-SVDTTCVIWDIDREILETQ-  161 (339)
Q Consensus        89 ~~la~~~--~-~i~iw~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~-  161 (339)
                      ++|++++  + .|.+|++++.. . .....+.+.      ....+++++| ++++++++ ..++.|.+||+++...+.. 
T Consensus        92 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         92 RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL------EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC------CcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            6666654  3 99999997532 1 122222222      3456788998 88777554 4569999999976332211 


Q ss_pred             ----ee-ccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCC--cc--eeeEEeCCC---CCCCeEEEEEecCCCCeEE
Q 040307          162 ----LV-AHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDK--ER--STIIYENPV---QDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       162 ----~~-~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~--~~--~~~~~~~~~---~~~~v~~~~~~p~~~~~l~  227 (339)
                          .. ........+.|+ ++++++++.. ++.|.+||+...  +.  ...+...+.   +......+.++| ++++++
T Consensus       165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~ly  243 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLY  243 (330)
T ss_pred             CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEE
Confidence                11 122346789999 6788877765 899999999742  21  111111111   112334688998 889888


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecC---CCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCC
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKH---EGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGP  288 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~  288 (339)
                      ++......|.+|++......+ ++..+   ......++++|+|+ +|+++. .+++|.+|+++..
T Consensus       244 v~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~-~l~va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        244 ACDRTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGK-YLIAAGQKSHHISVYEIDGE  306 (330)
T ss_pred             EecCCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCC-EEEEEEccCCcEEEEEEcCC
Confidence            886543349999997543222 22222   22456899999995 666555 5899999998754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=2.6e-16  Score=122.18  Aligned_cols=280  Identities=14%  Similarity=0.154  Sum_probs=187.0

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC--CceEEEEcCCCCCCCCCeEEE-eC
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY--TPTNIAFFPSEETLNPDIVAT-SG   95 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~~~la~-~~   95 (339)
                      ...+++|+.|   ...+++|.     +...+||+.++-......     ..+.+  .+..+-|-.       ++||- ||
T Consensus         7 ~~lsvs~NQD---~ScFava~-----~~Gfriyn~~P~ke~~~r-----~~~~~G~~~veMLfR~-------N~laLVGG   66 (346)
T KOG2111|consen    7 KTLSVSFNQD---HSCFAVAT-----DTGFRIYNCDPFKESASR-----QFIDGGFKIVEMLFRS-------NYLALVGG   66 (346)
T ss_pred             ceeEEEEccC---CceEEEEe-----cCceEEEecCchhhhhhh-----ccccCchhhhhHhhhh-------ceEEEecC
Confidence            4556999999   89999999     888999998874443333     11222  223333332       34433 33


Q ss_pred             -C-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeeeeeeecc-
Q 040307           96 -D-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILETQLVAH-  165 (339)
Q Consensus        96 -~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~-  165 (339)
                       +       .|.|||-....  ++.++.-.      .+|.++.+.+   ..|++.- .+.|+||... ..+.+..+... 
T Consensus        67 g~~pky~pNkviIWDD~k~~--~i~el~f~------~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~  134 (346)
T KOG2111|consen   67 GSRPKYPPNKVIIWDDLKER--CIIELSFN------SEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRS  134 (346)
T ss_pred             CCCCCCCCceEEEEecccCc--EEEEEEec------cceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeeccc
Confidence             1       79999944333  66666543      6899999974   4555544 5899999987 44555555322 


Q ss_pred             -CCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcc-eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          166 -DREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKER-STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       166 -~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                       ...+.+++-. ...+|+.-+ .-|.|+|-|+...+. ...+...  |+..|.+++.+- +|..+|+++..|+-|+|||.
T Consensus       135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A--H~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt  211 (346)
T KOG2111|consen  135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA--HDSDIACVALNL-QGTLVATASTKGTLIRIFDT  211 (346)
T ss_pred             CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc--ccCceeEEEEcC-CccEEEEeccCcEEEEEEEc
Confidence             2335455444 455555444 458999999998775 3344444  889999999995 99999999999999999999


Q ss_pred             CCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC--CCCCCCc-ccce---------eee
Q 040307          242 RFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG--NGGPSGD-VEPE---------LCY  307 (339)
Q Consensus       242 ~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~-~~~~---------~~~  307 (339)
                      .. +.++.+++..  ...|++++|||+. .+||++|..|++.||.++.......  ...+... +-|.         ...
T Consensus       212 ~~-g~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~  289 (346)
T KOG2111|consen  212 ED-GTLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQ  289 (346)
T ss_pred             CC-CcEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEE
Confidence            98 6667777642  3479999999999 6999999999999999988552111  1111000 1111         011


Q ss_pred             cccceeEEEEecCCCCceEEEecCCeEE
Q 040307          308 QSMAEINVVRWSPLELDWIAIAFVNKLQ  335 (339)
Q Consensus       308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~  335 (339)
                      -..+...-++|-.+...+++.+.||.-+
T Consensus       290 l~~~~~~~~~fg~~~nsvi~i~~Dgsy~  317 (346)
T KOG2111|consen  290 LPQGTQCIIAFGSETNTVIAICADGSYY  317 (346)
T ss_pred             ccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence            1244566677877755688888887654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=5.2e-19  Score=149.71  Aligned_cols=242  Identities=14%  Similarity=0.196  Sum_probs=187.3

Q ss_pred             ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      ..+.++. |.+.|+|++|+.+   |+++|+|+    .|..|.+|+-..+  .     .+...|.+.|.|+.|+|-.    
T Consensus        44 ~llqtLKgHKDtVycVAys~d---GkrFASG~----aDK~VI~W~~klE--G-----~LkYSH~D~IQCMsFNP~~----  105 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKD---GKRFASGS----ADKSVIIWTSKLE--G-----ILKYSHNDAIQCMSFNPIT----  105 (1081)
T ss_pred             ccccccccccceEEEEEEccC---CceeccCC----CceeEEEeccccc--c-----eeeeccCCeeeEeecCchH----
Confidence            3444443 7899999999999   99999999    7999999653332  2     2347999999999999999    


Q ss_pred             CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee---
Q 040307           88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV---  163 (339)
Q Consensus        88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---  163 (339)
                       ..|++++= ..-+|..+...   +...+.      ...|.+.+|.. ||++++.|-.+|+|.+-+- +++....+.   
T Consensus       106 -h~LasCsLsdFglWS~~qK~---V~K~ks------s~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpg  173 (1081)
T KOG1538|consen  106 -HQLASCSLSDFGLWSPEQKS---VSKHKS------SSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPG  173 (1081)
T ss_pred             -HHhhhcchhhccccChhhhh---HHhhhh------heeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCC
Confidence             89999984 88999987653   111111      16788999995 9999999999999999875 344333332   


Q ss_pred             ccCCceeEEEecC------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307          164 AHDREVYDISWGG------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV  237 (339)
Q Consensus       164 ~~~~~v~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~  237 (339)
                      +..++|++++|+|      .+.+++.....++.+|.+.....-.    ...-.-...++.+.| +|.+++.|+.|+. ++
T Consensus       174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk----~r~L~FdP~CisYf~-NGEy~LiGGsdk~-L~  247 (1081)
T KOG1538|consen  174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK----DRALNFDPCCISYFT-NGEYILLGGSDKQ-LS  247 (1081)
T ss_pred             CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc----cccCCCCchhheecc-CCcEEEEccCCCc-eE
Confidence            4678999999993      4678888888899998887653211    111123567899998 9999999999999 99


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +|--.  +-.+.++.....+|+.++..|++ +.++.|+.||+|..|++-...
T Consensus       248 ~fTR~--GvrLGTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  248 LFTRD--GVRLGTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             EEeec--CeEEeeccccceeEEEEEEccCC-ceEEEEEccCeeehhhhHHhH
Confidence            99643  45566676677899999999999 699999999999999976543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.4e-17  Score=129.85  Aligned_cols=269  Identities=14%  Similarity=0.183  Sum_probs=182.5

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--C-cE
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--D-SL   98 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i   98 (339)
                      -++|||+   |+++|+..     +-.+.|  -+.++.++.+    .+..-+.|..+.|..+.     .++.++.  + .|
T Consensus        13 ~c~fSp~---g~yiAs~~-----~yrlvi--Rd~~tlq~~q----lf~cldki~yieW~ads-----~~ilC~~yk~~~v   73 (447)
T KOG4497|consen   13 FCSFSPC---GNYIASLS-----RYRLVI--RDSETLQLHQ----LFLCLDKIVYIEWKADS-----CHILCVAYKDPKV   73 (447)
T ss_pred             ceeECCC---CCeeeeee-----eeEEEE--eccchhhHHH----HHHHHHHhhheeeeccc-----eeeeeeeeccceE
Confidence            4689999   99999999     557777  6666555544    23335678899999888     5555544  4 99


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT-RRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G  176 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~  176 (339)
                      .+|++...+  -...+....     ..+..++|+| ++ ..|.+..-+-.|.+|.+.+.+.... +-.+..+..++|+ +
T Consensus        74 qvwsl~Qpe--w~ckIdeg~-----agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   74 QVWSLVQPE--WYCKIDEGQ-----AGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPD  144 (447)
T ss_pred             EEEEeecce--eEEEeccCC-----CcceeeeECC-CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCC
Confidence            999999887  444555544     7899999999 77 5566666789999999988764332 2223345777888 6


Q ss_pred             CcEEEEEeC------------------------------------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307          177 FNVFASVSG------------------------------------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       177 ~~~l~~~~~------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p  220 (339)
                      +++.+.+++                                    +..+.+||.--.-... .++   ....+..++|+|
T Consensus       145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-aYe---~~lG~k~v~wsP  220 (447)
T KOG4497|consen  145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-AYE---RGLGLKFVEWSP  220 (447)
T ss_pred             CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-eee---eccceeEEEecc
Confidence            666655543                                    1223344432211111 121   135688999999


Q ss_pred             CCCCeEEEEeeCCCeEEEEecCCCC-------------------------------------------------------
Q 040307          221 ADPRFMATVGMDSNKVVVLDIRFPT-------------------------------------------------------  245 (339)
Q Consensus       221 ~~~~~l~~~~~d~~~i~i~d~~~~~-------------------------------------------------------  245 (339)
                       .+++|++|+.|+. +++.+--+-.                                                       
T Consensus       221 -~~qflavGsyD~~-lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~  298 (447)
T KOG4497|consen  221 -CNQFLAVGSYDQM-LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQ  298 (447)
T ss_pred             -ccceEEeeccchh-hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhh
Confidence             8999999999988 7775432100                                                       


Q ss_pred             ----------CceEEEecCCCCeeEEEeccCCCCeEEEEeCC--CcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307          246 ----------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD--SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI  313 (339)
Q Consensus       246 ----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (339)
                                +|...+....-.+..++|++|. .+++|-...  +.+.+||++..+             .........+|
T Consensus       299 ~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~-------------l~avLiQk~pi  364 (447)
T KOG4497|consen  299 QMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLK-------------LHAVLIQKHPI  364 (447)
T ss_pred             hhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhh-------------hhhhhhhccce
Confidence                      0000111122356779999998 687776543  679999999987             44444456689


Q ss_pred             EEEEecCCCCceEEEecCCeEEEEe
Q 040307          314 NVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       314 ~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ....|+|..+.|+.......+.+|.
T Consensus       365 raf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  365 RAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             eEEEeCCCCceEEEEcCCceEEEEc
Confidence            9999999999988877777788884

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=4.9e-17  Score=126.18  Aligned_cols=235  Identities=12%  Similarity=0.154  Sum_probs=161.7

Q ss_pred             ceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE-EeCC------
Q 040307           74 PTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT-CSVD------  145 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d------  145 (339)
                      ..+++|+.|.     ..++++.+ -.+||+++.-+......+...   +  -.+..|-|-   .++|+- |+.+      
T Consensus         8 ~lsvs~NQD~-----ScFava~~~Gfriyn~~P~ke~~~r~~~~~---G--~~~veMLfR---~N~laLVGGg~~pky~p   74 (346)
T KOG2111|consen    8 TLSVSFNQDH-----SCFAVATDTGFRIYNCDPFKESASRQFIDG---G--FKIVEMLFR---SNYLALVGGGSRPKYPP   74 (346)
T ss_pred             eeEEEEccCC-----ceEEEEecCceEEEecCchhhhhhhccccC---c--hhhhhHhhh---hceEEEecCCCCCCCCC
Confidence            4459999999     79999988 999999876331111111111   1  223334443   344443 3332      


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      ..|.|||-...+++.++. ...+|.++.+... .|++. ..+.|++|.....-..............+.+++-+ .+..+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~-riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~-~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD-RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT-SNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC-eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCC-CCceE
Confidence            479999976777787775 6789999999844 44444 36789999998543333323321212334444433 24556


Q ss_pred             EEEEeeCCCeEEEEecCCCCC-ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc-EEEEEecCCCCCCCCCCCCCcccc
Q 040307          226 MATVGMDSNKVVVLDIRFPTN-PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR-ALIWEVVGPGYRSGNGGPSGDVEP  303 (339)
Q Consensus       226 l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~  303 (339)
                      ||.-+..-++|+|-|+..... +-..+.+|...|.+++.+-+| .++||+|..|+ |||||..+++             +
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~-------------~  216 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGT-------------L  216 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCc-------------E
Confidence            776666555699999987443 357889999999999999999 69999999996 8999999988             3


Q ss_pred             eeee---cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          304 ELCY---QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       304 ~~~~---~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +...   ...+.|++++|||+..+|++++.-|+|++|.+
T Consensus       217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            3222   34678999999999998888889999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=7.5e-19  Score=145.51  Aligned_cols=208  Identities=18%  Similarity=0.215  Sum_probs=156.1

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCCC-CCEEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGFD-TRRVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~  143 (339)
                      .+|++.|+||+|+.+|     .+|++|+|  .+.|||.-..+  ++..+ .+|.     ..|.++.|-|.. ..++++|.
T Consensus        47 ~GH~GCVN~LeWn~dG-----~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHt-----aNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADG-----ELLASGSDDTRLIVWDPFEYK--LLHSISTGHT-----ANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             ccccceecceeecCCC-----CEEeecCCcceEEeecchhcc--eeeeeecccc-----cceeEEeeeccCCCeEEEecc
Confidence            6899999999999999     89999997  99999998655  55444 4676     899999999864 45788899


Q ss_pred             CCCeEEEEECCCC----------eeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEE-------
Q 040307          144 VDTTCVIWDIDRE----------ILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIY-------  204 (339)
Q Consensus       144 ~d~~v~i~d~~~~----------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------  204 (339)
                      .|..|+++|+...          +....+..|...|..++..|  .+.+.+++.||+|+-+|+|.......-.       
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            9999999999742          24455567888899998883  5899999999999999999864222111       


Q ss_pred             eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-----------------ceEEE-ecCC-----------
Q 040307          205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-----------------PVVVL-SKHE-----------  255 (339)
Q Consensus       205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-----------------~~~~~-~~~~-----------  255 (339)
                      .....--...++..+|.+..+|++|+.+.. .++||.+...+                 ++..+ .+|-           
T Consensus       195 ny~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HhchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence            110122456789999999999999999999 99999543211                 11111 1121           


Q ss_pred             CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..++-++|+|+|..+|++-+. ..|+++|+...+
T Consensus       274 ~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~  306 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK  306 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence            125678999999656666554 479999999877

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=5.2e-18  Score=128.22  Aligned_cols=241  Identities=17%  Similarity=0.185  Sum_probs=174.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      .+|.+.|+++.|-.++     + |.+|.  +.|++|.+.+..  ....++ .+.     ..|+.+.--| + ..+.+-+.
T Consensus        11 Rp~~~~v~s~~fqa~~-----r-L~sg~~~G~V~~w~lqt~r--~~~~~r~~g~-----~~it~lq~~p-~-d~l~tqgR   75 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQANE-----R-LMSGLSVGIVKMWVLQTER--DLPLIRLFGR-----LFITNLQSIP-N-DSLDTQGR   75 (323)
T ss_pred             ccccchheehhhccch-----h-hhcccccceEEEEEeecCc--cchhhhhhcc-----ceeeceeecC-C-cchhhcCC
Confidence            4888999999998887     5 55665  399999999987  455555 333     6788888776 3 67888889


Q ss_pred             CCeEEEEECCCCe------------------------ee-ee--e--------------------------eccCCceeE
Q 040307          145 DTTCVIWDIDREI------------------------LE-TQ--L--------------------------VAHDREVYD  171 (339)
Q Consensus       145 d~~v~i~d~~~~~------------------------~~-~~--~--------------------------~~~~~~v~~  171 (339)
                      |+.+.+|++.-+.                        .. ..  +                          .+..+.+.|
T Consensus        76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            9999999886421                        00 00  0                          011234555


Q ss_pred             EEec--C--CcEEEEEeCCCcEEEEECCCCcceeeE-------EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          172 ISWG--G--FNVFASVSGDCSVRVFDLRDKERSTII-------YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       172 ~~~~--~--~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      ..+.  .  .-++++|-.+|.+.+||+.++.....+       .....|..++.++.+.+ .-..=++|+.+.. +..|+
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk-l~~~S  233 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK-LVMYS  233 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc-ceeee
Confidence            5554  2  235667788999999999987432221       22234778999999987 4344456666666 88888


Q ss_pred             cCCCCC---ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEE
Q 040307          241 IRFPTN---PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVV  316 (339)
Q Consensus       241 ~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~  316 (339)
                      +.....   ...+.....-.|..+..-||+ +.+||++.|++||||+.++..             |+ ....|.+.|+++
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~-------------pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN-------------PLAVLKYHSAGVNAV  299 (323)
T ss_pred             eccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC-------------chhhhhhhhcceeEE
Confidence            765311   112233334578999999999 799999999999999999988             66 455689999999


Q ss_pred             EecCCCCceEEEecCCeEEEEeC
Q 040307          317 RWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       317 ~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|+|+.+.+++++.|++|.+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999887888999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=1.1e-17  Score=133.58  Aligned_cols=247  Identities=18%  Similarity=0.257  Sum_probs=171.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecC------CCC-----C-cccceeeEeecCCCCceEEEEcCCC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFN------PET-----S-DFSADNRLIFDHPYTPTNIAFFPSE   83 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~------~~~-----~-~~~~~~~~~~~~~~~v~~l~~~~~~   83 (339)
                      |...|+++.|+|+   |++||+|+    .+|.|.+|...      .++     . .... .....+|...|..++|+|++
T Consensus        64 H~~aVN~vRf~p~---gelLASg~----D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~  135 (434)
T KOG1009|consen   64 HTRAVNVVRFSPD---GELLASGG----DGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDS  135 (434)
T ss_pred             CcceeEEEEEcCC---cCeeeecC----CCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCC
Confidence            6789999999999   99999999    89999998765      112     1 1221 12235799999999999999


Q ss_pred             CCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           84 ETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                           .++++++ + .+++||+..+.  ....+..|.     ..+..++|.| -++++++-+.|...+.+.+...+.+..
T Consensus       136 -----~~l~s~s~dns~~l~Dv~~G~--l~~~~~dh~-----~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~  202 (434)
T KOG1009|consen  136 -----NFLVSGSVDNSVRLWDVHAGQ--LLAILDDHE-----HYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKR  202 (434)
T ss_pred             -----ceeeeeeccceEEEEEeccce--eEeeccccc-----cccceeecch-hhhhhhhhccCcccceeeeeeeeeeee
Confidence                 8888887 5 99999999997  788888888     8899999998 889999999998777776654321111


Q ss_pred             ee-------------------ccCC----ceeEEEec-CCcEEEEEeC----CC-----cEEEEECCCCcceeeEEeCCC
Q 040307          162 LV-------------------AHDR----EVYDISWG-GFNVFASVSG----DC-----SVRVFDLRDKERSTIIYENPV  208 (339)
Q Consensus       162 ~~-------------------~~~~----~v~~~~~~-~~~~l~~~~~----d~-----~i~i~d~~~~~~~~~~~~~~~  208 (339)
                      ..                   .|..    -...++|+ ++.++++.+.    .+     ..++|+-...+.+......  
T Consensus       203 ~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--  280 (434)
T KOG1009|consen  203 HGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--  280 (434)
T ss_pred             eeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC--
Confidence            10                   0111    12345677 5667665532    12     2344443333333322222  


Q ss_pred             CCCCeEEEEEec-----------------CCCCeEEEEeeCCCeEEEEecCCCCCceE-EEecCCCCeeEEEeccCCCCe
Q 040307          209 QDCPLLRLEWNK-----------------ADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLSKHEGSVNGISWAPLYGRR  270 (339)
Q Consensus       209 ~~~~v~~~~~~p-----------------~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~  270 (339)
                      ...+...+.++|                 .-+-.+|+++.+.  +++||.... .|+. .-.-|-..++.++|+++| ..
T Consensus       281 ~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~-~P~~~v~nihy~~iTDiaws~dg-~~  356 (434)
T KOG1009|consen  281 PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTL-EPLAVVDNIHYSAITDIAWSDDG-SV  356 (434)
T ss_pred             CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecce--EEEeccccc-cceEEEeeeeeeeecceeecCCC-cE
Confidence            334455555544                 0233556666654  999999874 4444 445588899999999999 59


Q ss_pred             EEEEeCCCcEEEEEecCCC
Q 040307          271 LCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       271 l~~~~~dg~v~iwd~~~~~  289 (339)
                      |+..|.||-..+.-++..+
T Consensus       357 l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  357 LLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEEeccCCceEEEEEcchh
Confidence            9999999998888777665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.80  E-value=3.1e-17  Score=128.56  Aligned_cols=307  Identities=15%  Similarity=0.245  Sum_probs=200.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC-cccceeeE-----------eecCCCCceEEEEcCCC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS-DFSADNRL-----------IFDHPYTPTNIAFFPSE   83 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~-~~~~~~~~-----------~~~~~~~v~~l~~~~~~   83 (339)
                      ..+-|.++.|...   |.+||+|.    .+|.|.++.-+.... +......+           ...-...|+.+.|.+++
T Consensus        24 eadiis~vef~~~---Ge~LatGd----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~   96 (433)
T KOG1354|consen   24 EADIISAVEFDHY---GERLATGD----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG   96 (433)
T ss_pred             hhcceeeEEeecc---cceEeecC----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence            3567999999999   99999999    799999976543332 22211111           01224568999999987


Q ss_pred             CCCCCCeEEEeCC-cEEEEeecCCccee------------------EEEeecCC-----------CccCCCCEEEEEEcC
Q 040307           84 ETLNPDIVATSGD-SLRLWEIHDDRTEL------------------KSLLNSNK-----------TSEFSSAITSFDWAG  133 (339)
Q Consensus        84 ~~~~~~~la~~~~-~i~iw~~~~~~~~~------------------~~~~~~~~-----------~~~~~~~i~~~~~~~  133 (339)
                      ..  ..+|+++.| +|++|.+.....+.                  +-.+..|.           ...|.-.|+++.++.
T Consensus        97 n~--a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns  174 (433)
T KOG1354|consen   97 NL--AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS  174 (433)
T ss_pred             Cc--cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence            32  256667777 99999986543111                  11111111           223446789999996


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCe---eeeeeecc-----CCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcce---
Q 040307          134 FDTRRVATCSVDTTCVIWDIDREI---LETQLVAH-----DREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERS---  200 (339)
Q Consensus       134 ~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~-----~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~---  200 (339)
                       |...++++ .|=.|.+|+++-..   .+.-++.+     ..-|++..|+|  .+.|+-.+..|+|++-|+|.....   
T Consensus       175 -D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  175 -DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             -ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence             88888875 47889999986432   12222222     34688899993  788999999999999999965321   


Q ss_pred             eeEEeCCC----------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC------------C-
Q 040307          201 TIIYENPV----------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG------------S-  257 (339)
Q Consensus       201 ~~~~~~~~----------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~------------~-  257 (339)
                      ..+++.+.          --..|..+.|++ +|+++++-..-  .|++||+....+|+.+.+.|..            . 
T Consensus       253 sKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDyl--tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I  329 (433)
T KOG1354|consen  253 SKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDYL--TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI  329 (433)
T ss_pred             hhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEeccc--eeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence            11222211          124678899996 99999975443  3999999888889998887753            2 


Q ss_pred             --eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC---CC----CCCCcccceeee---------------ccccee
Q 040307          258 --VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG---NG----GPSGDVEPELCY---------------QSMAEI  313 (339)
Q Consensus       258 --v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~----~~~~~~~~~~~~---------------~~~~~i  313 (339)
                        -..++|+-++ ..++||+..+.++++++..+..+..   .+    .+.....+....               .....|
T Consensus       330 fdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kki  408 (433)
T KOG1354|consen  330 FDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKI  408 (433)
T ss_pred             hheeEEEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHH
Confidence              2468899988 5999999999999999766553110   00    011111111111               113347


Q ss_pred             EEEEecCCCCceEEEecCCeEEEEe
Q 040307          314 NVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       314 ~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...+|+|... .+|+..-+.+.+|.
T Consensus       409 lh~aWhp~en-~ia~aatnnlyif~  432 (433)
T KOG1354|consen  409 LHTAWHPKEN-SIAVAATNNLYIFQ  432 (433)
T ss_pred             HhhccCCccc-eeeeeecCceEEec
Confidence            7789999986 66666666676663

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.8e-18  Score=143.33  Aligned_cols=221  Identities=16%  Similarity=0.212  Sum_probs=162.0

Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEEEec---CCcEEEEEeC
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDISWG---GFNVFASVSG  185 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~---~~~~l~~~~~  185 (339)
                      +...+.+|+     +.|++++|+. +|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-   ++.++++|..
T Consensus        42 lE~eL~GH~-----GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   42 LEAELTGHT-----GCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             hhhhhcccc-----ceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence            445678888     9999999997 9999999999999999999877777766 5899999999998   4779999999


Q ss_pred             CCcEEEEECCCCc---------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---
Q 040307          186 DCSVRVFDLRDKE---------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---  253 (339)
Q Consensus       186 d~~i~i~d~~~~~---------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---  253 (339)
                      |..|++||+...+         .....+..  |...|..++-.|...+.+.++++||. ++-+|++.+..+-.....   
T Consensus       116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~c--ht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~  192 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSC--HTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSI  192 (758)
T ss_pred             cceEEEEecccccccccccCccchhhhhhh--hhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHH
Confidence            9999999998632         22223333  66788889999866699999999999 999999974432222211   


Q ss_pred             ------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc-----eeee--cc-----------
Q 040307          254 ------HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP-----ELCY--QS-----------  309 (339)
Q Consensus       254 ------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~--~~-----------  309 (339)
                            .--...++..+|..+.+|++|+.|--.++||.+...+.....+.....+|     ...+  +|           
T Consensus       193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~  272 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY  272 (758)
T ss_pred             HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence                  11256789999999899999999999999996543321111111111111     1111  11           


Q ss_pred             cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          310 MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...++-+.|+|+|..|+..=....|.+++|
T Consensus       273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             eeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence            112677899999987776655666777765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=7e-18  Score=139.44  Aligned_cols=264  Identities=15%  Similarity=0.238  Sum_probs=175.6

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEe-cCCCCCcccceeeEeecCCCCceEEEEcCC--CCC-CCCCeE
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVN-FNPETSDFSADNRLIFDHPYTPTNIAFFPS--EET-LNPDIV   91 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~-~~~~~l   91 (339)
                      +..-+.|+.|+..   ...+.++.     |..+.+|. ...+..+...     .....-.+.+..-+-  +.+ ++..++
T Consensus        13 ~~e~vc~v~w~~~---eei~~~~d-----Dh~~~~~~~~~~~s~~~~~-----~p~df~pt~~h~~~rs~~~g~~~d~~~   79 (737)
T KOG1524|consen   13 NSEKVCCVDWSSN---EEIYFVSD-----DHQIFKWSDVSRDSVEVAK-----LPDDFVPTDMHLGGRSSGGGKGSDTLL   79 (737)
T ss_pred             cceeEEeeccccc---ceEEEecc-----CceEEEeecccchhhhhhh-----CCcccCCccccccccccCCCCCcceEE
Confidence            4455679999998   77777776     67776653 2222222111     111111111111111  111 122345


Q ss_pred             EEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           92 ATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        92 a~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      ++.+| .+.|.+-.. +  .......|.     +++.+-.|+| +|.-|+++++||.|++|.- +|-...++.....+|.
T Consensus        80 i~s~DGkf~il~k~~-r--VE~sv~AH~-----~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   80 ICSNDGRFVILNKSA-R--VERSISAHA-----AAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR  149 (737)
T ss_pred             EEcCCceEEEecccc-h--hhhhhhhhh-----hhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeE
Confidence            55556 776665332 2  344556666     8999999998 9999999999999999995 5554445555667899


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      |++|. +.+.++.+. .+.+.+=-+..+..+.. ...  |++-|.++.|+| ..+++++|++|-. .++||..  +.++.
T Consensus       150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~-WkA--HDGiiL~~~W~~-~s~lI~sgGED~k-fKvWD~~--G~~Lf  221 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIR-WRA--HDGLVLSLSWST-QSNIIASGGEDFR-FKIWDAQ--GANLF  221 (737)
T ss_pred             EEEECCCCCceEEec-CCeEEEeecccccceeE-Eec--cCcEEEEeecCc-cccceeecCCcee-EEeeccc--Ccccc
Confidence            99999 444444332 35666655555543332 333  889999999998 8899999999998 9999975  66788


Q ss_pred             EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      .-..|..+|++++|+|+.  .++.++.+ +++   ++                    ....+.|..++|||||..+..++
T Consensus       222 ~S~~~ey~ITSva~npd~--~~~v~S~n-t~R---~~--------------------~p~~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  222 TSAAEEYAITSVAFNPEK--DYLLWSYN-TAR---FS--------------------SPRVGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             cCChhccceeeeeecccc--ceeeeeee-eee---ec--------------------CCCccceEEEEEcCCCceeeccc
Confidence            888899999999999993  67777643 333   11                    12356799999999998777777


Q ss_pred             cCCeEEE
Q 040307          330 FVNKLQL  336 (339)
Q Consensus       330 ~d~~v~~  336 (339)
                      ..|.+.+
T Consensus       276 ~~G~v~~  282 (737)
T KOG1524|consen  276 STGQLIV  282 (737)
T ss_pred             cCceEEE
Confidence            7776644

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=2.3e-19  Score=145.50  Aligned_cols=268  Identities=13%  Similarity=0.171  Sum_probs=207.2

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      ....+.+.++.+   |.+|+.|+    ..|.|..+||......+.      +.-...|..+.|..+.     +++|++-.
T Consensus       129 eFGPY~~~ytrn---GrhlllgG----rKGHlAa~Dw~t~~L~~E------i~v~Etv~Dv~~LHne-----q~~AVAQK  190 (545)
T KOG1272|consen  129 EFGPYHLDYTRN---GRHLLLGG----RKGHLAAFDWVTKKLHFE------INVMETVRDVTFLHNE-----QFFAVAQK  190 (545)
T ss_pred             ccCCeeeeecCC---ccEEEecC----Cccceeeeecccceeeee------eehhhhhhhhhhhcch-----HHHHhhhh
Confidence            457788999999   99999999    799999988876544433      4556789999999998     89999987


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                       .++|||-..-+   +.-++.+      ..|..+.|-| ..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+
T Consensus       191 ~y~yvYD~~GtE---lHClk~~------~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN  260 (545)
T KOG1272|consen  191 KYVYVYDNNGTE---LHCLKRH------IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN  260 (545)
T ss_pred             ceEEEecCCCcE---Eeehhhc------Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence             99999976554   4444444      5899999998 77889999999999999999999999998778888888888


Q ss_pred             C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307          176 G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH  254 (339)
Q Consensus       176 ~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~  254 (339)
                      | +..+-+|...|+|.+|.....+....+..   |.++|.++++.+ +|+|+++.+.|.. ++|||++...+ +.++.. 
T Consensus       261 P~NaVih~GhsnGtVSlWSP~skePLvKiLc---H~g~V~siAv~~-~G~YMaTtG~Dr~-~kIWDlR~~~q-l~t~~t-  333 (545)
T KOG1272|consen  261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILC---HRGPVSSIAVDR-GGRYMATTGLDRK-VKIWDLRNFYQ-LHTYRT-  333 (545)
T ss_pred             CccceEEEcCCCceEEecCCCCcchHHHHHh---cCCCcceEEECC-CCcEEeecccccc-eeEeeeccccc-cceeec-
Confidence            5 56777888999999999998886666554   678999999998 9999999999999 99999998554 344433 


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      ..+...+++|..|  +||.+ ....|.||.=.....      + ....|.+.....++|.++.|+|-.. ++..+.
T Consensus       334 p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d~~~~s------~-~~~~pYm~H~~~~~V~~l~FcP~ED-vLGIGH  398 (545)
T KOG1272|consen  334 PHPASNLSLSQKG--LLALS-YGDHVQIWKDALKGS------G-HGETPYMNHRCGGPVEDLRFCPYED-VLGIGH  398 (545)
T ss_pred             CCCcccccccccc--ceeee-cCCeeeeehhhhcCC------C-CCCcchhhhccCcccccceeccHHH-eeeccc
Confidence            4567788998876  45544 445799995333220      0 0122444444566899999999764 554443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=5e-17  Score=141.22  Aligned_cols=234  Identities=14%  Similarity=0.125  Sum_probs=155.7

Q ss_pred             CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCC
Q 040307           45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKT  119 (339)
Q Consensus        45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~  119 (339)
                      +..|.+|+++..  ...   .+ ..+...+...+|+|++     +.|+..+    + .|++||+.+++...+..+.++  
T Consensus       183 ~~~i~i~d~dg~--~~~---~l-t~~~~~v~~p~wSPDG-----~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~--  249 (429)
T PRK01742        183 PYEVRVADYDGF--NQF---IV-NRSSQPLMSPAWSPDG-----SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH--  249 (429)
T ss_pred             eEEEEEECCCCC--Cce---Ee-ccCCCccccceEcCCC-----CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc--
Confidence            467888665533  322   22 5677889999999999     7777654    2 799999988764344444433  


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEE--ECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEEC
Q 040307          120 SEFSSAITSFDWAGFDTRRVATCS-VDTTCVIW--DIDREILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDL  194 (339)
Q Consensus       120 ~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~--d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~  194 (339)
                            ....+|+| +++.|+.+. .+|.+.||  |+.+++ ...+..+...+....|+ +++.|+.++ .++...+|++
T Consensus       250 ------~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        250 ------NGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             ------cCceeECC-CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence                  33689998 898888764 67765554  665554 44555666778899999 777666554 5788888887


Q ss_pred             CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307          195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV  274 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  274 (339)
                      ...........   +..  ....|+| +++.|+..+.++  +.+||+... .. ..+..+ .....+.|+|++ ++|+.+
T Consensus       322 ~~~~~~~~~l~---~~~--~~~~~Sp-DG~~ia~~~~~~--i~~~Dl~~g-~~-~~lt~~-~~~~~~~~sPdG-~~i~~~  389 (429)
T PRK01742        322 SASGGGASLVG---GRG--YSAQISA-DGKTLVMINGDN--VVKQDLTSG-ST-EVLSST-FLDESPSISPNG-IMIIYS  389 (429)
T ss_pred             ECCCCCeEEec---CCC--CCccCCC-CCCEEEEEcCCC--EEEEECCCC-Ce-EEecCC-CCCCCceECCCC-CEEEEE
Confidence            54332222222   222  4578998 888888777654  777998763 32 222221 234578899999 599999


Q ss_pred             eCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          275 ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       275 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      +.++...+|++....          ......+..|.+.+...+|+|-
T Consensus       390 s~~g~~~~l~~~~~~----------G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        390 STQGLGKVLQLVSAD----------GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EcCCCceEEEEEECC----------CCceEEccCCCCCCCCcccCCC
Confidence            889999988875432          0123344467778899999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=4e-17  Score=144.91  Aligned_cols=245  Identities=15%  Similarity=0.145  Sum_probs=174.3

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEc-CCCCCEEEEEeCCCeE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWA-GFDTRRVATCSVDTTC  148 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~d~~v  148 (339)
                      .+...+.|+|-.     ..++++.+  .|++||.+.++  ....|..+.  .....|+.+.+- ..|..++++|+.||.|
T Consensus      1065 ~~pk~~~~hpf~-----p~i~~ad~r~~i~vwd~e~~~--~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFE-----PQIAAADDRERIRVWDWEKGR--LLNGFDNGA--FPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred             CCCceeeecCCC-----ceeEEcCCcceEEEEecccCc--eeccccCCC--CCCCccceeeeecccchhheeeeccCceE
Confidence            346778899998     77777774  99999999887  555555433  122578888874 3366799999999999


Q ss_pred             EEEECCC-----Ceeeeeeecc-------CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307          149 VIWDIDR-----EILETQLVAH-------DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       149 ~i~d~~~-----~~~~~~~~~~-------~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  215 (339)
                      +||+--.     .+.+..+.+-       .+.-.-+.|. ...+|+++|.-..|+|||........-+...  ...-+++
T Consensus      1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--s~t~vTa 1213 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--SSTLVTA 1213 (1387)
T ss_pred             EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--CCcccee
Confidence            9997422     2223222211       1111235566 4555666666889999999987755544433  3456777


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR  291 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~  291 (339)
                      +.-+-..|+.+++|..||. |++||.|....  ++...+.|+..  |..+.+.+.|-.-|++|+.||.|++||++...  
T Consensus      1214 LS~~~~~gn~i~AGfaDGs-vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGS-VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred             ecccccCCceEEEeecCCc-eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence            7666557899999999999 99999997543  66777888877  99999999875459999999999999999954  


Q ss_pred             CCCCCCCCcccceeeecc---cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          292 SGNGGPSGDVEPELCYQS---MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                              ......+..|   .+..+++..|++.+.+++|+. +.|.||++
T Consensus      1291 --------~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1291 --------KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             --------ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence                    1123333333   335999999999984444445 99999975

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=5.3e-17  Score=135.29  Aligned_cols=284  Identities=13%  Similarity=0.128  Sum_probs=198.1

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEE-EEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-CceEEEEcCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRL-AVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-TPTNIAFFPSEETL   86 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~l-a~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~   86 (339)
                      +.+..|.++..-+.|..+||   |+|+ |+|.    +.-.|++|++..-..++..      .... .|.-.-.+.|-+  
T Consensus        43 eLiQdfe~p~ast~ik~s~D---GqY~lAtG~----YKP~ikvydlanLSLKFER------hlDae~V~feiLsDD~S--  107 (703)
T KOG2321|consen   43 ELIQDFEMPTASTRIKVSPD---GQYLLATGT----YKPQIKVYDLANLSLKFER------HLDAEVVDFEILSDDYS--  107 (703)
T ss_pred             HHHHhcCCccccceeEecCC---CcEEEEecc----cCCceEEEEcccceeeeee------cccccceeEEEeccchh--
Confidence            45677888999999999999   8866 5566    7999999887765555443      2223 333333444442  


Q ss_pred             CCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           87 NPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        87 ~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                        +.+.-..| .|.+-.-- +   ....+.-.      ..-.+|+++..+..+++. +....|+-++++.|+.+..+...
T Consensus       108 --K~v~L~~DR~IefHak~-G---~hy~~RIP------~~GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~  174 (703)
T KOG2321|consen  108 --KSVFLQNDRTIEFHAKY-G---RHYRTRIP------KFGRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETD  174 (703)
T ss_pred             --hheEeecCceeeehhhc-C---eeeeeecC------cCCccccccCCCccEEEe-ecCcceEEEEccccccccccccc
Confidence              44445555 55543322 1   11112111      234567777545555554 44567888899999999988877


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC---C-----CCCeEEEEEecCCCCeEEEEeeCCCeE
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV---Q-----DCPLLRLEWNKADPRFMATVGMDSNKV  236 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~-----~~~v~~~~~~p~~~~~l~~~~~d~~~i  236 (339)
                      .+.++++..+ -..+|++|+.+|.|..||.|.......+.....   +     ...|+++.|+ ++|-.+++|+.+|. +
T Consensus       175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~-v  252 (703)
T KOG2321|consen  175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGS-V  252 (703)
T ss_pred             cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCc-E
Confidence            7899999999 577888888899999999999876555433211   2     2348999998 47999999999999 9


Q ss_pred             EEEecCCCCCceEEEecCCCCeeEEEeccCCC-CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE
Q 040307          237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG-RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV  315 (339)
Q Consensus       237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  315 (339)
                      .|||++.....+..-.+..-+|..+.|.+.+. ..+++. ....++|||-.+++             +.........++.
T Consensus       253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk-------------~~asiEpt~~lND  318 (703)
T KOG2321|consen  253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK-------------PMASIEPTSDLND  318 (703)
T ss_pred             EEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC-------------ceeeccccCCcCc
Confidence            99999984443333344456899999988742 244444 45789999999998             6766666677999


Q ss_pred             EEecCCCCceEEEecCCeEEE
Q 040307          316 VRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       316 ~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      +++-|++..++++-.+..+..
T Consensus       319 ~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  319 FCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             eeeecCCceEEEecCCCccee
Confidence            999999877777766665543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.79  E-value=1.9e-16  Score=121.63  Aligned_cols=288  Identities=16%  Similarity=0.145  Sum_probs=193.1

Q ss_pred             ccEEEEeee--ccc------cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEe--CCcEEE
Q 040307           32 KSRLAVGSF--LED------YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATS--GDSLRL  100 (339)
Q Consensus        32 ~~~la~g~~--~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~--~~~i~i  100 (339)
                      .+.||+|++  ..+      ..|++.+|++.........  .+...-...+..+.|..-....  . .++-+  .+.|.+
T Consensus        24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~--~~q~~dts~~~dm~w~~~~~~g--~~~l~~a~a~G~i~~   99 (339)
T KOG0280|consen   24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLD--TLQCTDTSTEFDMLWRIRETDG--DFNLLDAHARGQIQL   99 (339)
T ss_pred             cceEEEeeEEecCCCCchheeccceEEEeecccccCccc--eeeeecccccceeeeeeccCCc--cceeeeccccceEEE
Confidence            348999987  111      4578888777654433311  2212334567888887533211  3 22222  238888


Q ss_pred             EeecCCcceeEEEeecCCCccCC-CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--eeeeeccCCceeEEEec--
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFS-SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL--ETQLVAHDREVYDISWG--  175 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~--  175 (339)
                      +.....+  ....+++-...... ....++.|++ .+..++++..+|.+.+-+......  ++.++.|.-+++-..|+  
T Consensus       100 ~r~~~~~--ss~~L~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~  176 (339)
T KOG0280|consen  100 YRNDEDE--SSVHLRGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK  176 (339)
T ss_pred             Eeeccce--eeeeecccchhhhhheeeeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC
Confidence            8876654  33334332211111 1245788997 888899999999999666555443  34778999999999999  


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC
Q 040307          176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE  255 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~  255 (339)
                      +.+++.+|+.|+.+..||+|.+... .......|...|.++.-+|..+.++++|+.|.. |++||.|+.++|+..-.. .
T Consensus       177 ~pnlvytGgDD~~l~~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~v-~  253 (339)
T KOG0280|consen  177 EPNLVYTGGDDGSLSCWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAKV-G  253 (339)
T ss_pred             CCceEEecCCCceEEEEEecCCcce-eeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCcc-c
Confidence            6799999999999999999955522 222233467889999999989999999999999 999999988998876654 5


Q ss_pred             CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEe-cCC
Q 040307          256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIA-FVN  332 (339)
Q Consensus       256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~-~d~  332 (339)
                      +.|+.+.++|.-...|+.+..-+-.+|-+.+....         ..+..  ....|.+-.+.-.|......+++++ .|+
T Consensus       254 GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~---------e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk  324 (339)
T KOG0280|consen  254 GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL---------EFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK  324 (339)
T ss_pred             cceEEEEecchhhhHHHHHHHhcCceEEEeccccc---------chheeeeccccccceeeccccccccceeeeeecccc
Confidence            78999999997533444555555678888877650         00111  2335777888889965544344443 788


Q ss_pred             eEE-EEe
Q 040307          333 KLQ-LLK  338 (339)
Q Consensus       333 ~v~-~w~  338 (339)
                      .++ +|-
T Consensus       325 ~~~~~Wl  331 (339)
T KOG0280|consen  325 KIRQLWL  331 (339)
T ss_pred             ceeeeee
Confidence            855 773

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=7e-17  Score=128.57  Aligned_cols=249  Identities=16%  Similarity=0.155  Sum_probs=178.4

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccccee---eEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN---RLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ...|.+++|.-+++ .+.|...+    .+..+..+.+.  ...+....   .........|..++... +     .++.+
T Consensus        55 ~~ris~l~~~~d~~-tevl~~r~----~~~~~~~~~~~--E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g-----~Litc  121 (412)
T KOG3881|consen   55 LDRISSLLFGVDGE-TEVLNARS----ADDDLPKFVIE--EFEISSSLDDAKTVSLGTKSIKGLKLAD-G-----TLITC  121 (412)
T ss_pred             hhhhhhheeecCCc-eeEeeccc----cCccccccccc--CCccccccccccccccccccccchhhcC-C-----EEEEE
Confidence            35677888886633 33343333    24555553333  22222200   01123456677777653 3     34444


Q ss_pred             eCC-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeecc---
Q 040307           94 SGD-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--TTCVIWDIDREILETQLVAH---  165 (339)
Q Consensus        94 ~~~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~---  165 (339)
                      -++ .+.+|..+.+.  ......+..+      ..+..+.-++.....+++|+..  ..+.+||+++.+.+.+-+.-   
T Consensus       122 ~~sG~l~~~~~k~~d~hss~l~~la~g------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD  195 (412)
T KOG3881|consen  122 VSSGNLQVRHDKSGDLHSSKLIKLATG------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND  195 (412)
T ss_pred             ecCCcEEEEeccCCccccccceeeecC------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence            444 99999998543  2244444444      4667777777677888889998  89999999887655443321   


Q ss_pred             ------CCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeE
Q 040307          166 ------DREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKV  236 (339)
Q Consensus       166 ------~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i  236 (339)
                            .-.++++.|- +  ...|+++..-+.+++||.+.++.+...+..  .+.++.++...| +++++++|..-+. +
T Consensus       196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~--~E~~is~~~l~p-~gn~Iy~gn~~g~-l  271 (412)
T KOG3881|consen  196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF--LENPISSTGLTP-SGNFIYTGNTKGQ-L  271 (412)
T ss_pred             cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc--ccCcceeeeecC-CCcEEEEecccch-h
Confidence                  1245778887 3  789999999999999999998877776666  567999999998 9999999999998 9


Q ss_pred             EEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..||++....+...+.+-.+.|++|..+|.+ .+|++++-|..|+|+|+++..
T Consensus       272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             heecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccch
Confidence            9999998555555688889999999999999 599999999999999999965

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.4e-16  Score=122.09  Aligned_cols=248  Identities=14%  Similarity=0.203  Sum_probs=167.0

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      +-.+.-++|++.   -..+|++.    .|..|++|+-+.  ....   .+....+..|+|++|-|.+.    .-|+.|..
T Consensus        98 ~~dlr~~aWhqH---~~~fava~----nddvVriy~kss--t~pt---~Lks~sQrnvtclawRPlsa----selavgCr  161 (445)
T KOG2139|consen   98 EIDLRGVAWHQH---IIAFAVAT----NDDVVRIYDKSS--TCPT---KLKSVSQRNVTCLAWRPLSA----SELAVGCR  161 (445)
T ss_pred             hcceeeEeechh---hhhhhhhc----cCcEEEEeccCC--CCCc---eecchhhcceeEEEeccCCc----ceeeeeec
Confidence            346788999998   88889999    699999965443  2221   23345677899999999986    67888876


Q ss_pred             -cEEEEeecCCc--ceeEEEeecC-----CCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeeeccCC
Q 040307           97 -SLRLWEIHDDR--TELKSLLNSN-----KTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        97 -~i~iw~~~~~~--~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~  167 (339)
                       -|.||..+...  ...+.....|     +..+| .+|++|.|++ |+..+++++. |..|.|||..++..+.......+
T Consensus       162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence             99999876432  0011111111     11223 6999999998 8988888875 67899999998876555434456


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      .+.-+.|+ ++++|+++.-|+..++|..........-...   .+.|...+|+| .|+.|+......  -.+|.+...++
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg---sgrvqtacWsp-cGsfLLf~~sgs--p~lysl~f~~~  313 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG---SGRVQTACWSP-CGSFLLFACSGS--PRLYSLTFDGE  313 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc---CCceeeeeecC-CCCEEEEEEcCC--ceEEEEeecCC
Confidence            78899999 7999999999999999965444322222222   35899999999 777665544433  45555543222


Q ss_pred             ceE--------------EE-----ecC----CCCeeEEEeccCCCCeEEEEeCCC--------cEEEEEecCCC
Q 040307          247 PVV--------------VL-----SKH----EGSVNGISWAPLYGRRLCSVADDS--------RALIWEVVGPG  289 (339)
Q Consensus       247 ~~~--------------~~-----~~~----~~~v~~~~~~p~~~~~l~~~~~dg--------~v~iwd~~~~~  289 (339)
                      +..              .+     ...    .+++.+++|.|.|+ +||+.-..+        .|.+||.+...
T Consensus       314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhcccccC
Confidence            110              11     011    35788999999995 888766433        36667666544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.1e-17  Score=138.25  Aligned_cols=234  Identities=15%  Similarity=0.229  Sum_probs=165.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEE-eecCCcceeEEEeecCCCccCCCCEEE---EEEcC-CCCCEEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLW-EIHDDRTELKSLLNSNKTSEFSSAITS---FDWAG-FDTRRVAT  141 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~-~~~~~l~~  141 (339)
                      ..|...|.|+.|+...     .++.+++| .+.+| ++.+...+........-     .+...   ..--. .....|+.
T Consensus        11 ~r~~e~vc~v~w~~~e-----ei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~-----pt~~h~~~rs~~~g~~~d~~~i   80 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNE-----EIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFV-----PTDMHLGGRSSGGGKGSDTLLI   80 (737)
T ss_pred             cccceeEEeecccccc-----eEEEeccCceEEEeecccchhhhhhhCCcccC-----CccccccccccCCCCCcceEEE
Confidence            3566677899999988     78888877 55555 44443311111111100     01000   00000 13457888


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307          142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p  220 (339)
                      ++.||.+.+.+- .++..+.+.+|.+.+.+-.|+ +|.-|++++.||.|++|.-...- ...+..   ...+|.|++|.|
T Consensus        81 ~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl~Q---~~~~v~c~~W~p  155 (737)
T KOG1524|consen   81 CSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTVVQ---NEESIRCARWAP  155 (737)
T ss_pred             EcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHHhh---cCceeEEEEECC
Confidence            899999999874 566777888999999999999 89999999999999999844332 222222   246899999999


Q ss_pred             CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          221 ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       221 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      +..+.+++.+.  . +.|=-+.. ...+...++|.+-|.++.|+|.. .++++|++|-..+|||.....           
T Consensus       156 ~S~~vl~c~g~--h-~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~-----------  219 (737)
T KOG1524|consen  156 NSNSIVFCQGG--H-ISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN-----------  219 (737)
T ss_pred             CCCceEEecCC--e-EEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-----------
Confidence            66666665432  2 66666665 34456788999999999999998 599999999999999988765           


Q ss_pred             ccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                        ......|..+|++++|.|+ . +++.+.-+++|+
T Consensus       220 --Lf~S~~~ey~ITSva~npd-~-~~~v~S~nt~R~  251 (737)
T KOG1524|consen  220 --LFTSAAEEYAITSVAFNPE-K-DYLLWSYNTARF  251 (737)
T ss_pred             --cccCChhccceeeeeeccc-c-ceeeeeeeeeee
Confidence              5566779999999999999 3 555555555553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.3e-16  Score=137.60  Aligned_cols=234  Identities=15%  Similarity=0.158  Sum_probs=170.3

Q ss_pred             EEEEcCCCCCCCCCeEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEE
Q 040307           76 NIAFFPSEETLNPDIVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT--RRVATCSVDTTCVIWD  152 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d  152 (339)
                      ...|++|+     +.+.... +.|.||...+++  ++..+.+|.     .+++.+.+.|...  .++.+++.+|.|++||
T Consensus        21 ~avfSnD~-----k~l~~~~~~~V~VyS~~Tg~--~i~~l~~~~-----a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   21 PAVFSNDA-----KFLFLCTGNFVKVYSTATGE--CITSLEDHT-----APLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             ccccccCC-----cEEEEeeCCEEEEEecchHh--hhhhccccc-----CccceeeecCCCccceEEEEEecCccEEEec
Confidence            34689999     5555555 599999999998  888999998     8999999987544  4677999999999999


Q ss_pred             CCCCeeeeeeeccCCceeE-----------------------------------------------------------EE
Q 040307          153 IDREILETQLVAHDREVYD-----------------------------------------------------------IS  173 (339)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~-----------------------------------------------------------~~  173 (339)
                      ...+..++++..+. ++..                                                           +.
T Consensus        89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~  167 (792)
T KOG1963|consen   89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV  167 (792)
T ss_pred             CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence            98887666553211 1111                                                           11


Q ss_pred             ecCCcEEEEEeCCCcEEEEECCCCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC---CCCceE
Q 040307          174 WGGFNVFASVSGDCSVRVFDLRDKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF---PTNPVV  249 (339)
Q Consensus       174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~---~~~~~~  249 (339)
                      ++++..+.....+..+.+|...+...... ......|...+++.+++| +++++|++..||. |.+|.--.   ......
T Consensus       168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGr-I~vw~d~~~~~~~~t~t  245 (792)
T KOG1963|consen  168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGR-ILVWRDFGSSDDSETCT  245 (792)
T ss_pred             EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCc-EEEEeccccccccccce
Confidence            11111111122233445555544331110 011123555678999999 9999999999999 99995322   223456


Q ss_pred             EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      .+.-|...|.+++|+++| .+|++|+.++.+.+|.+.+++             +.....-.++|..+.+|||+.......
T Consensus       246 ~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~-------------kqfLPRLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGK-------------KQFLPRLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             EEEecccccceeEEecCC-ceEeecccceEEEEEeecCCC-------------cccccccCCeeEEEEEcCCCCeEEEEe
Confidence            778899999999999999 599999999999999999988             566667788999999999998777788


Q ss_pred             cCCeEEEEe
Q 040307          330 FVNKLQLLK  338 (339)
Q Consensus       330 ~d~~v~~w~  338 (339)
                      .|+.|.+.+
T Consensus       312 ~DNqI~li~  320 (792)
T KOG1963|consen  312 EDNQIHLIK  320 (792)
T ss_pred             cCceEEEEe
Confidence            999998865

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.5e-17  Score=133.54  Aligned_cols=198  Identities=21%  Similarity=0.268  Sum_probs=151.7

Q ss_pred             eEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307           75 TNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD  152 (339)
Q Consensus        75 ~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d  152 (339)
                      .+++|++++     ..+++++ | .+|||++....  .......|.     ..|.++.|+| |++.|++-+.| ..+||+
T Consensus       148 k~vaf~~~g-----s~latgg~dg~lRv~~~Ps~~--t~l~e~~~~-----~eV~DL~FS~-dgk~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGDG-----SKLATGGTDGTLRVWEWPSML--TILEEIAHH-----AEVKDLDFSP-DGKFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCCC-----CEeeeccccceEEEEecCcch--hhhhhHhhc-----CccccceeCC-CCcEEEEecCC-ceEEEE
Confidence            578999999     8999987 5 99999987765  444555555     8999999998 99999999999 999999


Q ss_pred             CCCCeeeeeee--ccCCceeEEEec-CC---c--EEEEEeCCCcEEEEECCCCccee--eEEeCCCCCCCeEEEEEecCC
Q 040307          153 IDREILETQLV--AHDREVYDISWG-GF---N--VFASVSGDCSVRVFDLRDKERST--IIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       153 ~~~~~~~~~~~--~~~~~v~~~~~~-~~---~--~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      .+++..+....  .-......+.|+ ++   .  +++....-+.|+.||+...+...  ...........|.+++.++ +
T Consensus       214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-d  292 (398)
T KOG0771|consen  214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-D  292 (398)
T ss_pred             eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-C
Confidence            99997666553  222345677888 44   2  23333445678887776544311  1111111235799999997 9


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |++++.|+.+|. |.|++..........-+.|...|+.+.|+|+. +.+++.+.|....|..+....
T Consensus       293 Gkf~AlGT~dGs-Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  293 GKFLALGTMDGS-VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             CcEEEEeccCCc-EEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeecc
Confidence            999999999999 99999988665556667899999999999998 699999999999999888754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.5e-17  Score=134.57  Aligned_cols=289  Identities=16%  Similarity=0.218  Sum_probs=211.2

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|++.|..+.|+..   |..|++|+    .|..|.+|+|.........    ..+|...|....|.|....   +-++++
T Consensus       140 ~H~GcVntV~FN~~---Gd~l~SgS----DD~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~d---~ti~~~  205 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQR---GDVLASGS----DDLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSGD---RTIVTS  205 (559)
T ss_pred             CCCCccceeeeccc---CceeeccC----ccceEEeehhhccCccccc----ccccccchhhhhccCCCCC---cCceec
Confidence            36789999999999   99999999    8999999999987766654    5689999999999987642   445555


Q ss_pred             C-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCC-
Q 040307           95 G-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDR-  167 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~-  167 (339)
                      + + .+++=.+.... .+....+..|.     ++|..++.-|.+...|.+++.|+.+.-+|++++.+...+   ..+.. 
T Consensus       206 s~dgqvr~s~i~~t~~~e~t~rl~~h~-----g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENTKRLAPHE-----GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             cccCceeeeeeccccceecceeccccc-----CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            5 5 88877665443 23345566676     899999999988899999999999999999887644333   22333 


Q ss_pred             --ceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceee-----EEeC----CCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307          168 --EVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTI-----IYEN----PVQDCPLLRLEWNKADPRFMATVGMDSN  234 (339)
Q Consensus       168 --~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~d~~  234 (339)
                        ....++..  +.+.+++++.|..+++||.+.-.....     .+..    ......|++++|+...+.+|++ -.|..
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~  359 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDED  359 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccc
Confidence              45677777  467899999999999999986543211     0110    0234578999999634445554 45555


Q ss_pred             eEEEEecCCCC-----------CceEE-EecCCC--CeeEEEe-ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          235 KVVVLDIRFPT-----------NPVVV-LSKHEG--SVNGISW-APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       235 ~i~i~d~~~~~-----------~~~~~-~~~~~~--~v~~~~~-~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                       |+++.-....           ..+.. +++|..  .|..+-| -|.. .++++|+.=|.|.||+-.+.+          
T Consensus       360 -IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~e----------  427 (559)
T KOG1334|consen  360 -IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGE----------  427 (559)
T ss_pred             -eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhH----------
Confidence             9999443211           11222 567754  5777765 5676 599999999999999999887          


Q ss_pred             cccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          300 DVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       300 ~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                         .+ .+.+...-|+|+.-+|.-+.|++.+-|.-|+||-
T Consensus       428 ---ii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  428 ---IIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             ---HHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence               33 2233344899999999999888889999999994

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4e-16  Score=123.19  Aligned_cols=237  Identities=15%  Similarity=0.185  Sum_probs=161.1

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC  148 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v  148 (339)
                      +..+..++|++.-     ..+|.+. | .|++|+-....   ...++...    ...|++++|-|..+..|+.|.. +.|
T Consensus        98 ~~dlr~~aWhqH~-----~~fava~nddvVriy~ksst~---pt~Lks~s----QrnvtclawRPlsaselavgCr-~gI  164 (445)
T KOG2139|consen   98 EIDLRGVAWHQHI-----IAFAVATNDDVVRIYDKSSTC---PTKLKSVS----QRNVTCLAWRPLSASELAVGCR-AGI  164 (445)
T ss_pred             hcceeeEeechhh-----hhhhhhccCcEEEEeccCCCC---Cceecchh----hcceeEEEeccCCcceeeeeec-cee
Confidence            4457889999976     5566665 4 99999987743   33333222    1689999999977777777765 668


Q ss_pred             EEEECCCC----e----------eeeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCCCCCCC
Q 040307          149 VIWDIDRE----I----------LETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENPVQDCP  212 (339)
Q Consensus       149 ~i~d~~~~----~----------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  212 (339)
                      .+|.....    +          .+....+| .+|++|+|. ++..+++++. |..|.|||..++........   ..+.
T Consensus       165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---glgg  240 (445)
T KOG2139|consen  165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---GLGG  240 (445)
T ss_pred             EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---CCCc
Confidence            89976421    1          11222344 589999999 8888888875 67899999999886665533   3467


Q ss_pred             eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307          213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS  292 (339)
Q Consensus       213 v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~  292 (339)
                      +.-+.|+| ++.+|++++-|+. .++|+.........-.. ..+.|....|+|+|+.+|++.+.  .-++|.+......+
T Consensus       241 ~slLkwSP-dgd~lfaAt~dav-frlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sg--sp~lysl~f~~~~~  315 (445)
T KOG2139|consen  241 FSLLKWSP-DGDVLFAATCDAV-FRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSG--SPRLYSLTFDGEDS  315 (445)
T ss_pred             eeeEEEcC-CCCEEEEecccce-eeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcC--CceEEEEeecCCCc
Confidence            88999999 9999999999999 99996654333333333 35599999999999766666664  45667666655222


Q ss_pred             CCCCCCCcccce--------eeec----ccceeEEEEecCCCCceEEEe
Q 040307          293 GNGGPSGDVEPE--------LCYQ----SMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       293 ~~~~~~~~~~~~--------~~~~----~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      ...++......+        .+..    ..+.+.+++|.|.|.+|+..-
T Consensus       316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            211122111111        1111    256789999999999877554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-15  Score=137.94  Aligned_cols=306  Identities=15%  Similarity=0.122  Sum_probs=199.0

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc-ccceeeEeec-CCCCceEEEEcCCCCCCCCCeE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD-FSADNRLIFD-HPYTPTNIAFFPSEETLNPDIV   91 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~l   91 (339)
                      ++|...+..++.++.  .+.++++|+    .||+|++|+...-.+. .......... ...++.++...+.+     +.+
T Consensus      1045 ~Ehs~~v~k~a~s~~--~~s~FvsgS----~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-----~~~ 1113 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE--HTSLFVSGS----DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-----DQF 1113 (1431)
T ss_pred             hhccccccceeecCC--CCceEEEec----CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-----CeE
Confidence            346777888888877  258999999    8999999987643332 1111122233 57789999999999     788


Q ss_pred             EEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEE-EEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeee
Q 040307           92 ATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSF-DWAGFDTR-RVATCSVDTTCVIWDIDREILETQL  162 (339)
Q Consensus        92 a~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~  162 (339)
                      |.++ | .|++.+++...     ..+......+.    .+.+..| +|...... .++.+...+.|..||+++......+
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~----~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK----DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccC----CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence            8877 4 89998887632     11111112111    1334333 44433444 7888999999999999887655544


Q ss_pred             e--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC--CeEEEEee-CCCeE
Q 040307          163 V--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP--RFMATVGM-DSNKV  236 (339)
Q Consensus       163 ~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~-d~~~i  236 (339)
                      +  ...+.|++++.+ -+++++.|...|.+.+||+|-+...... ..+ +..++..+..+|..+  ...++++. ..+.|
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw-~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW-EHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc-cCc-ccCCcceEEeeccCCCCceEEEecccCCCce
Confidence            3  334689999999 5889999999999999999988744443 333 347888888887554  56666555 44459


Q ss_pred             EEEecCCCCCceEEEecC-----------------CC--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC------
Q 040307          237 VVLDIRFPTNPVVVLSKH-----------------EG--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR------  291 (339)
Q Consensus       237 ~i~d~~~~~~~~~~~~~~-----------------~~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~------  291 (339)
                      .+|++.++ .....+...                 ..  ......+..-+ .++++|+.|..|+.||.......      
T Consensus      1268 s~wn~~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~ss~~~~~ 1345 (1431)
T KOG1240|consen 1268 STWNMETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEISSYAVPG 1345 (1431)
T ss_pred             eeeecccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccccccccC
Confidence            99999874 333333221                 01  11122222223 58999999999999998876521      


Q ss_pred             C---------------------CCC--------CCC------Ccccc---eeeecccceeEEEEecCCCC-ceEEEecCC
Q 040307          292 S---------------------GNG--------GPS------GDVEP---ELCYQSMAEINVVRWSPLEL-DWIAIAFVN  332 (339)
Q Consensus       292 ~---------------------~~~--------~~~------~~~~~---~~~~~~~~~i~~~~~~p~~~-~l~~~~~d~  332 (339)
                      +                     .++        ++.      ....+   .....|..+|+++++....+ .+++++.||
T Consensus      1346 ~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG 1425 (1431)
T KOG1240|consen 1346 PSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDG 1425 (1431)
T ss_pred             ccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCC
Confidence            0                     000        000      00000   01224778899999887664 466788999


Q ss_pred             eEEEEe
Q 040307          333 KLQLLK  338 (339)
Q Consensus       333 ~v~~w~  338 (339)
                      .|++|+
T Consensus      1426 ~IkiWk 1431 (1431)
T KOG1240|consen 1426 VIKIWK 1431 (1431)
T ss_pred             eeeecC
Confidence            999996

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=6.7e-18  Score=137.13  Aligned_cols=229  Identities=13%  Similarity=0.130  Sum_probs=184.8

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC  148 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v  148 (339)
                      .-..+.+.++.+|     +.++.|+.  .|..+|..+..  +...+...      ..|.++.|- ++.++||++ ....+
T Consensus       129 eFGPY~~~ytrnG-----rhlllgGrKGHlAa~Dw~t~~--L~~Ei~v~------Etv~Dv~~L-Hneq~~AVA-QK~y~  193 (545)
T KOG1272|consen  129 EFGPYHLDYTRNG-----RHLLLGGRKGHLAAFDWVTKK--LHFEINVM------ETVRDVTFL-HNEQFFAVA-QKKYV  193 (545)
T ss_pred             ccCCeeeeecCCc-----cEEEecCCccceeeeecccce--eeeeeehh------hhhhhhhhh-cchHHHHhh-hhceE
Confidence            3456889999999     77777774  99999999987  55555543      478899998 366666665 56899


Q ss_pred             EEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          149 VIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      +|||- .|..+..++.| ..|..+.|-| .-+|++++..|.++.-|+..++....+...   .+.+..++-+| -...+-
T Consensus       194 yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~---~G~~~vm~qNP-~NaVih  267 (545)
T KOG1272|consen  194 YVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG---AGRTDVMKQNP-YNAVIH  267 (545)
T ss_pred             EEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc---CCccchhhcCC-ccceEE
Confidence            99995 56667777655 4688999995 567778888999999999999866665544   56788889898 667888


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY  307 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  307 (339)
                      +|..+|. |.+|.... ..|+..+..|.++|.+|++.++| ++++|.+.|..++|||++...            ++....
T Consensus       268 ~GhsnGt-VSlWSP~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~------------ql~t~~  332 (545)
T KOG1272|consen  268 LGHSNGT-VSLWSPNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFY------------QLHTYR  332 (545)
T ss_pred             EcCCCce-EEecCCCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecccc------------ccceee
Confidence            8999998 99999887 77888899999999999999999 799999999999999999987            344333


Q ss_pred             cccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      . ..+...+++|..|  ++|.+....|.+|+
T Consensus       333 t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  333 T-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             c-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            3 5567888888875  78888888899985

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=1.1e-15  Score=126.60  Aligned_cols=254  Identities=12%  Similarity=0.157  Sum_probs=157.8

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC-CCeEEEeC-Cc
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN-PDIVATSG-DS   97 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~la~~~-~~   97 (339)
                      +....++-.   |++|+..-     ...+.+|++..............+.- ....|=+|+....... -++|+.-+ +.
T Consensus       126 ~~~~~~~~~---gd~lcFnv-----g~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGq  196 (636)
T KOG2394|consen  126 VTNTNQSGK---GDRLCFNV-----GRELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQ  196 (636)
T ss_pred             eeeccccCC---CCEEEEec-----CCeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCCCcceEEeeccCc
Confidence            334444444   77777765     57888888774332222111111222 2234444532221111 13444333 47


Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--  175 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--  175 (339)
                      +++.+....+...+.....+.  . ...|+++.|-|.+...++.+-.+|.+++||.+          +....+...|.  
T Consensus       197 vq~idp~~~~~sklfne~r~i--~-ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  197 VQLIDPINFEVSKLFNEERLI--N-KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQAL  263 (636)
T ss_pred             eEEecchhhHHHHhhhhcccc--c-ccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCccccc
Confidence            777776654322211111111  1 16899999999888899999999999999972          11122222232  


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307          176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH  254 (339)
Q Consensus       176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~  254 (339)
                       ++..|.....       --.....+...+..  .++.|...+|+| +|++||+.+.||. ++|||..+ .+.+..++..
T Consensus       264 k~~~~f~i~t~-------ksk~~rNPv~~w~~--~~g~in~f~FS~-DG~~LA~VSqDGf-LRvF~fdt-~eLlg~mkSY  331 (636)
T KOG2394|consen  264 KDGDQFAILTS-------KSKKTRNPVARWHI--GEGSINEFAFSP-DGKYLATVSQDGF-LRIFDFDT-QELLGVMKSY  331 (636)
T ss_pred             CCCCeeEEeee-------eccccCCccceeEe--ccccccceeEcC-CCceEEEEecCce-EEEeeccH-HHHHHHHHhh
Confidence             3444433221       11111112222222  235899999999 9999999999999 99999987 5566667777


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP  320 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p  320 (339)
                      -+...+++||||| ++|++|++|-.|.||.+....            ..-.-.+|...|+.|+|.|
T Consensus       332 FGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR------------VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  332 FGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR------------VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccceEEEEEcCCc-cEEEecCCcceEEEEEeccce------------EEEeccccccceeeEeecc
Confidence            7899999999999 799999999999999999877            1225568999999999983

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=5.5e-15  Score=115.56  Aligned_cols=274  Identities=16%  Similarity=0.237  Sum_probs=178.4

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      -+.|.-+.|..+   ..+++++.+   .++.|++|++...  +...  .+ ...+.++.++.|||+++    .+|.+.. 
T Consensus        48 ldki~yieW~ad---s~~ilC~~y---k~~~vqvwsl~Qp--ew~c--kI-deg~agls~~~WSPdgr----hiL~tseF  112 (447)
T KOG4497|consen   48 LDKIVYIEWKAD---SCHILCVAY---KDPKVQVWSLVQP--EWYC--KI-DEGQAGLSSISWSPDGR----HILLTSEF  112 (447)
T ss_pred             HHHhhheeeecc---ceeeeeeee---ccceEEEEEeecc--eeEE--Ee-ccCCCcceeeeECCCcc----eEeeeecc
Confidence            367888999999   888888876   7889999776544  3433  22 45677899999999994    4444444 


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------------------------
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----------------------------  145 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------------------------  145 (339)
                      + .|.+|.+.+.+.   ..++..+     ..+..++|+| ++++.+.++.-                             
T Consensus       113 ~lriTVWSL~t~~~---~~~~~pK-----~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg  183 (447)
T KOG4497|consen  113 DLRITVWSLNTQKG---YLLPHPK-----TNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG  183 (447)
T ss_pred             eeEEEEEEecccee---EEecccc-----cCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence            5 999999998752   2222222     4557778887 77776665431                             


Q ss_pred             -------CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcce-----------------
Q 040307          146 -------TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERS-----------------  200 (339)
Q Consensus       146 -------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-----------------  200 (339)
                             ..+.+||---.-.+..+ ...-.+..++|+| +++|+.|+.|+.+|+.+--+-+..                 
T Consensus       184 ieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~  262 (447)
T KOG4497|consen  184 IEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL  262 (447)
T ss_pred             ceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence                   12334442111111122 1234688899996 899999999998887542111000                 


Q ss_pred             ----------------------------------------eeE--E----eCCCCCCCeEEEEEecCCCCeEEEEeeCC-
Q 040307          201 ----------------------------------------TII--Y----ENPVQDCPLLRLEWNKADPRFMATVGMDS-  233 (339)
Q Consensus       201 ----------------------------------------~~~--~----~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-  233 (339)
                                                              ..+  .    ..+.....+.-++|++ +..++++-...- 
T Consensus       263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~P  341 (447)
T KOG4497|consen  263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYP  341 (447)
T ss_pred             hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCC
Confidence                                                    000  0    0012234566789998 888888754431 


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI  313 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (339)
                      +.+-+||++. .+ +..+-....+|....|+|..+ .|+.+.....+++|......             ........-.|
T Consensus       342 nalW~Wdlq~-l~-l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~psg~~-------------~V~vP~~GF~i  405 (447)
T KOG4497|consen  342 NALWLWDLQN-LK-LHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGPR-------------VVGVPKKGFNI  405 (447)
T ss_pred             ceEEEEechh-hh-hhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCce-------------EEecCCCCcee
Confidence            2489999986 32 333333467899999999986 77777767789999777644             33333445679


Q ss_pred             EEEEecCCCCceEEEecCC
Q 040307          314 NVVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       314 ~~~~~~p~~~~l~~~~~d~  332 (339)
                      ..+.|..+|..++..+.|.
T Consensus       406 ~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  406 QKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             eeEEecCCCcEEEEEcCCc
Confidence            9999999998877777664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=4.9e-16  Score=135.08  Aligned_cols=217  Identities=16%  Similarity=0.171  Sum_probs=143.6

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +...+.+.+|||+   ++.||+++. .+.+..|++|++..  +....   + ....+....++|+||+     +.|+.+.
T Consensus       202 ~~~~v~~p~wSPD---G~~la~~s~-~~~~~~i~i~dl~t--g~~~~---l-~~~~g~~~~~~wSPDG-----~~La~~~  266 (429)
T PRK01742        202 SSQPLMSPAWSPD---GSKLAYVSF-ENKKSQLVVHDLRS--GARKV---V-ASFRGHNGAPAFSPDG-----SRLAFAS  266 (429)
T ss_pred             CCCccccceEcCC---CCEEEEEEe-cCCCcEEEEEeCCC--CceEE---E-ecCCCccCceeECCCC-----CEEEEEE
Confidence            4567999999999   999999873 11234688866643  33222   1 1222334578999999     6666543


Q ss_pred             --C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCe-eeeeeeccCCc
Q 040307           96 --D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREI-LETQLVAHDRE  168 (339)
Q Consensus        96 --~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~-~~~~~~~~~~~  168 (339)
                        +   .|.+||+.+++   ...+..+.     ..+....|+| +++.|+.++ .++...||+++... ....+ .+.. 
T Consensus       267 ~~~g~~~Iy~~d~~~~~---~~~lt~~~-----~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-  335 (429)
T PRK01742        267 SKDGVLNIYVMGANGGT---PSQLTSGA-----GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-  335 (429)
T ss_pred             ecCCcEEEEEEECCCCC---eEeeccCC-----CCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence              3   45555665554   23344444     5677899998 888776555 57888888764322 22223 3333 


Q ss_pred             eeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC-CCCC
Q 040307          169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-FPTN  246 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~-~~~~  246 (339)
                       ....|+ +++.|+..+.++ +.+||+.+++.... ...    .....+.|+| ++++|+.++.++. ..+|++. ..+.
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~----~~~~~~~~sP-dG~~i~~~s~~g~-~~~l~~~~~~G~  406 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SST----FLDESPSISP-NGIMIIYSSTQGL-GKVLQLVSADGR  406 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cCC----CCCCCceECC-CCCEEEEEEcCCC-ceEEEEEECCCC
Confidence             457889 788888887764 66699988764322 211    1235678999 8999999988888 7777653 2356


Q ss_pred             ceEEEecCCCCeeEEEeccCC
Q 040307          247 PVVVLSKHEGSVNGISWAPLY  267 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p~~  267 (339)
                      ....+..|.+.+..++|+|--
T Consensus       407 ~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        407 FKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             ceEEccCCCCCCCCcccCCCC
Confidence            678888888889999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=2e-17  Score=143.40  Aligned_cols=239  Identities=18%  Similarity=0.222  Sum_probs=172.3

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |-..|+|+.|...   |.++++|+    .|..++||.  .++..+..  .. .+|.+.|+.++.+.+.     .++|+++
T Consensus       189 H~naVyca~fDrt---g~~Iitgs----dd~lvKiwS--~et~~~lA--s~-rGhs~ditdlavs~~n-----~~iaaaS  251 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRT---GRYIITGS----DDRLVKIWS--METARCLA--SC-RGHSGDITDLAVSSNN-----TMIAAAS  251 (1113)
T ss_pred             hhhheeeeeeccc---cceEeecC----ccceeeeee--ccchhhhc--cC-CCCccccchhccchhh-----hhhhhcc
Confidence            5678999999999   99999999    799999966  44444433  33 7999999999999988     7888888


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee---ee-ccCCce
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ---LV-AHDREV  169 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~---~~-~~~~~v  169 (339)
                       | .|++|.+.++.  ++..+.+|+     ++|++++|+| -    ++.+.||++++||.+-...+..   +. .....+
T Consensus       252 ~D~vIrvWrl~~~~--pvsvLrght-----gavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~  319 (1113)
T KOG0644|consen  252 NDKVIRVWRLPDGA--PVSVLRGHT-----GAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLV  319 (1113)
T ss_pred             cCceEEEEecCCCc--hHHHHhccc-----cceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccce
Confidence             5 89999999998  889999999     9999999999 2    3788999999999871100000   00 001112


Q ss_pred             eEEEec-CCcEEEE-------------------------------------EeCCCcEEEEECCCCcceeeEEeCCCCCC
Q 040307          170 YDISWG-GFNVFAS-------------------------------------VSGDCSVRVFDLRDKERSTIIYENPVQDC  211 (339)
Q Consensus       170 ~~~~~~-~~~~l~~-------------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  211 (339)
                      .++.|. .+.-+++                                     +-.+-.+.+|++.++..... ..  .|..
T Consensus       320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~-l~--ghsd  396 (1113)
T KOG0644|consen  320 DSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN-LM--GHSD  396 (1113)
T ss_pred             eeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhh-hc--cccc
Confidence            222222 2222222                                     22334455666666543222 22  2567


Q ss_pred             CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+..+.++|.+..+..+++.||. ..|||+-. +.|++........+..-+||++| ..++....-|.++|......+
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-g~pik~y~~gh~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCc-eEeeeccc-CCcceeeecccceeeccccCCCC-ceEecCCCCCceEEeccCCCc
Confidence            88899999999999999999999 99999987 55555444335567788999999 588888788899998776554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.4e-14  Score=125.74  Aligned_cols=232  Identities=13%  Similarity=0.098  Sum_probs=149.8

Q ss_pred             eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCcc
Q 040307           47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSE  121 (339)
Q Consensus        47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~  121 (339)
                      .|.+  ++.++.....   + ..+...+...+|+||+     +.|+..+    + .+.+|++.+++.+.+..+.+     
T Consensus       180 ~l~~--~d~dg~~~~~---l-t~~~~~~~~p~wSPDG-----~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~-----  243 (429)
T PRK03629        180 ELRV--SDYDGYNQFV---V-HRSPQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVRQVASFPR-----  243 (429)
T ss_pred             eEEE--EcCCCCCCEE---e-ecCCCceeeeEEcCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----
Confidence            5666  4444443332   1 4566789999999999     6666532    3 89999998876434433333     


Q ss_pred             CCCCEEEEEEcCCCCCEEEEE-eCCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC-Cc--EEEEEC
Q 040307          122 FSSAITSFDWAGFDTRRVATC-SVDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD-CS--VRVFDL  194 (339)
Q Consensus       122 ~~~~i~~~~~~~~~~~~l~~~-~~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-~~--i~i~d~  194 (339)
                         .+....|+| +++.|+.. +.+|  .|++||+++++... +..+...+....|+ +++.|+..+.+ +.  |.++|+
T Consensus       244 ---~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        244 ---HNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             ---CcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence               334689999 88887765 4444  58899998876543 43445567889999 78877766654 44  445566


Q ss_pred             CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307          195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC  272 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  272 (339)
                      .++..... ..   .........|+| +|+.|+..+.++.  .|.+||+... . ...+.. ........|+||| +.|+
T Consensus       319 ~~g~~~~l-t~---~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~-~~~~~~p~~SpDG-~~i~  389 (429)
T PRK03629        319 NGGAPQRI-TW---EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTD-TFLDETPSIAPNG-TMVI  389 (429)
T ss_pred             CCCCeEEe-ec---CCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCC-C-eEEeCC-CCCCCCceECCCC-CEEE
Confidence            66543222 21   123456789998 8888877655432  4888998763 2 334432 2234578999999 5888


Q ss_pred             EEeCCCc---EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          273 SVADDSR---ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       273 ~~~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      .++.++.   +.++++....             ...+..|.+.+...+|+|-
T Consensus       390 ~~s~~~~~~~l~~~~~~G~~-------------~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        390 YSSSQGMGSVLNLVSTDGRF-------------KARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEcCCCceEEEEEECCCCC-------------eEECccCCCCcCCcccCCC
Confidence            8777664   5666665444             3445567778999999983

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=5.8e-15  Score=117.80  Aligned_cols=244  Identities=13%  Similarity=0.129  Sum_probs=180.4

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEe-CC-cEEEEeecCCcceeEE----EeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATS-GD-SLRLWEIHDDRTELKS----LLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~-~~-~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .-...|..+.|.-+++.   .++... .+ .+..+.+.........    ......     .+|..+...  + ..|++|
T Consensus        53 ~~~~ris~l~~~~d~~t---evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~-----~~I~gl~~~--d-g~Litc  121 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGET---EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT-----KSIKGLKLA--D-GTLITC  121 (412)
T ss_pred             chhhhhhhheeecCCce---eEeeccccCcccccccccCCcccccccccccccccc-----ccccchhhc--C-CEEEEE
Confidence            34567889999877743   566665 34 7888877776522111    222222     677777764  3 567777


Q ss_pred             eCCCeEEEEECCCCe----eeeeeeccCCceeEEEec--CCcEEEEEeCC--CcEEEEECCCCcceeeEEeCCC------
Q 040307          143 SVDTTCVIWDIDREI----LETQLVAHDREVYDISWG--GFNVFASVSGD--CSVRVFDLRDKERSTIIYENPV------  208 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~------  208 (339)
                      -.+|.+.+|..+.+.    .+..+..+ ..+..|.-+  ...++++|+..  ..+.+||+...+..-.-...+.      
T Consensus       122 ~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr  200 (412)
T KOG3881|consen  122 VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR  200 (412)
T ss_pred             ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence            889999999987432    33444433 456667666  46788889998  8899999998742111111110      


Q ss_pred             CCCCeEEEEEecCC--CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          209 QDCPLLRLEWNKAD--PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       209 ~~~~v~~~~~~p~~--~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      -.-.++++.|-| .  ...|++++.-+. +++||.+....|+..+.....+++++...|.+ +++++|..-|.+..||++
T Consensus       201 VPvW~tdi~Fl~-g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  201 VPVWITDIRFLE-GSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eeeeeccceecC-CCCCceEEEEeccee-EEEecCcccCcceeEeccccCcceeeeecCCC-cEEEEecccchhheeccc
Confidence            123567788886 4  678899888887 99999999889999999889999999999999 699999999999999999


Q ss_pred             CCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          287 GPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...            -+. ...+..+.|.++..+|.++.++++|-|..|||+++
T Consensus       278 ~~k------------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  278 GGK------------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             Cce------------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence            987            122 24567899999999999998889999999999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.69  E-value=1.6e-14  Score=130.55  Aligned_cols=258  Identities=11%  Similarity=0.108  Sum_probs=168.8

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA  140 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  140 (339)
                      ..|...|..++.++...    .++++|++  +|++|+...-.     .+...++....     ..+.++...+ .++.+|
T Consensus      1045 ~Ehs~~v~k~a~s~~~~----s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~-----sr~~~vt~~~-~~~~~A 1114 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHT----SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG-----SRVEKVTMCG-NGDQFA 1114 (1431)
T ss_pred             hhccccccceeecCCCC----ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC-----CceEEEEecc-CCCeEE
Confidence            57888888998887764    79999995  99999987532     12222333222     6888898886 899999


Q ss_pred             EEeCCCeEEEEECCCCe-------eeeeeecc-CCce-eEEEec--CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCC
Q 040307          141 TCSVDTTCVIWDIDREI-------LETQLVAH-DREV-YDISWG--GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPV  208 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~~-------~~~~~~~~-~~~v-~~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  208 (339)
                      .++.||.|++.+++..+       ..+....+ .+.+ ..-+|.  ... .++.+..-+.|..||+++....-.....+ 
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~- 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL- 1193 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-
Confidence            99999999999987621       12222222 2233 333444  344 77888888999999999887444433332 


Q ss_pred             CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCC--CeEEEEe--CCCcEEEE
Q 040307          209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYG--RRLCSVA--DDSRALIW  283 (339)
Q Consensus       209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~--~~l~~~~--~dg~v~iw  283 (339)
                      ..+.|++++.+| .++.+++|+..|. +.+||+|- +.++.... .+..+++.+..+|..+  ...++++  ..+.|.+|
T Consensus      1194 ~hG~vTSi~idp-~~~WlviGts~G~-l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDP-WCNWLVIGTSRGQ-LVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             cccceeEEEecC-CceEEEEecCCce-EEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            347899999998 8889999999998 99999997 55665543 2346788888877643  3454444  56789999


Q ss_pred             EecCCCCCCC--C--CCC-CCccccee--eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          284 EVVGPGYRSG--N--GGP-SGDVEPEL--CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       284 d~~~~~~~~~--~--~~~-~~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++.++..+..  .  +.+ .....|..  ...+........+...+..+++++.|..||.|+.
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            9998862110  0  000 00000100  0011112223333344456789999999999973

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.69  E-value=3.1e-12  Score=108.13  Aligned_cols=281  Identities=16%  Similarity=0.136  Sum_probs=177.0

Q ss_pred             EEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-C---C--cEEEEeecCC--
Q 040307           35 LAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-G---D--SLRLWEIHDD--  106 (339)
Q Consensus        35 la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~---~--~i~iw~~~~~--  106 (339)
                      +.+|++..+..+.|.+|+++.+++.+.....  .........|+++|++     ++|.+. .   +  .|..|++...  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~--~~~~~~Ps~l~~~~~~-----~~LY~~~e~~~~~g~v~~~~i~~~~g   74 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT--VAEGENPSWLAVSPDG-----RRLYVVNEGSGDSGGVSSYRIDPDTG   74 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEE--EEESSSECCEEE-TTS-----SEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeee--ecCCCCCceEEEEeCC-----CEEEEEEccccCCCCEEEEEECCCcc
Confidence            4566642233489999999888888776333  2345567889999999     555544 2   2  8888888875  


Q ss_pred             cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCC-Ceeeee---ee----------ccCCceeE
Q 040307          107 RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDR-EILETQ---LV----------AHDREVYD  171 (339)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~-~~~~~~---~~----------~~~~~v~~  171 (339)
                      +...+.......     .....++++| ++++|+++.. +|.|.++++.. +.....   +.          .......+
T Consensus        75 ~L~~~~~~~~~g-----~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~  148 (345)
T PF10282_consen   75 TLTLLNSVPSGG-----SSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ  148 (345)
T ss_dssp             EEEEEEEEEESS-----SCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred             eeEEeeeeccCC-----CCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence            444444444222     4556799998 8888888764 89999999976 332221   11          11245678


Q ss_pred             EEec-CCcEEEEEe-CCCcEEEEECCCCcc-eee--EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          172 ISWG-GFNVFASVS-GDCSVRVFDLRDKER-STI--IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       172 ~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~-~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      +.++ +++++++.. ....|.+|++..... ...  .... ......+.++|+| +++++++..+....|.++++.....
T Consensus       149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g  226 (345)
T PF10282_consen  149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG  226 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC
Confidence            9999 677766654 345799999987652 211  1122 2346789999998 8888877776666699999883222


Q ss_pred             ceE---EEecC------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEEE
Q 040307          247 PVV---VLSKH------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINVV  316 (339)
Q Consensus       247 ~~~---~~~~~------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~  316 (339)
                      .+.   .....      ......|+++|+|..+.++...++.|.+|++....         +.+....... .......+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~---------g~l~~~~~~~~~G~~Pr~~  297 (345)
T PF10282_consen  227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT---------GTLTLVQTVPTGGKFPRHF  297 (345)
T ss_dssp             EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT---------TTEEEEEEEEESSSSEEEE
T ss_pred             ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC---------CceEEEEEEeCCCCCccEE
Confidence            222   22111      12577899999995444445577899999995432         0122222222 24458999


Q ss_pred             EecCCCCceEEEe-cCCeEEEEeC
Q 040307          317 RWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       317 ~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                      +++|+|++|+++. .++.|.+|++
T Consensus       298 ~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  298 AFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEecCCCeEEEEEE
Confidence            9999999888766 6778998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.6e-14  Score=122.65  Aligned_cols=237  Identities=14%  Similarity=0.167  Sum_probs=144.1

Q ss_pred             CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCc
Q 040307           46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTS  120 (339)
Q Consensus        46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~  120 (339)
                      +.-.||-++.++.....    ...+...+.+.+|+|++     +.|+..+    . .|.+||+.+++...+..+.     
T Consensus       174 ~~~~L~~~D~dG~~~~~----l~~~~~~v~~p~wSPDG-----~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-----  239 (427)
T PRK02889        174 NRYQLQISDADGQNAQS----ALSSPEPIISPAWSPDG-----TKLAYVSFESKKPVVYVHDLATGRRRVVANFK-----  239 (427)
T ss_pred             CccEEEEECCCCCCceE----eccCCCCcccceEcCCC-----CEEEEEEccCCCcEEEEEECCCCCEEEeecCC-----
Confidence            33445556655444332    24667789999999999     6776654    2 6999999888633322222     


Q ss_pred             cCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEE--CCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEEC-
Q 040307          121 EFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWD--IDREILETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDL-  194 (339)
Q Consensus       121 ~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d--~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~-  194 (339)
                         ..+....|+| +++.|+ +.+.+|...||.  +..+. ...+..+........|+ +++.|+..+. ++...+|.+ 
T Consensus       240 ---g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        240 ---GSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             ---CCccceEECC-CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence               3456889998 888776 456777766654  44443 44555555556778899 7887776554 456666655 


Q ss_pred             -CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeE
Q 040307          195 -RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRL  271 (339)
Q Consensus       195 -~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  271 (339)
                       .++........    .......+|+| +|++|+..+.++.  .|.+||+... . ...+.. ........|+|++. .|
T Consensus       315 ~~~g~~~~lt~~----g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~-~~~~~~p~~spdg~-~l  385 (427)
T PRK02889        315 ASGGAAQRVTFT----GSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATG-Q-VTALTD-TTRDESPSFAPNGR-YI  385 (427)
T ss_pred             CCCCceEEEecC----CCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCC-C-eEEccC-CCCccCceECCCCC-EE
Confidence             44332222222    12344678998 8888887665542  4999998763 3 233332 23456789999995 66


Q ss_pred             EEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          272 CSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       272 ~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      +.++ ..|.-.++-+....           ........+.+.+...+|+|-
T Consensus       386 ~~~~~~~g~~~l~~~~~~g-----------~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        386 LYATQQGGRSVLAAVSSDG-----------RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEecCCCEEEEEEECCC-----------CceEEeecCCCCCCCCccCCC
Confidence            5555 44443344333222           012233345667888899884

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=2.2e-15  Score=129.42  Aligned_cols=302  Identities=13%  Similarity=0.167  Sum_probs=213.0

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--CCCceEEEEcCCCCCCCC
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--PYTPTNIAFFPSEETLNP   88 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~~   88 (339)
                      -..+....++.++..+|.   |+-+|.++     .-.+.+.+++.....+..     ..|  .-.|-.+.|+|...  .|
T Consensus        18 slsl~v~~~~~a~si~p~---grdi~lAs-----r~gl~i~dld~p~~ppr~-----l~h~tpw~vad~qws~h~a--~~   82 (1081)
T KOG0309|consen   18 SLSLKVDGGFNAVSINPS---GRDIVLAS-----RQGLYIIDLDDPFTPPRW-----LHHITPWQVADVQWSPHPA--KP   82 (1081)
T ss_pred             eeEEEecCcccceeeccc---cchhhhhh-----hcCeEEEeccCCCCCcee-----eeccCcchhcceecccCCC--Cc
Confidence            344556789999999999   99999998     345566566655444443     233  34578889998764  23


Q ss_pred             CeEEEeCC-cEEEEeecCCcce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeecc
Q 040307           89 DIVATSGD-SLRLWEIHDDRTE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAH  165 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~  165 (339)
                      ..+++.+. ...+|++...... ....+.+|.     .+|+++.|+|+....+++++.|-.+..||+++.. ++.....-
T Consensus        83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghs-----raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w  157 (1081)
T KOG0309|consen   83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS-----RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW  157 (1081)
T ss_pred             eeEEecCcchhhhhhhhcCCccceEEEEecCc-----cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence            55666665 8889998765422 334566777     9999999999999999999999999999998865 45555444


Q ss_pred             CCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          166 DREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       166 ~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      ......++|+  +++.+++ +..+.|++||++.+..+......  |...+..+.|+......+.+.+.|++ |++||..+
T Consensus       158 ~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~k  233 (1081)
T KOG0309|consen  158 RSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSK  233 (1081)
T ss_pred             cccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhhhhhcccCCCCc-eeeecccc
Confidence            5567889999  5666655 45678999999999877666655  66788888988656667889999999 99999987


Q ss_pred             CCCceEEEecCCCCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCC
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPL  321 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~  321 (339)
                      ..+.-........+|+.-.+-|-|+.+++.-.. +..+.+++-+....   +-.......|+ ...+|...|..+.|-..
T Consensus       234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~---e~n~~~~~~pVh~F~GH~D~V~eFlWR~r  310 (1081)
T KOG0309|consen  234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL---EWNVFDLNTPVHTFVGHDDVVLEFLWRKR  310 (1081)
T ss_pred             cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhh---hhccccCCcceeeecCcchHHHHHhhhhc
Confidence            544444444456788888888987544443322 22444444433220   00000111243 66689999999988765


Q ss_pred             CC----------ceEEEecCCeEEEEeC
Q 040307          322 EL----------DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       322 ~~----------~l~~~~~d~~v~~w~v  339 (339)
                      +.          .|++-+.|..+|+|.|
T Consensus       311 ~e~~~d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  311 KECDGDYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             ccccCCCCccceeEEEeecCCceEeeec
Confidence            43          3889999999999975

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.1e-13  Score=120.79  Aligned_cols=231  Identities=13%  Similarity=0.150  Sum_probs=147.4

Q ss_pred             eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCcc
Q 040307           47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSE  121 (339)
Q Consensus        47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~  121 (339)
                      .|.+  ++.++.....    ...+...+.+.+|+||+     +.|+..+    + .|.+|++.+++..   .+..+.   
T Consensus       183 ~l~~--~d~dg~~~~~----lt~~~~~v~~p~wSpDG-----~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~---  245 (435)
T PRK05137        183 RLAI--MDQDGANVRY----LTDGSSLVLTPRFSPNR-----QEITYMSYANGRPRVYLLDLETGQRE---LVGNFP---  245 (435)
T ss_pred             EEEE--ECCCCCCcEE----EecCCCCeEeeEECCCC-----CEEEEEEecCCCCEEEEEECCCCcEE---EeecCC---
Confidence            4555  5555444432    24677889999999999     6666543    3 8999999887632   233333   


Q ss_pred             CCCCEEEEEEcCCCCCEEE-EEeCCCe--EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEEC
Q 040307          122 FSSAITSFDWAGFDTRRVA-TCSVDTT--CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDL  194 (339)
Q Consensus       122 ~~~~i~~~~~~~~~~~~l~-~~~~d~~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~  194 (339)
                        ..+...+|+| +++.|+ +.+.++.  |++||+.+++. ..+..+........|+ +++.|+..+. ++  .|+++|+
T Consensus       246 --g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        246 --GMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             --CcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence              4667889998 887765 5555554  77789887764 4455566667788999 7887776663 33  6888888


Q ss_pred             CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307          195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC  272 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  272 (339)
                      ..+..... ...   ...+....|+| +|+.|+....++.  .|.+||+.. + ....+. ....+..+.|+|+|. .|+
T Consensus       322 ~g~~~~~l-t~~---~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG~-~i~  392 (435)
T PRK05137        322 DGSNPRRI-SFG---GGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNGR-VIM  392 (435)
T ss_pred             CCCCeEEe-ecC---CCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCCC-EEE
Confidence            76653322 221   24566788999 8888877665432  488888754 2 233333 233577899999995 665


Q ss_pred             EEeC-CC-----cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          273 SVAD-DS-----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       273 ~~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      ..+. .+     .+.++|+....             ...+. ..+.+...+|+|-
T Consensus       393 ~~~~~~~~~~~~~L~~~dl~g~~-------------~~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        393 FFRQTPGSGGAPKLYTVDLTGRN-------------EREVP-TPGDASDPAWSPL  433 (435)
T ss_pred             EEEccCCCCCcceEEEEECCCCc-------------eEEcc-CCCCccCcccCCC
Confidence            5443 22     46666665544             22222 2345677888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.1e-13  Score=120.74  Aligned_cols=231  Identities=15%  Similarity=0.146  Sum_probs=145.9

Q ss_pred             eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCcc
Q 040307           47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSE  121 (339)
Q Consensus        47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~  121 (339)
                      .|.+||.  ++.....   + ..+...+.+.+|+|++     +.|+..+    + .|.+|++.+++...+..+   .   
T Consensus       185 ~l~i~D~--~g~~~~~---l-t~~~~~v~~p~wSpDg-----~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---~---  247 (433)
T PRK04922        185 ALQVADS--DGYNPQT---I-LRSAEPILSPAWSPDG-----KKLAYVSFERGRSAIYVQDLATGQRELVASF---R---  247 (433)
T ss_pred             EEEEECC--CCCCceE---e-ecCCCccccccCCCCC-----CEEEEEecCCCCcEEEEEECCCCCEEEeccC---C---
Confidence            4666444  4433332   2 4567789999999999     7777654    2 799999988763333222   2   


Q ss_pred             CCCCEEEEEEcCCCCCEEE-EEeCCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CCc--EEEEEC
Q 040307          122 FSSAITSFDWAGFDTRRVA-TCSVDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DCS--VRVFDL  194 (339)
Q Consensus       122 ~~~~i~~~~~~~~~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~--i~i~d~  194 (339)
                        .......|+| +++.|+ +.+.+|  .|++||+.+++. ..+..+.......+|+ +++.|+..+. ++.  |+++|+
T Consensus       248 --g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        248 --GINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             --CCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence              3345789998 887665 445555  599999988764 4455555556778999 7887776653 444  666677


Q ss_pred             CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307          195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC  272 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  272 (339)
                      .+++.......    ......++|+| +|++|+..+.++.  .|.+||+.. ++. ..+. +........|+|+|. +|+
T Consensus       324 ~~g~~~~lt~~----g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt-~~~~~~~p~~spdG~-~i~  394 (433)
T PRK04922        324 SGGSAERLTFQ----GNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST-GSV-RTLT-PGSLDESPSFAPNGS-MVL  394 (433)
T ss_pred             CCCCeEEeecC----CCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC-CCe-EECC-CCCCCCCceECCCCC-EEE
Confidence            66553322222    23345789998 8888877654432  489999875 332 3343 333456789999994 665


Q ss_pred             EEeC-CC--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC
Q 040307          273 SVAD-DS--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP  320 (339)
Q Consensus       273 ~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p  320 (339)
                      ..+. .+  .|.++++....             ...+..+.+.+...+|+|
T Consensus       395 ~~s~~~g~~~L~~~~~~g~~-------------~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        395 YATREGGRGVLAAVSTDGRV-------------RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEecCCceEEEEEECCCCc-------------eEEcccCCCCCCCCccCC
Confidence            5554 33  46666664433             233334456678888887

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=6.2e-14  Score=121.70  Aligned_cols=218  Identities=14%  Similarity=0.168  Sum_probs=143.7

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-   94 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-   94 (339)
                      ....+.+.+||||   |+.||+.+.. ..+..|.+|++.  +++...    .....+.+..+.|+||+     +.|+.. 
T Consensus       197 ~~~~~~~p~wSPD---G~~la~~s~~-~g~~~i~i~dl~--~G~~~~----l~~~~~~~~~~~~SPDG-----~~La~~~  261 (429)
T PRK03629        197 SPQPLMSPAWSPD---GSKLAYVTFE-SGRSALVIQTLA--NGAVRQ----VASFPRHNGAPAFSPDG-----SKLAFAL  261 (429)
T ss_pred             CCCceeeeEEcCC---CCEEEEEEec-CCCcEEEEEECC--CCCeEE----ccCCCCCcCCeEECCCC-----CEEEEEE
Confidence            4467899999999   9999987631 124567776654  333322    12334445678999999     666543 


Q ss_pred             C--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeccCC
Q 040307           95 G--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-T--TCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        95 ~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~  167 (339)
                      .  +  .|++||+++++  .. .+..+.     ..+....|+| +++.|+..+.+ +  .|+++|+.+++. ..+.....
T Consensus       262 ~~~g~~~I~~~d~~tg~--~~-~lt~~~-----~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~  331 (429)
T PRK03629        262 SKTGSLNLYVMDLASGQ--IR-QVTDGR-----SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS  331 (429)
T ss_pred             cCCCCcEEEEEECCCCC--EE-EccCCC-----CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC
Confidence            2  2  79999998875  32 232222     4567899998 89988777654 3  455557766643 33433444


Q ss_pred             ceeEEEec-CCcEEEEEeCC---CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEec
Q 040307          168 EVYDISWG-GFNVFASVSGD---CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDI  241 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~  241 (339)
                      ......|+ +++.|+..+.+   ..|.+||+.++.... +...    .......|+| +|+.|+..+.++.  .+.++++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC----CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence            55678899 78888776544   358889998776332 2221    1234678998 8998888887765  3566676


Q ss_pred             CCCCCceEEEecCCCCeeEEEeccC
Q 040307          242 RFPTNPVVVLSKHEGSVNGISWAPL  266 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~~v~~~~~~p~  266 (339)
                      .  +.....+..|.+.+...+|+|-
T Consensus       406 ~--G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        406 D--GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             C--CCCeEECccCCCCcCCcccCCC
Confidence            4  4456777788888999999984

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=1.1e-12  Score=110.88  Aligned_cols=266  Identities=13%  Similarity=0.106  Sum_probs=158.6

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCc-eEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTP-TNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT  108 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~  108 (339)
                      ++++++...   .+|.|.+  ++..+.+...  .+  .....+ ..+.|+||+     +++.+++ + .|.++|+.+.+ 
T Consensus         5 ~~l~~V~~~---~~~~v~v--iD~~t~~~~~--~i--~~~~~~h~~~~~s~Dg-----r~~yv~~rdg~vsviD~~~~~-   69 (369)
T PF02239_consen    5 GNLFYVVER---GSGSVAV--IDGATNKVVA--RI--PTGGAPHAGLKFSPDG-----RYLYVANRDGTVSVIDLATGK-   69 (369)
T ss_dssp             GGEEEEEEG---GGTEEEE--EETTT-SEEE--EE--E-STTEEEEEE-TT-S-----SEEEEEETTSEEEEEETTSSS-
T ss_pred             ccEEEEEec---CCCEEEE--EECCCCeEEE--EE--cCCCCceeEEEecCCC-----CEEEEEcCCCeEEEEECCccc-
Confidence            455554442   5899999  5555555554  33  322333 457899999     6555554 5 99999999998 


Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecc-------CCceeEEEec-CCc-
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLVAH-------DREVYDISWG-GFN-  178 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~-~~~-  178 (339)
                       .+.+++..      ....++++++ ++++++++. ..+.+.++|.++.+.++.+...       ...+..+..+ ... 
T Consensus        70 -~v~~i~~G------~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~  141 (369)
T PF02239_consen   70 -VVATIKVG------GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE  141 (369)
T ss_dssp             -EEEEEE-S------SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred             -EEEEEecC------CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence             67666654      3567899998 999888765 6899999999999988877532       2345666666 444 


Q ss_pred             EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-------------
Q 040307          179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-------------  245 (339)
Q Consensus       179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-------------  245 (339)
                      ++++.-..+.|.+.|....+........  .........|+| ++++++++......|.++|.....             
T Consensus       142 fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~  218 (369)
T PF02239_consen  142 FVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHP  218 (369)
T ss_dssp             EEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEE
T ss_pred             EEEEEccCCeEEEEEeccccccceeeec--ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccc
Confidence            4444444588888898877544332222  235678899998 888877765544448888876532             


Q ss_pred             -----------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEEE----eCCCcE
Q 040307          246 -----------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSV----ADDSRA  280 (339)
Q Consensus       246 -----------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~v  280 (339)
                                                               +.+.++...... .-+.-+|++ +++.+.    ...+.|
T Consensus       219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v  296 (369)
T PF02239_consen  219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTV  296 (369)
T ss_dssp             TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-E
T ss_pred             cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceE
Confidence                                                     111222222223 456778998 477776    455899


Q ss_pred             EEEEecCCCCCCCCCCCCCcccceeeec--ccceeEEEEecCCCCceEEEe-cCC-eEEEEe
Q 040307          281 LIWEVVGPGYRSGNGGPSGDVEPELCYQ--SMAEINVVRWSPLELDWIAIA-FVN-KLQLLK  338 (339)
Q Consensus       281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~-~d~-~v~~w~  338 (339)
                      .++|.++.+             ......  ....+..+.|+++|+++..+. .++ .|.+|+
T Consensus       297 ~viD~~tl~-------------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  297 QVIDKKTLK-------------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             EEEECCGTE-------------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             EEEECcCcc-------------eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            999999976             333322  233599999999999866443 333 798886

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3.7e-15  Score=122.11  Aligned_cols=257  Identities=14%  Similarity=0.152  Sum_probs=183.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCC-CCCEEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGF-DTRRVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~  143 (339)
                      ..|.+.|+.|.|+..+     .+|++|+|  .|.+||.....  ....+ .+|.     ..|....|-|. +..-|++++
T Consensus       139 ~~H~GcVntV~FN~~G-----d~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~-----~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRG-----DVLASGSDDLQVVVWDWVSGS--PKLSFESGHC-----NNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             cCCCCccceeeecccC-----ceeeccCccceEEeehhhccC--cccccccccc-----cchhhhhccCCCCCcCceecc
Confidence            5799999999999999     99999996  99999998876  33333 3555     67777778775 346799999


Q ss_pred             CCCeEEEEECCC-Cee--eeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC---CeEE
Q 040307          144 VDTTCVIWDIDR-EIL--ETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC---PLLR  215 (339)
Q Consensus       144 ~d~~v~i~d~~~-~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~  215 (339)
                      .||.|++=.+.. +..  ...+..|.++|.-++.-  ....|.+++.|+.+.-+|++.......+.....+..   ...+
T Consensus       207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~  286 (559)
T KOG1334|consen  207 RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT  286 (559)
T ss_pred             ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence            999999876533 322  33456799999999988  377899999999999999998875555544333333   5788


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-----eEEEec------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-----VVVLSK------HEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-----~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ++.+|.+...+++++.|.. +++||.+...+.     +.++..      ....|++++|+.++..+| +.-.|-.|+++.
T Consensus       287 Ia~~P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~  364 (559)
T KOG1334|consen  287 IAVDPRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDIYLFN  364 (559)
T ss_pred             EecCCCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee-eeecccceEEec
Confidence            9999988889999999999 999998863321     222221      234689999998875444 444577889985


Q ss_pred             ecCCCC-CCCCCCCCCcccceeeeccc--ceeEEEEe-cCCCCceEEEecCCeEEEEe
Q 040307          285 VVGPGY-RSGNGGPSGDVEPELCYQSM--AEINVVRW-SPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       285 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~-~p~~~~l~~~~~d~~v~~w~  338 (339)
                      -..... .|.-..+.....+....+|.  ..|..+-| -|...++++++.-|.|.||+
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence            444431 12211222222233345663  34777775 46777888888999999997

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=1.7e-14  Score=110.82  Aligned_cols=131  Identities=18%  Similarity=0.311  Sum_probs=92.6

Q ss_pred             CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE--eeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307          187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV--GMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA  264 (339)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  264 (339)
                      +...+|.++............ ..++|.+++|+| +++.+++.  ..+.. +.+||++  .+++..+.  ...++.+.|+
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP-~g~~favi~g~~~~~-v~lyd~~--~~~i~~~~--~~~~n~i~ws  109 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELK-KEGPIHDVAWSP-NGNEFAVIYGSMPAK-VTLYDVK--GKKIFSFG--TQPRNTISWS  109 (194)
T ss_pred             eeEEEEEEecCCCccceeecc-CCCceEEEEECc-CCCEEEEEEccCCcc-cEEEcCc--ccEeEeec--CCCceEEEEC
Confidence            345666665544333333321 235799999999 66665443  34555 9999996  45555554  5678899999


Q ss_pred             cCCCCeEEEEeC---CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe------cCCeEE
Q 040307          265 PLYGRRLCSVAD---DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA------FVNKLQ  335 (339)
Q Consensus       265 p~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~------~d~~v~  335 (339)
                      |+| ++|++++.   .|.|.+||.+..+             ++....|. .++.++|+|+|++++++.      .|+.++
T Consensus       110 P~G-~~l~~~g~~n~~G~l~~wd~~~~~-------------~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~  174 (194)
T PF08662_consen  110 PDG-RFLVLAGFGNLNGDLEFWDVRKKK-------------KISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFK  174 (194)
T ss_pred             CCC-CEEEEEEccCCCcEEEEEECCCCE-------------EeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEE
Confidence            999 58888774   4679999999766             44444444 478999999999988754      389999


Q ss_pred             EEeC
Q 040307          336 LLKV  339 (339)
Q Consensus       336 ~w~v  339 (339)
                      ||+.
T Consensus       175 Iw~~  178 (194)
T PF08662_consen  175 IWSF  178 (194)
T ss_pred             EEEe
Confidence            9974

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.66  E-value=2.2e-14  Score=110.49  Aligned_cols=252  Identities=14%  Similarity=0.085  Sum_probs=168.5

Q ss_pred             CCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCCCCCCCCeEEEe-
Q 040307           18 WPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSEETLNPDIVATS-   94 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~la~~-   94 (339)
                      ..+..+.|.-...++. .|+-+.    ..|.|.+|..+.........+.-...-. ....++.|++.+     .-++++ 
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~----a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~-----~~i~vs~  140 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAH----ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG-----TKIFVSD  140 (339)
T ss_pred             cccceeeeeeccCCccceeeecc----ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC-----ceEEEEc
Confidence            4567777775444455 556666    6899999877654433322111100111 124678899988     445544 


Q ss_pred             CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeee-eeccCCceeE
Q 040307           95 GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQ-LVAHDREVYD  171 (339)
Q Consensus        95 ~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~-~~~~~~~v~~  171 (339)
                      ++ .+.+-+......+..+..+.|.     -++....|+..+.+++.+|+.|+.+..||++..+ .+.. .+-|...|.+
T Consensus       141 s~G~~~~v~~t~~~le~vq~wk~He-----~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S  215 (339)
T KOG0280|consen  141 SRGSISGVYETEMVLEKVQTWKVHE-----FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS  215 (339)
T ss_pred             CCCcEEEEecceeeeeecccccccc-----eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence            44 6665555454444556788887     7888899987788999999999999999998433 3322 4568889999


Q ss_pred             EEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC---
Q 040307          172 ISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN---  246 (339)
Q Consensus       172 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~---  246 (339)
                      +.-+  .+.++++|+.|-.|++||.|+..++..-..   -.+.|..+.++|.....++.+..-++ .+|-++.....   
T Consensus       216 I~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~  291 (339)
T KOG0280|consen  216 IYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQ  291 (339)
T ss_pred             EecCCCCCceEEEeccccceeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchh
Confidence            9888  378999999999999999997664433222   24789999999965544445455555 78888765332   


Q ss_pred             -ceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEE-EEEecCC
Q 040307          247 -PVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRAL-IWEVVGP  288 (339)
Q Consensus       247 -~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~-iwd~~~~  288 (339)
                       .....+.|..-++.-.|.... .+|+|++ .|+.++ +|-.-+.
T Consensus       292 ~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  292 IVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccC
Confidence             233455677777778886554 4788877 576644 7754443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=8.5e-14  Score=120.97  Aligned_cols=205  Identities=9%  Similarity=0.057  Sum_probs=129.5

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---TTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      .|.++|.+...   ...+..+.     ..+.+.+|+| +++.|+..+.+   ..|.+||+.+++... +....+.+....
T Consensus       177 ~L~~~D~dG~~---~~~l~~~~-----~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~  246 (427)
T PRK02889        177 QLQISDADGQN---AQSALSSP-----EPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPA  246 (427)
T ss_pred             EEEEECCCCCC---ceEeccCC-----CCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceE
Confidence            67777765443   22333444     6788999999 99988877643   459999998886433 333445567889


Q ss_pred             ec-CCcEEE-EEeCCCcEEEEEC--CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEecCCCCCce
Q 040307          174 WG-GFNVFA-SVSGDCSVRVFDL--RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDIRFPTNPV  248 (339)
Q Consensus       174 ~~-~~~~l~-~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~~~~~~~~  248 (339)
                      |+ +++.|+ +.+.++...+|.+  ..+. ...+..   +........|+| +|+.|+..+.. +. ..+|.+.......
T Consensus       247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~---~~~~~~~~~wSp-DG~~l~f~s~~~g~-~~Iy~~~~~~g~~  320 (427)
T PRK02889        247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ---SSGIDTEPFFSP-DGRSIYFTSDRGGA-PQIYRMPASGGAA  320 (427)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC---CCCCCcCeEEcC-CCCEEEEEecCCCC-cEEEEEECCCCce
Confidence            99 677665 5677777666654  4433 222211   233456788998 88877766553 44 6666554322223


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEeCCC---cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVADDS---RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                      ..+..+.......+|+|+| ++|+..+.++   .|.+||+..+.             ...... ........|+|+++.+
T Consensus       321 ~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~-------------~~~lt~-~~~~~~p~~spdg~~l  385 (427)
T PRK02889        321 QRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ-------------VTALTD-TTRDESPSFAPNGRYI  385 (427)
T ss_pred             EEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC-------------eEEccC-CCCccCceECCCCCEE
Confidence            3333333445578999999 5777666544   59999988766             222222 2234678999999988


Q ss_pred             EEEecCC
Q 040307          326 IAIAFVN  332 (339)
Q Consensus       326 ~~~~~d~  332 (339)
                      +.++.++
T Consensus       386 ~~~~~~~  392 (427)
T PRK02889        386 LYATQQG  392 (427)
T ss_pred             EEEEecC
Confidence            7666433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4e-13  Score=112.24  Aligned_cols=284  Identities=14%  Similarity=0.180  Sum_probs=174.9

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE   83 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~   83 (339)
                      .+.+.... .++++.|||.   +.+|.+=-.      .....-.+.+|+...  .....  .+....+.. ++..|++|.
T Consensus        67 ~~lt~~~~-~~~~L~fSP~---g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s--~~q~k~Q~~-W~~qfs~dE  137 (566)
T KOG2315|consen   67 VVLCVELK-KTYDLLFSPK---GNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQRS--QIQKKMQNG-WVPQFSIDE  137 (566)
T ss_pred             EEEEeccc-eeeeeeeccc---ccccccccccccccCCCCCCCceeeeeecc--ceehh--heehhhhcC-cccccccch
Confidence            34444444 7889999999   888876321      111134567866554  22221  111223333 689999998


Q ss_pred             CCCCCCeEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEE-----EeCCCeEEEEECCCC
Q 040307           84 ETLNPDIVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVAT-----CSVDTTCVIWDIDRE  156 (339)
Q Consensus        84 ~~~~~~~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~d~~v~i~d~~~~  156 (339)
                           .+.|--. +.+++|+..+.+ .....+..       ..|+.+.++|. ....+|+     .+.-+.|+||.....
T Consensus       138 -----sl~arlv~nev~f~~~~~f~-~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  138 -----SLAARLVSNEVQFYDLGSFK-TIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             -----hhhhhhhcceEEEEecCCcc-ceeeeeec-------cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence                 5555443 499999998754 23334433       67999999984 2334443     455678999987632


Q ss_pred             eeeeee---eccCCceeEEEec-CC-cEEEEEe--CC---------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307          157 ILETQL---VAHDREVYDISWG-GF-NVFASVS--GD---------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       157 ~~~~~~---~~~~~~v~~~~~~-~~-~~l~~~~--~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p  220 (339)
                      ..-..+   .-....-..+.|+ -+ .+|+.++  -|         .++++.++........+.    ..++|.++.|+|
T Consensus       205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPVhdv~W~~  280 (566)
T KOG2315|consen  205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL----KEGPVHDVTWSP  280 (566)
T ss_pred             cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----CCCCceEEEECC
Confidence            211111   0111222356677 22 2333322  22         468888887433322222    358999999999


Q ss_pred             CCCC-eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC---CCcEEEEEecCCCCCCCCCC
Q 040307          221 ADPR-FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD---DSRALIWEVVGPGYRSGNGG  296 (339)
Q Consensus       221 ~~~~-~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~  296 (339)
                       +++ +-++-+.--..+.|||++  +.++..+.  .++=+++-|+|.| ++|+.++-   .|.+-|||+.+.+       
T Consensus       281 -s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K-------  347 (566)
T KOG2315|consen  281 -SGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK-------  347 (566)
T ss_pred             -CCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh-------
Confidence             554 444444444449999998  45665554  6778899999999 57777664   4899999999966       


Q ss_pred             CCCcccceeeecccceeEEEEecCCCCceEEEe-c-----CCeEEEEeC
Q 040307          297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-F-----VNKLQLLKV  339 (339)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~-----d~~v~~w~v  339 (339)
                            .+... ....-+-+.|+|||++++++. .     |+.++||+.
T Consensus       348 ------~i~~~-~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  348 ------LIAKF-KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             ------hcccc-ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence                  23222 223456789999999988654 2     899999974

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.3e-11  Score=98.46  Aligned_cols=283  Identities=14%  Similarity=0.120  Sum_probs=185.8

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---C--cEEEEeecC--
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---D--SLRLWEIHD--  105 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---~--~i~iw~~~~--  105 (339)
                      ..+.+|++....+..|++|+++...++...  .........++-|+|+|+.     +.|-++.   +  .|.-|.++.  
T Consensus         3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~--~~~v~~~~nptyl~~~~~~-----~~LY~v~~~~~~ggvaay~iD~~~   75 (346)
T COG2706           3 QTVYIGTYTKRESQGIYVFNLDTKTGELSL--LQLVAELGNPTYLAVNPDQ-----RHLYVVNEPGEEGGVAAYRIDPDD   75 (346)
T ss_pred             eEEEEeeecccCCCceEEEEEeCcccccch--hhhccccCCCceEEECCCC-----CEEEEEEecCCcCcEEEEEEcCCC
Confidence            356667764445789999999977766655  2234677889999999999     6666653   2  677777765  


Q ss_pred             CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCC-Ceeee--eeeccCCc----------eeE
Q 040307          106 DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDR-EILET--QLVAHDRE----------VYD  171 (339)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~-~~~~~--~~~~~~~~----------v~~  171 (339)
                      ++...+.......     .+-+.+++++ ++++++++.. .|.|.++-++. |....  ....|.+.          +..
T Consensus        76 G~Lt~ln~~~~~g-----~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          76 GRLTFLNRQTLPG-----SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             CeEEEeeccccCC-----CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence            4433332222211     3447899997 8888888765 57899999865 33211  12234444          777


Q ss_pred             EEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          172 ISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      ..+. ++++|++... --.|.+|++..++........-......+.|.|+| ++++..+.++=.++|.+|........+.
T Consensus       150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            7888 5778777753 24699999997763322111112346678999999 8888877666555599999887433344


Q ss_pred             EEecC---------CCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEe
Q 040307          250 VLSKH---------EGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRW  318 (339)
Q Consensus       250 ~~~~~---------~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~  318 (339)
                      .++.+         ......|..+|+| ++|.++. ....|.+|.+....         +.+...... .+......+.+
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~---------g~L~~~~~~~teg~~PR~F~i  298 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDG---------GKLELVGITPTEGQFPRDFNI  298 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCC---------CEEEEEEEeccCCcCCcccee
Confidence            44332         3467789999999 4766655 44589999988765         011122222 23444789999


Q ss_pred             cCCCCceEEEec-CCeEEEEeC
Q 040307          319 SPLELDWIAIAF-VNKLQLLKV  339 (339)
Q Consensus       319 ~p~~~~l~~~~~-d~~v~~w~v  339 (339)
                      +|++++|+++.. +..|.+|.+
T Consensus       299 ~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         299 NPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             CCCCCEEEEEccCCCcEEEEEE
Confidence            999999888874 455887753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=4.1e-13  Score=117.24  Aligned_cols=202  Identities=10%  Similarity=0.097  Sum_probs=134.0

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      .|.++|.+...   ...+..+.     ..+...+|+| +++.|+..+.   +..|++||+.+++. ..+..+.+.+...+
T Consensus       183 ~l~~~d~dg~~---~~~lt~~~-----~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~  252 (435)
T PRK05137        183 RLAIMDQDGAN---VRYLTDGS-----SLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPR  252 (435)
T ss_pred             EEEEECCCCCC---cEEEecCC-----CCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcE
Confidence            78888876553   33444554     6899999999 8998888764   46899999988764 34445666778899


Q ss_pred             ec-CCcEEE-EEeCCCc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CC-eEEEEecCCCCCc
Q 040307          174 WG-GFNVFA-SVSGDCS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SN-KVVVLDIRFPTNP  247 (339)
Q Consensus       174 ~~-~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~-~i~i~d~~~~~~~  247 (339)
                      |+ +++.|+ +.+.++.  |++||+.++.... +..   +........|+| +++.|+..+.. +. +|+++|+.. + .
T Consensus       253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~---~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-~-~  325 (435)
T PRK05137        253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTD---SPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-S-N  325 (435)
T ss_pred             ECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccC---CCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-C-C
Confidence            99 677664 5555555  7777888765322 221   234556789998 78877776643 32 477888754 2 3


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEeCC-C--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVADD-S--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      ...+..+...+....|+|+|. .|+..+.+ +  .|.+||+....             .. .......+....|+|+|+.
T Consensus       326 ~~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~-------------~~-~lt~~~~~~~p~~spDG~~  390 (435)
T PRK05137        326 PRRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG-------------ER-ILTSGFLVEGPTWAPNGRV  390 (435)
T ss_pred             eEEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc-------------eE-eccCCCCCCCCeECCCCCE
Confidence            445554455677889999994 77665533 3  57777765443             11 1122234678999999998


Q ss_pred             eEEEec
Q 040307          325 WIAIAF  330 (339)
Q Consensus       325 l~~~~~  330 (339)
                      ++..+.
T Consensus       391 i~~~~~  396 (435)
T PRK05137        391 IMFFRQ  396 (435)
T ss_pred             EEEEEc
Confidence            765443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2e-13  Score=118.99  Aligned_cols=217  Identities=16%  Similarity=0.135  Sum_probs=139.8

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-Ee
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA-TS   94 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la-~~   94 (339)
                      +...+.+.+|+|+   ++.|++.+.. .....|.+|+++  ++....   + ....+...+++|+|++     +.|+ +.
T Consensus       202 ~~~~v~~p~wSpD---g~~la~~s~~-~~~~~l~~~dl~--~g~~~~---l-~~~~g~~~~~~~SpDG-----~~l~~~~  266 (433)
T PRK04922        202 SAEPILSPAWSPD---GKKLAYVSFE-RGRSAIYVQDLA--TGQREL---V-ASFRGINGAPSFSPDG-----RRLALTL  266 (433)
T ss_pred             CCCccccccCCCC---CCEEEEEecC-CCCcEEEEEECC--CCCEEE---e-ccCCCCccCceECCCC-----CEEEEEE
Confidence            4567889999999   9999988731 123457776654  333322   1 2334455688999999     5544 43


Q ss_pred             C--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCe--EEEEECCCCeeeeeeeccCC
Q 040307           95 G--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTT--CVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        95 ~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~--v~i~d~~~~~~~~~~~~~~~  167 (339)
                      +  +  .|++|++.+++.   ..+..+.     ......+|+| +++.|+.++. +|.  |+++|+.+++.. .+..+..
T Consensus       267 s~~g~~~Iy~~d~~~g~~---~~lt~~~-----~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~  336 (433)
T PRK04922        267 SRDGNPEIYVMDLGSRQL---TRLTNHF-----GIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN  336 (433)
T ss_pred             eCCCCceEEEEECCCCCe---EECccCC-----CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC
Confidence            2  2  799999988752   2333333     3446789998 8888887664 444  777777666533 2322333


Q ss_pred             ceeEEEec-CCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEec
Q 040307          168 EVYDISWG-GFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDI  241 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~  241 (339)
                      .....+|+ +++.|+..+.++   .|.+||+.+++.. .+...    .......|+| +++.++..+.++.  .|.++++
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~----~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG----SLDESPSFAP-NGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC----CCCCCceECC-CCCEEEEEEecCCceEEEEEEC
Confidence            45578999 788887765443   5999999877633 22221    2344678998 8887777665432  3777777


Q ss_pred             CCCCCceEEEecCCCCeeEEEecc
Q 040307          242 RFPTNPVVVLSKHEGSVNGISWAP  265 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~~v~~~~~~p  265 (339)
                      .  +.....+..+.+.+...+|+|
T Consensus       411 ~--g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        411 D--GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             C--CCceEEcccCCCCCCCCccCC
Confidence            4  344566666667788888887

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=1.7e-13  Score=105.30  Aligned_cols=153  Identities=14%  Similarity=0.343  Sum_probs=110.9

Q ss_pred             eEEEeeecCCcccEEEEeeec------cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           21 STVAWSVRHDRKSRLAVGSFL------EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        21 ~~i~~sp~~~~~~~la~g~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      ..+.|+|.   |++|++-...      ...-+...||.++..+....   .+.....++|.+++|+|++     +.+|..
T Consensus         9 ~~~~W~~~---G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~---~i~l~~~~~I~~~~WsP~g-----~~favi   77 (194)
T PF08662_consen    9 AKLHWQPS---GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE---SIELKKEGPIHDVAWSPNG-----NEFAVI   77 (194)
T ss_pred             EEEEeccc---CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc---eeeccCCCceEEEEECcCC-----CEEEEE
Confidence            46889999   9888776520      01124567777765544433   2234556679999999999     555443


Q ss_pred             -C--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeccCC
Q 040307           95 -G--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        95 -~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~  167 (339)
                       +  + .|.+||++. +  .+..+..       ..++.+.|+| +|++|++++.   .|.|.+||.++.+.+.... |. 
T Consensus        78 ~g~~~~~v~lyd~~~-~--~i~~~~~-------~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-  144 (194)
T PF08662_consen   78 YGSMPAKVTLYDVKG-K--KIFSFGT-------QPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-  144 (194)
T ss_pred             EccCCcccEEEcCcc-c--EeEeecC-------CCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-
Confidence             3  3 899999973 2  5556643       5788999999 9999999874   4679999999888877764 43 


Q ss_pred             ceeEEEec-CCcEEEEEeC------CCcEEEEECCCC
Q 040307          168 EVYDISWG-GFNVFASVSG------DCSVRVFDLRDK  197 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~------d~~i~i~d~~~~  197 (339)
                      .++.++|+ +|++|+++..      |..++||+....
T Consensus       145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            47899999 7999998874      788899998654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.9e-13  Score=114.49  Aligned_cols=237  Identities=14%  Similarity=0.111  Sum_probs=162.7

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      .+.++...+.+..+|||.    .++|+|. . .|++||+.+-.    ..+..|...   ..|.-.-.+ .|-..++.--.
T Consensus        47 dfe~p~ast~ik~s~DGq----Y~lAtG~YKP~ikvydlanLS----LKFERhlDa---e~V~feiLs-DD~SK~v~L~~  114 (703)
T KOG2321|consen   47 DFEMPTASTRIKVSPDGQ----YLLATGTYKPQIKVYDLANLS----LKFERHLDA---EVVDFEILS-DDYSKSVFLQN  114 (703)
T ss_pred             hcCCccccceeEecCCCc----EEEEecccCCceEEEEcccce----eeeeecccc---cceeEEEec-cchhhheEeec
Confidence            457888999999999993    3444554 3 99999998754    233333310   233333333 35555555566


Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      |.+|-+... -|... .+. -...-.+++++ +..-|..++....|+-+++..+..+..+..   ..+.++++..++ ..
T Consensus       115 DR~IefHak-~G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~-~h  187 (703)
T KOG2321|consen  115 DRTIEFHAK-YGRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINE-EH  187 (703)
T ss_pred             Cceeeehhh-cCeee-eee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeecC-cc
Confidence            777776543 22211 111 12234678888 544455555566788899999885555433   246899999997 77


Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEe------cCCC-----CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLS------KHEG-----SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS  292 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~------~~~~-----~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~  292 (339)
                      .+|++|+.+|. |.+||.+. ...+..+.      .|.+     .|+++.|+-+| ..+++|+.+|.+.|||++...   
T Consensus       188 gLla~Gt~~g~-VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~---  261 (703)
T KOG2321|consen  188 GLLACGTEDGV-VEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASK---  261 (703)
T ss_pred             ceEEecccCce-EEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCC---
Confidence            89999999999 99999987 33333332      2322     49999999998 799999999999999999988   


Q ss_pred             CCCCCCCcccceeeecc--cceeEEEEecCCCCc-eEEEecCCeEEEEe
Q 040307          293 GNGGPSGDVEPELCYQS--MAEINVVRWSPLELD-WIAIAFVNKLQLLK  338 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~-l~~~~~d~~v~~w~  338 (339)
                                |+....|  ..+|..+.|.+.+.. -+.+.....++||+
T Consensus       262 ----------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd  300 (703)
T KOG2321|consen  262 ----------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWD  300 (703)
T ss_pred             ----------ceeecccCCccceeeecccccCCCceEEecchHHhhhcc
Confidence                      8877776  457999999887433 44555666788886

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.58  E-value=3.3e-14  Score=122.33  Aligned_cols=258  Identities=19%  Similarity=0.292  Sum_probs=182.1

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      .......+..|..+.|+|.......++.-+     ...-.+|++.........  -+..+|..+|+.+.|.|+..    .
T Consensus        60 r~l~h~tpw~vad~qws~h~a~~~wiVsts-----~qkaiiwnlA~ss~~aIe--f~lhghsraitd~n~~~q~p----d  128 (1081)
T KOG0309|consen   60 RWLHHITPWQVADVQWSPHPAKPYWIVSTS-----NQKAIIWNLAKSSSNAIE--FVLHGHSRAITDINFNPQHP----D  128 (1081)
T ss_pred             eeeeccCcchhcceecccCCCCceeEEecC-----cchhhhhhhhcCCccceE--EEEecCccceeccccCCCCC----c
Confidence            344445678899999999865444454444     778889888755443332  23479999999999999884    8


Q ss_pred             eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccC
Q 040307           90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHD  166 (339)
Q Consensus        90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~  166 (339)
                      ++|+++ + .+..||+..... ++..+....     .....+.|+-.+++.+| .+....|.+||++.+. ++..+++|.
T Consensus       129 Vlatcsvdt~vh~wd~rSp~~-p~ys~~~w~-----s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~v  201 (1081)
T KOG0309|consen  129 VLATCSVDTYVHAWDMRSPHR-PFYSTSSWR-----SAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHV  201 (1081)
T ss_pred             ceeeccccccceeeeccCCCc-ceeeeeccc-----ccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccc
Confidence            999998 6 999999998763 444444333     56778999975555555 4667899999998765 777888899


Q ss_pred             CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeE--------
Q 040307          167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKV--------  236 (339)
Q Consensus       167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i--------  236 (339)
                      ..|+.++|+  -...+++++.|++|+.||.............  ...++..-.+-|....+.+--...+..+        
T Consensus       202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~  279 (1081)
T KOG0309|consen  202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS  279 (1081)
T ss_pred             eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc--ccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence            999999998  4667899999999999998866432222221  2356666666663322222222211113        


Q ss_pred             -EEEecCCCCCceEEEecCCCCeeEEEeccCC---------CCeEEEEeCCCcEEEEEecC
Q 040307          237 -VVLDIRFPTNPVVVLSKHEGSVNGISWAPLY---------GRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       237 -~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~v~iwd~~~  287 (339)
                       ..|+......++..+.+|...|....|-..+         +..|+|-+.|..+++|-+..
T Consensus       280 d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  280 DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence             3455555567899999999998887775443         25799999999999998865

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.58  E-value=8.3e-13  Score=104.06  Aligned_cols=246  Identities=11%  Similarity=0.148  Sum_probs=175.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +.+.+++...-|.   ..-+.+.+    .|.+++||. +.+.++.-.  .+...-+.++.++.+.++.     ..|.+|-
T Consensus        23 ~~d~vn~~~l~~~---e~gv~~~s----~drtvrv~l-krds~q~wp--sI~~~mP~~~~~~~y~~e~-----~~L~vg~   87 (404)
T KOG1409|consen   23 SQDDVNAAILIPK---EEGVISVS----EDRTVRVWL-KRDSGQYWP--SIYHYMPSPCSAMEYVSES-----RRLYVGQ   87 (404)
T ss_pred             chhhhhhheeccC---CCCeEEcc----ccceeeeEE-eccccccCc--hhhhhCCCCceEeeeeccc-----eEEEEEE
Confidence            4577888888888   77788888    799999984 444444433  2223456789999999998     7888886


Q ss_pred             C--cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           96 D--SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        96 ~--~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      +  ++.-+.+...  +....+....|.     ..+..+-|+- ....+++.+.|..+.-.-.+.+..+..+. .....++
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~-----~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~  160 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQ-----ARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASA  160 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhh-----cceeeEEecC-CceeEEEeccccceEEEeeccCCcccceE-eeccCCC
Confidence            5  6666655442  122344445566     8899999985 78899999998877654445554333332 1122223


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      +.+. .  +...|...|.|.+-.+..... ..+.....|...+.+++|.| ...+|++|..|.. +.+||+.........
T Consensus       161 ~~~d~~--~~fvGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~-vi~wdigg~~g~~~e  235 (404)
T KOG1409|consen  161 LQFDAL--YAFVGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHS-VIMWDIGGRKGTAYE  235 (404)
T ss_pred             CceeeE--EEEecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcC-CCcEEEeccccCc-eEEEeccCCcceeee
Confidence            3333 2  555666677777766655442 22333345889999999998 8889999999998 999999876666788


Q ss_pred             EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +.+|...|..+..-+.- +.+.+++.||.|.+|+++...
T Consensus       236 l~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  236 LQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence            89999999999988887 699999999999999987654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.57  E-value=8.4e-14  Score=109.59  Aligned_cols=217  Identities=14%  Similarity=0.182  Sum_probs=150.5

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc-------------------------------cc
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF-------------------------------SA   62 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~-------------------------------~~   62 (339)
                      .+....|..+.|.++.+...+|+++.     |.+|++|.+.....+.                               .+
T Consensus        81 leieEKinkIrw~~~~n~a~FLlstN-----dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p  155 (433)
T KOG1354|consen   81 LEIEEKINKIRWLDDGNLAEFLLSTN-----DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP  155 (433)
T ss_pred             hhhhhhhhhceecCCCCccEEEEecC-----CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence            34456899999999855444555555     9999999876543332                               00


Q ss_pred             eeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307           63 DNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA  140 (339)
Q Consensus        63 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  140 (339)
                      ...+...|+--|+++.++.|.     ..+.++.| .|-+|+++-.. .-.+..++.+.-++...-|++..|+|...+.|+
T Consensus       156 rRv~aNaHtyhiNSIS~NsD~-----Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~  230 (433)
T KOG1354|consen  156 RRVYANAHTYHINSISVNSDK-----ETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV  230 (433)
T ss_pred             eeeccccceeEeeeeeecCcc-----ceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE
Confidence            112223577889999999999     89999999 99999987543 112334444444444467899999998889999


Q ss_pred             EEeCCCeEEEEECCCCee----eee------------eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE
Q 040307          141 TCSVDTTCVIWDIDREIL----ETQ------------LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII  203 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~~~----~~~------------~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  203 (339)
                      .++..|+|++.|++....    .+.            +.+--..|.++.|+ .|+++++-.. -+|++||+.....+...
T Consensus       231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t  309 (433)
T KOG1354|consen  231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVET  309 (433)
T ss_pred             EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceE
Confidence            999999999999985321    001            11123468899999 7888887543 58999999766555554


Q ss_pred             EeCCC----------CCC---CeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          204 YENPV----------QDC---PLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       204 ~~~~~----------~~~---~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      +....          ...   .-..++|+- ++.++++|+..+. .++|+...
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~-frvf~~~~  360 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNV-FRVFNLAR  360 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccce-EEEecCCC
Confidence            43311          011   123578885 7889999999998 99999654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.57  E-value=1.3e-10  Score=98.37  Aligned_cols=264  Identities=16%  Similarity=0.121  Sum_probs=166.4

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .........++++|+   +++|.+.......++.|..|.++.+++.+...... .........++++|++     ++|++
T Consensus        33 ~~~~~~Ps~l~~~~~---~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~g-----~~l~v  103 (345)
T PF10282_consen   33 VAEGENPSWLAVSPD---GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPDG-----RFLYV  103 (345)
T ss_dssp             EEESSSECCEEE-TT---SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTTS-----SEEEE
T ss_pred             ecCCCCCceEEEEeC---CCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecCC-----CEEEE
Confidence            334567788999999   88888887211136899999998876666553333 2244566789999999     77776


Q ss_pred             eC--C-cEEEEeecCC-cceeEEEeecC------CCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCe--e--
Q 040307           94 SG--D-SLRLWEIHDD-RTELKSLLNSN------KTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREI--L--  158 (339)
Q Consensus        94 ~~--~-~i~iw~~~~~-~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~--~--  158 (339)
                      +.  + .|.+++++.. ..........+      ..........++.++| +++++++... ...|.+|++....  .  
T Consensus       104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~  182 (345)
T PF10282_consen  104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTP  182 (345)
T ss_dssp             EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred             EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence            63  3 9999999874 32122111111      0011125677899998 8887777643 4589999987654  2  


Q ss_pred             eeeee-ccCCceeEEEec-CCcEEE-EEeCCCcEEEEECCCCc-ceee---EEeC---CCCCCCeEEEEEecCCCCeEEE
Q 040307          159 ETQLV-AHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLRDKE-RSTI---IYEN---PVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       159 ~~~~~-~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~~~~-~~~~---~~~~---~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      ...+. ......+.+.|+ +++++. +.-.++.|.++++.... ....   +...   .........++++| ++++|++
T Consensus       183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyv  261 (345)
T PF10282_consen  183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYV  261 (345)
T ss_dssp             EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEE
T ss_pred             eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEE
Confidence            11221 234567899999 666554 44567889999988222 1111   1111   11123678899998 8999988


Q ss_pred             EeeCCCeEEEEecCCCCCce---EEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCC
Q 040307          229 VGMDSNKVVVLDIRFPTNPV---VVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPG  289 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~  289 (339)
                      +......|.+|++......+   ..+.......+.++++|+|. +|+++. .++.|.+|++....
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR-YLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS-EEEEEETTTTEEEEEEEETTT
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC-EEEEEecCCCeEEEEEEeCCC
Confidence            88777679999995322223   33333345589999999995 666655 67899999987544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.2e-11  Score=107.05  Aligned_cols=237  Identities=12%  Similarity=0.084  Sum_probs=140.9

Q ss_pred             EEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe-E-EEeC--C--cEEEEeecCCcceeEEEeecCCCccC
Q 040307           49 ELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI-V-ATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEF  122 (339)
Q Consensus        49 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-l-a~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~  122 (339)
                      .||-.+.++.....   + ......+..-.|+||++    .+ + .+..  +  .|.+.++.+++...+..+.+      
T Consensus       166 ~l~~~d~dG~~~~~---l-t~~~~~~~sP~wSPDG~----~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g------  231 (428)
T PRK01029        166 ELWSVDYDGQNLRP---L-TQEHSLSITPTWMHIGS----GFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG------  231 (428)
T ss_pred             eEEEEcCCCCCceE---c-ccCCCCcccceEccCCC----ceEEEEEEccCCCceEEEEECCCCCceEeecCCC------
Confidence            44446665555443   1 33445567889999993    22 2 2332  2  78888998886444444433      


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeC-CC----eEEEEECCCC---eeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEE
Q 040307          123 SSAITSFDWAGFDTRRVATCSV-DT----TCVIWDIDRE---ILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVF  192 (339)
Q Consensus       123 ~~~i~~~~~~~~~~~~l~~~~~-d~----~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~  192 (339)
                        .....+|+| |++.|+..+. +|    .+.+|++..+   +...............+|+ +++.|+..+ .++...+|
T Consensus       232 --~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        232 --NQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             --CccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence              344679999 9988887653 22    3444776653   2222222222344678999 778777655 46655555


Q ss_pred             --ECCCC-cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307          193 --DLRDK-ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY  267 (339)
Q Consensus       193 --d~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~  267 (339)
                        ++... .....+ ..  ....+....|+| +|+.|+..+.++  ..|.+||+.. ++ ...+......+....|+|+|
T Consensus       309 ~~~~~~~g~~~~~l-t~--~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG  382 (428)
T PRK01029        309 IMQIDPEGQSPRLL-TK--KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDS  382 (428)
T ss_pred             EEECcccccceEEe-cc--CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC-CC-eEEccCCCCCccceEECCCC
Confidence              44322 212222 11  234567889999 788777665442  2499999876 33 34444334467789999999


Q ss_pred             CCeEE-EEeCC--CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307          268 GRRLC-SVADD--SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       268 ~~~l~-~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~  322 (339)
                      . .|+ ++..+  ..|.++|+...+             ...+....+.+...+|+|-.
T Consensus       383 ~-~L~f~~~~~g~~~L~~vdl~~g~-------------~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        383 L-HLVYSAGNSNESELYLISLITKK-------------TRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             C-EEEEEECCCCCceEEEEECCCCC-------------EEEeecCCCcccCceecCCC
Confidence            5 555 44433  467777877665             33333445567788998854

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=4.8e-12  Score=105.87  Aligned_cols=292  Identities=12%  Similarity=0.163  Sum_probs=180.1

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeee-------ccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSF-------LEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFP   81 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~-------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~   81 (339)
                      .+.+|.|+ .|.-+.|||.   .+||++=+.       ..+....+.|||+...  ........ ...+.. -.-..||.
T Consensus       243 r~~RF~Hp-~Vq~idfSP~---EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG--~lkrsF~~-~~~~~~~WP~frWS~  315 (698)
T KOG2314|consen  243 RIQRFYHP-GVQFIDFSPN---EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG--LLKRSFPV-IKSPYLKWPIFRWSH  315 (698)
T ss_pred             HHHhccCC-CceeeecCCc---cceEEEecCCccccCcccCCCceEEEEEcccc--chhcceec-cCCCccccceEEecc
Confidence            34455554 5778999999   999998665       1223468999776543  33320011 111222 23568999


Q ss_pred             CCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----CCeEEEEECCC
Q 040307           82 SEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----DTTCVIWDIDR  155 (339)
Q Consensus        82 ~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~  155 (339)
                      |+     +++|.-.. .|.||+...-...-...++-       ..|....|+| .+++||.=..     -..+.+-.+.+
T Consensus       316 Dd-----Ky~Arm~~~sisIyEtpsf~lld~Kslki-------~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs  382 (698)
T KOG2314|consen  316 DD-----KYFARMTGNSISIYETPSFMLLDKKSLKI-------SGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPS  382 (698)
T ss_pred             CC-----ceeEEeccceEEEEecCceeeecccccCC-------ccccCcccCC-CcceEEEEcccccCCcceEEEEecCc
Confidence            99     89998775 99999977643111222222       6788999999 7777775332     23455666666


Q ss_pred             CeeeeeeeccCCceeEEEec-CCcEEEEE----------eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          156 EILETQLVAHDREVYDISWG-GFNVFASV----------SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      ++.+++-.-+.-.=..+-|- .|++|+.-          +.-..+.|+.++....+......   ...|...+|-| .|+
T Consensus       383 ~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP-~gd  458 (698)
T KOG2314|consen  383 KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEP-HGD  458 (698)
T ss_pred             cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeecc-CCC
Confidence            66555544333221223344 56666532          22345778888888877666655   46889999999 555


Q ss_pred             eEEE--EeeCCCeEEEEecCC-CCCceEEEecCCCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCCCCCCCCCCC
Q 040307          225 FMAT--VGMDSNKVVVLDIRF-PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPGYRSGNGGPS  298 (339)
Q Consensus       225 ~l~~--~~~d~~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~  298 (339)
                      .+++  |......+.+|-+.. ..++.....-.....+.+.|+|.| ++++.+.   ..|.+.++|+....         
T Consensus       459 kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~---------  528 (698)
T KOG2314|consen  459 KFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD---------  528 (698)
T ss_pred             eEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchhh---------
Confidence            5444  333333488998873 222221112223567899999999 5777654   57899999998643         


Q ss_pred             CcccceeeecccceeEEEEecCCCCceEEEec------CCeEEEEe
Q 040307          299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAF------VNKLQLLK  338 (339)
Q Consensus       299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~------d~~v~~w~  338 (339)
                        ........| ...+.+.|.|.|+|+++++.      |..-++|.
T Consensus       529 --~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~t  571 (698)
T KOG2314|consen  529 --LKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFT  571 (698)
T ss_pred             --hhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEE
Confidence              111222223 35788999999999988764      55555554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.56  E-value=3.5e-13  Score=112.05  Aligned_cols=210  Identities=14%  Similarity=0.109  Sum_probs=138.7

Q ss_pred             CeEEEe-CCcEEEEeecCCc--ceeE--EEeecCCCccCCCCEEEEEEcC----CCCCEEEEEeCCCeEEEEECCCCeee
Q 040307           89 DIVATS-GDSLRLWEIHDDR--TELK--SLLNSNKTSEFSSAITSFDWAG----FDTRRVATCSVDTTCVIWDIDREILE  159 (339)
Q Consensus        89 ~~la~~-~~~i~iw~~~~~~--~~~~--~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~d~~v~i~d~~~~~~~  159 (339)
                      +.|+-. ++.+++|+.....  ..++  ..+.+       ...++-+|+.    ..+--++.|-.-|.|.+.|....+..
T Consensus       136 d~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g-------t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~s  208 (636)
T KOG2394|consen  136 DRLCFNVGRELYVYSYRGAADLSKPIDKREYKG-------TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVS  208 (636)
T ss_pred             CEEEEecCCeEEEEEccCcchhccchhhhcccC-------CCCceecccccccCCCCcceEEeeccCceEEecchhhHHH
Confidence            455544 4589999987432  1111  12222       2233444421    15667888888899999987664322


Q ss_pred             eeee----ccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          160 TQLV----AHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       160 ~~~~----~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      +.+.    -.+..|+|+.|-  +...|+.+-.+|.+++||..-..       .   .......+ .+ ++..++...   
T Consensus       209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~---~t~p~~~~-~k-~~~~f~i~t---  273 (636)
T KOG2394|consen  209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------G---ATAPSYQA-LK-DGDQFAILT---  273 (636)
T ss_pred             HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------c---CCCCcccc-cC-CCCeeEEee---
Confidence            2221    123679999998  57788888999999999972111       1   01111111 12 455554332   


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccce
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAE  312 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  312 (339)
                           |--.....|+.....-.+.|+.++|+||| ++||+.+.||.++|||+...+             .+ ....--+.
T Consensus       274 -----~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~e-------------Llg~mkSYFGG  334 (636)
T KOG2394|consen  274 -----SKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQE-------------LLGVMKSYFGG  334 (636)
T ss_pred             -----eeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHH-------------HHHHHHhhccc
Confidence                 22222235677666667799999999999 699999999999999999977             33 22233567


Q ss_pred             eEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          313 INVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       313 i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..+++|||||+++++++.|.-|.||.+
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEe
Confidence            899999999999999999999999974

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=7.9e-12  Score=109.10  Aligned_cols=218  Identities=17%  Similarity=0.145  Sum_probs=132.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC---C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE-
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG---D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT-  141 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-  141 (339)
                      ..+...+.+..|+||+     +.|+..+   +  .|.+||+.+++...+..+.        .......|+| +++.|+. 
T Consensus       214 ~~~~~~~~~p~wSPDG-----~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--------g~~~~~~wSP-DG~~La~~  279 (448)
T PRK04792        214 LRSPEPLMSPAWSPDG-----RKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--------GINGAPRFSP-DGKKLALV  279 (448)
T ss_pred             ecCCCcccCceECCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEecCCC--------CCcCCeeECC-CCCEEEEE
Confidence            4567788999999999     6666543   2  7889999887633333232        2334679998 8887765 


Q ss_pred             EeCCCe--EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307          142 CSVDTT--CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDLRDKERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       142 ~~~d~~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~  215 (339)
                      .+.++.  |+++|+.+++. ..+..+.......+|+ +++.|+..+. ++  .|.++|+.+++........    .....
T Consensus       280 ~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g----~~~~~  354 (448)
T PRK04792        280 LSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG----EQNLG  354 (448)
T ss_pred             EeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC----CCCcC
Confidence            455664  77888887764 3444455566788999 6777765543 33  4666777766633332222    22345


Q ss_pred             EEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc--EEEEEecCCCCC
Q 040307          216 LEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR--ALIWEVVGPGYR  291 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--v~iwd~~~~~~~  291 (339)
                      .+|+| +|++|+..+.++.  .|.++|+.. +. ...+... .......|+|+|..++++...++.  +.+++.+...  
T Consensus       355 ~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~--  428 (448)
T PRK04792        355 GSITP-DGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF--  428 (448)
T ss_pred             eeECC-CCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc--
Confidence            78998 7787777665433  355667665 22 2333322 223356899999534444444554  5555654332  


Q ss_pred             CCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          292 SGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                                 ......+.+.+...+|+|-
T Consensus       429 -----------~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        429 -----------KARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             -----------eEECcCCCCCcCCCccCCC
Confidence                       2333344556788889873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.1e-11  Score=106.73  Aligned_cols=232  Identities=14%  Similarity=0.149  Sum_probs=141.4

Q ss_pred             EEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCC
Q 040307           49 ELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFS  123 (339)
Q Consensus        49 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~  123 (339)
                      +||-++.++.....    ...+...+....|+|++     +.|+..+    . .|.+|++.+++.+.+....        
T Consensus       180 ~l~~~d~~g~~~~~----l~~~~~~~~~p~wSpDG-----~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--------  242 (430)
T PRK00178        180 TLQRSDYDGARAVT----LLQSREPILSPRWSPDG-----KRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--------  242 (430)
T ss_pred             EEEEECCCCCCceE----EecCCCceeeeeECCCC-----CEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--------
Confidence            44445555544332    24667788999999999     6666543    2 7999999887633332222        


Q ss_pred             CCEEEEEEcCCCCCEEEE-EeCCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEECCC
Q 040307          124 SAITSFDWAGFDTRRVAT-CSVDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDLRD  196 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~~~  196 (339)
                      ..+....|+| +++.|+. .+.+|  .|+++|+.+++.. .+..+........|+ +++.|+..+. ++  .|+++|+.+
T Consensus       243 g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~  320 (430)
T PRK00178        243 GLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG  320 (430)
T ss_pred             CCcCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            3344689998 8887764 44454  6888899877643 444455556678899 6776665553 33  577778877


Q ss_pred             CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307          197 KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV  274 (339)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  274 (339)
                      ++........    .......|+| +++.|+..+.++.  .|.++|+... . ...+.. ........|+|+|. .++..
T Consensus       321 g~~~~lt~~~----~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg-~-~~~lt~-~~~~~~p~~spdg~-~i~~~  391 (430)
T PRK00178        321 GRAERVTFVG----NYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRG-S-VRILTD-TSLDESPSVAPNGT-MLIYA  391 (430)
T ss_pred             CCEEEeecCC----CCccceEECC-CCCEEEEEEccCCceEEEEEECCCC-C-EEEccC-CCCCCCceECCCCC-EEEEE
Confidence            6633332221    2334578998 7887777664432  4888898763 2 233332 22334678999995 55554


Q ss_pred             e-CCCc--EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          275 A-DDSR--ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       275 ~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      + .++.  +.++++....             ......+.+.+...+|+|-
T Consensus       392 ~~~~g~~~l~~~~~~g~~-------------~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        392 TRQQGRGVLMLVSINGRV-------------RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EecCCceEEEEEECCCCc-------------eEECcCCCCCcCCCccCCC
Confidence            4 4444  5555554333             2233334556778888874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=6e-12  Score=109.92  Aligned_cols=204  Identities=15%  Similarity=0.169  Sum_probs=132.4

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---TTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      .|.++|.+...   ...+..+.     ..+...+|+| ++++|+.+..+   ..|++||+.+++... +..+...+.+++
T Consensus       171 ~l~~~d~~g~~---~~~l~~~~-----~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~  240 (417)
T TIGR02800       171 ELQVADYDGAN---PQTITRSR-----EPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPA  240 (417)
T ss_pred             eEEEEcCCCCC---CEEeecCC-----CceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceE
Confidence            68888876543   23333333     5688899998 99999887654   479999998876433 334555667789


Q ss_pred             ec-CCcEEE-EEeCCC--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC-C-eEEEEecCCCCCc
Q 040307          174 WG-GFNVFA-SVSGDC--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS-N-KVVVLDIRFPTNP  247 (339)
Q Consensus       174 ~~-~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-~-~i~i~d~~~~~~~  247 (339)
                      |+ +++.|+ +.+.++  .|++||+.++..... ..   +........|+| +++.|+..+..+ . .|+++|+.. . .
T Consensus       241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~---~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~-~-~  313 (417)
T TIGR02800       241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TN---GPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG-G-E  313 (417)
T ss_pred             ECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CC---CCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC-C-C
Confidence            99 676665 444444  588899887653222 11   223345678998 788777655433 2 377777764 2 2


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEeCCC---cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDS---RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      ...+..+...+..+.|+|++ ++|+.++.++   .|.+||+....             ...... ........|+|+++.
T Consensus       314 ~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~-~~~~~~p~~spdg~~  378 (417)
T TIGR02800       314 VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG-------------ERVLTD-TGLDESPSFAPNGRM  378 (417)
T ss_pred             EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC-------------eEEccC-CCCCCCceECCCCCE
Confidence            44555556677889999999 5777776654   67788877644             222221 122345689999998


Q ss_pred             eEEEecCC
Q 040307          325 WIAIAFVN  332 (339)
Q Consensus       325 l~~~~~d~  332 (339)
                      |+.++.++
T Consensus       379 l~~~~~~~  386 (417)
T TIGR02800       379 ILYATTRG  386 (417)
T ss_pred             EEEEEeCC
Confidence            87766543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=9.6e-12  Score=108.82  Aligned_cols=219  Identities=15%  Similarity=0.132  Sum_probs=134.6

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-E
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA-T   93 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la-~   93 (339)
                      .+...+.+.+|+|+   ++.|++.+.. +....|.+|++  .++....   + ....+.+....|+|++     +.|+ +
T Consensus       196 ~~~~~~~~p~wSpD---G~~la~~s~~-~~~~~l~~~~l--~~g~~~~---l-~~~~g~~~~~~~SpDG-----~~la~~  260 (430)
T PRK00178        196 QSREPILSPRWSPD---GKRIAYVSFE-QKRPRIFVQNL--DTGRREQ---I-TNFEGLNGAPAWSPDG-----SKLAFV  260 (430)
T ss_pred             cCCCceeeeeECCC---CCEEEEEEcC-CCCCEEEEEEC--CCCCEEE---c-cCCCCCcCCeEECCCC-----CEEEEE
Confidence            44567889999999   9999887731 11235666554  4443332   1 2233445678999999     5555 4


Q ss_pred             eC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccC
Q 040307           94 SG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        94 ~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~  166 (339)
                      ..  +  .|++||+++++.   ..+..+.     .......|+| +++.|+..+. +|  .|+++|+.+++... +....
T Consensus       261 ~~~~g~~~Iy~~d~~~~~~---~~lt~~~-----~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~  330 (430)
T PRK00178        261 LSKDGNPEIYVMDLASRQL---SRVTNHP-----AIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVG  330 (430)
T ss_pred             EccCCCceEEEEECCCCCe---EEcccCC-----CCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC
Confidence            33  2  788899988752   2233333     3455678998 8887776654 33  57788887776432 22222


Q ss_pred             CceeEEEec-CCcEEEEEeCC-C--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEe
Q 040307          167 REVYDISWG-GFNVFASVSGD-C--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLD  240 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d  240 (339)
                      .......|+ +++.++..+.+ +  .|.++|+.+++... +...    .......|+| +|+.++..+.++.  .+.+++
T Consensus       331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~----~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~  404 (430)
T PRK00178        331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT----SLDESPSVAP-NGTMLIYATRQQGRGVLMLVS  404 (430)
T ss_pred             CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC----CCCCCceECC-CCCEEEEEEecCCceEEEEEE
Confidence            233457888 77888776643 3  48889998776322 2221    1223568998 7777776665532  366666


Q ss_pred             cCCCCCceEEEecCCCCeeEEEeccC
Q 040307          241 IRFPTNPVVVLSKHEGSVNGISWAPL  266 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~~v~~~~~~p~  266 (339)
                      +.  +.....+..+.+.+...+|+|-
T Consensus       405 ~~--g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        405 IN--GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CC--CCceEECcCCCCCcCCCccCCC
Confidence            64  3444556555667788888874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=2.8e-12  Score=114.58  Aligned_cols=184  Identities=15%  Similarity=0.153  Sum_probs=145.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc-eeEE---Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDRE-VYDI---SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ  209 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-v~~~---~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  209 (339)
                      +...++.+..+..+.+||...+.....+...... ..++   .++ +.-++++|+.-+.|.+|+......+. ...  .|
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~--GH  174 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLK--GH  174 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eec--cc
Confidence            6788899999999999999887766666432221 1111   122 35688899999999999998554444 233  48


Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++.+-++.|+- +|.++++.++|.. +++|++.+........-+|...|+.+.|.|.   .++|++.|-+.++|+.....
T Consensus       175 eG~iF~i~~s~-dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  175 EGSIFSIVTSL-DGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             CCceEEEEEcc-CCcEEEEEecCcc-eeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccce
Confidence            89999999995 9999999999999 9999999866655677889999999999998   69999999999999666654


Q ss_pred             CCCCCCCCCCcccceeeecc-cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          290 YRSGNGGPSGDVEPELCYQS-MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                                   .....+| ...|..++..+.....++++.|+++++|++
T Consensus       250 -------------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  250 -------------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             -------------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence                         2233445 456999999999888889999999999974

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=6.7e-12  Score=109.58  Aligned_cols=217  Identities=15%  Similarity=0.120  Sum_probs=131.8

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE-eC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT-SG   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~-~~   95 (339)
                      ..++.+.+|+||   |+.|+..+.   .++...||-++..+++...   + ....+.....+|+|++     +.|+. ..
T Consensus       217 ~~~~~~p~wSPD---G~~La~~s~---~~g~~~L~~~dl~tg~~~~---l-t~~~g~~~~~~wSPDG-----~~La~~~~  281 (448)
T PRK04792        217 PEPLMSPAWSPD---GRKLAYVSF---ENRKAEIFVQDIYTQVREK---V-TSFPGINGAPRFSPDG-----KKLALVLS  281 (448)
T ss_pred             CCcccCceECCC---CCEEEEEEe---cCCCcEEEEEECCCCCeEE---e-cCCCCCcCCeeECCCC-----CEEEEEEe
Confidence            456788999999   999998774   3444444445554444332   1 2223344578999999     65554 33


Q ss_pred             -C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccCCc
Q 040307           96 -D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        96 -~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                       +   .|+++|+++++.   ..+..+.     .......|+| +++.|+..+. ++  .|+++|+.+++... +......
T Consensus       282 ~~g~~~Iy~~dl~tg~~---~~lt~~~-----~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~  351 (448)
T PRK04792        282 KDGQPEIYVVDIATKAL---TRITRHR-----AIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ  351 (448)
T ss_pred             CCCCeEEEEEECCCCCe---EECccCC-----CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC
Confidence             2   688888887752   2333333     3456789998 8887776654 33  57777887776433 3222223


Q ss_pred             eeEEEec-CCcEEEEEeCC-C--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecC
Q 040307          169 VYDISWG-GFNVFASVSGD-C--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIR  242 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~  242 (339)
                      ....+|+ ++++|+..+.+ +  .|.++|+.+++... +...    .......|+| +++.|+....++.  .+++++..
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~----~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST----RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC----CCCCCceECC-CCCEEEEEEecCCceEEEEEECC
Confidence            3456899 77777766543 3  45567877765322 2211    1122457998 7777666555443  36666653


Q ss_pred             CCCCceEEEecCCCCeeEEEeccC
Q 040307          243 FPTNPVVVLSKHEGSVNGISWAPL  266 (339)
Q Consensus       243 ~~~~~~~~~~~~~~~v~~~~~~p~  266 (339)
                        +.....+..+.+.+...+|+|-
T Consensus       426 --G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        426 --GRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             --CCceEECcCCCCCcCCCccCCC
Confidence              4455666666677888899874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=1.3e-11  Score=107.89  Aligned_cols=215  Identities=17%  Similarity=0.211  Sum_probs=135.1

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-Ee
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA-TS   94 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la-~~   94 (339)
                      +...+.+.+|+|+   +++||++.... ....|++|++.  ++....    ...+...+.+++|+|++     +.|+ +.
T Consensus       188 ~~~~~~~p~~Spd---g~~la~~~~~~-~~~~i~v~d~~--~g~~~~----~~~~~~~~~~~~~spDg-----~~l~~~~  252 (417)
T TIGR02800       188 SREPILSPAWSPD---GQKLAYVSFES-GKPEIYVQDLA--TGQREK----VASFPGMNGAPAFSPDG-----SKLAVSL  252 (417)
T ss_pred             CCCceecccCCCC---CCEEEEEEcCC-CCcEEEEEECC--CCCEEE----eecCCCCccceEECCCC-----CEEEEEE
Confidence            3456889999999   99999987311 12467776554  333322    13455667789999999     5444 44


Q ss_pred             C---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeccCC
Q 040307           95 G---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-T--TCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        95 ~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~  167 (339)
                      +   . .|++|++.+++.   ..+..+.     .......|+| +++.|+..+.. +  .|+++|+.+++. ..+..+..
T Consensus       253 ~~~~~~~i~~~d~~~~~~---~~l~~~~-----~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~  322 (417)
T TIGR02800       253 SKDGNPDIYVMDLDGKQL---TRLTNGP-----GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGG  322 (417)
T ss_pred             CCCCCccEEEEECCCCCE---EECCCCC-----CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCC
Confidence            3   2 799999887752   2233332     3344678998 88888766543 3  688888877653 34444555


Q ss_pred             ceeEEEec-CCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEec
Q 040307          168 EVYDISWG-GFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDI  241 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~  241 (339)
                      ....+.|+ ++++++.++.++   .|.+||+.+... ..+...    .......|+| +++.|+..+.++.  .+++.+.
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~----~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT----GLDESPSFAP-NGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC----CCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC
Confidence            67788999 788888887776   788999887542 222211    1234568998 7777777666654  2555554


Q ss_pred             CCCCCceEEEecCCCCeeEEEe
Q 040307          242 RFPTNPVVVLSKHEGSVNGISW  263 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~~v~~~~~  263 (339)
                      .  +.....+..+.+.+..++|
T Consensus       397 ~--g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       397 D--GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             C--CceeeECCCCCCCcCCCCC
Confidence            3  3334445444445555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=8.8e-10  Score=88.14  Aligned_cols=266  Identities=11%  Similarity=0.075  Sum_probs=176.3

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      +........++-++|+|+   +++|.++.. .+.+|.|.-|.++...+.+...... .....+.+.+++++++     ++
T Consensus        33 ~~~v~~~~nptyl~~~~~---~~~LY~v~~-~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~g-----~~  102 (346)
T COG2706          33 LQLVAELGNPTYLAVNPD---QRHLYVVNE-PGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDEDG-----RF  102 (346)
T ss_pred             hhhccccCCCceEEECCC---CCEEEEEEe-cCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCCC-----CE
Confidence            333445577889999999   888888773 2237899999999887776652222 1223344899999999     88


Q ss_pred             EEEeC---CcEEEEeecC-CcceeEEEeecCCCc----cC-CCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeee
Q 040307           91 VATSG---DSLRLWEIHD-DRTELKSLLNSNKTS----EF-SSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILET  160 (339)
Q Consensus        91 la~~~---~~i~iw~~~~-~~~~~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~  160 (339)
                      |.++.   +.|.++-++. +.......+..|...    .. ...+....+.| ++++|++..- --.|.+|++..++...
T Consensus       103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~  181 (346)
T COG2706         103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTP  181 (346)
T ss_pred             EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccc
Confidence            88886   3999999866 332222222223311    11 12377888998 8988888764 3478999998775322


Q ss_pred             ee---eccCCceeEEEec-CCcEEEEE-eCCCcEEEEECCCCc-ceeeE------EeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          161 QL---VAHDREVYDISWG-GFNVFASV-SGDCSVRVFDLRDKE-RSTII------YENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       161 ~~---~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~-~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      .-   -......+.|.|+ ++++.... --+++|-+|...... ....+      ............|..+| +|++|.+
T Consensus       182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYa  260 (346)
T COG2706         182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYA  260 (346)
T ss_pred             ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEE
Confidence            11   1234567899999 56554443 458899999988741 11111      11112345678899998 9999999


Q ss_pred             EeeCCCeEEEEecCCCCCceEEE---ecCCCCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCCC
Q 040307          229 VGMDSNKVVVLDIRFPTNPVVVL---SKHEGSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGPG  289 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~  289 (339)
                      +...-..|.+|.+...+..+..+   ..+...-+.+.++|.+. +|+++.. +..|.+|..+...
T Consensus       261 sNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~-~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         261 SNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR-FLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             ecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC-EEEEEccCCCcEEEEEEcCCC
Confidence            87665569999887654433333   23444578999999994 7776664 4579999888766

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.49  E-value=5.7e-12  Score=99.42  Aligned_cols=201  Identities=16%  Similarity=0.285  Sum_probs=141.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      -+.++++++++++   ...|.+|-    ..|++.-+.+..+-++....... ..|...|..+-|+-..     ..+++.+
T Consensus        67 mP~~~~~~~y~~e---~~~L~vg~----~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~-----e~V~s~~  133 (404)
T KOG1409|consen   67 MPSPCSAMEYVSE---SRRLYVGQ----DNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTH-----EWVLSTG  133 (404)
T ss_pred             CCCCceEeeeecc---ceEEEEEE----ecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCc-----eeEEEec
Confidence            3678999999999   99999999    79999988776655544433344 6899999999999877     6777766


Q ss_pred             -CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC--CCCeeeeeeeccCCceeEE
Q 040307           96 -DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI--DREILETQLVAHDREVYDI  172 (339)
Q Consensus        96 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~--~~~~~~~~~~~~~~~v~~~  172 (339)
                       |+-..|.......    .+.++.   +....+++.+.   -.+...|...|.|.+-.+  ..-..+..+.+|.+.+.++
T Consensus       134 ~dk~~~~hc~e~~~----~lg~Y~---~~~~~t~~~~d---~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l  203 (404)
T KOG1409|consen  134 KDKQFAWHCTESGN----RLGGYN---FETPASALQFD---ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL  203 (404)
T ss_pred             cccceEEEeeccCC----cccceE---eeccCCCCcee---eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEE
Confidence             5666665543221    111110   00112222222   114455666676666554  3445778889999999999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      +|. ...+|++|..|..+.+||+...+........  |...|..+...+ --+.+.+++.|+. |.+||++.
T Consensus       204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g--h~~kV~~l~~~~-~t~~l~S~~edg~-i~~w~mn~  271 (404)
T KOG1409|consen  204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG--HNDKVQALSYAQ-HTRQLISCGEDGG-IVVWNMNV  271 (404)
T ss_pred             EEcCCCcEEEeccccCceEEEeccCCcceeeeecc--chhhhhhhhhhh-hheeeeeccCCCe-EEEEeccc
Confidence            999 5789999999999999999887654444433  667888888775 6678889999999 99999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.48  E-value=2.5e-10  Score=106.87  Aligned_cols=300  Identities=16%  Similarity=0.200  Sum_probs=185.0

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecC--CCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFN--PETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +.|.++.|-++   ...++++.    .+|.|.++..+  .+......    ...-...|.+++||||+     .+||..+
T Consensus        76 ~~ivs~~yl~d---~~~l~~~~----~~Gdi~~~~~~~~~~~~~~E~----VG~vd~GI~a~~WSPD~-----Ella~vT  139 (928)
T PF04762_consen   76 DKIVSFQYLAD---SESLCIAL----ASGDIILVREDPDPDEDEIEI----VGSVDSGILAASWSPDE-----ELLALVT  139 (928)
T ss_pred             CcEEEEEeccC---CCcEEEEE----CCceEEEEEccCCCCCceeEE----EEEEcCcEEEEEECCCc-----CEEEEEe
Confidence            67999999999   87888888    79999996443  33333333    23456789999999999     6776654


Q ss_pred             --CcEEEEeec----------C---Ccc--------eeEEEeecCCCc----------------c---CCCCEEEEEEcC
Q 040307           96 --DSLRLWEIH----------D---DRT--------ELKSLLNSNKTS----------------E---FSSAITSFDWAG  133 (339)
Q Consensus        96 --~~i~iw~~~----------~---~~~--------~~~~~~~~~~~~----------------~---~~~~i~~~~~~~  133 (339)
                        +++.+-.-+          .   ++.        +....|.|....                +   ....-..++|..
T Consensus       140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG  219 (928)
T PF04762_consen  140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG  219 (928)
T ss_pred             CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC
Confidence              355443211          0   000        011111111000                0   112445788996


Q ss_pred             CCCCEEEEEeC---C---CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC---CCcEEEEECCCCcceeeE
Q 040307          134 FDTRRVATCSV---D---TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG---DCSVRVFDLRDKERSTII  203 (339)
Q Consensus       134 ~~~~~l~~~~~---d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---d~~i~i~d~~~~~~~~~~  203 (339)
                       ||.++|+.+.   .   ..++||+-+ |....+...-.+--.+++|. .|++||+.-.   ...|.+|.-...+.-...
T Consensus       220 -DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~  297 (928)
T PF04762_consen  220 -DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFT  297 (928)
T ss_pred             -CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEe
Confidence             9999999875   2   579999965 65443333333334578898 5888887764   345666764444322222


Q ss_pred             EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-eEEEecC-CCCeeEEEeccCCCCeEEEEeCCCcEE
Q 040307          204 YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-VVVLSKH-EGSVNGISWAPLYGRRLCSVADDSRAL  281 (339)
Q Consensus       204 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~v~  281 (339)
                      .........+..+.|++ ++.+||..-.+.  |.+|-..+..-. .+.+... ...+..+.|+|..+..|...+.+|.+.
T Consensus       298 l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~  374 (928)
T PF04762_consen  298 LRFDPEEEKVIELAWNS-DSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE  374 (928)
T ss_pred             cCCCCCCceeeEEEECC-CCCEEEEEecCC--ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence            22223456899999997 999999966554  999988763311 2223222 234556999999887888888878776


Q ss_pred             EEEecCCCC-----CCCCCCCC---------------C-cccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          282 IWEVVGPGY-----RSGNGGPS---------------G-DVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       282 iwd~~~~~~-----~~~~~~~~---------------~-~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .+++...-.     .+.+.+..               . ..+|.  ........|.+++|++++..+++...||.|.+|.
T Consensus       375 ~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  375 IYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             EEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence            655533211     11000100               1 11233  2334577899999999988788889999999886

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.48  E-value=1.7e-12  Score=115.85  Aligned_cols=181  Identities=18%  Similarity=0.200  Sum_probs=137.7

Q ss_pred             CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307           96 DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus        96 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                      +.+.+||.....  ....+..... .......-+.+++ +.-++++|+.-+.|.+|+....+.-..+.+|.+.+.++.|+
T Consensus       109 ns~~i~d~~~~~--~~~~i~~~er-~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s  184 (967)
T KOG0974|consen  109 NSLLIRDSKNSS--VLSKIQSDER-CTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTS  184 (967)
T ss_pred             ceEEEEecccCc--eehhcCCCce-EEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEc
Confidence            388888887764  2222222110 0001122233454 67899999999999999987433333577999999999999


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307          176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH  254 (339)
Q Consensus       176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~  254 (339)
                       ++.++++.+.|+++++|++.+.+......  ..|...+..+.|+| +  .+++++.|-+ .++|+..  ...+..+..|
T Consensus       185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~--fgHsaRvw~~~~~~-n--~i~t~gedct-crvW~~~--~~~l~~y~~h  256 (967)
T KOG0974|consen  185 LDGRYIASVSDDRSIRLWPIDSREVLGCTG--FGHSARVWACCFLP-N--RIITVGEDCT-CRVWGVN--GTQLEVYDEH  256 (967)
T ss_pred             cCCcEEEEEecCcceeeeecccccccCccc--ccccceeEEEEecc-c--eeEEeccceE-EEEEecc--cceehhhhhh
Confidence             99999999999999999999988665322  34889999999997 4  9999999999 9999765  3445567777


Q ss_pred             C-CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          255 E-GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       255 ~-~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      . ..++.++..++. ..++|++.|+.+++|++....
T Consensus       257 ~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  257 SGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             hhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccc
Confidence            5 479999999998 599999999999999987755

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=6.4e-11  Score=102.68  Aligned_cols=222  Identities=14%  Similarity=0.103  Sum_probs=132.6

Q ss_pred             CCeeEEEeeecCCcccE--EEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           18 WPISTVAWSVRHDRKSR--LAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~--la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ..+.+-+||||   |+.  ++..++   .++.-.||-.+..+++...   + ....+.....+|+|||     +.||..+
T Consensus       185 ~~~~sP~wSPD---G~~~~~~y~S~---~~g~~~I~~~~l~~g~~~~---l-t~~~g~~~~p~wSPDG-----~~Laf~s  249 (428)
T PRK01029        185 SLSITPTWMHI---GSGFPYLYVSY---KLGVPKIFLGSLENPAGKK---I-LALQGNQLMPTFSPRK-----KLLAFIS  249 (428)
T ss_pred             CCcccceEccC---CCceEEEEEEc---cCCCceEEEEECCCCCceE---e-ecCCCCccceEECCCC-----CEEEEEE
Confidence            45677899999   875  333442   3455555556665555443   1 2344556678999999     5665433


Q ss_pred             ---C--c--EEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEE--ECCC-Ceeeeeee
Q 040307           96 ---D--S--LRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIW--DIDR-EILETQLV  163 (339)
Q Consensus        96 ---~--~--i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~--d~~~-~~~~~~~~  163 (339)
                         +  .  +.+|++..+.. ..........     ......+|+| +++.|+..+ .+|...+|  ++.. +.....+.
T Consensus       250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~-----~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        250 DRYGNPDLFIQSFSLETGAIGKPRRLLNEAF-----GTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             CCCCCcceeEEEeecccCCCCcceEeecCCC-----CCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence               1  3  44467665321 1222222221     2345679998 898777665 45654555  4432 22334444


Q ss_pred             ccCCceeEEEec-CCcEEEEEeCC---CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-C-CeEE
Q 040307          164 AHDREVYDISWG-GFNVFASVSGD---CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-S-NKVV  237 (339)
Q Consensus       164 ~~~~~v~~~~~~-~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~-~~i~  237 (339)
                      .+...+....|+ +++.|+..+.+   ..|.+||+.+++.... ...   ...+....|+| +++.|+....+ + ..|+
T Consensus       324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~---~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTS---PENKESPSWAI-DSLHLVYSAGNSNESELY  398 (428)
T ss_pred             cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCC---CCCccceEECC-CCCEEEEEECCCCCceEE
Confidence            445567788999 78888776543   4689999988764332 221   23567789998 77777654432 2 2488


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLY  267 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~  267 (339)
                      ++|+.. ++ ...+....+.+...+|+|..
T Consensus       399 ~vdl~~-g~-~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        399 LISLIT-KK-TRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEECCC-CC-EEEeecCCCcccCceecCCC
Confidence            888875 33 34444445667888998864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=6.5e-11  Score=102.29  Aligned_cols=280  Identities=16%  Similarity=0.228  Sum_probs=186.3

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccc-----------eeeEeecCCCCceEEEEcCCCCCC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA-----------DNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      ....|++|+..   ..++|+|+    .||.+++..+..++.....           ...+ .+|+..|.-+.|+.+.   
T Consensus        15 vkL~c~~WNke---~gyIAcgG----~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~~---   83 (1189)
T KOG2041|consen   15 VKLHCAEWNKE---SGYIACGG----ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNENN---   83 (1189)
T ss_pred             ceEEEEEEccc---CCeEEecc----ccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEecccc---
Confidence            46789999999   99999999    8999999877654432221           1122 5899999999999888   


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eee
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET-QLV  163 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~  163 (339)
                        +-|.++. + .|.+|-+-.+.+-....-...+     +.|.+++|+. +|..|+....||.|.+-.++..+... .++
T Consensus        84 --QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnK-----SvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLk  155 (1189)
T KOG2041|consen   84 --QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNK-----SVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELK  155 (1189)
T ss_pred             --ccccccCCCceEEEEeeecccHHHHHhhCcCc-----cEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcc
Confidence              6666654 3 9999999887632111112223     7899999996 99999999999999998876554221 222


Q ss_pred             ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcce-------e-eEEeCCCCCCCeEEEEEe-------cCCCCeEE
Q 040307          164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERS-------T-IIYENPVQDCPLLRLEWN-------KADPRFMA  227 (339)
Q Consensus       164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-------~-~~~~~~~~~~~v~~~~~~-------p~~~~~l~  227 (339)
                        ......+.|+ +...++.+-..|.+.+||....-..       . ...........+..+.|.       |.+.-.|+
T Consensus       156 --g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la  233 (1189)
T KOG2041|consen  156 --GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA  233 (1189)
T ss_pred             --hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence              1234578899 7777777778899999998754211       0 011111122346667774       23556888


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC---------cEEEEEecCCCCCCCCCCCC
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS---------RALIWEVVGPGYRSGNGGPS  298 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------~v~iwd~~~~~~~~~~~~~~  298 (339)
                      ++-.+|. +.|..-.+...|+..-.  .-.+..+.|+++| .+|+.++.+.         .|.+|..-..-         
T Consensus       234 vcy~nGr-~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i---------  300 (1189)
T KOG2041|consen  234 VCYANGR-MQIMRSENDPEPVVVDT--GMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHI---------  300 (1189)
T ss_pred             EEEcCce-ehhhhhcCCCCCeEEec--ccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhh---------
Confidence            8888888 88876665555544333  3678899999999 5999988652         33333222111         


Q ss_pred             CcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                          .-...-....|++++|-..|- =++...|+.|.+
T Consensus       301 ----~gtlkvpg~~It~lsWEg~gL-riA~Avdsfiyf  333 (1189)
T KOG2041|consen  301 ----VGTLKVPGSCITGLSWEGTGL-RIAIAVDSFIYF  333 (1189)
T ss_pred             ----eEEEecCCceeeeeEEcCCce-EEEEEecceEEE
Confidence                112233456799999987763 345556666654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=1.6e-10  Score=97.70  Aligned_cols=184  Identities=12%  Similarity=0.097  Sum_probs=125.1

Q ss_pred             CEE-EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307          137 RRV-ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL  214 (339)
Q Consensus       137 ~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  214 (339)
                      +++ ++-..++.|.+.|..+.+.+..+......-..+.++ +++++++++.||.|.++|+.+.+....+..+    ....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----~~~~   81 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----GNPR   81 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----SEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----CCcc
Confidence            444 455568999999999999999987654444456788 7999999999999999999999976666554    4678


Q ss_pred             EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      .++++| +|++++++......+.++|.++ .++++.+...       ...+.++..+|..+.++++--+.+.|.+.|+..
T Consensus        82 ~i~~s~-DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   82 GIAVSP-DGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEE---TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEcC-CCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            899998 9999988876555599999987 5667766542       346778888898854555555568888878776


Q ss_pred             CCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEE-ecCCeEEEEe
Q 040307          288 PGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAI-AFVNKLQLLK  338 (339)
Q Consensus       288 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w~  338 (339)
                      ..            .+. ..........+..|+|++++++++ ..++.+-+++
T Consensus       160 ~~------------~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD  200 (369)
T PF02239_consen  160 PK------------NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID  200 (369)
T ss_dssp             SS------------CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             cc------------ccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence            65            122 333445567889999999987765 4566676665

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=7.2e-12  Score=97.74  Aligned_cols=259  Identities=14%  Similarity=0.244  Sum_probs=170.0

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-CcccceeeE-----------eecCCCCceEEEEcC
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-SDFSADNRL-----------IFDHPYTPTNIAFFP   81 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-~~~~~~~~~-----------~~~~~~~v~~l~~~~   81 (339)
                      ....+.|+++.|...   |.+||+|.    ..|.|.+|.-.... .+......+           ...-...|..+.|..
T Consensus        23 ~tead~ItaVefd~t---g~YlatGD----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~   95 (460)
T COG5170          23 STEADKITAVEFDET---GLYLATGD----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD   95 (460)
T ss_pred             ccccceeeEEEeccc---cceEeecC----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence            344578999999999   99999999    78999996544322 111110011           012245688999988


Q ss_pred             CCCCCCCCeEEEeCC-cEEEEeecCCcceeE-------------------------EEeecCC-----------CccCCC
Q 040307           82 SEETLNPDIVATSGD-SLRLWEIHDDRTELK-------------------------SLLNSNK-----------TSEFSS  124 (339)
Q Consensus        82 ~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~-------------------------~~~~~~~-----------~~~~~~  124 (339)
                      ++.+  ..+|+++.+ +|++|.+.....+.+                         -.+..|.           ...|.-
T Consensus        96 ~t~r--~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y  173 (460)
T COG5170          96 DTGR--NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY  173 (460)
T ss_pred             CCCc--ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence            7632  267888887 999998865410000                         0000010           123336


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccC-----CceeEEEecC--CcEEEEEeCCCcEEEEEC
Q 040307          125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHD-----REVYDISWGG--FNVFASVSGDCSVRVFDL  194 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~-----~~v~~~~~~~--~~~l~~~~~d~~i~i~d~  194 (339)
                      .|+++.|+. +...++++ .|-.|.+|+++-..   .+.-++.|.     .-|++..|+|  .+.++-.+..|.|++-|+
T Consensus       174 hiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         174 HINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             EeeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence            788999986 76777664 57889999986433   222233333     4578889993  778888889999999999


Q ss_pred             CCCccee---eEEeC----------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC-----
Q 040307          195 RDKERST---IIYEN----------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG-----  256 (339)
Q Consensus       195 ~~~~~~~---~~~~~----------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-----  256 (339)
                      |+.....   .+++.          ......|..+.|++ +|+++++-...  .+++||++....|+.+...|..     
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl--tvkiwDvnm~k~pikTi~~h~~l~~~l  328 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL--TVKIWDVNMAKNPIKTIPMHCDLMDEL  328 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc--eEEEEecccccCCceeechHHHHHHHH
Confidence            9653111   11110          01235678899997 99999875544  3999999998899998866532     


Q ss_pred             -------Ce---eEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          257 -------SV---NGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       257 -------~v---~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                             .|   ..+.|+-+. +.+++|+..+...+|-..+
T Consensus       329 ~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         329 NDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HhhhhccceeeeEEEEecCCc-ccccccccccceeeecccc
Confidence                   33   357888887 5888999888888876433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.42  E-value=3.6e-10  Score=93.94  Aligned_cols=287  Identities=16%  Similarity=0.135  Sum_probs=177.1

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeec-----------cccCCeEEEEecCCCCCcccceeeEeecCCCCce-EE
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFL-----------EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT-NI   77 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~-----------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~l   77 (339)
                      .+.++.| ..|..+.|||.   +++|.+=...           ...++.+.+||  ..++.+...... .....-.+ -+
T Consensus        65 ~l~~~~~-~~V~~~~fSP~---~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd--~~sg~iv~sf~~-~~q~~~~Wp~~  137 (561)
T COG5354          65 KLVRFRH-PDVKYLDFSPN---EKYLVTWSREPIIEPEIEISPFTSKNNVFVWD--IASGMIVFSFNG-ISQPYLGWPVL  137 (561)
T ss_pred             heeeeec-CCceecccCcc---cceeeeeccCCccChhhccCCccccCceeEEe--ccCceeEeeccc-cCCccccccee
Confidence            3444444 45888999999   9999886541           11234577755  444444431111 11222234 78


Q ss_pred             EEcCCCCCCCCCeEEEeC-CcEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEE-----EeCCCeE
Q 040307           78 AFFPSEETLNPDIVATSG-DSLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVAT-----CSVDTTC  148 (339)
Q Consensus        78 ~~~~~~~~~~~~~la~~~-~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~d~~v  148 (339)
                      .|+-+.     .++|=-. +.++|+++ ++.  ..+...++.       ..|....|+|. ++..|+.     .+.++.+
T Consensus       138 k~s~~D-----~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~-------~gi~dFsisP~~n~~~la~~tPEk~~kpa~~  204 (561)
T COG5354         138 KFSIDD-----KYVARVVGSSLYIHEI-TDNIEEHPFKNLRP-------VGILDFSISPEGNHDELAYWTPEKLNKPAMV  204 (561)
T ss_pred             eeeecc-----hhhhhhccCeEEEEec-CCccccCchhhccc-------cceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence            899988     6766554 49999997 332  122333332       56888999984 3344454     4567899


Q ss_pred             EEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe-----------CCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307          149 VIWDIDREILETQLVAHDREVYDISWG-GFNVFASVS-----------GDCSVRVFDLRDKERSTIIYENPVQDCPLLRL  216 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  216 (339)
                      ++|.+..+..+.+-.-....=..+.|+ .+++|+.--           ....++|++++....+... .   -.++|...
T Consensus       205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~---~~~pVhdf  280 (561)
T COG5354         205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D---LKDPVHDF  280 (561)
T ss_pred             EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-c---ccccceee
Confidence            999998666544332222223456777 455543211           2357889999866644443 1   35799999


Q ss_pred             EEecCCCCeEEEE-eeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC---CcEEEEEecCCCCCC
Q 040307          217 EWNKADPRFMATV-GMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD---SRALIWEVVGPGYRS  292 (339)
Q Consensus       217 ~~~p~~~~~l~~~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~v~iwd~~~~~~~~  292 (339)
                      +|.|...++.++. -.... +.++|++.  ...  +......=+.+.|+|.+ ++++.++-|   |.+-+||.....   
T Consensus       281 ~W~p~S~~F~vi~g~~pa~-~s~~~lr~--Nl~--~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf---  351 (561)
T COG5354         281 TWEPLSSRFAVISGYMPAS-VSVFDLRG--NLR--FYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF---  351 (561)
T ss_pred             eecccCCceeEEecccccc-eeeccccc--ceE--EecCCcccccccccCcc-cEEEEecCCccccceEEeccCCce---
Confidence            9999444444443 34444 99999985  233  33345566788999999 588877754   789999987765   


Q ss_pred             CCCCCCCcccceeeecccceeEEEEecCCCCceEEEe------cCCeEEEEeC
Q 040307          293 GNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA------FVNKLQLLKV  339 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~------~d~~v~~w~v  339 (339)
                                .....-......-+.|+|+++++.+..      -|+.+.||++
T Consensus       352 ----------~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         352 ----------KVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             ----------EEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence                      111111233455678999999776532      3889999986

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.40  E-value=3.1e-10  Score=95.87  Aligned_cols=189  Identities=22%  Similarity=0.292  Sum_probs=145.2

Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEc------C-------------CCCCEEEEEeCCCe
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWA------G-------------FDTRRVATCSVDTT  147 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~~d~~  147 (339)
                      .++|... | .++||+...++  ....+....  ...+..++..|.      |             .+...++-|...|.
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~--~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQ--LQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             heEeecCCCCeEEEEEccCce--eeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            5777665 4 99999999886  333332211  011344444443      2             24467888999999


Q ss_pred             EEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          148 CVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |.+|+...++....+.  .|.+.|.++.++ +-..|.+++.|+.+..|+............   .+..+.+++.+| ++.
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~-D~~  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISP-DGK  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcC-CCC
Confidence            9999999998777774  688999999999 788999999999999999998875444433   356788999998 799


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccC-----CCCeEEEEeCCCcEEEEEecCCC
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL-----YGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+++++..   |++||+.. .+.+..+.+|.++|+++.|--.     |..+|.+...+..+.+|-+....
T Consensus       158 ~l~~as~~---ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  158 ILLTASRQ---IKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             EEEeccce---EEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence            99988764   99999998 7789999999999999999887     64566666677888999887744

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.38  E-value=1e-10  Score=98.69  Aligned_cols=185  Identities=11%  Similarity=0.103  Sum_probs=145.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeec---cCCceeEEEec---------------------CCcEEEEEeCCCcEE
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVA---HDREVYDISWG---------------------GFNVFASVSGDCSVR  190 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~---------------------~~~~l~~~~~d~~i~  190 (339)
                      ...++|....||.+++||...++....+..   -++..++..|.                     +...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            568999999999999999988876555531   22334444443                     124677888899999


Q ss_pred             EEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCe
Q 040307          191 VFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRR  270 (339)
Q Consensus       191 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  270 (339)
                      +|+...++.... .....|.+.|.++.++. +-..|.+++.|.. +..|+... ...++........+.+++.+||+ +.
T Consensus        84 ~ys~~~g~it~~-~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~-v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~-~~  158 (541)
T KOG4547|consen   84 LYSVAGGEITAK-LSTDKHYGNVNEILDAQ-RLGCIYSVGADLK-VVYILEKE-KVIIRIWKEQKPLVSSLCISPDG-KI  158 (541)
T ss_pred             EEEecCCeEEEE-EecCCCCCcceeeeccc-ccCceEecCCcee-EEEEeccc-ceeeeeeccCCCccceEEEcCCC-CE
Confidence            999999885444 44346889999999984 8889999999998 99999987 66778888888899999999998 69


Q ss_pred             EEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC-----CCceEEE-ecCCeEEEEe
Q 040307          271 LCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL-----ELDWIAI-AFVNKLQLLK  338 (339)
Q Consensus       271 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-----~~~l~~~-~~d~~v~~w~  338 (339)
                      +++++  +.|++||+++.+            ....+.+|.++|.+++|--+     |.+++++ ..+..+-+|.
T Consensus       159 l~~as--~~ik~~~~~~ke------------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKE------------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             EEecc--ceEEEEEccCce------------EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            99887  689999999988            33456689999999999887     6677754 4566677775

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.4e-09  Score=91.40  Aligned_cols=279  Identities=21%  Similarity=0.278  Sum_probs=172.2

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--   95 (339)
                      ..=+-+.|||.   |.||++-.     ...|.+|  ..+.-....    .+.|++ |.-+.|||..     ++|++-+  
T Consensus       211 WTetyv~wSP~---GTYL~t~H-----k~GI~lW--GG~~f~r~~----RF~Hp~-Vq~idfSP~E-----kYLVT~s~~  270 (698)
T KOG2314|consen  211 WTETYVRWSPK---GTYLVTFH-----KQGIALW--GGESFDRIQ----RFYHPG-VQFIDFSPNE-----KYLVTYSPE  270 (698)
T ss_pred             ceeeeEEecCC---ceEEEEEe-----ccceeee--cCccHHHHH----hccCCC-ceeeecCCcc-----ceEEEecCC
Confidence            34567899999   99999988     6778894  433322222    367775 8999999999     8998843  


Q ss_pred             -----------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           96 -----------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        96 -----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                                 +.++|||+.++.  ..+.+.......  ..-.-+.||- |++++|.-.. ..|.||+..+..++-.-.-
T Consensus       271 p~~~~~~d~e~~~l~IWDI~tG~--lkrsF~~~~~~~--~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Ksl  344 (698)
T KOG2314|consen  271 PIIVEEDDNEGQQLIIWDIATGL--LKRSFPVIKSPY--LKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSL  344 (698)
T ss_pred             ccccCcccCCCceEEEEEccccc--hhcceeccCCCc--cccceEEecc-CCceeEEecc-ceEEEEecCceeeeccccc
Confidence                       179999999997  555554421100  1222467984 9999998776 6789999766443322222


Q ss_pred             cCCceeEEEecC-CcEEEEEeC-----CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--------
Q 040307          165 HDREVYDISWGG-FNVFASVSG-----DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--------  230 (339)
Q Consensus       165 ~~~~v~~~~~~~-~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--------  230 (339)
                      .-..|....|+| +++||--..     -..+.+-.+.+.+.....-.   +.-.=..+.|-. +|.+|+.--        
T Consensus       345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk-~gdyLcvkvdR~tK~~~  420 (698)
T KOG2314|consen  345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQK-SGDYLCVKVDRHTKSKV  420 (698)
T ss_pred             CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEecc-CCcEEEEEEEeeccccc
Confidence            345688889995 444443221     12233444433332111100   111113355653 677776522        


Q ss_pred             --eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC--CCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307          231 --MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD--DSRALIWEVVGPGYRSGNGGPSGDVEPELC  306 (339)
Q Consensus       231 --~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  306 (339)
                        .-.+ +.|+.++...-|+..+.- ...|...+|-|.|+++.+..+.  ..++.+|.++....           .+.+.
T Consensus       421 ~g~f~n-~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----------~~~lV  487 (698)
T KOG2314|consen  421 KGQFSN-LEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----------KPSLV  487 (698)
T ss_pred             cceEee-EEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----------chhhh
Confidence              1123 778888876677776664 6789999999999644444433  35799999985331           12222


Q ss_pred             ec-ccceeEEEEecCCCCceEEE---ecCCeEEEEeC
Q 040307          307 YQ-SMAEINVVRWSPLELDWIAI---AFVNKLQLLKV  339 (339)
Q Consensus       307 ~~-~~~~i~~~~~~p~~~~l~~~---~~d~~v~~w~v  339 (339)
                      .. .....+.+.|+|.|+.++.+   |..|.+.+++.
T Consensus       488 k~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  488 KELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             hhhcccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence            21 22457889999999987754   45777888763

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.37  E-value=1.7e-09  Score=89.36  Aligned_cols=249  Identities=12%  Similarity=0.051  Sum_probs=166.1

Q ss_pred             CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEe-ecC---CCc
Q 040307           45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLL-NSN---KTS  120 (339)
Q Consensus        45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~-~~~---~~~  120 (339)
                      +|.=.||..+.++..+.....+   |  .-.+=..+.||+    +++...++.|.+||.++...+.+..- ...   +..
T Consensus       245 eG~GnlYSvdldGkDlrrHTnF---t--dYY~R~~nsDGk----rIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~  315 (668)
T COG4946         245 EGVGNLYSVDLDGKDLRRHTNF---T--DYYPRNANSDGK----RIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQP  315 (668)
T ss_pred             cCccceEEeccCCchhhhcCCc---h--hccccccCCCCc----EEEEecCCcEEEeCCCcCcceeeecCCccccccccc
Confidence            6666677777777666542111   1  122333466774    56666677999999988753332211 111   111


Q ss_pred             cCCCCEEEEE-EcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC-cEEEEECCCC
Q 040307          121 EFSSAITSFD-WAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC-SVRVFDLRDK  197 (339)
Q Consensus       121 ~~~~~i~~~~-~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~i~d~~~~  197 (339)
                      .+..+..-+. |++.+|++++..+. |...|.+...+-.++ + ++...|.-..+. +++-++.|..|| .+-++|.++.
T Consensus       316 k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~  392 (668)
T COG4946         316 KFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG  392 (668)
T ss_pred             cccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc
Confidence            1112222232 66668999998885 788888776654433 2 567778888887 777899999999 8999999998


Q ss_pred             cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          198 ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      +......    .-+.|-++..+| +|++++++..... +.+.|+.+ +++...-+...+-|+.++|+|++ +++|-+--+
T Consensus       393 e~kr~e~----~lg~I~av~vs~-dGK~~vvaNdr~e-l~vididn-gnv~~idkS~~~lItdf~~~~ns-r~iAYafP~  464 (668)
T COG4946         393 EVKRIEK----DLGNIEAVKVSP-DGKKVVVANDRFE-LWVIDIDN-GNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPE  464 (668)
T ss_pred             eEEEeeC----CccceEEEEEcC-CCcEEEEEcCceE-EEEEEecC-CCeeEecccccceeEEEEEcCCc-eeEEEecCc
Confidence            7433322    237899999998 9999988777666 99999988 44333334446789999999999 699988766


Q ss_pred             C----cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307          278 S----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       278 g----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  326 (339)
                      |    .|+++|+...+             ........+.=.+-+|.|++++|.
T Consensus       465 gy~tq~Iklydm~~~K-------------iy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         465 GYYTQSIKLYDMDGGK-------------IYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             ceeeeeEEEEecCCCe-------------EEEecCCcccccCcccCCCCcEEE
Confidence            5    69999999977             333333333445667888888755

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.37  E-value=4.1e-09  Score=98.93  Aligned_cols=248  Identities=14%  Similarity=0.221  Sum_probs=156.7

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC-------------------------CCccc---------
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE-------------------------TSDFS---------   61 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~-------------------------~~~~~---------   61 (339)
                      .+.+|.+++||||   +..||..+    .++++.+..-+-+                         .-.+.         
T Consensus       119 vd~GI~a~~WSPD---~Ella~vT----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~  191 (928)
T PF04762_consen  119 VDSGILAASWSPD---EELLALVT----GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR  191 (928)
T ss_pred             EcCcEEEEEECCC---cCEEEEEe----CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhh
Confidence            4679999999999   99999999    6888887542210                         00000         


Q ss_pred             --ceeeEe------ecCCCCceEEEEcCCCCCCCCCeEEEeC-------C-cEEEEeecCCcceeEEEeecCCCccCCCC
Q 040307           62 --ADNRLI------FDHPYTPTNIAFFPSEETLNPDIVATSG-------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSA  125 (339)
Q Consensus        62 --~~~~~~------~~~~~~v~~l~~~~~~~~~~~~~la~~~-------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  125 (339)
                        ..+...      ....+.-..++|-.||     .++|+.+       . .++||+-+ +.  ...+-+.-.     +-
T Consensus       192 ~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG-----~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~-----gL  258 (928)
T PF04762_consen  192 QLRDPTVPKVDEGKLSWDDGRVRISWRGDG-----EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVD-----GL  258 (928)
T ss_pred             hccCCCCCccccCccccCCCceEEEECCCC-----cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCC-----Cc
Confidence              000000      0133355688999999     8988764       1 78999876 32  332222211     22


Q ss_pred             EEEEEEcCCCCCEEEEEeC---CCeEEEEECCC---CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307          126 ITSFDWAGFDTRRVATCSV---DTTCVIWDIDR---EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE  198 (339)
Q Consensus       126 i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~  198 (339)
                      -.+++|.| .|++||+.-.   ...|.+|.-+.   ++....+......|..++|+ +++.|+..-.|. |.+|-..+-.
T Consensus       259 e~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  259 EGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             cCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            33789999 9999998765   35667776432   22222222345679999999 899999877665 9999887765


Q ss_pred             ceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC----CCC----------------------------
Q 040307          199 RSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR----FPT----------------------------  245 (339)
Q Consensus       199 ~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~----~~~----------------------------  245 (339)
                      --.. .... .....+..+.|+|.+...|...+.++. +..++..    ...                            
T Consensus       337 WYLKqei~~-~~~~~~~~~~Wdpe~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V  414 (928)
T PF04762_consen  337 WYLKQEIRF-SSSESVNFVKWDPEKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV  414 (928)
T ss_pred             EEEEEEEEc-cCCCCCCceEECCCCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence            2111 1111 122345559999987777877777666 5444332    110                            


Q ss_pred             -Cce--EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          246 -NPV--VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       246 -~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                       .|+  ..+. -...|.+++|+++++ .+++-..||.+.+|......
T Consensus       415 PPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  415 PPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             CchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCC
Confidence             111  1122 246899999999984 69999999999999976654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=3e-08  Score=82.34  Aligned_cols=260  Identities=8%  Similarity=0.036  Sum_probs=154.5

Q ss_pred             CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---------C--cEEEEeecCCcceeEEEe
Q 040307           46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---------D--SLRLWEIHDDRTELKSLL  114 (339)
Q Consensus        46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---------~--~i~iw~~~~~~~~~~~~~  114 (339)
                      +.|.+  ++.++.+...  .+..+  .....+ ++|+++    .++++.+         +  .|.+||..+.+  .+..+
T Consensus        27 ~~v~V--iD~~~~~v~g--~i~~G--~~P~~~-~spDg~----~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i   93 (352)
T TIGR02658        27 TQVYT--IDGEAGRVLG--MTDGG--FLPNPV-VASDGS----FFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADI   93 (352)
T ss_pred             ceEEE--EECCCCEEEE--EEEcc--CCCcee-ECCCCC----EEEEEeccccccccCCCCCEEEEEECccCc--EEeEE
Confidence            78999  5555555554  23222  233345 999995    4555555         3  99999999987  55555


Q ss_pred             ecCCCcc--CCCCEEEEEEcCCCCCEEEEEe-C-CCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEE
Q 040307          115 NSNKTSE--FSSAITSFDWAGFDTRRVATCS-V-DTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVR  190 (339)
Q Consensus       115 ~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~-~-d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~  190 (339)
                      ......+  ....-..++++| ++++++... . +..|.+.|+.+++.+..+.- .+...-...++...+ .-+.||...
T Consensus        94 ~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~-~~~~Dg~~~  170 (352)
T TIGR02658        94 ELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFF-MHCRDGSLA  170 (352)
T ss_pred             ccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccE-EEeecCceE
Confidence            4321100  002334788998 999888776 3 68999999999998888764 222222333332222 334566655


Q ss_pred             EEECCCCcceee----EEeCCCCCCCe-EEEEEecCCCCeEEEEeeCCCeEEEEecCCCC----CceEEEec-------C
Q 040307          191 VFDLRDKERSTI----IYENPVQDCPL-LRLEWNKADPRFMATVGMDSNKVVVLDIRFPT----NPVVVLSK-------H  254 (339)
Q Consensus       191 i~d~~~~~~~~~----~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~----~~~~~~~~-------~  254 (339)
                      ...+........    ++..  ...++ ..-.|.+.++.++.+... |. |.+.|+....    .++..+..       .
T Consensus       171 ~v~~d~~g~~~~~~~~vf~~--~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       171 KVGYGTKGNPKIKPTEVFHP--EDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             EEEecCCCceEEeeeeeecC--CccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccC
Confidence            544433222111    1110  00000 111445546777766555 77 9999964421    22222211       2


Q ss_pred             CCCeeEEEeccCCCCeEEEEe----------CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC-
Q 040307          255 EGSVNGISWAPLYGRRLCSVA----------DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL-  323 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-  323 (339)
                      .+.+.-++++|++. .++...          ..+.|.++|..+.+             ......-...+..++++||++ 
T Consensus       247 P~g~q~ia~~~dg~-~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-------------vi~~i~vG~~~~~iavS~Dgkp  312 (352)
T TIGR02658       247 PGGWQQVAYHRARD-RIYLLADQRAKWTHKTASRFLFVVDAKTGK-------------RLRKIELGHEIDSINVSQDAKP  312 (352)
T ss_pred             CCcceeEEEcCCCC-EEEEEecCCccccccCCCCEEEEEECCCCe-------------EEEEEeCCCceeeEEECCCCCe
Confidence            23444599999985 555532          22579999988877             444444566899999999998 


Q ss_pred             ceEEEe-cCCeEEEEeC
Q 040307          324 DWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       324 ~l~~~~-~d~~v~~w~v  339 (339)
                      .|++.. .++.|.++++
T Consensus       313 ~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       313 LLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EEEEeCCCCCcEEEEEC
Confidence            777665 6788988874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=9.2e-11  Score=91.68  Aligned_cols=247  Identities=15%  Similarity=0.162  Sum_probs=165.1

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCc---ceeEEEeecCCCc-------cCCCCEEEEEEcCC-CC
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDR---TELKSLLNSNKTS-------EFSSAITSFDWAGF-DT  136 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~---~~~~~~~~~~~~~-------~~~~~i~~~~~~~~-~~  136 (339)
                      ....|+++.|...|     .+||+|.  +.|.+|.-+...   .+....+++|..+       +....|..+.|... ..
T Consensus        25 ead~ItaVefd~tg-----~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          25 EADKITAVEFDETG-----LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             ccceeeEEEecccc-----ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            45679999999999     8999997  388888765543   3344556666521       12246778888742 23


Q ss_pred             CEEEEEeCCCeEEEEECCCC------------------------------------------eeeeee-eccCCceeEEE
Q 040307          137 RRVATCSVDTTCVIWDIDRE------------------------------------------ILETQL-VAHDREVYDIS  173 (339)
Q Consensus       137 ~~l~~~~~d~~v~i~d~~~~------------------------------------------~~~~~~-~~~~~~v~~~~  173 (339)
                      ..++..+.|.+|++|.+...                                          .+.+.+ ..|...+.++.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence            46777788999999987532                                          011112 34777788999


Q ss_pred             ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC-----CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307          174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD-----CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP  247 (339)
Q Consensus       174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~  247 (339)
                      ++ +...++++ .|-.|.+|.+......-.+.....+.     .-|++..|+|.....+.-.+..|. |++-|+|...-+
T Consensus       180 ~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~alc  257 (460)
T COG5170         180 FNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQSALC  257 (460)
T ss_pred             ecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhhhhc
Confidence            98 66666665 57789999988765433333221122     357888999987788888888888 999999953211


Q ss_pred             -----eEEE----------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cc--
Q 040307          248 -----VVVL----------SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QS--  309 (339)
Q Consensus       248 -----~~~~----------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~--  309 (339)
                           +...          ..-...|..+.|+++| +++++-+. .+|+|||....+            .|+... -|  
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k------------~pikTi~~h~~  323 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAK------------NPIKTIPMHCD  323 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccccc------------CCceeechHHH
Confidence                 1111          1112468889999999 58877665 589999999987            333222 11  


Q ss_pred             ----------ccee---EEEEecCCCCceEEEecCCeEEEE
Q 040307          310 ----------MAEI---NVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       310 ----------~~~i---~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                                ...|   ..+.||-+...+++++..+..-++
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                      2223   458899888888888877766554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=2.3e-09  Score=90.28  Aligned_cols=276  Identities=13%  Similarity=0.182  Sum_probs=173.3

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe--
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS--   94 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~--   94 (339)
                      ..++...++|++   |+++|++.     +..+.|+++....  ...    ..... .++++.|+|-+     .+|.+-  
T Consensus        34 ~~~~~v~~~S~~---G~lfA~~~-----~~~v~i~~~~~~~--~~l----t~~~~-~~~~L~fSP~g-----~yL~T~e~   93 (566)
T KOG2315|consen   34 SRPCNVFAYSNN---GRLFAYSD-----NQVVKVFEIATLK--VVL----CVELK-KTYDLLFSPKG-----NYLLTWEP   93 (566)
T ss_pred             CCcceeEEEcCC---CcEEEEEc-----CCeEEEEEccCCc--EEE----Eeccc-eeeeeeecccc-----cccccccc
Confidence            345778899999   99999999     8999996655443  221    12223 78999999999     787652  


Q ss_pred             ---------CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           95 ---------GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        95 ---------~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                               +. .+.+|+++++.  ....+....     ..-.+..|++ |.. +++=-..+.+++|++...+.... .-
T Consensus        94 ~~i~~~~~~~~pn~~v~~vet~~--~~s~~q~k~-----Q~~W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~~-kl  163 (566)
T KOG2315|consen   94 WAIYGPKNASNPNVLVYNVETGV--QRSQIQKKM-----QNGWVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQH-KL  163 (566)
T ss_pred             cccccCCCCCCCceeeeeeccce--ehhheehhh-----hcCccccccc-chh-hhhhhhcceEEEEecCCccceee-ee
Confidence                     11 68899999853  333333322     2225788886 544 33334457899999876442221 23


Q ss_pred             cCCceeEEEecCC---cEEEE-----EeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC--C-
Q 040307          165 HDREVYDISWGGF---NVFAS-----VSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD--S-  233 (339)
Q Consensus       165 ~~~~v~~~~~~~~---~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--~-  233 (339)
                      |...|+.+.++++   ..+++     .+.-+.|+||..........+....--...=..+.|++-...+|+..+.|  . 
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            5678899999943   33332     34556899998873321111100000122345788987333344444333  2 


Q ss_pred             -------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307          234 -------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPGYRSGNGGPSGDVEPEL  305 (339)
Q Consensus       234 -------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  305 (339)
                             ..+++.++.. ......+. ..++|.++.|+|++..+.++- -.-..+.|||++..-              +.
T Consensus       244 n~SYYGEq~Lyll~t~g-~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------------v~  307 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQG-ESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------------VF  307 (566)
T ss_pred             CccccccceEEEEEecC-ceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------------eE
Confidence                   1388888772 33333333 378999999999995343333 356789999988743              33


Q ss_pred             eecccceeEEEEecCCCCceEEEec---CCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIAF---VNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~~---d~~v~~w~v  339 (339)
                      .+ ..++=+++-|+|.|++++.+|.   -|.+.|||+
T Consensus       308 df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  308 DF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             eC-CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            33 3456689999999998776664   477999986

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.32  E-value=1.4e-09  Score=83.38  Aligned_cols=220  Identities=13%  Similarity=0.053  Sum_probs=141.7

Q ss_pred             CeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      .+||.||.  .+.+|...+.+. .......+.     ..|+-+.=.-.....+..++.|.++++.+++-+......  |.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~-h~~~cd~sn-----n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~  156 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDG-HLYQCDVSN-----NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HN  156 (344)
T ss_pred             cEEEeccccceeeeecccCccc-ceeeecccc-----cchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ec
Confidence            57788763  999999987652 222222222     222111110012234666788889988888655332222  33


Q ss_pred             C--ceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          167 R--EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       167 ~--~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      .  .+.++.++ ++.++++.+....|..|.+....... .+...+. ...--+..|+. ....+|++..||. +.|||+|
T Consensus       157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-~D~gF~~S~s~-~~~~FAv~~Qdg~-~~I~DVR  233 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-SDHGFYNSFSE-NDLQFAVVFQDGT-CAIYDVR  233 (344)
T ss_pred             cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-CCCceeeeecc-CcceEEEEecCCc-EEEEEec
Confidence            3  37888999 78999999999999999987665322 2233322 23445778885 8889999999999 9999999


Q ss_pred             CCCCceEEE----ecCCCCeeEEEeccCCCC-eEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-----eeecccc-
Q 040307          243 FPTNPVVVL----SKHEGSVNGISWAPLYGR-RLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-----LCYQSMA-  311 (339)
Q Consensus       243 ~~~~~~~~~----~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-  311 (339)
                      ....|....    ..|.+.++.+.|+|-|.. +|+..-.-+.+.+.|+++...          .+.+     ....|.. 
T Consensus       234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~----------~q~I~i~~d~~~~~~tq  303 (344)
T KOG4532|consen  234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN----------HQVIVIPDDVERKHNTQ  303 (344)
T ss_pred             ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce----------eeEEecCcccccccccc
Confidence            877665433    358899999999987643 334444457899999999871          1111     2223333 


Q ss_pred             eeEEEEecCCCCceEEEe
Q 040307          312 EINVVRWSPLELDWIAIA  329 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~~~~  329 (339)
                      .|..-.|+.++..+....
T Consensus       304 ~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  304 HIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ccccccccCCCccccccc
Confidence            377777777766544433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=2.3e-11  Score=114.46  Aligned_cols=190  Identities=14%  Similarity=0.196  Sum_probs=149.2

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      +-..|.++.=+|..     .+.++|+ | .+++|....++  .+..++.-.   . ..|+.+.|+. .|+.+..+..||.
T Consensus      2207 ~v~~v~r~~sHp~~-----~~Yltgs~dgsv~~~~w~~~~--~v~~~rt~g---~-s~vtr~~f~~-qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-----PYYLTGSQDGSVRMFEWGHGQ--QVVCFRTAG---N-SRVTRSRFNH-QGNKFGIVDGDGD 2274 (2439)
T ss_pred             ccCceeeecCCCCC-----ceEEecCCCceEEEEeccCCC--eEEEeeccC---c-chhhhhhhcc-cCCceeeeccCCc
Confidence            34556777777877     6667776 5 99999998877  444444321   1 6889999995 9999999999999


Q ss_pred             EEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeC---CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          148 CVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSG---DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +.+|... .++....+.|.....++.|- +..+++++.   ++.+.+||.--......+...  |.+.++++++.| ..+
T Consensus      2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi-~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~--H~~gaT~l~~~P-~~q 2349 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFI-GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC--HDGGATVLAYAP-KHQ 2349 (2439)
T ss_pred             eeecccC-CcceeccccCCccccceeee-ehhhhccccCCCCCcccchhcccCcccceeeee--cCCCceEEEEcC-cce
Confidence            9999986 66777888899999999998 467777754   688999998766544444444  888999999999 889


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +|++|+.+|. |++||++. .+.++.++.         +. .. .++++|+..|.++||++....
T Consensus      2350 llisggr~G~-v~l~D~rq-rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2350 LLISGGRKGE-VCLFDIRQ-RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             EEEecCCcCc-EEEeehHH-HHHHHHhhh---------hh-hh-heeeccCcccceEEEEccccc
Confidence            9999999999 99999997 555544443         44 33 589999999999999998866

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=9.7e-10  Score=95.96  Aligned_cols=235  Identities=13%  Similarity=0.167  Sum_probs=168.5

Q ss_pred             CceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-----------CCCEEE
Q 040307           73 TPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-----------DTRRVA  140 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~l~  140 (339)
                      .-.++.|+|.|      ++|-|++ .|.+-|..+-+  .+..++.|+     ..|+.+.|.|.           ..-+||
T Consensus        17 N~~A~Dw~~~G------LiAygshslV~VVDs~s~q--~iqsie~h~-----s~V~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen   17 NRNAADWSPSG------LIAYGSHSLVSVVDSRSLQ--LIQSIELHQ-----SAVTSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             cccccccCccc------eEEEecCceEEEEehhhhh--hhhccccCc-----cceeEEEeccCCCchhccCccccceeEE
Confidence            36788999998      8898887 99999988776  888888888     89999999872           123678


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec---C-C-cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307          141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG---G-F-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~---~-~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  215 (339)
                      ++...|.|.+||...+..+..+..|.+++.+++|-   + . ..|++-.....+.+|+..+++.   +...........+
T Consensus        84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDYSHEILSC  160 (1062)
T ss_pred             eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccccCCcceee
Confidence            88889999999999988888888899999999997   2 3 6778888889999999999873   3333233456677


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCC---CceEEEe---cCCC-------------------------CeeEEEec
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPT---NPVVVLS---KHEG-------------------------SVNGISWA  264 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---~~~~~~~---~~~~-------------------------~v~~~~~~  264 (339)
                      +.+.|.+.+.+..-+..|. +.+-+.-...   .+.+.++   .|..                         ....++|+
T Consensus       161 f~~DPfd~rh~~~l~s~g~-vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGF-VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             eeeCCCCcceEEEEccCce-EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            9999988888888777776 6665543211   1222221   1111                         12246788


Q ss_pred             cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCC--CceEEEecCCeEEEEe
Q 040307          265 PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLE--LDWIAIAFVNKLQLLK  338 (339)
Q Consensus       265 p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~--~~l~~~~~d~~v~~w~  338 (339)
                      |.-. -++-......+.|+|++...             ++... -..+.+.-+.|-|+.  ..|++.-.||.+.+|.
T Consensus       240 p~~r-n~lfi~~prellv~dle~~~-------------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  240 PHWR-NILFITFPRELLVFDLEYEC-------------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             hhhh-ceEEEEeccceEEEcchhhc-------------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            8874 44444456789999999877             44222 223334445555654  4588899999999985

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.7e-10  Score=98.55  Aligned_cols=231  Identities=14%  Similarity=0.188  Sum_probs=162.0

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc-------------ceeEEEeecCCCccCCCCEEEEEEcC
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR-------------TELKSLLNSNKTSEFSSAITSFDWAG  133 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~~~~  133 (339)
                      +......|++|+...     .++|+|| + .+++..+.+..             ...-+++.+|.     ..|.-+.|+.
T Consensus        12 PnnvkL~c~~WNke~-----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-----~sV~vvTWNe   81 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKES-----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-----ASVMVVTWNE   81 (1189)
T ss_pred             CCCceEEEEEEcccC-----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-----ceEEEEEecc
Confidence            445668999999988     8999998 4 88888776542             11234566676     9999999996


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeeee--eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC
Q 040307          134 FDTRRVATCSVDTTCVIWDIDREILETQL--VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD  210 (339)
Q Consensus       134 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  210 (339)
                       +.+.|-++..+|.|.+|-+-.+.-...+  ...++.|.+++|+ +|..+...-.||.|.+=.+..++.-..-..    .
T Consensus        82 -~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g  156 (1189)
T KOG2041|consen   82 -NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----G  156 (1189)
T ss_pred             -ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----h
Confidence             7888999999999999999777532222  2345678999999 999999999999988877766553222222    2


Q ss_pred             CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC------ceEE----EecCCCCeeEEEec--------cCCCCeEE
Q 040307          211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN------PVVV----LSKHEGSVNGISWA--------PLYGRRLC  272 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~------~~~~----~~~~~~~v~~~~~~--------p~~~~~l~  272 (339)
                      .....+.|++ +.+.++.+-.+|. +++||......      +...    +......|..+.|.        |+-+ .|+
T Consensus       157 ~~l~hv~ws~-D~~~~Lf~~ange-~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~la  233 (1189)
T KOG2041|consen  157 QLLAHVLWSE-DLEQALFKKANGE-THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLA  233 (1189)
T ss_pred             heccceeecc-cHHHHHhhhcCCc-EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEE
Confidence            3456789998 7777777777777 99999764211      1011    11112235566664        4665 899


Q ss_pred             EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          273 SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       273 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      .+-.+|.+.|-.-.+..            +|.... ..-.|..+.|+++|..|+.++.
T Consensus       234 vcy~nGr~QiMR~eND~------------~Pvv~d-tgm~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  234 VCYANGRMQIMRSENDP------------EPVVVD-TGMKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             EEEcCceehhhhhcCCC------------CCeEEe-cccEeecceecCCCcEEEEccC
Confidence            99999999987666655            354443 3367899999999986555553

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=5.5e-11  Score=112.07  Aligned_cols=185  Identities=14%  Similarity=0.196  Sum_probs=141.6

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..|.++.-+| ...+.++|+.||.|++|.-..+..+..+. .-...|+.+.|+ .|+.+..+..||.+.+|.... + +.
T Consensus      2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k-~~ 2285 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-K-PY 2285 (2439)
T ss_pred             CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-c-ce
Confidence            5677788887 67889999999999999988887666663 233789999999 899999999999999999882 2 22


Q ss_pred             eEEeCCCCCCCeEEEEEecCCCCeEEEEee--CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307          202 IIYENPVQDCPLLRLEWNKADPRFMATVGM--DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR  279 (339)
Q Consensus       202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  279 (339)
                      .-.  ..|......+.|-.   ..+++++.  |++.+.+||.-.+...-.....|.+.++++++-|.. .+|++|+.+|.
T Consensus      2286 ~s~--qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~ 2359 (2439)
T KOG1064|consen 2286 TSW--QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGE 2359 (2439)
T ss_pred             ecc--ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCc
Confidence            223  33777788888863   56666532  333499999876554444448899999999999998 69999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          280 ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       280 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |++||++..+             ....+    +.    ++ ...++++++..|.++||++
T Consensus      2360 v~l~D~rqrq-------------l~h~~----~~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2360 VCLFDIRQRQ-------------LRHTF----QA----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             EEEeehHHHH-------------HHHHh----hh----hh-hhheeeccCcccceEEEEc
Confidence            9999999876             22111    11    55 5567888999999999985

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.26  E-value=1.1e-08  Score=84.74  Aligned_cols=275  Identities=13%  Similarity=0.122  Sum_probs=169.7

Q ss_pred             cccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C--cEEEEeecCCc
Q 040307           31 RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D--SLRLWEIHDDR  107 (339)
Q Consensus        31 ~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~--~i~iw~~~~~~  107 (339)
                      +|+++|..+     .|+..|  .+...+-..+     .++...|.-..+..+.     .-++.|. |  .+-|++.++++
T Consensus       331 ~Gd~ia~VS-----RGkaFi--~~~~~~~~iq-----v~~~~~VrY~r~~~~~-----e~~vigt~dgD~l~iyd~~~~e  393 (668)
T COG4946         331 NGDYIALVS-----RGKAFI--MRPWDGYSIQ-----VGKKGGVRYRRIQVDP-----EGDVIGTNDGDKLGIYDKDGGE  393 (668)
T ss_pred             CCcEEEEEe-----cCcEEE--ECCCCCeeEE-----cCCCCceEEEEEccCC-----cceEEeccCCceEEEEecCCce
Confidence            488999988     688888  5554444433     6888889999998887     4555554 2  99999999885


Q ss_pred             ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC
Q 040307          108 TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD  186 (339)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  186 (339)
                         ...+...-     +.|.++..+| +++.++.+.....+.+.|+.++.....-+...+-|+.+.|+ ++.++|-+--+
T Consensus       394 ---~kr~e~~l-----g~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~  464 (668)
T COG4946         394 ---VKRIEKDL-----GNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE  464 (668)
T ss_pred             ---EEEeeCCc-----cceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence               33444444     7899999998 99999999999999999999998655545667789999999 68888876555


Q ss_pred             ----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-------CCeEEEEecCCCCCceE------
Q 040307          187 ----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-------SNKVVVLDIRFPTNPVV------  249 (339)
Q Consensus       187 ----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------~~~i~i~d~~~~~~~~~------  249 (339)
                          ..|+++|+..++......+    ...=.+-+|.| ++++|..-+..       .. +.-+....-.+|..      
T Consensus       465 gy~tq~Iklydm~~~Kiy~vTT~----ta~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv-~fnf~f~~vskPylv~L~~g  538 (668)
T COG4946         465 GYYTQSIKLYDMDGGKIYDVTTP----TAYDFSPAFDP-DGRYLYFLSARSLDPSNDRV-IFNFSFQRVSKPYLVVLGRG  538 (668)
T ss_pred             ceeeeeEEEEecCCCeEEEecCC----cccccCcccCC-CCcEEEEEeccccCCCCCee-EEEEEEeeeccceEEEecCC
Confidence                4699999998774333222    22334567887 77766544322       11 11111111111110      


Q ss_pred             ----------EEecC---------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC--CCCCC-Ccccc----
Q 040307          250 ----------VLSKH---------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG--NGGPS-GDVEP----  303 (339)
Q Consensus       250 ----------~~~~~---------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~-~~~~~----  303 (339)
                                .....         ...+.-+-..+ +....+++-.+|.|.++...-......  .+.+. +.++.    
T Consensus       539 ~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydle  617 (668)
T COG4946         539 YYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLE  617 (668)
T ss_pred             CCChhhcCchhcCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecc
Confidence                      00000         01111111112 223455666677777776654331000  00000 00000    


Q ss_pred             -eeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          304 -ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       304 -~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                       .....-...+.++..|+|+..++. -.|+.+++++|
T Consensus       618 tkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~v  653 (668)
T COG4946         618 TKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDV  653 (668)
T ss_pred             hhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEec
Confidence             001122457899999999987766 89999999985

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.25  E-value=8.6e-09  Score=79.19  Aligned_cols=224  Identities=15%  Similarity=0.113  Sum_probs=140.1

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCccee
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTEL  110 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~  110 (339)
                      ..+||.|+    ..|...+|...........    ...|...|.-+.=..+.+   ..++++..| ++++.+++.+....
T Consensus        84 c~~la~gG----~~g~fd~~~~~tn~~h~~~----cd~snn~v~~~~r~cd~~---~~~~i~sndht~k~~~~~~~s~~~  152 (344)
T KOG4532|consen   84 CVTLADGG----ASGQFDLFACNTNDGHLYQ----CDVSNNDVTLVKRYCDLK---FPLNIASNDHTGKTMVVSGDSNKF  152 (344)
T ss_pred             ccEEEecc----ccceeeeecccCcccceee----ecccccchhhhhhhcccc---cceeeccCCcceeEEEEecCcccc
Confidence            56888887    7999999777654443332    133444333222111211   045566666 99999888764222


Q ss_pred             EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe--eee-eeeccCCceeEEEec-CCcEEEEEeCC
Q 040307          111 KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--LET-QLVAHDREVYDISWG-GFNVFASVSGD  186 (339)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d  186 (339)
                      ......       -.+.++.+++ +++++++.+....|..|.+....  .+. .....++.-.+..|+ ....+|++..|
T Consensus       153 ~~h~~~-------~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd  224 (344)
T KOG4532|consen  153 AVHNQN-------LTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD  224 (344)
T ss_pred             eeeccc-------cceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence            111111       2378899998 99999999999999999986542  222 222334455788899 78899999999


Q ss_pred             CcEEEEECCCCcceeeE--EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE------ecCCC-C
Q 040307          187 CSVRVFDLRDKERSTII--YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL------SKHEG-S  257 (339)
Q Consensus       187 ~~i~i~d~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~------~~~~~-~  257 (339)
                      |++.|||+|....+...  ...+.|.+.++.+.|+|...--|+.-++.-..+.+.|+|........+      ..|.. .
T Consensus       225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~  304 (344)
T KOG4532|consen  225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQH  304 (344)
T ss_pred             CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccc
Confidence            99999999987644332  334568899999999983333333333333349999999854322211      12222 3


Q ss_pred             eeEEEeccCCCCeEEEEe
Q 040307          258 VNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~  275 (339)
                      |..-.|+.+++ -+.+.+
T Consensus       305 ifgt~f~~~n~-s~~v~~  321 (344)
T KOG4532|consen  305 IFGTNFNNENE-SNDVKN  321 (344)
T ss_pred             cccccccCCCc-cccccc
Confidence            66667777664 343433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.25  E-value=1.6e-10  Score=93.22  Aligned_cols=161  Identities=17%  Similarity=0.186  Sum_probs=116.3

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE--eCC
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT--SGD   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~--~~~   96 (339)
                      .+..+..+|.   +++||++.    .+....++++.........  .....-....+++.|..+..    ..+++  .+|
T Consensus        64 a~~~~~~s~~---~~llAv~~----~~K~~~~f~~~~~~~~~kl--~~~~~v~~~~~ai~~~~~~~----sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDS---GRLVAVAT----SSKQRAVFDYRENPKGAKL--LDVSCVPKRPTAISFIREDT----SVLVADKAGD  130 (390)
T ss_pred             cccccccCCC---ceEEEEEe----CCCceEEEEEecCCCccee--eeEeecccCcceeeeeeccc----eEEEEeecCC
Confidence            4455567777   99999999    5777777777655432222  11233445556666666553    33333  234


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEEE
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDIS  173 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~  173 (339)
                        .+.+|....+   +...+-+|-     +.+++++|+| |+++|+++..|..|++-.....-.+..+ -+|+.-|..++
T Consensus       131 ~~~~di~s~~~~---~~~~~lGhv-----Sml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  131 VYSFDILSADSG---RCEPILGHV-----SMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             ceeeeeeccccc---Ccchhhhhh-----hhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence              7777777654   333445666     8999999998 9999999999999999877665555554 47999999999


Q ss_pred             ecCCcEEEEEeCCCcEEEEECCCCccee
Q 040307          174 WGGFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      .-++..|++++.|++|++||+++++.+.
T Consensus       202 l~~~~~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  202 LTDNYLLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             eccCceeeecCCCCcEEEEecccCCccc
Confidence            9888889999999999999999998653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.24  E-value=3.7e-08  Score=94.32  Aligned_cols=254  Identities=9%  Similarity=0.081  Sum_probs=148.0

Q ss_pred             eEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCc---------cCCCCEEEEEEcCCCCCEEEEEe
Q 040307           75 TNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTS---------EFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        75 ~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                      ..+++++.+.    .++++-.+  .|+++|....   ....+.+....         ........+++++ +++.|+.+.
T Consensus       571 ~gvavd~~~g----~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaD  642 (1057)
T PLN02919        571 GKLAIDLLNN----RLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVAD  642 (1057)
T ss_pred             ceEEEECCCC----eEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEe
Confidence            4678887542    56666553  8999998654   22222221100         0112356889987 666555544


Q ss_pred             -CCCeEEEEECCCCeeeeeeecc-----------------CCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeE
Q 040307          144 -VDTTCVIWDIDREILETQLVAH-----------------DREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTII  203 (339)
Q Consensus       144 -~d~~v~i~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~  203 (339)
                       ..+.|+++|+.++. +.++.+-                 -.....+++++  +.++++.+.++.|++||..++......
T Consensus       643 t~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~  721 (1057)
T PLN02919        643 TENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS  721 (1057)
T ss_pred             CCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence             45789999987764 3333110                 11235788883  566777778899999998776532111


Q ss_pred             EeC-----C------CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE------------EEecC------
Q 040307          204 YEN-----P------VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV------------VLSKH------  254 (339)
Q Consensus       204 ~~~-----~------~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~------------~~~~~------  254 (339)
                      ...     .      ..-.....++++| +++.|+++..+...|++||+......+.            .+...      
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            000     0      0012456799998 6665554444433499999876331110            00000      


Q ss_pred             --CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC-CCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307          255 --EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG-GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       255 --~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                        -....+++++++| .++++-..+++|++||..........+ +..+...-......-.....++++++|+.+++-+.+
T Consensus       801 ~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        801 VLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             hhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence              1124689999999 588888899999999987755100000 000000000011122357789999999877777899


Q ss_pred             CeEEEEeC
Q 040307          332 NKLQLLKV  339 (339)
Q Consensus       332 ~~v~~w~v  339 (339)
                      +.|++|++
T Consensus       880 n~Irvid~  887 (1057)
T PLN02919        880 SLIRYLDL  887 (1057)
T ss_pred             CEEEEEEC
Confidence            99999975

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.23  E-value=6.2e-08  Score=75.51  Aligned_cols=229  Identities=11%  Similarity=0.056  Sum_probs=131.7

Q ss_pred             EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307           76 NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID  154 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~  154 (339)
                      .++.+++|     ++||.--| .|.|-..+++=...+......+  .....=+.++|+| |+.+||.+...|+|+++|+.
T Consensus         2 ~~~~~~~G-----k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpk--D~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~   73 (282)
T PF15492_consen    2 HLALSSDG-----KLLAILQDQCIEIRSAKDDFSSIIGKCQVPK--DPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLM   73 (282)
T ss_pred             ceeecCCC-----cEEEEEeccEEEEEeccCCchheeEEEecCC--CCCchheEEEECC-CCcEEEEEcCCCeEEEEecc
Confidence            35677888     89999988 6666665554222222222221  1114567899998 99999999999999999996


Q ss_pred             CCeeeeeeec-------cCCceeEEEecC-------CcEEEEEeCCCcEEEEECCCC--c---ceeeEEeCCCCCCCeEE
Q 040307          155 REILETQLVA-------HDREVYDISWGG-------FNVFASVSGDCSVRVFDLRDK--E---RSTIIYENPVQDCPLLR  215 (339)
Q Consensus       155 ~~~~~~~~~~-------~~~~v~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~--~---~~~~~~~~~~~~~~v~~  215 (339)
                      ..+ +..+..       -...|..+.|.+       ...|++-..+|.++-|-+..+  +   ....+.-.......|.+
T Consensus        74 g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~  152 (282)
T PF15492_consen   74 GSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS  152 (282)
T ss_pred             cce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence            533 333321       124566677762       235666777888887765321  1   22222233345678999


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeE-EEEeCCC------cEEEEEecCC
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRL-CSVADDS------RALIWEVVGP  288 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg------~v~iwd~~~~  288 (339)
                      +.++| .-++|++|+.....-..+            .+....+++-..-.+.+.+. ++..+|+      +..+|.+-+.
T Consensus       153 ~vy~p-~h~LLlVgG~~~~~~~~s------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~  219 (282)
T PF15492_consen  153 AVYHP-KHRLLLVGGCEQNQDGMS------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF  219 (282)
T ss_pred             EEEcC-CCCEEEEeccCCCCCccc------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence            99998 667777776554300000            01111222222222222121 1222221      1123332222


Q ss_pred             CCCCCCCCCCCccccee-eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          289 GYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .             ... .......|..|..||||..|++...+|.|.+|+|
T Consensus       220 ~-------------~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  220 K-------------FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             e-------------eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence            1             111 1234667999999999998888999999999985

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.22  E-value=1.2e-08  Score=85.19  Aligned_cols=236  Identities=12%  Similarity=0.173  Sum_probs=156.8

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---  145 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---  145 (339)
                      -.-++..+.|||.|     .+|++..- .|.+|.-....  .+..+..       ..|..+.|+| ++++|.+=+..   
T Consensus        31 ~~~p~~~~~~SP~G-----~~l~~~~~~~V~~~~g~~~~--~l~~~~~-------~~V~~~~fSP-~~kYL~tw~~~pi~   95 (561)
T COG5354          31 ENWPVAYVSESPLG-----TYLFSEHAAGVECWGGPSKA--KLVRFRH-------PDVKYLDFSP-NEKYLVTWSREPII   95 (561)
T ss_pred             cCcchhheeecCcc-----hheehhhccceEEccccchh--heeeeec-------CCceecccCc-ccceeeeeccCCcc
Confidence            56688999999999     89888876 99999987765  4455544       5799999999 99999985543   


Q ss_pred             ------------CeEEEEECCCCeeeeeeeccCCc--ee-EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC
Q 040307          146 ------------TTCVIWDIDREILETQLVAHDRE--VY-DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ  209 (339)
Q Consensus       146 ------------~~v~i~d~~~~~~~~~~~~~~~~--v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  209 (339)
                                  ..+.+||+.++..+..+.....+  .+ -+.|+ +++++|-. ....++++++...-....+...  .
T Consensus        96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l--r  172 (561)
T COG5354          96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL--R  172 (561)
T ss_pred             ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc--c
Confidence                        35999999999988888655544  44 67888 66666655 3457999997332211111111  2


Q ss_pred             CCCeEEEEEecC-CCCeEEEE-----eeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe--------
Q 040307          210 DCPLLRLEWNKA-DPRFMATV-----GMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA--------  275 (339)
Q Consensus       210 ~~~v~~~~~~p~-~~~~l~~~-----~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--------  275 (339)
                      ...+....|+|. ++..|+.-     +.... +++|.+.. ...+.+..-.+..-..+.|++.|..+|+-.-        
T Consensus       173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~-~~i~sIp~-~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs  250 (561)
T COG5354         173 PVGILDFSISPEGNHDELAYWTPEKLNKPAM-VRILSIPK-NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS  250 (561)
T ss_pred             ccceeeEEecCCCCCceEEEEccccCCCCcE-EEEEEccC-CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence            256788899984 33344442     33444 89998875 4445444433344457889999853333211        


Q ss_pred             --CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe--cCCeEEEEe
Q 040307          276 --DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA--FVNKLQLLK  338 (339)
Q Consensus       276 --~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~--~d~~v~~w~  338 (339)
                        .+..++|++++...             ........++|.+++|.|.+..++..+  .+..+.+++
T Consensus       251 yfgesnLyl~~~~e~~-------------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         251 YFGESNLYLLRITERS-------------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             eeccceEEEEeecccc-------------cceeccccccceeeeecccCCceeEEecccccceeecc
Confidence              23578888888555             222225678999999999988766543  445555544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=1.4e-08  Score=87.59  Aligned_cols=211  Identities=10%  Similarity=0.076  Sum_probs=122.8

Q ss_pred             CCeeEEEeeecCCcccE-EEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           18 WPISTVAWSVRHDRKSR-LAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~-la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      .......|+|+   ++. ++..++.+ ....|.+  ++..+++...   + ....+......|+||++    .++.+.+ 
T Consensus       188 ~~~~~p~wSpD---G~~~i~y~s~~~-~~~~Iyv--~dl~tg~~~~---l-t~~~g~~~~~~~SPDG~----~la~~~~~  253 (419)
T PRK04043        188 GLNIFPKWANK---EQTAFYYTSYGE-RKPTLYK--YNLYTGKKEK---I-ASSQGMLVVSDVSKDGS----KLLLTMAP  253 (419)
T ss_pred             CCeEeEEECCC---CCcEEEEEEccC-CCCEEEE--EECCCCcEEE---E-ecCCCcEEeeEECCCCC----EEEEEEcc
Confidence            46778999999   884 77666311 1234555  5555555443   1 23455566788999994    3444443 


Q ss_pred             --C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccCCce
Q 040307           96 --D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHDREV  169 (339)
Q Consensus        96 --~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~v  169 (339)
                        + .|.++++.+++.+.   +..+.     .......|+| |++.|+..+. .+  .|.+.|+.+++..+... .... 
T Consensus       254 ~g~~~Iy~~dl~~g~~~~---LT~~~-----~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~-  322 (419)
T PRK04043        254 KGQPDIYLYDTNTKTLTQ---ITNYP-----GIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN-  322 (419)
T ss_pred             CCCcEEEEEECCCCcEEE---cccCC-----CccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc-
Confidence              2 78888887775322   22222     2223457998 8887777654 23  68888888776533332 1111 


Q ss_pred             eEEEec-CCcEEEEEeCC---------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEE
Q 040307          170 YDISWG-GFNVFASVSGD---------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVV  237 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~  237 (339)
                       ...|+ +++.|+..+..         ..|.+.|+.++..... ...    .......|+| +|+.|+..+..+.  .+.
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L-T~~----~~~~~p~~SP-DG~~I~f~~~~~~~~~L~  395 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL-TAN----GVNQFPRFSS-DGGSIMFIKYLGNQSALG  395 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC-CCC----CCcCCeEECC-CCCEEEEEEccCCcEEEE
Confidence             24889 78877766654         3678888887763322 222    1233588999 7887766655544  255


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEE
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGIS  262 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~  262 (339)
                      +.++.  +.....+....+.+...+
T Consensus       396 ~~~l~--g~~~~~l~~~~g~~~~p~  418 (419)
T PRK04043        396 IIRLN--YNKSFLFPLKVGKIQSID  418 (419)
T ss_pred             EEecC--CCeeEEeecCCCccCCCC
Confidence            55554  333344444444444433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.22  E-value=3.9e-10  Score=86.00  Aligned_cols=198  Identities=14%  Similarity=0.080  Sum_probs=125.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec-CCcEEEEEe-----CCCcEEEEECCCCcceeeEEeCC
Q 040307          135 DTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG-GFNVFASVS-----GDCSVRVFDLRDKERSTIIYENP  207 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~  207 (339)
                      .++.++++..||.+.+++.+.-. ....+......-.+.++. .++.+.++.     .-+..+.|+++..+.......  
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--  177 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--  177 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--
Confidence            56789999999999999976521 111111111111222333 344444432     124566777776553222222  


Q ss_pred             CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          208 VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       208 ~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                       ....|.+++-+|...+++++|+.+|. +-+||++....|...+..|+.+++.+-|+|..+..|+++++||.+.-||..+
T Consensus       178 -~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  178 -ALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -ccccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             22348999999977778888888888 9999999988888889999999999999998888999999999999999884


Q ss_pred             CCC--CCCCC--CCCCcccce----ee----ecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          288 PGY--RSGNG--GPSGDVEPE----LC----YQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       288 ~~~--~~~~~--~~~~~~~~~----~~----~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...  .+...  .+.-...|.    .+    ..-...|+++..  -|+.+++++.-+.|++++
T Consensus       256 ~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  256 TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ceEEecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence            321  00000  000000011    00    011234555554  456789998888888875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=7.4e-08  Score=92.28  Aligned_cols=247  Identities=12%  Similarity=0.097  Sum_probs=150.5

Q ss_pred             eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee----------EeecCCCCceEEEEcCCCCCCCCCe
Q 040307           21 STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR----------LIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        21 ~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~----------~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      ..+++++.  ++.++++-.    .++.|++++.+  +........          +....-.....+++.+++     ..
T Consensus       571 ~gvavd~~--~g~lyVaDs----~n~rI~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-----n~  637 (1057)
T PLN02919        571 GKLAIDLL--NNRLFISDS----NHNRIVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-----NL  637 (1057)
T ss_pred             ceEEEECC--CCeEEEEEC----CCCeEEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-----CE
Confidence            46788876  144444444    57889996643  322211000          000112246889999987     54


Q ss_pred             -EEEeC-C-cEEEEeecCCcceeEEEeecCCCc------------cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 040307           91 -VATSG-D-SLRLWEIHDDRTELKSLLNSNKTS------------EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR  155 (339)
Q Consensus        91 -la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~  155 (339)
                       +++-. + .|+++|+.++.   +.++.+....            .....-..++++|.++.++++.+.++.|++||..+
T Consensus       638 LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~  714 (1057)
T PLN02919        638 LYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD  714 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence             44433 3 89999987764   3333221000            00023357999985566777777889999999877


Q ss_pred             Ceeeeeeecc---------------CCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEE----------eCCC
Q 040307          156 EILETQLVAH---------------DREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIY----------ENPV  208 (339)
Q Consensus       156 ~~~~~~~~~~---------------~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~  208 (339)
                      +... .+.+.               -.....|+++ +++ ++++-+.++.|++||+.++.......          ....
T Consensus       715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~  793 (1057)
T PLN02919        715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD  793 (1057)
T ss_pred             CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence            6532 22111               1234578898 555 56666677999999998765321110          0000


Q ss_pred             --------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC--------------CCCeeEEEeccC
Q 040307          209 --------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--------------EGSVNGISWAPL  266 (339)
Q Consensus       209 --------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--------------~~~v~~~~~~p~  266 (339)
                              .-.....++++| +|+++++-..++. |++||... .. +..+.+.              -.....++++++
T Consensus       794 ~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~r-IrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d  869 (1057)
T PLN02919        794 HDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHK-IKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN  869 (1057)
T ss_pred             CCCchhhhhccCCceeeEeC-CCcEEEEECCCCE-EEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence                    011346889997 7887777777777 99999875 22 2333221              125678999999


Q ss_pred             CCCeEEEEeCCCcEEEEEecCCC
Q 040307          267 YGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       267 ~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      | +++++-+.++.|++||+.+..
T Consensus       870 G-~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        870 G-RLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             C-CEEEEECCCCEEEEEECCCCc
Confidence            9 588888899999999998764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.18  E-value=1.7e-09  Score=96.12  Aligned_cols=179  Identities=15%  Similarity=0.166  Sum_probs=134.4

Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      ..++-|+ . .+..+|+++.+  ..+...-..     +.|+-|+.   +++++.+|...|+|.+-|.++.+.+.++.+|+
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~--e~r~~~v~a-----~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEK--ETRTTNVSA-----SGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             cceeecchhhheeeeecccce--eeeeeeccC-----CceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            4455555 2 78888888775  333333222     34666665   67899999999999999999999999999999


Q ss_pred             CceeEEEecCCcEEEEEeC---------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307          167 REVYDISWGGFNVFASVSG---------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV  237 (339)
Q Consensus       167 ~~v~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~  237 (339)
                      +.|.++... |++|+++|.         |.-|++||+|..+....+...    ....-+.|+|.-...+++++..|. ..
T Consensus       218 ~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----~~P~flrf~Psl~t~~~V~S~sGq-~q  291 (1118)
T KOG1275|consen  218 GSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----YGPQFLRFHPSLTTRLAVTSQSGQ-FQ  291 (1118)
T ss_pred             cceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----cCchhhhhcccccceEEEEecccc-ee
Confidence            999887766 889999886         556899999998755544332    223567889877788889899998 99


Q ss_pred             EEecCCCCCc---eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          238 VLDIRFPTNP---VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       238 i~d~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      +-|......|   +..+......+.++.+++++ ..|+.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence            9994443333   33333334569999999999 5999999999999998

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=2.7e-10  Score=95.85  Aligned_cols=289  Identities=14%  Similarity=0.146  Sum_probs=179.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc---ceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS---ADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      |...|.+++--.+   .+.+++++    .|.+|++|.+..+..+..   ..-++ ..|..+|..+.|..+.     +.++
T Consensus       734 H~~~iRai~AidN---ENSFiSAS----kDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~l-----r~i~  800 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDN---ENSFISAS----KDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADL-----RSIA  800 (1034)
T ss_pred             cHHHhHHHHhccc---ccceeecc----CCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeecc-----ceee
Confidence            5667777766556   77788888    799999999987765544   22233 5899999999999998     8999


Q ss_pred             EeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeeeee-----ccC
Q 040307           93 TSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDIDREILETQLV-----AHD  166 (339)
Q Consensus        93 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~-----~~~  166 (339)
                      ++.+.|.+||.--+.  ++........++....|.++.--  +...+ +-++...+|+++|.+..+-...++     +..
T Consensus       801 ScD~giHlWDPFigr--~Laq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  801 SCDGGIHLWDPFIGR--LLAQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             eccCcceeecccccc--hhHhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence            888899999976665  33322222111122344444321  33444 444788999999999887554443     334


Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE-EecCCC
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV-LDIRFP  244 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i-~d~~~~  244 (339)
                      ..+.+++.. .|++++.+-..|.|.+.|.|+++.......   .+.....++- | ..+.|+....|.. +.+ |-.-. 
T Consensus       877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp---mecdllqlaa-p-sdq~L~~saldHs-laVnWhald-  949 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP---MECDLLQLAA-P-SDQALAQSALDHS-LAVNWHALD-  949 (1034)
T ss_pred             hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc---ccchhhhhcC-c-hhHHHHhhcccce-eEeeehhcC-
Confidence            568889888 699999999999999999999874332211   1222223332 3 5566766666766 776 75433 


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      +....+.+....+..  -...-|+ -|++....+.+.+|.-.....      .......+......+..++++--|-...
T Consensus       950 gimh~q~kpppepah--flqsvgp-SLV~a~~Gn~lgVYad~a~~h------a~stitKiR~d~f~G~lTala~LPLN~a 1020 (1034)
T KOG4190|consen  950 GIMHLQDKPPPEPAH--FLQSVGP-SLVTAQNGNILGVYADSAELH------AESTITKIRPDEFPGTLTALAPLPLNCA 1020 (1034)
T ss_pred             CeeeeccCCCCcchh--hhhccCc-eeEEeccCcEEEEEecchhhh------hhhhhccccccccCCccceeeeccccch
Confidence            211111111111110  1112343 677777777888884332220      0000111122234667888998898877


Q ss_pred             eEEEecCCeEEEE
Q 040307          325 WIAIAFVNKLQLL  337 (339)
Q Consensus       325 l~~~~~d~~v~~w  337 (339)
                      ++++...|.|++.
T Consensus      1021 fLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 1021 FLAGNEHGAIALL 1033 (1034)
T ss_pred             hhccCCCCceeec
Confidence            8889888888763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.16  E-value=8.6e-10  Score=84.14  Aligned_cols=145  Identities=16%  Similarity=0.195  Sum_probs=98.8

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-------CcEEEEeec
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-------DSLRLWEIH  104 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-------~~i~iw~~~  104 (339)
                      +..++++.    .||.+.+++.+.   .+.........|.+ -.+.+....+     .++.+++       |..++|+++
T Consensus       101 ~t~V~~~~----~dg~~~v~s~~~---~~~~~~~i~~~~~~-~as~~~~~~~-----~~i~s~~~g~~n~~d~~~a~~~~  167 (319)
T KOG4714|consen  101 DNRVCIGY----ADGSLAVFSTDK---DLALMSRIPSIHSG-SASRKICRHG-----NSILSGGCGNWNAQDNFYANTLD  167 (319)
T ss_pred             CCceEecC----CCceEEEEechH---HHhhhhhccccccc-ccccceeecc-----cEEecCCcceEeeccceeeeccc
Confidence            56788888    799999965443   11111111112221 2233344445     4555543       267777776


Q ss_pred             CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec--CCcEEE
Q 040307          105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG--GFNVFA  181 (339)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~~l~  181 (339)
                      ..+.........       ..|.+++-+|...+++++|+.||.+.+||.+... +...+..|+.+++.+-|+  ++..|+
T Consensus       168 p~~t~~~~~~~~-------~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  168 PIKTLIPSKKAL-------DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             cccccccccccc-------ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence            544222222222       4599999999778889999999999999998775 344567899999999999  588999


Q ss_pred             EEeCCCcEEEEECCC
Q 040307          182 SVSGDCSVRVFDLRD  196 (339)
Q Consensus       182 ~~~~d~~i~i~d~~~  196 (339)
                      +++.||.+.-||..+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            999999999999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.15  E-value=1.1e-06  Score=73.19  Aligned_cols=255  Identities=9%  Similarity=0.027  Sum_probs=141.9

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec------CCCCc
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD------HPYTP   74 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~v   74 (339)
                      +.+.+.+........-+ +|||   ++.|.++..      .+..++.|.+||.  .+.+...  .+..+      .....
T Consensus        36 ~~~v~g~i~~G~~P~~~-~spD---g~~lyva~~~~~R~~~G~~~d~V~v~D~--~t~~~~~--~i~~p~~p~~~~~~~~  107 (352)
T TIGR02658        36 AGRVLGMTDGGFLPNPV-VASD---GSFFAHASTVYSRIARGKRTDYVEVIDP--QTHLPIA--DIELPEGPRFLVGTYP  107 (352)
T ss_pred             CCEEEEEEEccCCCcee-ECCC---CCEEEEEeccccccccCCCCCEEEEEEC--ccCcEEe--EEccCCCchhhccCcc
Confidence            35555666655555555 9999   888877762      2334789999554  4444443  22111      12234


Q ss_pred             eEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Q 040307           75 TNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI  150 (339)
Q Consensus        75 ~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i  150 (339)
                      ..++++|++     ++|....   + .|.+.|+.+++  .+..+...      ....-...+  +....+ -+.||....
T Consensus       108 ~~~~ls~dg-----k~l~V~n~~p~~~V~VvD~~~~k--vv~ei~vp------~~~~vy~t~--e~~~~~-~~~Dg~~~~  171 (352)
T TIGR02658       108 WMTSLTPDN-----KTLLFYQFSPSPAVGVVDLEGKA--FVRMMDVP------DCYHIFPTA--NDTFFM-HCRDGSLAK  171 (352)
T ss_pred             ceEEECCCC-----CEEEEecCCCCCEEEEEECCCCc--EEEEEeCC------CCcEEEEec--CCccEE-EeecCceEE
Confidence            588999999     6666554   3 99999999987  55544431      111222222  222222 223454444


Q ss_pred             EECCC-Cee-eeeee-ccC--CceeE-EEec--CCcEEEEEeCCCcEEEEECCCCccee----eEEeCC-----CCCCCe
Q 040307          151 WDIDR-EIL-ETQLV-AHD--REVYD-ISWG--GFNVFASVSGDCSVRVFDLRDKERST----IIYENP-----VQDCPL  213 (339)
Q Consensus       151 ~d~~~-~~~-~~~~~-~~~--~~v~~-~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~-----~~~~~v  213 (339)
                      ..+.+ ++. ..... .+.  .++.. -.|.  ++.++..... |.|.+.|+.......    ......     -..+..
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            33322 211 11100 011  01000 0223  4555555544 999999975543111    111110     012334


Q ss_pred             EEEEEecCCCCeEEEEe-e--------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEE
Q 040307          214 LRLEWNKADPRFMATVG-M--------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIW  283 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~-~--------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iw  283 (339)
                      .-++++| +++.+++.. .        .++.|.++|..+ .+.+..+.. ...+..++++||+..+|++.. .++.|.++
T Consensus       251 q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsVi  327 (352)
T TIGR02658       251 QQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIF  327 (352)
T ss_pred             eeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence            4599998 666666532 1        113599999987 566666664 568999999999941555554 67889999


Q ss_pred             EecCCC
Q 040307          284 EVVGPG  289 (339)
Q Consensus       284 d~~~~~  289 (339)
                      |..+.+
T Consensus       328 D~~t~k  333 (352)
T TIGR02658       328 DAETGK  333 (352)
T ss_pred             ECcCCe
Confidence            998877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.14  E-value=2.8e-07  Score=71.95  Aligned_cols=236  Identities=11%  Similarity=0.131  Sum_probs=129.3

Q ss_pred             EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEE
Q 040307           23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRL  100 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~i  100 (339)
                      ++.+++   |++||+-.     |..|.|=.-..+-..+...-.........-..++||||+     .+||.+..  +|++
T Consensus         3 ~~~~~~---Gk~lAi~q-----d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-----tlLa~a~S~G~i~v   69 (282)
T PF15492_consen    3 LALSSD---GKLLAILQ-----DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-----TLLAYAESTGTIRV   69 (282)
T ss_pred             eeecCC---CcEEEEEe-----ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-----cEEEEEcCCCeEEE
Confidence            456677   99999987     888888322222222211111112223345789999999     89998864  9999


Q ss_pred             EeecCCcceeEEEeec-C-CCccCCCCEEEEEEcCCC-----CCEEEEEeCCCeEEEEECCCC-----eeeeeee---cc
Q 040307          101 WEIHDDRTELKSLLNS-N-KTSEFSSAITSFDWAGFD-----TRRVATCSVDTTCVIWDIDRE-----ILETQLV---AH  165 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~-----~~~l~~~~~d~~v~i~d~~~~-----~~~~~~~---~~  165 (339)
                      +|+...+  .. .+.. + .......+|.+|.|.+..     ...|++-...|.++-|-+..+     +....+.   .+
T Consensus        70 fdl~g~~--lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y  146 (282)
T PF15492_consen   70 FDLMGSE--LF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY  146 (282)
T ss_pred             Eecccce--eE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC
Confidence            9998754  21 2221 1 111223678888886532     235666677888887765322     2222322   24


Q ss_pred             CCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC------eEEE
Q 040307          166 DREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN------KVVV  238 (339)
Q Consensus       166 ~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~------~i~i  238 (339)
                      ...|.++.|++ .++|+.|+....      ..+.  ..   .  ....+++-..-.....+..+...+..      ...+
T Consensus       147 p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~---a--~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~  213 (282)
T PF15492_consen  147 PHGINSAVYHPKHRLLLVGGCEQN------QDGM--SK---A--SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGL  213 (282)
T ss_pred             CCceeEEEEcCCCCEEEEeccCCC------CCcc--cc---c--cccCceEEEEcCCCCcEEEccccCccccccccccce
Confidence            66899999994 567776665432      0000  00   0  01122221111111122211111111      0123


Q ss_pred             EecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       239 ~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |.+-. .............|..|..||+| .+||+...+|.|.+|++....
T Consensus       214 ~~~~~-~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  214 LRIPS-FKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             eeccc-eeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence            32221 11111112235689999999999 699999999999999998876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=3.2e-07  Score=79.36  Aligned_cols=192  Identities=8%  Similarity=0.024  Sum_probs=116.6

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE-eC-
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC-SV-  144 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~-  144 (339)
                      +......|+|+++    .+++..+    + .|.++|+.+++.+.+...   .     +......|+| |++.++.. +. 
T Consensus       188 ~~~~~p~wSpDG~----~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~-----g~~~~~~~SP-DG~~la~~~~~~  254 (419)
T PRK04043        188 GLNIFPKWANKEQ----TAFYYTSYGERKPTLYKYNLYTGKKEKIASS---Q-----GMLVVSDVSK-DGSKLLLTMAPK  254 (419)
T ss_pred             CCeEeEEECCCCC----cEEEEEEccCCCCEEEEEECCCCcEEEEecC---C-----CcEEeeEECC-CCCEEEEEEccC
Confidence            3678899999993    3355322    2 799999988864443322   2     4455678998 88766543 33 


Q ss_pred             -CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          145 -DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       145 -d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                       +..|.++|+.+++ ...+..+........|+ +++.|+..+. .+  .|.+.|+.+++........  .  .  ...|+
T Consensus       255 g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~--~--~~~~S  327 (419)
T PRK04043        255 GQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--K--N--NSSVS  327 (419)
T ss_pred             CCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--C--c--CceEC
Confidence             3568888987776 34444344334456799 6776665553 33  5788888877643333322  1  1  24899


Q ss_pred             cCCCCeEEEEeeCC--------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCc--EEEEEecCC
Q 040307          220 KADPRFMATVGMDS--------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSR--ALIWEVVGP  288 (339)
Q Consensus       220 p~~~~~l~~~~~d~--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--v~iwd~~~~  288 (339)
                      | +|+.|+..+...        ..|.+.|+... . ...+... .......|+|||. .|+..+ ..+.  +.+.++...
T Consensus       328 P-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT~~-~~~~~p~~SPDG~-~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        328 T-YKNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLTAN-GVNQFPRFSSDGG-SIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             C-CCCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECCCC-CCcCCeEECCCCC-EEEEEEccCCcEEEEEEecCCC
Confidence            9 778776665442        24888888653 2 3444433 2334689999995 555444 3344  445555443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.13  E-value=4.5e-07  Score=73.18  Aligned_cols=225  Identities=13%  Similarity=0.075  Sum_probs=141.7

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEc-CCCCCCCCCeEEEeCCcEEE
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFF-PSEETLNPDIVATSGDSLRL  100 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~~~~~la~~~~~i~i  100 (339)
                      ++.|.+.  ++.++.+-.    ..+.|..  ++..+.....     ..... ...+.+. +++     .++++..+.+.+
T Consensus         4 gp~~d~~--~g~l~~~D~----~~~~i~~--~~~~~~~~~~-----~~~~~-~~G~~~~~~~g-----~l~v~~~~~~~~   64 (246)
T PF08450_consen    4 GPVWDPR--DGRLYWVDI----PGGRIYR--VDPDTGEVEV-----IDLPG-PNGMAFDRPDG-----RLYVADSGGIAV   64 (246)
T ss_dssp             EEEEETT--TTEEEEEET----TTTEEEE--EETTTTEEEE-----EESSS-EEEEEEECTTS-----EEEEEETTCEEE
T ss_pred             ceEEECC--CCEEEEEEc----CCCEEEE--EECCCCeEEE-----EecCC-CceEEEEccCC-----EEEEEEcCceEE
Confidence            4678884  166666655    5787777  4444444432     22222 7777888 676     787777777777


Q ss_pred             EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------CeEEEEECCCCeeeeeeeccCCceeEE
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------TTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      +|..+++.+.+......  .......+.+++.| ++++.++....        |.|..++.. ++..... ..-...+.+
T Consensus        65 ~d~~~g~~~~~~~~~~~--~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi  139 (246)
T PF08450_consen   65 VDPDTGKVTVLADLPDG--GVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGI  139 (246)
T ss_dssp             EETTTTEEEEEEEEETT--CSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEE
T ss_pred             EecCCCcEEEEeeccCC--CcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccce
Confidence            79888865555444211  00126788999998 88877776543        568888876 5533333 334567899


Q ss_pred             Eec-CCcEE-EEEeCCCcEEEEECCCCcc----eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          173 SWG-GFNVF-ASVSGDCSVRVFDLRDKER----STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       173 ~~~-~~~~l-~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      +|+ +++.| ++-+..+.|..+++.....    ...+.......+..-.+++.+ +|++.++....+. |.++|.+  ++
T Consensus       140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~-I~~~~p~--G~  215 (246)
T PF08450_consen  140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGR-IVVFDPD--GK  215 (246)
T ss_dssp             EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTE-EEEEETT--SC
T ss_pred             EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCE-EEEECCC--cc
Confidence            999 66655 4667788899999864432    222233322223477899996 8887776665666 9999976  56


Q ss_pred             ceEEEecCCCCeeEEEec-cCCCCeEEEE
Q 040307          247 PVVVLSKHEGSVNGISWA-PLYGRRLCSV  274 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~-p~~~~~l~~~  274 (339)
                      .+..+......+++++|. |+...+++|.
T Consensus       216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  216 LLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            677777665689999994 6654455443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.11  E-value=2.1e-07  Score=80.17  Aligned_cols=258  Identities=12%  Similarity=-0.067  Sum_probs=140.8

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCccee
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTEL  110 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~  110 (339)
                      +..+++++    .++.+..++  ..+++..-    .......+.+.-...++     .+++...+ .+..+|.++++  .
T Consensus       105 ~~~v~v~~----~~g~l~ald--~~tG~~~W----~~~~~~~~~~~p~v~~~-----~v~v~~~~g~l~a~d~~tG~--~  167 (377)
T TIGR03300       105 GGLVFVGT----EKGEVIALD--AEDGKELW----RAKLSSEVLSPPLVANG-----LVVVRTNDGRLTALDAATGE--R  167 (377)
T ss_pred             CCEEEEEc----CCCEEEEEE--CCCCcEee----eeccCceeecCCEEECC-----EEEEECCCCeEEEEEcCCCc--e
Confidence            45666766    588888854  44444332    11112222211111234     45555555 89999998887  3


Q ss_pred             EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC----c------e-eEEEecCCcE
Q 040307          111 KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR----E------V-YDISWGGFNV  179 (339)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~  179 (339)
                      +-.+..................  + ..++.+..++.+..+|+++++.+........    .      + ....+ .+..
T Consensus       168 ~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~  243 (377)
T TIGR03300       168 LWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQ  243 (377)
T ss_pred             eeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCE
Confidence            3333221100000000011121  2 4677888889999999999986654321100    0      0 01112 2567


Q ss_pred             EEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-CCCe
Q 040307          180 FASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-EGSV  258 (339)
Q Consensus       180 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-~~~v  258 (339)
                      ++.++.++.++.||..+++..-.. ..    ........   .+..+++++.++. +..+|..+ ++.+...... ....
T Consensus       244 vy~~~~~g~l~a~d~~tG~~~W~~-~~----~~~~~p~~---~~~~vyv~~~~G~-l~~~d~~t-G~~~W~~~~~~~~~~  313 (377)
T TIGR03300       244 VYAVSYQGRVAALDLRSGRVLWKR-DA----SSYQGPAV---DDNRLYVTDADGV-VVALDRRS-GSELWKNDELKYRQL  313 (377)
T ss_pred             EEEEEcCCEEEEEECCCCcEEEee-cc----CCccCceE---eCCEEEEECCCCe-EEEEECCC-CcEEEccccccCCcc
Confidence            777888999999999887632211 11    11122222   3566777788888 99999976 4444333211 1112


Q ss_pred             eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-cccee-EEEEecCCCCceEEEecCCeEEE
Q 040307          259 NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEI-NVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       259 ~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i-~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      .+...  .+ ..|++++.+|.|.++|..+++             .+.... +...+ .+.... ++ .|+.++.||.|..
T Consensus       314 ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~-------------~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~  375 (377)
T TIGR03300       314 TAPAV--VG-GYLVVGDFEGYLHWLSREDGS-------------FVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYA  375 (377)
T ss_pred             ccCEE--EC-CEEEEEeCCCEEEEEECCCCC-------------EEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEE
Confidence            22222  34 378889999999999988877             332222 22222 222222 33 5889999999987


Q ss_pred             Ee
Q 040307          337 LK  338 (339)
Q Consensus       337 w~  338 (339)
                      |+
T Consensus       376 ~~  377 (377)
T TIGR03300       376 FR  377 (377)
T ss_pred             eC
Confidence            64

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.11  E-value=2e-06  Score=69.44  Aligned_cols=215  Identities=9%  Similarity=0.027  Sum_probs=132.2

Q ss_pred             EEEEcC-CCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307           76 NIAFFP-SEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD  152 (339)
Q Consensus        76 ~l~~~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d  152 (339)
                      ++.|.+ ++     .++.+.- + .|..|+..+++   ...+..       .....+.+...+ ..|+.+... .+.++|
T Consensus         4 gp~~d~~~g-----~l~~~D~~~~~i~~~~~~~~~---~~~~~~-------~~~~G~~~~~~~-g~l~v~~~~-~~~~~d   66 (246)
T PF08450_consen    4 GPVWDPRDG-----RLYWVDIPGGRIYRVDPDTGE---VEVIDL-------PGPNGMAFDRPD-GRLYVADSG-GIAVVD   66 (246)
T ss_dssp             EEEEETTTT-----EEEEEETTTTEEEEEETTTTE---EEEEES-------SSEEEEEEECTT-SEEEEEETT-CEEEEE
T ss_pred             ceEEECCCC-----EEEEEEcCCCEEEEEECCCCe---EEEEec-------CCCceEEEEccC-CEEEEEEcC-ceEEEe
Confidence            578888 55     6777765 3 89999988874   222322       236677887325 555555554 445559


Q ss_pred             CCCCeeeeeeec-----cCCceeEEEec-CCcEEEEEeCC--------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307          153 IDREILETQLVA-----HDREVYDISWG-GFNVFASVSGD--------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       153 ~~~~~~~~~~~~-----~~~~v~~~~~~-~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  218 (339)
                      ..+++.......     .....+++++. ++++.++....        |.|..++.. ++ .......   -.....++|
T Consensus        67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~---~~~pNGi~~  141 (246)
T PF08450_consen   67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG---LGFPNGIAF  141 (246)
T ss_dssp             TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE---ESSEEEEEE
T ss_pred             cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC---cccccceEE
Confidence            988864333322     23467889999 78877776654        457777766 33 2222222   246789999


Q ss_pred             ecCCCCeEEEEeeCCCeEEEEecCCCCCceE------EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307          219 NKADPRFMATVGMDSNKVVVLDIRFPTNPVV------VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS  292 (339)
Q Consensus       219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~  292 (339)
                      +| +++.|++.......|..|++......+.      .+....+..-.+++.++| ++.++.-..+.|.+++.+ ++   
T Consensus       142 s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~---  215 (246)
T PF08450_consen  142 SP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GK---  215 (246)
T ss_dssp             ET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC---
T ss_pred             CC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-cc---
Confidence            98 7877765555444499999875343121      122222247789999999 577777778999999987 44   


Q ss_pred             CCCCCCCcccceeeec-ccceeEEEEec-CCCCceEEE
Q 040307          293 GNGGPSGDVEPELCYQ-SMAEINVVRWS-PLELDWIAI  328 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~-p~~~~l~~~  328 (339)
                                .+.... ....+++++|. |+...|+.+
T Consensus       216 ----------~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  216 ----------LLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             ----------EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             ----------EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence                      232222 23589999994 665555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=3.5e-10  Score=95.19  Aligned_cols=168  Identities=15%  Similarity=0.159  Sum_probs=121.4

Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-------eeeeeeeccCCceeEEEec-CCcEEE
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-------ILETQLVAHDREVYDISWG-GFNVFA  181 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~-~~~~l~  181 (339)
                      .+..+.+|+     ..|..+.--. +.+.+++++.|.+|++|.++..       .+..+++.|+.+|.++.|- +..+++
T Consensus       727 rL~nf~GH~-----~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~  800 (1034)
T KOG4190|consen  727 RLCNFTGHQ-----EKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA  800 (1034)
T ss_pred             eeecccCcH-----HHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee
Confidence            344566776     6777776553 7889999999999999998642       3667788999999999998 666666


Q ss_pred             EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEE-eeCCCeEEEEecCCCCCceEEE-----ecC
Q 040307          182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATV-GMDSNKVVVLDIRFPTNPVVVL-----SKH  254 (339)
Q Consensus       182 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~-~~d~~~i~i~d~~~~~~~~~~~-----~~~  254 (339)
                      ++  ||.|.+||.--++........+.+ +.+..+.--|. +..++.++ +...+ |+++|.+.. .-...+     .+.
T Consensus       801 Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeST-VKl~DaRsc-e~~~E~kVcna~~P  875 (1034)
T KOG4190|consen  801 SC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAEST-VKLFDARSC-EWTCELKVCNAPGP  875 (1034)
T ss_pred             ec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhh-heeeecccc-cceeeEEeccCCCC
Confidence            54  889999998877755544433333 33333433333 34455554 56666 999999873 333333     234


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +..+++++..|.| +.++.+-.+|+|.+.|.+++.
T Consensus       876 na~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  876 NALTRAIAVADKG-NKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             chheeEEEeccCc-chhhHHhcCCcEEEEecCCCc
Confidence            4678999999999 699999999999999999987

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=7.5e-09  Score=83.87  Aligned_cols=94  Identities=17%  Similarity=0.277  Sum_probs=74.6

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..|.+++|+|.+..++..++.+.+|+|.|+++...+..+..+ ..+++++|.  +.++|..|-..|.|.+||+|..+.+.
T Consensus       194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             hhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence            789999999966668999999999999999999988888877 789999999  57788899999999999999987544


Q ss_pred             eEEeCCCCCCCeEEEEE
Q 040307          202 IIYENPVQDCPLLRLEW  218 (339)
Q Consensus       202 ~~~~~~~~~~~v~~~~~  218 (339)
                      ..........+|..++.
T Consensus       273 ~e~~a~~t~~pv~~i~~  289 (463)
T KOG1645|consen  273 MELVANVTINPVHKIAP  289 (463)
T ss_pred             hhhhhhhccCcceeecc
Confidence            33322122344554443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.03  E-value=1.5e-10  Score=98.88  Aligned_cols=206  Identities=17%  Similarity=0.287  Sum_probs=142.6

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe----
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS----  143 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----  143 (339)
                      ....+.|++++.+..+   .+++.|..  .|-+-.+......-.....++.     .++++++|++.|.+.||+|-    
T Consensus        55 dtqy~kcva~~y~~d~---cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a-----r~Ct~lAwneLDtn~LAagldkhr  126 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDR---CILAVGSATGNISLLSVRHPHDSSAEVTPGYA-----RPCTSLAWNELDTNHLAAGLDKHR  126 (783)
T ss_pred             cCCCceeehhhcCCch---hhhhhccccCceEEeecCCcccccceeccccc-----ccccccccccccHHHHHhhhhhhc
Confidence            3456788888776631   46777753  7777777665422233444554     89999999998888888874    


Q ss_pred             CCCeEEEEECCCC--eee--eeeec-cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307          144 VDTTCVIWDIDRE--ILE--TQLVA-HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE  217 (339)
Q Consensus       144 ~d~~v~i~d~~~~--~~~--~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  217 (339)
                      .|..+.|||+.++  .+.  ..+.+ ......+++|. +..++.+|...+.+.++|+|..........    ...+..+.
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~t  202 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGIT  202 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccce
Confidence            3678999999876  221  12222 33456688898 888999999999999999995542222222    23566778


Q ss_pred             EecCCCCeEEEEeeCCCeEEEEe-cCCCCCceEEEecCCC----CeeEEEeccCCCCeEEEEeCC-CcEEEEEecCCC
Q 040307          218 WNKADPRFMATVGMDSNKVVVLD-IRFPTNPVVVLSKHEG----SVNGISWAPLYGRRLCSVADD-SRALIWEVVGPG  289 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~~i~i~d-~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~d-g~v~iwd~~~~~  289 (339)
                      ..|..++++++-. ++. |.+|| .++...++..+.....    .+..++|.|....++++.+.| ++|+++|+..-.
T Consensus       203 Vdp~~~nY~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~  278 (783)
T KOG1008|consen  203 VDPFSPNYFCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG  278 (783)
T ss_pred             ecCCCCCceeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence            8887888888765 777 99999 5555555554443333    489999999876678887755 689999987654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.00  E-value=2.4e-06  Score=73.67  Aligned_cols=220  Identities=11%  Similarity=-0.044  Sum_probs=121.9

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCce-EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT-NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~  109 (339)
                      +..+.+++    .++.|..++  ..+++..-.    ......+. .... .++     .+++.+.+ .+..+|.++++  
T Consensus        65 ~~~v~v~~----~~g~v~a~d--~~tG~~~W~----~~~~~~~~~~p~v-~~~-----~v~v~~~~g~l~ald~~tG~--  126 (377)
T TIGR03300        65 GGKVYAAD----ADGTVVALD--AETGKRLWR----VDLDERLSGGVGA-DGG-----LVFVGTEKGEVIALDAEDGK--  126 (377)
T ss_pred             CCEEEEEC----CCCeEEEEE--ccCCcEeee----ecCCCCcccceEE-cCC-----EEEEEcCCCEEEEEECCCCc--
Confidence            44667777    578888844  444443321    11112221 2222 133     45544445 99999998887  


Q ss_pred             eEEEeecCCCccCCCCEEE-EEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee-----EEEecCCcEEEEE
Q 040307          110 LKSLLNSNKTSEFSSAITS-FDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY-----DISWGGFNVFASV  183 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~l~~~  183 (339)
                      .+......      ..+.+ ...   .+..++.++.++.|..+|.++++.+..+........     +.... +..++.+
T Consensus       127 ~~W~~~~~------~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~  196 (377)
T TIGR03300       127 ELWRAKLS------SEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVG  196 (377)
T ss_pred             EeeeeccC------ceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEE
Confidence            33322221      12211 111   245677778899999999999987776643322111     11112 3567788


Q ss_pred             eCCCcEEEEECCCCcceeeEEe-CCCCCCCe-------EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC
Q 040307          184 SGDCSVRVFDLRDKERSTIIYE-NPVQDCPL-------LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE  255 (339)
Q Consensus       184 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~v-------~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~  255 (339)
                      ..++.+..+|.++++..-.... .+.....+       .+..+   .+..+++++.++. ++.||..+ ++.+..... .
T Consensus       197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~-l~a~d~~t-G~~~W~~~~-~  270 (377)
T TIGR03300       197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGR-VAALDLRS-GRVLWKRDA-S  270 (377)
T ss_pred             CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCE-EEEEECCC-CcEEEeecc-C
Confidence            8889999999988863221110 00000000       11112   2456777788888 99999986 444444331 1


Q ss_pred             CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                       ......  ..+ ..++.++.+|.+..+|..+++
T Consensus       271 -~~~~p~--~~~-~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       271 -SYQGPA--VDD-NRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             -CccCce--EeC-CEEEEECCCCeEEEEECCCCc
Confidence             111222  234 377788889999999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.00  E-value=1.1e-06  Score=75.38  Aligned_cols=127  Identities=10%  Similarity=0.163  Sum_probs=86.0

Q ss_pred             EEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCC
Q 040307          190 RVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGR  269 (339)
Q Consensus       190 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  269 (339)
                      .+|++...+........-..+..+.+++++| +...++.|+.||. |.+||....   +..+....-..+.++|+|+| .
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgS-iiLyD~~~~---~t~~~ka~~~P~~iaWHp~g-a  312 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGS-IILYDTTRG---VTLLAKAEFIPTLIAWHPDG-A  312 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCe-EEEEEcCCC---eeeeeeecccceEEEEcCCC-c
Confidence            4677665542222222112457899999998 8899999999999 999998763   33333345567899999999 5


Q ss_pred             eEEEEeCCCcEEEEEecCCCC----CCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307          270 RLCSVADDSRALIWEVVGPGY----RSGNGGPSGDVEPELCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       270 ~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~  322 (339)
                      ++++|+..|.+.+||+.-...    ..++..|...++.-..+.+...+..+.|.+..
T Consensus       313 i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  313 IFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             EEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence            999999999999999976552    11122222222222333556778889998543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=2.9e-09  Score=84.57  Aligned_cols=184  Identities=16%  Similarity=0.190  Sum_probs=125.4

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      +..++.+..-.| +|+-+- .+..+++|.     +..|-|  .+.+++.-..     +...+.|.++.|...+     .+
T Consensus       206 ~~SlQi~~a~~C-awSlni-~gyhfs~G~-----sqqv~L--~nvetg~~qs-----f~sksDVfAlQf~~s~-----nL  266 (425)
T KOG2695|consen  206 LCSLQIPKAWSC-AWSLNI-MGYHFSVGL-----SQQVLL--TNVETGHQQS-----FQSKSDVFALQFAGSD-----NL  266 (425)
T ss_pred             eeeecCCcchhh-hhhhcc-ceeeecccc-----cceeEE--EEeecccccc-----cccchhHHHHHhcccC-----Ce
Confidence            444444443333 777441 144555666     777878  5555554443     5577889999999988     78


Q ss_pred             EEEeCC--cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---eeee
Q 040307           91 VATSGD--SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL---ETQL  162 (339)
Q Consensus        91 la~~~~--~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~  162 (339)
                      +..|..  .|..+|++...   ..+...+- |.     +.|+++..-..++++|++++.+|+|++||++.-++   ++++
T Consensus       267 v~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~-----Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY  340 (425)
T KOG2695|consen  267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD-----SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY  340 (425)
T ss_pred             eEecccCCcEEEEEeeecccCCCcceEEEE-cC-----cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee
Confidence            888874  99999998751   22333332 33     78888887644788999999999999999987766   8888


Q ss_pred             eccCCceeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-CCCCCCeEEEEEe
Q 040307          163 VAHDREVYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-PVQDCPLLRLEWN  219 (339)
Q Consensus       163 ~~~~~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~  219 (339)
                      .+|-+.-.-+-++   ....+++++.|...+||.++.+.....+... ...+..+.+++|.
T Consensus       341 eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  341 EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            8887765555555   3567888999999999999988754443221 1122345566664

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=1.8e-08  Score=81.62  Aligned_cols=152  Identities=9%  Similarity=0.072  Sum_probs=101.5

Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCc
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNP  247 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~  247 (339)
                      .+.++ .+.+++.+..+....+++++.......+.....-.....++.|.. +......+...|.  .+.+|....  .+
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~--~~  143 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS--GR  143 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccc--cC
Confidence            34445 477888888888877888776653111111100112334555554 3333333333333  245554443  33


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~  326 (339)
                      ...+-+|-..+..|+|+||. ++|+++..|..|++-.+....            ... ...+|..-|..++.-++.. |+
T Consensus       144 ~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f------------~IesfclGH~eFVS~isl~~~~~-Ll  209 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF------------VIESFCLGHKEFVSTISLTDNYL-LL  209 (390)
T ss_pred             cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc------------chhhhccccHhheeeeeeccCce-ee
Confidence            45566899999999999999 699999999999998877755            111 4458999999999988865 88


Q ss_pred             EEecCCeEEEEeC
Q 040307          327 AIAFVNKLQLLKV  339 (339)
Q Consensus       327 ~~~~d~~v~~w~v  339 (339)
                      ++|.|++|++|++
T Consensus       210 S~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  210 SGSGDKTLRLWDI  222 (390)
T ss_pred             ecCCCCcEEEEec
Confidence            9999999999985

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=6.8e-08  Score=85.73  Aligned_cols=112  Identities=15%  Similarity=0.315  Sum_probs=86.8

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--c
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--S   97 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~   97 (339)
                      .+-.+|+|.   ..++|+++++....|.|.||  -..+ +...    ....+-.+++++|+|..     -+|+.|-+  .
T Consensus        18 sti~SWHPs---ePlfAVA~fS~er~GSVtIf--adtG-EPqr----~Vt~P~hatSLCWHpe~-----~vLa~gwe~g~   82 (1416)
T KOG3617|consen   18 STISSWHPS---EPLFAVASFSPERGGSVTIF--ADTG-EPQR----DVTYPVHATSLCWHPEE-----FVLAQGWEMGV   82 (1416)
T ss_pred             ccccccCCC---CceeEEEEecCCCCceEEEE--ecCC-CCCc----ccccceehhhhccChHH-----HHHhhccccce
Confidence            344589999   99999999988889999995  3322 2222    11223346779999998     78888875  8


Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID  154 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~  154 (339)
                      +.+|...+.+  .......|.     .+|..+.||+ +|..++++..-|.|.+|...
T Consensus        83 ~~v~~~~~~e--~htv~~th~-----a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   83 SDVQKTNTTE--THTVVETHP-----APIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eEEEecCCce--eeeeccCCC-----CCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            9999988775  555555677     8999999998 99999999999999999875

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=2e-07  Score=82.05  Aligned_cols=245  Identities=12%  Similarity=0.131  Sum_probs=162.7

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC---CC---CCeEE
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET---LN---PDIVA   92 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---~~---~~~la   92 (339)
                      .-.++.|+|.   | ++|.|+     ...|.+  ++....+..+  .+ ..|+..|+.+.|.|....   ..   ..+++
T Consensus        17 N~~A~Dw~~~---G-LiAygs-----hslV~V--VDs~s~q~iq--si-e~h~s~V~~VrWap~~~p~~llS~~~~~lli   82 (1062)
T KOG1912|consen   17 NRNAADWSPS---G-LIAYGS-----HSLVSV--VDSRSLQLIQ--SI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI   82 (1062)
T ss_pred             cccccccCcc---c-eEEEec-----CceEEE--Eehhhhhhhh--cc-ccCccceeEEEeccCCCchhccCccccceeE
Confidence            3567889998   5 789998     578888  5544444443  33 468899999999875321   00   13344


Q ss_pred             EeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC--CC-CEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           93 TSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF--DT-RRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        93 ~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      +.+|   .|.+||+....  ....+..+.     .++..++|-|.  +. ..|++-....++-+|+..+|+...++....
T Consensus        83 AsaD~~GrIil~d~~~~s--~~~~l~~~~-----~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~  155 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVLAS--VINWLSHSN-----DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH  155 (1062)
T ss_pred             EeccccCcEEEEEehhhh--hhhhhcCCC-----cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC
Confidence            4443   99999998876  566677766     78889998752  33 567776778899999999999888887666


Q ss_pred             CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcce---e-eEEeCCCCCC-------------------------CeEE
Q 040307          167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERS---T-IIYENPVQDC-------------------------PLLR  215 (339)
Q Consensus       167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~---~-~~~~~~~~~~-------------------------~v~~  215 (339)
                      ....|+.+.  +...+..-+..|.+.+-+.-..+.+   . .++-...|..                         ....
T Consensus       156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~  235 (1062)
T KOG1912|consen  156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ  235 (1062)
T ss_pred             cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence            677778887  4556666666676666654322211   0 0100000000                         1123


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCC-CeEEEEeCCCcEEEEEecC
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG-RRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~iwd~~~  287 (339)
                      ++|+|.-.+.++. ..... +.++|++- ..++....-..+.+.-+.|-|+.. ..|++.-.||.+.+|-.+.
T Consensus       236 faf~p~~rn~lfi-~~pre-llv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  236 FAFSPHWRNILFI-TFPRE-LLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhcChhhhceEEE-Eeccc-eEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            5678854555544 44555 99999987 667777777777777788888753 3677888999999997765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.93  E-value=6.4e-07  Score=82.69  Aligned_cols=248  Identities=15%  Similarity=0.235  Sum_probs=148.7

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      +.|.++.|.-+   ...++.+.    ..|.|.+  .+.++.....    ...-...|.+++|+||.     ++++..++ 
T Consensus        69 ~~i~s~~fl~d---~~~i~v~~----~~G~iil--vd~et~~~ei----vg~vd~GI~aaswS~De-----e~l~liT~~  130 (1265)
T KOG1920|consen   69 DEIVSVQFLAD---TNSICVIT----ALGDIIL--VDPETLELEI----VGNVDNGISAASWSPDE-----ELLALITGR  130 (1265)
T ss_pred             cceEEEEEecc---cceEEEEe----cCCcEEE--Ecccccceee----eeeccCceEEEeecCCC-----cEEEEEeCC
Confidence            57889999998   88888888    7899999  5666555554    23456789999999999     77766553 


Q ss_pred             -cEEEEee--c--CC-----------c------ceeEEEeecCCC----------------ccCCCCEEEEEEcCCCCCE
Q 040307           97 -SLRLWEI--H--DD-----------R------TELKSLLNSNKT----------------SEFSSAITSFDWAGFDTRR  138 (339)
Q Consensus        97 -~i~iw~~--~--~~-----------~------~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~  138 (339)
                       ++.+-.-  +  ..           +      .+....|.+...                ......=+.+.|.. ||++
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~  209 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEY  209 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcE
Confidence             4433221  0  00           0      001112221110                00011223588985 9999


Q ss_pred             EEEEe----CC-CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEe---CCCcEEEEECCCCcceeeEEeCCCC
Q 040307          139 VATCS----VD-TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVS---GDCSVRVFDLRDKERSTIIYENPVQ  209 (339)
Q Consensus       139 l~~~~----~d-~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~  209 (339)
                      +|+..    .+ ..|++||.+ +..-..-....+.-.+++|-| |.++++-.   .|+.|.+|.-...+.-......+..
T Consensus       210 fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  210 FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence            99843    23 799999976 432222222233446788884 77777653   3567888886665543333333344


Q ss_pred             CCCeEEEEEecCCCCeEEE---EeeCCCeEEEEecCCCCCce-EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          210 DCPLLRLEWNKADPRFMAT---VGMDSNKVVVLDIRFPTNPV-VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~---~~~d~~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      ..++..++|+. ++.+|++   ...... |++|-+.+..-.+ +.+.......  +.|+|..++.|..-..+|...++++
T Consensus       289 e~~ve~L~Wns-~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  289 EKEVEELAWNS-NSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ccchheeeecC-CCCceeeeecccccce-EEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            45699999996 8888888   333333 9999887632212 2222222222  8888876666666657777776666


Q ss_pred             cCCC
Q 040307          286 VGPG  289 (339)
Q Consensus       286 ~~~~  289 (339)
                      ....
T Consensus       365 ~~~t  368 (1265)
T KOG1920|consen  365 AWTT  368 (1265)
T ss_pred             EEee
Confidence            5433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.92  E-value=8.4e-07  Score=77.40  Aligned_cols=209  Identities=10%  Similarity=0.117  Sum_probs=123.6

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--   96 (339)
                      .|.--++.-.   +++++.|+    ..|.+++|+  ..++....  ....+..+.+.....+++.     .++|.|+.  
T Consensus        35 ~v~lTc~dst---~~~l~~Gs----S~G~lyl~~--R~~~~~~~--~~~~~~~~~~~~~~vs~~e-----~lvAagt~~g   98 (726)
T KOG3621|consen   35 RVKLTCVDAT---EEYLAMGS----SAGSVYLYN--RHTGEMRK--LKNEGATGITCVRSVSSVE-----YLVAAGTASG   98 (726)
T ss_pred             eEEEEEeecC---CceEEEec----ccceEEEEe--cCchhhhc--ccccCccceEEEEEecchh-----HhhhhhcCCc
Confidence            3433445555   78999999    799999955  44444332  0011234456667778887     78888875  


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeeccCCceeEE
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI----LETQLVAHDREVYDI  172 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~~~~v~~~  172 (339)
                      .|.++.++........ +-.+-...|...|++++|++ ++..+.+|...|+|.+-.+....    ..+.+....+.|-.+
T Consensus        99 ~V~v~ql~~~~p~~~~-~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl  176 (726)
T KOG3621|consen   99 RVSVFQLNKELPRDLD-YVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL  176 (726)
T ss_pred             eEEeehhhccCCCcce-eeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence            8888888775421111 11111222448999999997 99999999999999998887621    223333456678778


Q ss_pred             EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC---CCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA---DPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      .+.++.+|++....  ..++++.... ...+...+.....-...+|-|.   ...-.+.++.-|  .++|...-.+..+.
T Consensus       177 D~~q~~LLVStl~r--~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~  251 (726)
T KOG3621|consen  177 DYLQSYLLVSTLTR--CILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIK  251 (726)
T ss_pred             ecccceehHhhhhh--hheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEE
Confidence            77766666554432  3455655443 2222222111111234555552   133444555555  78998766554443


Q ss_pred             E
Q 040307          250 V  250 (339)
Q Consensus       250 ~  250 (339)
                      +
T Consensus       252 T  252 (726)
T KOG3621|consen  252 T  252 (726)
T ss_pred             e
Confidence            3

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.90  E-value=7.9e-06  Score=65.89  Aligned_cols=231  Identities=12%  Similarity=0.054  Sum_probs=144.6

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe----
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS----  143 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----  143 (339)
                      +.....++.+|...    ..++.+-.   ...+||..+++  ....+......-|   --.-.|+| ++++|++.=    
T Consensus         4 P~RgH~~a~~p~~~----~avafaRRPG~~~~v~D~~~g~--~~~~~~a~~gRHF---yGHg~fs~-dG~~LytTEnd~~   73 (305)
T PF07433_consen    4 PARGHGVAAHPTRP----EAVAFARRPGTFALVFDCRTGQ--LLQRLWAPPGRHF---YGHGVFSP-DGRLLYTTENDYE   73 (305)
T ss_pred             CccccceeeCCCCC----eEEEEEeCCCcEEEEEEcCCCc--eeeEEcCCCCCEE---ecCEEEcC-CCCEEEEeccccC
Confidence            34566788999663    67777753   88999999987  4444433221111   11356887 999988863    


Q ss_pred             -CCCeEEEEECC-CCeeeeeeeccCCceeEEEec-CCcEEEEEeC------------------CCcEEEEECCCCcceee
Q 040307          144 -VDTTCVIWDID-REILETQLVAHDREVYDISWG-GFNVFASVSG------------------DCSVRVFDLRDKERSTI  202 (339)
Q Consensus       144 -~d~~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~  202 (339)
                       ..|.|-|||.. +-+.+.++..|.-.-..+.+. ++..|+.+..                  +.++.+.|.++++....
T Consensus        74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q  153 (305)
T PF07433_consen   74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ  153 (305)
T ss_pred             CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence             35789999998 556777787777667778888 6656665532                  33555666677664443


Q ss_pred             EEe-CCCCCCCeEEEEEecCCCCeEEEEeeCCC------eEEEEecCCCCCceEEEe-------cCCCCeeEEEeccCCC
Q 040307          203 IYE-NPVQDCPLLRLEWNKADPRFMATVGMDSN------KVVVLDIRFPTNPVVVLS-------KHEGSVNGISWAPLYG  268 (339)
Q Consensus       203 ~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~d~~------~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~  268 (339)
                      ... ...|+..+..+++.+ +|..++..-..+-      -+.+++...   ++..+.       .-.+.+-+|++++++.
T Consensus       154 ~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~  229 (305)
T PF07433_consen  154 VELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGR  229 (305)
T ss_pred             eecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCC
Confidence            222 133667899999996 7766665544432      134443322   222222       2345789999999995


Q ss_pred             CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          269 RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       269 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      .+.+|+-.-+.+.+||..++.              +.....-..+..++-.+++ ++++.+.
T Consensus       230 ~ia~tsPrGg~~~~~d~~tg~--------------~~~~~~l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  230 LIAVTSPRGGRVAVWDAATGR--------------LLGSVPLPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEEECCCCCEEEEEECCCCC--------------EeeccccCceeeeeecCCc-eEEeCCC
Confidence            334455577899999999887              2222233446677766666 3444433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=9.1e-09  Score=81.80  Aligned_cols=171  Identities=13%  Similarity=0.168  Sum_probs=116.5

Q ss_pred             EEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307           78 AFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE  156 (339)
Q Consensus        78 ~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  156 (339)
                      +|+-+-..   ..+++|.+ .|-+-+++++-   ...|. .+     +.|.++.|.. .++++..|..+|.|..+|++..
T Consensus       218 awSlni~g---yhfs~G~sqqv~L~nvetg~---~qsf~-sk-----sDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~r  284 (425)
T KOG2695|consen  218 AWSLNIMG---YHFSVGLSQQVLLTNVETGH---QQSFQ-SK-----SDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCR  284 (425)
T ss_pred             hhhhccce---eeecccccceeEEEEeeccc---ccccc-cc-----hhHHHHHhcc-cCCeeEecccCCcEEEEEeeec
Confidence            66644321   23445556 88888888873   33343 23     7899999985 7899999999999999999865


Q ss_pred             -----eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          157 -----ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       157 -----~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                           .+...+ .|.+.|+++..-  ++.+|++.+.+|+|++||+|..+..  ...++++-......-+..++ ....++
T Consensus       285 nqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~  362 (425)
T KOG2695|consen  285 NQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIF  362 (425)
T ss_pred             ccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEE
Confidence                 244445 489999998876  5889999999999999999987652  33344411112222234454 556777


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecC----CCCeeEEEecc
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKH----EGSVNGISWAP  265 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~p  265 (339)
                      +++.|-. .+||.++. +..+.++...    ...+.+++|..
T Consensus       363 s~GdDcy-tRiWsl~~-ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  363 SVGDDCY-TRIWSLDS-GHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EccCeeE-EEEEeccc-CceeeccCCCCccccccccceehhc
Confidence            7888887 99999987 5556555432    22455555543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.88  E-value=3.2e-06  Score=71.96  Aligned_cols=273  Identities=13%  Similarity=0.153  Sum_probs=146.3

Q ss_pred             eecCCcccEEEEeee-----ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEE
Q 040307           26 SVRHDRKSRLAVGSF-----LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLR   99 (339)
Q Consensus        26 sp~~~~~~~la~g~~-----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~   99 (339)
                      |||   +++++....     .-...+.+.||++..  +....   + ......+....|||++     +.+|-..+ .|.
T Consensus         1 S~d---~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~---l-~~~~~~~~~~~~sP~g-----~~~~~v~~~nly   66 (353)
T PF00930_consen    1 SPD---GKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITP---L-TPPPPKLQDAKWSPDG-----KYIAFVRDNNLY   66 (353)
T ss_dssp             -TT---SSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEE---S-S-EETTBSEEEE-SSS-----TEEEEEETTEEE
T ss_pred             CCC---CCeEEEEECcEEeeeeccceeEEEEecCC--CceEE---C-cCCccccccceeecCC-----CeeEEEecCceE
Confidence            567   777777543     111246677755554  33332   1 1125678999999999     78888776 999


Q ss_pred             EEeecCCcceeEEEeecCC-----------CccCCCCEEEEEEcCCCCCEEEEEeCC-C---------------------
Q 040307          100 LWEIHDDRTELKSLLNSNK-----------TSEFSSAITSFDWAGFDTRRVATCSVD-T---------------------  146 (339)
Q Consensus       100 iw~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~~l~~~~~d-~---------------------  146 (339)
                      +++..+++...+ +..+..           .++....-..+-||| ++++||....| .                     
T Consensus        67 ~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~  144 (353)
T PF00930_consen   67 LRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE  144 (353)
T ss_dssp             EESSTTSEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE
T ss_pred             EEECCCCCeEEe-ccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCccc
Confidence            999877742222 222200           011012335788998 88888875432 1                     


Q ss_pred             --------------eEEEEECCCCeeee-ee----eccCCceeEEEec-CCcEEEEE--eCCC---cEEEEECCCCccee
Q 040307          147 --------------TCVIWDIDREILET-QL----VAHDREVYDISWG-GFNVFASV--SGDC---SVRVFDLRDKERST  201 (339)
Q Consensus       147 --------------~v~i~d~~~~~~~~-~~----~~~~~~v~~~~~~-~~~~l~~~--~~d~---~i~i~d~~~~~~~~  201 (339)
                                    .+.|+|+.+++... ..    ..-...+..+.|. ++..|+..  .++.   .+.++|..++....
T Consensus       145 ~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~  224 (353)
T PF00930_consen  145 SIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV  224 (353)
T ss_dssp             EEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred             ccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence                          23345555554221 11    1223457788888 55523333  3332   36677887766444


Q ss_pred             eEEeCCCCCCCe---EEEEEe-cCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEe
Q 040307          202 IIYENPVQDCPL---LRLEWN-KADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVA  275 (339)
Q Consensus       202 ~~~~~~~~~~~v---~~~~~~-p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~  275 (339)
                      ...+.  ....+   ....|. +.+..++.....+|. +|++++..  +.....+....-.|.. +.|++++..+..++.
T Consensus       225 ~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  225 VLEET--SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--GGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             EEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--SSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred             EEEec--CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--ccceeccccCceeecccceEcCCCCEEEEEec
Confidence            43332  22222   244554 645566666666665 35555554  3445566655667755 678888765666776


Q ss_pred             CC--CcEEEEEecCC-CCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          276 DD--SRALIWEVVGP-GYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       276 ~d--g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      .+  +.-.||.+... .           ..+..+......-..+.|||++++++-.+
T Consensus       301 ~~~p~~r~lY~v~~~~~-----------~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  301 GDNPGERHLYRVSLDSG-----------GEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             SGGTTSBEEEEEETTET-----------TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCCCCceEEEEEEeCCC-----------CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            53  35666666655 3           11222222221126999999999877543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=4.7e-09  Score=93.27  Aligned_cols=251  Identities=11%  Similarity=0.059  Sum_probs=161.5

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +....+|++|+-+   .+.|++|+    -.|.|++|+.+....+-..     ..|+.+|+-+.-+.++     .++.+.+
T Consensus      1100 ~~~~fTc~afs~~---~~hL~vG~----~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dg-----s~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG---TNHLAVGS----HAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDG-----STQLTSS 1162 (1516)
T ss_pred             cccceeeEEeecC---CceEEeee----ccceEEEEEccCccccccc-----cccccccccccccCCc-----ceeeeec
Confidence            4578899999999   99999999    6999999887766555553     6899999999999999     4554443


Q ss_pred             ---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee----ccCC
Q 040307           96 ---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV----AHDR  167 (339)
Q Consensus        96 ---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~  167 (339)
                         . ...+|+.... ..+.+.+...         .++.|+. ....-+.|.......+||++++.++.++-    +...
T Consensus      1163 s~S~PlsaLW~~~s~-~~~~Hsf~ed---------~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST-GGPRHSFDED---------KAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred             cccCchHHHhccccc-cCcccccccc---------ceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence               3 7889998762 2355566543         3788884 44444555666788999999988766642    1222


Q ss_pred             ceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307          168 EVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP  247 (339)
Q Consensus       168 ~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~  247 (339)
                      .-++..|+|.+.|+-  .||  .+||.|..+....+-..    ..-..-.|+| .|..++.-      -.|||+++ .+.
T Consensus      1232 ~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~f----t~~~~G~FHP-~g~eVIIN------SEIwD~RT-F~l 1295 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQF----TDYGGGGFHP-SGNEVIIN------SEIWDMRT-FKL 1295 (1516)
T ss_pred             hccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhh----eecccccccC-CCceEEee------chhhhhHH-HHH
Confidence            336778885444443  466  58999998655444332    1223447898 66666542      46899998 444


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEe--CC---------------CcEEEEEecCCCCCCCCCCCCCcccceeeeccc
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVA--DD---------------SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM  310 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d---------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (339)
                      ++.+..-  .-..|.|+..|. ++...-  .|               ...+-++....             .++..+...
T Consensus      1296 Lh~VP~L--dqc~VtFNstG~-VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dY-------------s~iaTi~v~ 1359 (1516)
T KOG1832|consen 1296 LHSVPSL--DQCAVTFNSTGD-VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDY-------------SDIATIPVD 1359 (1516)
T ss_pred             HhcCccc--cceEEEeccCcc-chhhhhhhhhhhhhhcccccccchhhhhcccccccc-------------ccceeeecc
Confidence            5444322  235678888884 544332  00               01122222222             245555566


Q ss_pred             ceeEEEEecCCCCceE
Q 040307          311 AEINVVRWSPLELDWI  326 (339)
Q Consensus       311 ~~i~~~~~~p~~~~l~  326 (339)
                      ..|.+++-.|...++.
T Consensus      1360 R~~~Dlct~~~D~~l~ 1375 (1516)
T KOG1832|consen 1360 RCLLDLCTEPTDSFLG 1375 (1516)
T ss_pred             cchhhhhcCCccceEE
Confidence            6778888888776554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=6.3e-07  Score=79.24  Aligned_cols=223  Identities=15%  Similarity=0.078  Sum_probs=141.9

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC  148 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v  148 (339)
                      ...+.|.+++.       ++|+-|+.  .|++++.+..   + .+...|.     ..      . .+|.++++|+.||+|
T Consensus        39 ~D~is~~av~~-------~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s-----~~------~-~~Gey~asCS~DGkv   95 (846)
T KOG2066|consen   39 NDAISCCAVHD-------KFFALGTHRGAVYLTTCQGN---P-KTNFDHS-----SS------I-LEGEYVASCSDDGKV   95 (846)
T ss_pred             hhHHHHHHhhc-------ceeeeccccceEEEEecCCc---c-ccccccc-----cc------c-cCCceEEEecCCCcE
Confidence            45677777764       68888873  8888887654   3 2233333     11      3 489999999999999


Q ss_pred             EEEECCCCeeeeeeeccCCceeEEEecC------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          149 VIWDIDREILETQLVAHDREVYDISWGG------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      .|-.+-+.+...++. ...++.+++++|      ...+++|+..| +.++.-+-....... ......++|.++.|   .
T Consensus        96 ~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W---~  169 (846)
T KOG2066|consen   96 VIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW---R  169 (846)
T ss_pred             EEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe---c
Confidence            999998888777775 567899999984      46899999888 777754322211111 12235689999999   5


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC---
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG---  293 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~---  293 (339)
                      |+++|-++.+|  |++||+.. .+.+..+.....      .-..+.|.++.  .|+.|=.| +|+|..++.......   
T Consensus       170 g~lIAWand~G--v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d-~v~i~~I~~~~s~~a~~~  243 (846)
T KOG2066|consen  170 GNLIAWANDDG--VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGD-SVKICSIKKRSSSEARSF  243 (846)
T ss_pred             CcEEEEecCCC--cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCC--eEEEecCC-eEEEEEEecccccccccc
Confidence            78999988887  99999987 433444433222      23467888875  45555544 799999883321000   


Q ss_pred             CCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          294 NGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      ...+...+.++..+....-|+.+++-  |..|+.-+.
T Consensus       244 ~~~~~~~V~~~s~f~~s~~isGla~l--g~qLv~L~f  278 (846)
T KOG2066|consen  244 RLPSLKKVEIVSHFETSFYISGLAPL--GDQLVVLGF  278 (846)
T ss_pred             cCCccceeeeEEEeeeeeeeeccccc--cceeEEEee
Confidence            01111122333344445556666654  334554443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.83  E-value=2e-07  Score=83.45  Aligned_cols=187  Identities=10%  Similarity=0.059  Sum_probs=136.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL  214 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  214 (339)
                      ++..++.|+....+..+|+++.+..+...-..+.|+-|+.+ +..+.+|...|+|.+-|.++.+....+. .  |.+.+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~-a--Hs~siS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFD-A--HSGSIS  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcCceeeeee-c--ccccee
Confidence            45677888888888899999888776665444457767665 7899999999999999999988555433 2  677887


Q ss_pred             EEEEecCCCCeEEEEeeCCCe--------EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          215 RLEWNKADPRFMATVGMDSNK--------VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~d~~~--------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      .+..   .|+.|++++...+.        |+|||+|+.. .+.-+.-+.++ .-+.|.|.-...+++++..|...+-|..
T Consensus       222 DfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  222 DFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             eeec---cCCeEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence            7665   67889888876542        7899999844 23333333333 5578899877789999999999999966


Q ss_pred             CCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          287 GPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ... .|.       ............+..+++++++..++.+-.+|.|.+|.
T Consensus       297 ~ls-NP~-------~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  297 TLS-NPP-------AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccC-CCc-------cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            555 100       01123333455699999999998777888999999994

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.81  E-value=1.6e-08  Score=55.72  Aligned_cols=38  Identities=29%  Similarity=0.526  Sum_probs=35.3

Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      +++.++.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            3578899999999999999998 6999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=9.4e-08  Score=78.81  Aligned_cols=208  Identities=17%  Similarity=0.115  Sum_probs=142.8

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC---eeeeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCCc
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE---ILETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDKE  198 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~  198 (339)
                      ..|+.+.-.  -.+++.+++.||.++.|.-..-   +.+..+..|-..+.+++.+ ++.++.+.+. |..++++|+.+-.
T Consensus        10 d~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen   10 DVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            556655543  5789999999999999986431   2344456788889999999 8888999777 9999999998876


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSV  274 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  274 (339)
                      ....+...    .....+.|.-..|   ..++++..+...+.++|-+... +....-.-|..+|..+.++|.+ ..+++.
T Consensus        88 minmiKL~----~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vSi  162 (558)
T KOG0882|consen   88 MINMIKLV----DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVSI  162 (558)
T ss_pred             hhhhcccc----cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceeec
Confidence            54333322    1122334432222   2555555554459999988755 3445556689999999999999 488899


Q ss_pred             eCCCcEEEEEecCCCCCCCCC---CCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          275 ADDSRALIWEVVGPGYRSGNG---GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       275 ~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...|.|.-|..+..-..|...   ...................++.|+|++..+.+.+.|..||++.
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence            899999999988522111100   0000011112223466789999999999888888999999875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.78  E-value=3.4e-09  Score=90.81  Aligned_cols=197  Identities=16%  Similarity=0.206  Sum_probs=133.3

Q ss_pred             CCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCee--eeeeeccCCceeEEEec--CCcEEEEEe----CCCcEEEEEC
Q 040307          124 SAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREIL--ETQLVAHDREVYDISWG--GFNVFASVS----GDCSVRVFDL  194 (339)
Q Consensus       124 ~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~----~d~~i~i~d~  194 (339)
                      ..+.|+++.-. +...++.|..+|.|-+-..+....  .....++..+.++++|+  +.++||+|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            45667776532 335788899999999988765442  22345678899999999  678888773    3578999999


Q ss_pred             CCCc----ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCe
Q 040307          195 RDKE----RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRR  270 (339)
Q Consensus       195 ~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  270 (339)
                      .+.-    ....+...  ......+++|.. +.+++.+|..... ++++|+|....  .........+..+..+|-...+
T Consensus       137 ~s~ltvPke~~~fs~~--~l~gqns~cwlr-d~klvlaGm~sr~-~~ifdlRqs~~--~~~svnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSS--TLDGQNSVCWLR-DTKLVLAGMTSRS-VHIFDLRQSLD--SVSSVNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             ccccCCCccccccccc--cccCcccccccc-Ccchhhcccccch-hhhhhhhhhhh--hhhhhhhhhcccceecCCCCCc
Confidence            8762    11111211  223455889984 7888888888888 99999995222  2222234567888999944357


Q ss_pred             EEEEeCCCcEEEEEe-cCCCCCCCCCCCCCcccceeeeccc-----ceeEEEEecCCCCceEEEe--cCCeEEEEeC
Q 040307          271 LCSVADDSRALIWEV-VGPGYRSGNGGPSGDVEPELCYQSM-----AEINVVRWSPLELDWIAIA--FVNKLQLLKV  339 (339)
Q Consensus       271 l~~~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~l~~~~--~d~~v~~w~v  339 (339)
                      +++-. ||.|.+||. ..-+            .|+....+.     ..+..++|+|....+++..  ..++|+++++
T Consensus       211 ~cs~~-dg~iAiwD~~rnie------------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIE------------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             eeccc-cCceeeccchhhhc------------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            77666 999999994 3333            344333332     3499999999987777654  4567888764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=5.9e-08  Score=53.40  Aligned_cols=38  Identities=29%  Similarity=0.488  Sum_probs=35.4

Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD  152 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d  152 (339)
                      +++.++.+|.     .+|++++|+| ++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~-----~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS-----SSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS-----SSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCC-----CcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            4778899998     9999999998 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.1e-06  Score=76.06  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=127.3

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      .+.++|++++..     .||.|+    -+|.|++++.+...   ..    .+.|...      ..+|     .++++|++
T Consensus        39 ~D~is~~av~~~-----~~~~Gt----H~g~v~~~~~~~~~---~~----~~~~s~~------~~~G-----ey~asCS~   91 (846)
T KOG2066|consen   39 NDAISCCAVHDK-----FFALGT----HRGAVYLTTCQGNP---KT----NFDHSSS------ILEG-----EYVASCSD   91 (846)
T ss_pred             hhHHHHHHhhcc-----eeeecc----ccceEEEEecCCcc---cc----ccccccc------ccCC-----ceEEEecC
Confidence            467888888866     899999    69999996655432   21    1445443      5566     89999995


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC----CCCEEEEEeCCCeEEEEECCCCe--eeeeeeccCCc
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF----DTRRVATCSVDTTCVIWDIDREI--LETQLVAHDRE  168 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~  168 (339)
                        +|.|-.+.+.+  ...++.-+      .++.+++++|.    ..+.+++|+.-| +.++.-+--.  ....+....++
T Consensus        92 DGkv~I~sl~~~~--~~~~~df~------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~  162 (846)
T KOG2066|consen   92 DGKVVIGSLFTDD--EITQYDFK------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP  162 (846)
T ss_pred             CCcEEEeeccCCc--cceeEecC------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence              89999888876  33334333      68999999983    257899999988 7776543211  11134556789


Q ss_pred             eeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          169 VYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP---VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       169 v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      |.++.|. ++++|-++.+| |++||+...+....+....   ....-...+.|.  +...|+.|-.|.  |+|..++.
T Consensus       163 I~~i~W~-g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~~~LVIGW~d~--v~i~~I~~  234 (846)
T KOG2066|consen  163 IHSIKWR-GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DEDRLVIGWGDS--VKICSIKK  234 (846)
T ss_pred             eEEEEec-CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CCCeEEEecCCe--EEEEEEec
Confidence            9999998 88999988776 8999999887555443321   112233567886  456677766654  88888873

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.64  E-value=5.7e-05  Score=70.37  Aligned_cols=200  Identities=18%  Similarity=0.248  Sum_probs=124.9

Q ss_pred             CCCceEEEEcCCCCCCCCCeE-EEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307           71 PYTPTNIAFFPSEETLNPDIV-ATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~l-a~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      .+.|.++.|..+..    .++ +++.+.|.+-|..+...+......        ..|.+++|+| |++.++..+..+++.
T Consensus        68 d~~i~s~~fl~d~~----~i~v~~~~G~iilvd~et~~~eivg~vd--------~GI~aaswS~-Dee~l~liT~~~tll  134 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTN----SICVITALGDIILVDPETLELEIVGNVD--------NGISAASWSP-DEELLALITGRQTLL  134 (1265)
T ss_pred             CcceEEEEEecccc----eEEEEecCCcEEEEcccccceeeeeecc--------CceEEEeecC-CCcEEEEEeCCcEEE
Confidence            36899999998884    343 344457777788877644444333        5799999998 999999988888877


Q ss_pred             EEECC----C-------------------Ceeeeeeec---------------------cCCceeEEEec-CCcEEEEE-
Q 040307          150 IWDID----R-------------------EILETQLVA---------------------HDREVYDISWG-GFNVFASV-  183 (339)
Q Consensus       150 i~d~~----~-------------------~~~~~~~~~---------------------~~~~v~~~~~~-~~~~l~~~-  183 (339)
                      +-+-.    .                   |+....+.+                     -.+.=+.+.|- +|.++++. 
T Consensus       135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~  214 (1265)
T KOG1920|consen  135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF  214 (1265)
T ss_pred             EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence            63320    0                   011111111                     01122458898 89899883 


Q ss_pred             ----eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCC--ceEEEecCC
Q 040307          184 ----SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTN--PVVVLSKHE  255 (339)
Q Consensus       184 ----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~--~~~~~~~~~  255 (339)
                          ...+.|++||-. +. .......  ..+.-.+++|-| .|..+++-..+..  .|.+|.-+....  ....+....
T Consensus       215 ~~~~~~~RkirV~drE-g~-Lns~se~--~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de  289 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GA-LNSTSEP--VEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE  289 (1265)
T ss_pred             EeccCCceeEEEeccc-ch-hhcccCc--ccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence                233789999977 32 2222222  223456899999 8898888544332  288887543211  111122233


Q ss_pred             CCeeEEEeccCCCCeEEE---EeCCCcEEEEEecCCC
Q 040307          256 GSVNGISWAPLYGRRLCS---VADDSRALIWEVVGPG  289 (339)
Q Consensus       256 ~~v~~~~~~p~~~~~l~~---~~~dg~v~iwd~~~~~  289 (339)
                      ..|..++|+.+++ +|++   ......|++|-+.+..
T Consensus       290 ~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  290 KEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence            4589999999994 8877   4445559999887754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.63  E-value=0.00013  Score=63.23  Aligned_cols=133  Identities=14%  Similarity=0.178  Sum_probs=88.5

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE----eCCCeE----EEEECCCCee----eeeeec
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC----SVDTTC----VIWDIDREIL----ETQLVA  164 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----~~d~~v----~i~d~~~~~~----~~~~~~  164 (339)
                      .+.++.+...+.+.+......      ....++.|+-.++..+.+.    +.+|.+    .+|++...+.    +..+ .
T Consensus       185 Nl~L~~~~~~klEvL~yirTE------~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-p  257 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTE------NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-P  257 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEec------CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-e
Confidence            344444444443344333332      2345777875455555553    234433    3566654432    2222 4


Q ss_pred             cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      ....+.+++++ +.+.++.|+.||.|.+||...+.....  .   ..-.++.++|+| +|.++++|+..|. +.+||+.-
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k---a~~~P~~iaWHp-~gai~~V~s~qGe-lQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K---AEFIPTLIAWHP-DGAIFVVGSEQGE-LQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e---ecccceEEEEcC-CCcEEEEEcCCce-EEEEEeec
Confidence            67789999999 788999999999999999987643222  1   234678999999 9999999999998 99999865

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.61  E-value=6.8e-05  Score=65.06  Aligned_cols=255  Identities=11%  Similarity=-0.033  Sum_probs=135.5

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeE
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELK  111 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~  111 (339)
                      ..+.+++    .++.+.-+  +.++++..-.    ......+.+--.-.++     .+++..++ .+.-+|.++++  .+
T Consensus       121 ~~v~v~~----~~g~l~al--d~~tG~~~W~----~~~~~~~~ssP~v~~~-----~v~v~~~~g~l~ald~~tG~--~~  183 (394)
T PRK11138        121 GKVYIGS----EKGQVYAL--NAEDGEVAWQ----TKVAGEALSRPVVSDG-----LVLVHTSNGMLQALNESDGA--VK  183 (394)
T ss_pred             CEEEEEc----CCCEEEEE--ECCCCCCccc----ccCCCceecCCEEECC-----EEEEECCCCEEEEEEccCCC--Ee
Confidence            3455666    57888884  4444443331    1112222211111144     45555445 89999999887  33


Q ss_pred             EEeecCCC----ccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC----Cc---eeEEEec---CC
Q 040307          112 SLLNSNKT----SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD----RE---VYDISWG---GF  177 (339)
Q Consensus       112 ~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~---v~~~~~~---~~  177 (339)
                      -.......    .....++    .   .+..++.++.+|.+..+|..+++.+.......    ..   ...+.-+   .+
T Consensus       184 W~~~~~~~~~~~~~~~sP~----v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~  256 (394)
T PRK11138        184 WTVNLDVPSLTLRGESAPA----T---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG  256 (394)
T ss_pred             eeecCCCCcccccCCCCCE----E---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC
Confidence            33322110    0000121    1   12356677789999999999988665542110    00   0011111   15


Q ss_pred             cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC-C
Q 040307          178 NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-G  256 (339)
Q Consensus       178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~  256 (339)
                      ..++.++.++.+..+|..+++..=.. ..    .....+..   .+..+++++.++. +..+|..+ ++.+-+...-. .
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~W~~-~~----~~~~~~~~---~~~~vy~~~~~g~-l~ald~~t-G~~~W~~~~~~~~  326 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIVWKR-EY----GSVNDFAV---DGGRIYLVDQNDR-VYALDTRG-GVELWSQSDLLHR  326 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEEEee-cC----CCccCcEE---ECCEEEEEcCCCe-EEEEECCC-CcEEEcccccCCC
Confidence            56777778999999999988632111 11    11112222   3456777778887 99999876 33333222111 1


Q ss_pred             CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEE-EEecCCCCceEEEecCCeE
Q 040307          257 SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINV-VRWSPLELDWIAIAFVNKL  334 (339)
Q Consensus       257 ~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~-~~~~p~~~~l~~~~~d~~v  334 (339)
                      ...+...  .+ ..|+.++.+|.+.+.|..+++             .+.... ....+.+ ... .++ .|+.++.||.|
T Consensus       327 ~~~sp~v--~~-g~l~v~~~~G~l~~ld~~tG~-------------~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l  388 (394)
T PRK11138        327 LLTAPVL--YN-GYLVVGDSEGYLHWINREDGR-------------FVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTV  388 (394)
T ss_pred             cccCCEE--EC-CEEEEEeCCCEEEEEECCCCC-------------EEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceE
Confidence            1222222  13 378888999999999998877             332221 1122221 122 233 68888999999


Q ss_pred             EEEeC
Q 040307          335 QLLKV  339 (339)
Q Consensus       335 ~~w~v  339 (339)
                      ..+++
T Consensus       389 ~~~~~  393 (394)
T PRK11138        389 YAITR  393 (394)
T ss_pred             EEEeC
Confidence            88763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.60  E-value=0.00011  Score=58.85  Aligned_cols=214  Identities=11%  Similarity=-0.044  Sum_probs=122.2

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG  176 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~  176 (339)
                      .|..||..+++  .+-......  .. .........  ++..+++++.++.|..||..+++.+..+.. ...+.......
T Consensus         4 ~l~~~d~~tG~--~~W~~~~~~--~~-~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~   75 (238)
T PF13360_consen    4 TLSALDPRTGK--ELWSYDLGP--GI-GGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD   75 (238)
T ss_dssp             EEEEEETTTTE--EEEEEECSS--SC-SSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE
T ss_pred             EEEEEECCCCC--EEEEEECCC--CC-CCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec
Confidence            67788887776  333332210  00 222221221  456777778999999999999998877754 33222212223


Q ss_pred             CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC-CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC
Q 040307          177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD-CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE  255 (339)
Q Consensus       177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~  255 (339)
                      ++.++.+..++.++.+|..+++..-......... .......... .+..++++..++. |..+|.++ ++.+.......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-l~~~d~~t-G~~~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGK-LVALDPKT-GKLLWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSE-EEEEETTT-TEEEEEEESST
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCc-EEEEecCC-CcEEEEeecCC
Confidence            5566667788899999999988554422221111 1222333332 4677777777777 99999987 55666665533


Q ss_pred             CC----------e-eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          256 GS----------V-NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       256 ~~----------v-~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      ..          + ..+.+. ++  .+..++.++.+.-+|+.+++             ..-... ...+..+ ..+.+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~d~~tg~-------------~~w~~~-~~~~~~~-~~~~~~~  214 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAVDLATGE-------------KLWSKP-ISGIYSL-PSVDGGT  214 (238)
T ss_dssp             T-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEEETTTTE-------------EEEEEC-SS-ECEC-EECCCTE
T ss_pred             CCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEEECCCCC-------------EEEEec-CCCccCC-ceeeCCE
Confidence            22          1 222222 33  66667767753333888776             222112 2223331 2356666


Q ss_pred             eEEEecCCeEEEEeC
Q 040307          325 WIAIAFVNKLQLLKV  339 (339)
Q Consensus       325 l~~~~~d~~v~~w~v  339 (339)
                      ++.++.++.|..|++
T Consensus       215 l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  215 LYVTSSDGRLYALDL  229 (238)
T ss_dssp             EEEEETTTEEEEEET
T ss_pred             EEEEeCCCEEEEEEC
Confidence            777778999998874

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.60  E-value=0.00016  Score=57.48  Aligned_cols=197  Identities=9%  Similarity=0.037  Sum_probs=111.8

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc--
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKER--  199 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--  199 (339)
                      ..+.+++|+|.++.++++....+.|..++. +++.++.+.-. .+..-.|++. ++.++++.-.++.+.++++.....  
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            579999999955678888888999998897 47777776433 2567889999 566666555689999999844321  


Q ss_pred             -e---eeEE-eC-CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC--CCCceEEE--------ecCCCCeeEEEe
Q 040307          200 -S---TIIY-EN-PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF--PTNPVVVL--------SKHEGSVNGISW  263 (339)
Q Consensus       200 -~---~~~~-~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~--~~~~~~~~--------~~~~~~v~~~~~  263 (339)
                       .   ..+. .. ..+...+-.++|+|..++++ ++-...- ..+|.++.  ....+...        ......+.++++
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCC-hhhEEEccccCccceeeccccccccccceeccccceEE
Confidence             1   1111 11 12445689999999444444 4555554 66676653  11111111        112346789999


Q ss_pred             ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee---c--c-----cceeEEEEecCCCCceEEEecCCe
Q 040307          264 APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY---Q--S-----MAEINVVRWSPLELDWIAIAFVNK  333 (339)
Q Consensus       264 ~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~--~-----~~~i~~~~~~p~~~~l~~~~~d~~  333 (339)
                      +|..+.+++....+..|..+|. .+.             ++...   .  |     -...-.|+|.++|. |..++.-+.
T Consensus       179 ~p~t~~lliLS~es~~l~~~d~-~G~-------------~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNl  243 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLELDR-QGR-------------VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNL  243 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEEE-T-T---------------EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTE
T ss_pred             cCCCCeEEEEECCCCeEEEECC-CCC-------------EEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCce
Confidence            9987667777778888888883 333             22111   1  1     13577899999995 777777777


Q ss_pred             EEEEe
Q 040307          334 LQLLK  338 (339)
Q Consensus       334 v~~w~  338 (339)
                      ..+|+
T Consensus       244 fy~f~  248 (248)
T PF06977_consen  244 FYRFE  248 (248)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            66653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=7.6e-07  Score=72.58  Aligned_cols=162  Identities=12%  Similarity=0.071  Sum_probs=106.9

Q ss_pred             EEEEECCCCeeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          148 CVIWDIDREILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      +++.+..+.+....+..+...|.+++|+|  ..++..++.+..|+|.|+++..........    ..+++++|.-++.++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceeeeeccCCcce
Confidence            55555555555555667888999999994  447889999999999999998744443322    689999999878888


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceEEEecC--CCCeeEEEe------ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307          226 MATVGMDSNKVVVLDIRFPTNPVVVLSKH--EGSVNGISW------APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       226 l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~------~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  297 (339)
                      |++|-.+|. |.|||++.+..++..+.+.  ..+|..++.      .+.+ .+|+....+  +..|++.....       
T Consensus       251 IYaGl~nG~-VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~-------  319 (463)
T KOG1645|consen  251 IYAGLQNGM-VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE-------  319 (463)
T ss_pred             eEEeccCce-EEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc-------
Confidence            888888888 9999999988777666542  234444433      2334 255555543  56777766551       


Q ss_pred             CCcccceeeecccceeEEEEecCCCCceE
Q 040307          298 SGDVEPELCYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  326 (339)
                        ...+....+..+...+++.++-.+.++
T Consensus       320 --~~p~vlele~pG~cismqy~~~snh~l  346 (463)
T KOG1645|consen  320 --CLPCVLELEPPGICISMQYHGVSNHLL  346 (463)
T ss_pred             --CCCcccccCCCcceeeeeecCccceEE
Confidence              122333334455555666665444443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.55  E-value=0.00025  Score=57.46  Aligned_cols=232  Identities=13%  Similarity=0.069  Sum_probs=136.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCC-eEEEEecCCCCCcccceeeEeecCCCC--ceEEEEcCCCCCCCCCeEE
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSN-KIELVNFNPETSDFSADNRLIFDHPYT--PTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~~~~~~la   92 (339)
                      .+.....++.+|.  .+..++.+-    ..| ...+||..  ++....  .+ ....+.  -=...||+|+     ++|.
T Consensus         3 lP~RgH~~a~~p~--~~~avafaR----RPG~~~~v~D~~--~g~~~~--~~-~a~~gRHFyGHg~fs~dG-----~~Ly   66 (305)
T PF07433_consen    3 LPARGHGVAAHPT--RPEAVAFAR----RPGTFALVFDCR--TGQLLQ--RL-WAPPGRHFYGHGVFSPDG-----RLLY   66 (305)
T ss_pred             CCccccceeeCCC--CCeEEEEEe----CCCcEEEEEEcC--CCceee--EE-cCCCCCEEecCEEEcCCC-----CEEE
Confidence            3456678888994  267777777    344 45564443  333332  11 111111  1134799999     6766


Q ss_pred             EeC-C------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe------------------CCCe
Q 040307           93 TSG-D------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS------------------VDTT  147 (339)
Q Consensus        93 ~~~-~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~d~~  147 (339)
                      +.- +      .|-|||.. .....+..+..+-     -.-..+.+.| +++.|+.+.                  .+.+
T Consensus        67 tTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~G-----IGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   67 TTENDYETGRGVIGVYDAA-RGYRRIGEFPSHG-----IGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             EeccccCCCcEEEEEEECc-CCcEEEeEecCCC-----cChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            652 1      89999998 3344667777665     3344677888 887777653                  2335


Q ss_pred             EEEEECCCCeeeee--e--eccCCceeEEEec-CCcEEEEEeCCCc-------EEEEECCCCcceeeEEeC----CCCCC
Q 040307          148 CVIWDIDREILETQ--L--VAHDREVYDISWG-GFNVFASVSGDCS-------VRVFDLRDKERSTIIYEN----PVQDC  211 (339)
Q Consensus       148 v~i~d~~~~~~~~~--~--~~~~~~v~~~~~~-~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~----~~~~~  211 (339)
                      +.+.|..+++.+.+  +  .-|...|..+++. ++..++..-..+.       |-+++....  ...+...    ..-..
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~  217 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNG  217 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCC
Confidence            66677778876665  3  2366789999998 5544443332221       223332221  1111110    01236


Q ss_pred             CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307          212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR  279 (339)
Q Consensus       212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  279 (339)
                      .+-+|++++ ++..+++.+-.++.+.+||..+ +..+....  -..+..++-.+++  ++++.+. |.
T Consensus       218 Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~--l~D~cGva~~~~~--f~~ssG~-G~  278 (305)
T PF07433_consen  218 YIGSIAADR-DGRLIAVTSPRGGRVAVWDAAT-GRLLGSVP--LPDACGVAPTDDG--FLVSSGQ-GQ  278 (305)
T ss_pred             ceEEEEEeC-CCCEEEEECCCCCEEEEEECCC-CCEeeccc--cCceeeeeecCCc--eEEeCCC-cc
Confidence            789999997 8888877777777699999887 54444433  2346677766665  5555543 44

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=7.8e-05  Score=67.05  Aligned_cols=208  Identities=10%  Similarity=0.135  Sum_probs=127.0

Q ss_pred             EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcCCCCCCCCCeEEEeC-C-----
Q 040307           24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFPSEETLNPDIVATSG-D-----   96 (339)
Q Consensus        24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~~~la~~~-~-----   96 (339)
                      +|++.   +..++.|+    .+|.|.+  ++..-....   .+ ..++.. |..+....+.     .+|++-+ |     
T Consensus        30 c~~s~---~~~vvigt----~~G~V~~--Ln~s~~~~~---~f-qa~~~siv~~L~~~~~~-----~~L~sv~Ed~~~np   91 (933)
T KOG2114|consen   30 CCSSS---TGSVVIGT----ADGRVVI--LNSSFQLIR---GF-QAYEQSIVQFLYILNKQ-----NFLFSVGEDEQGNP   91 (933)
T ss_pred             EEcCC---CceEEEee----ccccEEE--ecccceeee---hh-eecchhhhhHhhcccCc-----eEEEEEeecCCCCc
Confidence            57778   88999999    6999988  554322211   11 233444 5555444433     5776654 2     


Q ss_pred             -cEEEEeecCCc----ceeE--EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC--CCeeee-ee-ecc
Q 040307           97 -SLRLWEIHDDR----TELK--SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID--REILET-QL-VAH  165 (339)
Q Consensus        97 -~i~iw~~~~~~----~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~--~~~~~~-~~-~~~  165 (339)
                       .++||+++..+    +.+.  ..+..+....-..++.+++.+. +-+.+|+|-.+|.|..+.-+  ..+-.+ .+ ...
T Consensus        92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~  170 (933)
T KOG2114|consen   92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG  170 (933)
T ss_pred             eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence             69999997642    2233  1222222222236889999996 78899999999999988532  111111 11 234


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..+|+.+.+. ++..++.+..-..|.+|.+.... +.. .....+...+.|..+++..++ +++++...  +.+||... 
T Consensus       171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~-~~ld~~G~~lnCss~~~~t~q-fIca~~e~--l~fY~sd~-  244 (933)
T KOG2114|consen  171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSL-KVLDNNGISLNCSSFSDGTYQ-FICAGSEF--LYFYDSDG-  244 (933)
T ss_pred             CCCceeeEEecCCceeEEEEecceeEEEEecCCC-cce-eeeccCCccceeeecCCCCcc-EEEecCce--EEEEcCCC-
Confidence            5789999999 66653333445679999998554 222 223346788999999874443 44444444  99999875 


Q ss_pred             CCceEEEe-cCCC
Q 040307          245 TNPVVVLS-KHEG  256 (339)
Q Consensus       245 ~~~~~~~~-~~~~  256 (339)
                      ..+...+. +|..
T Consensus       245 ~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  245 RGPCFAFEVGEKK  257 (933)
T ss_pred             cceeeeecCCCeE
Confidence            44445555 5543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=6e-05  Score=67.74  Aligned_cols=195  Identities=12%  Similarity=0.097  Sum_probs=123.0

Q ss_pred             EEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCC-EEEEEEcCCCCCEEEEEeCCC-----eEEEE
Q 040307           78 AFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSA-ITSFDWAGFDTRRVATCSVDT-----TCVIW  151 (339)
Q Consensus        78 ~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~d~-----~v~i~  151 (339)
                      .|++.+     ..++.|+...+||-++..- .....++.+.     .. |..+ |.-...++|++-++|+     .|++|
T Consensus        30 c~~s~~-----~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~-----~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   30 CCSSST-----GSVVIGTADGRVVILNSSF-QLIRGFQAYE-----QSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             EEcCCC-----ceEEEeeccccEEEecccc-eeeehheecc-----hhhhhHh-hcccCceEEEEEeecCCCCceEEEEe
Confidence            356777     6888887655555555543 2446666655     44 3333 3322346788877765     48999


Q ss_pred             ECCCC------eee---eeee----ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCC--CcceeeEEeCCCCCCCeEE
Q 040307          152 DIDRE------ILE---TQLV----AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRD--KERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       152 d~~~~------~~~---~~~~----~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~v~~  215 (339)
                      +++.-      .++   +.+.    ....++.+++.+ +-+.+|+|-.+|.|.++.-.-  .+....... ...+.+|+.
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITg  176 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITG  176 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCcee
Confidence            98643      223   1111    134578899999 788999999999999885321  111122222 224679999


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +++.. ++..++....... |.+|.+.........+..|...+++.++++..+ .+++++ +..+.+|+....+
T Consensus       177 L~~~~-d~~s~lFv~Tt~~-V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  177 LALRS-DGKSVLFVATTEQ-VMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             eEEec-CCceeEEEEecce-eEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEec-CceEEEEcCCCcc
Confidence            99985 6665333333344 999999853322445778888999999998864 344444 3578999988766

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.53  E-value=0.0002  Score=62.16  Aligned_cols=221  Identities=15%  Similarity=0.173  Sum_probs=116.8

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      ...-.+..+.++|++     ++++.+++ .-.||......  ...  .        +....+.|.+ + +.+|+-...++
T Consensus        30 ~~~~~p~~ls~npng-----r~v~V~g~geY~iyt~~~~r--~k~--~--------G~g~~~vw~~-~-n~yAv~~~~~~   90 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNG-----RFVLVCGDGEYEIYTALAWR--NKA--F--------GSGLSFVWSS-R-NRYAVLESSST   90 (443)
T ss_dssp             E-SS--SEEEE-TTS-----SEEEEEETTEEEEEETTTTE--EEE--E--------EE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred             CCCcCCeeEEECCCC-----CEEEEEcCCEEEEEEccCCc--ccc--c--------CceeEEEEec-C-ccEEEEECCCe
Confidence            445568999999999     78888776 77777733322  222  1        2345788986 4 45777777889


Q ss_pred             EEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          148 CVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      |.|+.--+.+....+.. ...+..+-.  |.+|...+.+ .|.+||..+++....+..     .+|..+.|++ ++++++
T Consensus        91 I~I~kn~~~~~~k~i~~-~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~-~g~~va  160 (443)
T PF04053_consen   91 IKIYKNFKNEVVKSIKL-PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSD-DGELVA  160 (443)
T ss_dssp             EEEEETTEE-TT------SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-T-TSSEEE
T ss_pred             EEEEEcCccccceEEcC-CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEEC-CCCEEE
Confidence            99964322322223332 122333322  7777777655 799999999875554432     2489999997 899999


Q ss_pred             EEeeCCCeEEEEecCCC--------C--CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307          228 TVGMDSNKVVVLDIRFP--------T--NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~--------~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  297 (339)
                      ..+.+.  +.+++....        +  ..+..+..-...|.+..|..+  -++.|...  .++.  +-.++        
T Consensus       161 l~t~~~--i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~Ge--------  224 (443)
T PF04053_consen  161 LVTKDS--IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVNGE--------  224 (443)
T ss_dssp             EE-S-S--EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EETTE--------
T ss_pred             EEeCCe--EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEcCC--------
Confidence            888775  777765431        0  123444333568999999876  35555443  6666  55554        


Q ss_pred             CCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          298 SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                           ...+..-..++.=+...|....++....|+.+..+.+
T Consensus       225 -----~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  225 -----TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             -----EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             -----cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence                 2233333456666777776666777778877776643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.6e-06  Score=71.74  Aligned_cols=205  Identities=11%  Similarity=0.100  Sum_probs=143.4

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecC-CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHD-DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      +-|.+.|+.+.-.-.      +++.+++ | .++.|.-.. ...+.+..+..|-     ..|.+++.+- ++-++.+.+.
T Consensus         6 ymhrd~i~hv~~tka------~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL-----~~I~sl~~S~-dg~L~~Sv~d   73 (558)
T KOG0882|consen    6 YMHRDVITHVFPTKA------KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL-----GVILSLAVSY-DGWLFRSVED   73 (558)
T ss_pred             hcccceeeeEeeehh------heEEeeecchhhhhcCCCCccceeehhhhHHHH-----HHHHhhhccc-cceeEeeccC
Confidence            568888888765543      5888887 5 999998655 2234555566666     7888888885 8899999777


Q ss_pred             -CCeEEEEECCCCeeeeeeeccCCceeEEEec--CC----cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307          145 -DTTCVIWDIDREILETQLVAHDREVYDISWG--GF----NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE  217 (339)
Q Consensus       145 -d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  217 (339)
                       |..++++|+++-..+.-++. ......+.|.  ++    .+-++...++.+.++|-+...+....+.. .|..+|..+.
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-lH~sPV~~i~  151 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-LHFSPVKKIR  151 (558)
T ss_pred             cccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc-cccCceEEEE
Confidence             99999999987654332221 1111223333  44    23334456789999998877644443332 3778999999


Q ss_pred             EecCCCCeEEEEeeCCCeEEEEecCCC-CCceE-------------EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          218 WNKADPRFMATVGMDSNKVVVLDIRFP-TNPVV-------------VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~-~~~~~-------------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      ++| .+..+++....|. |.-|..... +.|..             .+.--+....++.|+|++ ..+.+-+.|..|+++
T Consensus       152 y~q-a~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F  228 (558)
T KOG0882|consen  152 YNQ-AGDSAVSIDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGF  228 (558)
T ss_pred             eec-cccceeeccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEE
Confidence            997 8888888888888 999987631 11111             111124467899999999 699999999999999


Q ss_pred             EecCCC
Q 040307          284 EVVGPG  289 (339)
Q Consensus       284 d~~~~~  289 (339)
                      ++.+++
T Consensus       229 ~~KtGk  234 (558)
T KOG0882|consen  229 VFKTGK  234 (558)
T ss_pred             Eeccch
Confidence            999887

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=1.9e-07  Score=83.45  Aligned_cols=161  Identities=14%  Similarity=0.172  Sum_probs=114.2

Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC  187 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  187 (339)
                      +....+..+.     ...+|++|+. +.+.|+.|+..|.|+++++.+|........|.+.|+.+.-+ ++..+++.+.-.
T Consensus      1092 r~w~~frd~~-----~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDET-----ALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             ccchhhhccc-----cceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence            3445555555     7889999996 88999999999999999999999888999999999999999 777766655433


Q ss_pred             --cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---CCCCeeEEE
Q 040307          188 --SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---HEGSVNGIS  262 (339)
Q Consensus       188 --~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~  262 (339)
                        -..+|++.+.-.+...+.      .-.++.|+. .-+.-+.|+.... ..+||+.+.......+..   ....-+...
T Consensus      1166 ~PlsaLW~~~s~~~~~Hsf~------ed~~vkFsn-~~q~r~~gt~~d~-a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFD------EDKAVKFSN-SLQFRALGTEADD-ALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             CchHHHhccccccCcccccc------ccceeehhh-hHHHHHhcccccc-eEEEecccCcHHHHhcCcchhhhhhccccc
Confidence              467899887443333332      345788875 4444445555555 999999984433332332   122346789


Q ss_pred             eccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          263 WAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |+|+. .+++-   ||  .+||++..+
T Consensus      1238 FsP~D-~LIln---dG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1238 FSPCD-TLILN---DG--VLWDVRIPE 1258 (1516)
T ss_pred             cCCCc-ceEee---Cc--eeeeeccHH
Confidence            99998 46653   34  489988765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.51  E-value=0.0004  Score=58.48  Aligned_cols=222  Identities=11%  Similarity=0.060  Sum_probs=126.7

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEE---EEcCC---CCCEEEEEeC----------CCeEEEEECCCC----
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSF---DWAGF---DTRRVATCSV----------DTTCVIWDIDRE----  156 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~---~~~~l~~~~~----------d~~v~i~d~~~~----  156 (339)
                      .|++.|..+.+......+...      ..++++   .+...   ...+|+.|+.          .|.|.++++...    
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~   76 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPN------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN   76 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETT------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred             EEEEEeCCCCeEEEEEECCCC------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence            467777766652233333332      234433   33321   1467777753          289999999874    


Q ss_pred             eeeeee--eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          157 ILETQL--VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       157 ~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      ..+..+  ....++|++++-..+. |+.+. .+.|.+|++...+ ........  ....+.++...   ++++++|....
T Consensus        77 ~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~--~~~~i~sl~~~---~~~I~vgD~~~  149 (321)
T PF03178_consen   77 FKLKLIHSTEVKGPVTAICSFNGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD--SPFYITSLSVF---KNYILVGDAMK  149 (321)
T ss_dssp             -EEEEEEEEEESS-EEEEEEETTE-EEEEE-TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEE---TTEEEEEESSS
T ss_pred             eEEEEEEEEeecCcceEhhhhCCE-EEEee-cCEEEEEEccCcccchhhheec--ceEEEEEEecc---ccEEEEEEccc
Confidence            122222  2457889999877555 44443 4789999999888 33332222  23466777664   46888888888


Q ss_pred             CeEEEEecCCCCCceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC-cccceeeeccc
Q 040307          234 NKVVVLDIRFPTNPVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG-DVEPELCYQSM  310 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~  310 (339)
                      + +.++..+.....+..+..  ....++++.|-+++ ..++.+..+|.+.++..........   ... .+.....+...
T Consensus       150 s-v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~---~~~~~L~~~~~f~lg  224 (321)
T PF03178_consen  150 S-VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSR---DGDPKLERISSFHLG  224 (321)
T ss_dssp             S-EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTT---TTTTBEEEEEEEE-S
T ss_pred             C-EEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccc---cccccceeEEEEECC
Confidence            8 888865542332333322  34568899999887 4999999999999999975431100   000 22233444556


Q ss_pred             ceeEEE---EecCC--CC------ceEEEecCCeEEE
Q 040307          311 AEINVV---RWSPL--EL------DWIAIAFVNKLQL  336 (339)
Q Consensus       311 ~~i~~~---~~~p~--~~------~l~~~~~d~~v~~  336 (339)
                      ..|+++   +..|.  +.      .++.++.+|.|-.
T Consensus       225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             CccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            778888   66662  22      2777888888763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.50  E-value=0.00016  Score=61.97  Aligned_cols=268  Identities=13%  Similarity=0.077  Sum_probs=132.1

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcE
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSL   98 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i   98 (339)
                      .|.++.|+++   ..-||+|.    ..|.|.||+|......-..  .  .   ..-....+.+-.-+..+..|.--++.+
T Consensus         3 ~v~~vs~a~~---t~Elav~~----~~GeVv~~k~~~n~~~~~~--~--~---~~~~~~~~~~~~~~~~~~~l~di~~r~   68 (395)
T PF08596_consen    3 SVTHVSFAPE---TLELAVGL----ESGEVVLFKFGKNQNYGNR--E--Q---PPDLDYNFRRFSLNNSPGKLTDISDRA   68 (395)
T ss_dssp             -EEEEEEETT---TTEEEEEE----TTS-EEEEEEEE-------------------------S--GGGSS-SEEE-GGG-
T ss_pred             eEEEEEecCC---CceEEEEc----cCCcEEEEEcccCCCCCcc--C--C---CcccCcccccccccCCCcceEEehhhC
Confidence            5889999999   88899999    7999999999764322100  0  0   001111111111000002222221100


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--ec------cCCcee
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VA------HDREVY  170 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~------~~~~v~  170 (339)
                      -- ++.. .+.+...++...     ++|++++.|  +=.++|.|.++|.+.|.|++....+..-  ..      ....++
T Consensus        69 ~~-~~~~-gf~P~~l~~~~~-----g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt  139 (395)
T PF08596_consen   69 PP-SLKE-GFLPLTLLDAKQ-----GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT  139 (395)
T ss_dssp             -T-T-SE-EEEEEEEE---S------SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE
T ss_pred             Cc-cccc-ccCchhheeccC-----CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee
Confidence            00 0001 133555555545     899999997  6789999999999999999887755542  12      234678


Q ss_pred             EEEec------C---CcEEEEEeCCCcEEEEECCC--Cc-ceeeEEeC-CCCCCCeEEEE-EecCC--------------
Q 040307          171 DISWG------G---FNVFASVSGDCSVRVFDLRD--KE-RSTIIYEN-PVQDCPLLRLE-WNKAD--------------  222 (339)
Q Consensus       171 ~~~~~------~---~~~l~~~~~d~~i~i~d~~~--~~-~~~~~~~~-~~~~~~v~~~~-~~p~~--------------  222 (339)
                      ++.|.      +   .-.+++|...|.+.+|.+--  .. ........ ..+..++..+. ++.++              
T Consensus       140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l  219 (395)
T PF08596_consen  140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL  219 (395)
T ss_dssp             EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred             EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence            88887      1   24788889999999998752  11 11111111 12445665554 32211              


Q ss_pred             ------CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec-----cCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307          223 ------PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA-----PLYGRRLCSVADDSRALIWEVVGPGYR  291 (339)
Q Consensus       223 ------~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~~~~~dg~v~iwd~~~~~~~  291 (339)
                            ..++++++. .. ++++...+ .+...+.....-....+.+-     ..+ ..|++-..+|.+++|.+...+  
T Consensus       220 ~~g~~i~g~vVvvSe-~~-irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lk--  293 (395)
T PF08596_consen  220 SKGISIPGYVVVVSE-SD-IRVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLK--  293 (395)
T ss_dssp             GGT----EEEEEE-S-SE-EEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT----
T ss_pred             ccCCCcCcEEEEEcc-cc-eEEEeCCC-CcccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCch--
Confidence                  124444444 33 99998876 33333333222233344553     234 688888899999999999887  


Q ss_pred             CCCCCCCCcccceeeec-----ccceeEEEEecCCCCceE
Q 040307          292 SGNGGPSGDVEPELCYQ-----SMAEINVVRWSPLELDWI  326 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~p~~~~l~  326 (339)
                                 .+....     ....+....++++|..++
T Consensus       294 -----------ei~~~~l~~~~d~~~~~~ssis~~Gdi~~  322 (395)
T PF08596_consen  294 -----------EIKSVSLPPPLDSRRLSSSSISRNGDIFY  322 (395)
T ss_dssp             -----------EEEEEE-SS---HHHHTT-EE-TTS-EEE
T ss_pred             -----------HhhcccCCCccccccccccEECCCCCEEE
Confidence                       332111     223455677788887433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.43  E-value=0.00044  Score=55.46  Aligned_cols=207  Identities=15%  Similarity=0.080  Sum_probs=117.3

Q ss_pred             CCCceeeeeeccCCeeEEE--eeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307            6 EKKPGVHTYMAQWPISTVA--WSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE   83 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~--~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~   83 (339)
                      .+++.+.++....+.....  ..++   +..+.+++    .++.|..|+  ..+++..-  .  ......+.......++
T Consensus        11 ~tG~~~W~~~~~~~~~~~~~~~~~~---~~~v~~~~----~~~~l~~~d--~~tG~~~W--~--~~~~~~~~~~~~~~~~   77 (238)
T PF13360_consen   11 RTGKELWSYDLGPGIGGPVATAVPD---GGRVYVAS----GDGNLYALD--AKTGKVLW--R--FDLPGPISGAPVVDGG   77 (238)
T ss_dssp             TTTEEEEEEECSSSCSSEEETEEEE---TTEEEEEE----TTSEEEEEE--TTTSEEEE--E--EECSSCGGSGEEEETT
T ss_pred             CCCCEEEEEECCCCCCCccceEEEe---CCEEEEEc----CCCEEEEEE--CCCCCEEE--E--eeccccccceeeeccc
Confidence            3577777776633233333  3445   55666666    589999955  44444443  1  2223333222333444


Q ss_pred             CCCCCCeEEEeCC-cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           84 ETLNPDIVATSGD-SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        84 ~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                           .+++...+ .++.+|..+++  .+... ................+   .++.++.+..++.|..+|+++|+.+..
T Consensus        78 -----~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen   78 -----RVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             -----EEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             -----ccccccceeeeEecccCCcc--eeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEE
Confidence                 56655555 89999988887  44432 22110000011122222   467888888899999999999998877


Q ss_pred             eeccCCce-----------eEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          162 LVAHDREV-----------YDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       162 ~~~~~~~v-----------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                      +.......           ..+.+.++ .+..++.++.+..+|+.+++..   ...+  ...+..+ ..+ .+..|++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~---w~~~--~~~~~~~-~~~-~~~~l~~~~  219 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL---WSKP--ISGIYSL-PSV-DGGTLYVTS  219 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE---EEEC--SS-ECEC-EEC-CCTEEEEEE
T ss_pred             eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE---EEec--CCCccCC-cee-eCCEEEEEe
Confidence            75533221           22223334 6777777776444499998833   2221  1122221 233 667777777


Q ss_pred             eCCCeEEEEecCCC
Q 040307          231 MDSNKVVVLDIRFP  244 (339)
Q Consensus       231 ~d~~~i~i~d~~~~  244 (339)
                      .++. +..||++++
T Consensus       220 ~~~~-l~~~d~~tG  232 (238)
T PF13360_consen  220 SDGR-LYALDLKTG  232 (238)
T ss_dssp             TTTE-EEEEETTTT
T ss_pred             CCCE-EEEEECCCC
Confidence            7787 999999873

...

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.40  E-value=0.00062  Score=57.32  Aligned_cols=212  Identities=12%  Similarity=0.084  Sum_probs=123.9

Q ss_pred             ceeeeeec--cCCeeEEEeeecCC----cccEEEEeeec--cc---cC-CeEEEEecCCC-C--CcccceeeEeecCCCC
Q 040307            9 PGVHTYMA--QWPISTVAWSVRHD----RKSRLAVGSFL--ED---YS-NKIELVNFNPE-T--SDFSADNRLIFDHPYT   73 (339)
Q Consensus         9 ~~~~~~~~--~~~v~~i~~sp~~~----~~~~la~g~~~--~~---~~-~~i~i~~~~~~-~--~~~~~~~~~~~~~~~~   73 (339)
                      +.+.++..  ...+.+++...-..    ...+|++|+..  ++   .. |.|.++++... .  .++..  .......++
T Consensus        13 ~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~--i~~~~~~g~   90 (321)
T PF03178_consen   13 EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL--IHSTEVKGP   90 (321)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE--EEEEEESS-
T ss_pred             eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE--EEEEeecCc
Confidence            34455443  34566665544211    15789998861  11   12 89999888774 1  23332  334466889


Q ss_pred             ceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307           74 PTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD  152 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d  152 (339)
                      |++++-. ++     .++++.+..|.+|++...+ ......+...      ..+.++...   +++|+.|.....+.++.
T Consensus        91 V~ai~~~-~~-----~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~------~~i~sl~~~---~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   91 VTAICSF-NG-----RLVVAVGNKLYVYDLDNSKTLLKKAFYDSP------FYITSLSVF---KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEEE-TT-----EEEEEETTEEEEEEEETTSSEEEEEEE-BS------SSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred             ceEhhhh-CC-----EEEEeecCEEEEEEccCcccchhhheecce------EEEEEEecc---ccEEEEEEcccCEEEEE
Confidence            9999877 44     5666666699999999887 4444444433      467777765   46999999988888875


Q ss_pred             CCC-Ceeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCC-------c-ceeeEEeCCCCCCCeEEE---E
Q 040307          153 IDR-EILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDK-------E-RSTIIYENPVQDCPLLRL---E  217 (339)
Q Consensus       153 ~~~-~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~-~~~~~~~~~~~~~~v~~~---~  217 (339)
                      .+. ...+..+.  .....++++.+- +++.++.+..+|.+.++.....       . ........ +....|+++   .
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~  234 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGS  234 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEE
Confidence            433 33233332  234567888887 6679999999999999987632       1 11211111 123456666   4


Q ss_pred             EecC--CCC-----eEEEEeeCCCeEEEE
Q 040307          218 WNKA--DPR-----FMATVGMDSNKVVVL  239 (339)
Q Consensus       218 ~~p~--~~~-----~l~~~~~d~~~i~i~  239 (339)
                      +.|.  ...     .++.++.+|. |.+.
T Consensus       235 l~~~~~~~~~~~~~~i~~~T~~G~-Ig~l  262 (321)
T PF03178_consen  235 LIPRSGSSESPNRPQILYGTVDGS-IGVL  262 (321)
T ss_dssp             SS--SSSS-TTEEEEEEEEETTS--EEEE
T ss_pred             eeecCCCCcccccceEEEEecCCE-EEEE
Confidence            4441  122     3777788888 6633

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=1.3e-05  Score=71.76  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=82.8

Q ss_pred             ceEEEEcCCCCCCCCCeEEEeC------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           74 PTNIAFFPSEETLNPDIVATSG------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      .+-.+|+|..     .++|.++      +.|.||- +++++..-.+.+        -.+++++|+| ..-.|+.|-.-|.
T Consensus        18 sti~SWHPse-----PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------~hatSLCWHp-e~~vLa~gwe~g~   82 (1416)
T KOG3617|consen   18 STISSWHPSE-----PLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------VHATSLCWHP-EEFVLAQGWEMGV   82 (1416)
T ss_pred             ccccccCCCC-----ceeEEEEecCCCCceEEEEe-cCCCCCcccccc--------eehhhhccCh-HHHHHhhccccce
Confidence            3445799998     7888774      2777774 344422222222        3456899999 8788999999999


Q ss_pred             EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECC
Q 040307          148 CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLR  195 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~  195 (339)
                      +.+|...+.+.-.....|..+|..+.|+ +|+.++++..-|.+.+|...
T Consensus        83 ~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   83 SDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            9999988777655566799999999999 89999999999999999876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.33  E-value=0.00084  Score=58.24  Aligned_cols=192  Identities=12%  Similarity=0.139  Sum_probs=98.5

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-------eccCCce
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-------VAHDREV  169 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~~~~~v  169 (339)
                      .|+||+....   ++..+.-..     +.|.++.|..  ...|++-..||.++++|+. |+....+       .-....+
T Consensus        62 ~I~iys~sG~---ll~~i~w~~-----~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i  130 (410)
T PF04841_consen   62 SIQIYSSSGK---LLSSIPWDS-----GRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRI  130 (410)
T ss_pred             EEEEECCCCC---EeEEEEECC-----CCEEEEEECC--CCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccc
Confidence            3889987665   444444433     6899999984  4556666789999999985 3321111       1111112


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCC------CCeEE-EEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQD------CPLLR-LEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~------~~v~~-~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      ....+. .|  ++.-..++.+.+..-.... ........+...      ..... ..++. +....+....++. +.+.+
T Consensus       131 ~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~-i~~i~  206 (410)
T PF04841_consen  131 FAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGET-IYIID  206 (410)
T ss_pred             cccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCE-EEEEE
Confidence            222222 23  3333344554444322211 111111110000      00001 12332 3333333344444 55444


Q ss_pred             cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec--ccceeEEEEe
Q 040307          241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ--SMAEINVVRW  318 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~  318 (339)
                      .... ..   +. ..+++..++.||++ ++||.-..+|.+.+......+             ......  ......++.|
T Consensus       207 ~~~~-~~---i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~-------------~~~e~~~~~~~~p~~~~W  267 (410)
T PF04841_consen  207 ENSF-KQ---ID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSE-------------KLCEFDTDSKSPPKQMAW  267 (410)
T ss_pred             cccc-cc---cc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccc-------------eeEEeecCcCCCCcEEEE
Confidence            3321 11   22 24689999999999 699999999999988765554             222222  2345667777


Q ss_pred             cCCC
Q 040307          319 SPLE  322 (339)
Q Consensus       319 ~p~~  322 (339)
                      +-++
T Consensus       268 CG~d  271 (410)
T PF04841_consen  268 CGND  271 (410)
T ss_pred             ECCC
Confidence            7665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.29  E-value=0.00059  Score=59.28  Aligned_cols=137  Identities=10%  Similarity=-0.081  Sum_probs=85.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307          136 TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  215 (339)
                      +..++.++.+|.+..+|..+++.+..... . ....+.. .++.++.++.++.+..+|..+++..=.....  ......+
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~s  330 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREY-G-SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTA  330 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecC-C-CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccC
Confidence            45666777899999999999987655431 1 1122223 3567777788999999999887632111110  1112222


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      ...   .+..+++++.+|. +++.|..+ ++.+.+.......+.+ ..+  .+ ..|+.++.||.|..++.
T Consensus       331 p~v---~~g~l~v~~~~G~-l~~ld~~t-G~~~~~~~~~~~~~~s~P~~--~~-~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        331 PVL---YNGYLVVGDSEGY-LHWINRED-GRFVAQQKVDSSGFLSEPVV--AD-DKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEE---ECCEEEEEeCCCE-EEEEECCC-CCEEEEEEcCCCcceeCCEE--EC-CEEEEEeCCceEEEEeC
Confidence            233   2456778888888 99999987 5666655543333322 222  23 37888899999888764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.26  E-value=0.0016  Score=57.97  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=69.5

Q ss_pred             CCcEEEEEeCCCcEEEEECCC----C-cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCCC---
Q 040307          176 GFNVFASVSGDCSVRVFDLRD----K-ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPTN---  246 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~d~~~----~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~~---  246 (339)
                      ++++...  .++.|.+.|.++    . +....+..    ......++++| +|+++++++. +.. +.|+|+.+...   
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSP-DGkylyVanklS~t-VSVIDv~k~k~~~~  358 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSP-DGKYFIANGKLSPT-VTVIDVRKLDDLFD  358 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECC-CCCEEEEeCCCCCc-EEEEEChhhhhhhh
Confidence            3554444  367899999998    2 32222222    25678999999 7887766655 555 99999987432   


Q ss_pred             --------ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          247 --------PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       247 --------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                              ...+..- ...-...+|.++| +...|-.-|..|..|++..
T Consensus       359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence                    1222222 2234578899998 5888888999999999987

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.0016  Score=51.93  Aligned_cols=198  Identities=12%  Similarity=0.160  Sum_probs=106.4

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      +-...+..|+|.|+..    .++|+..+  .|..++.+ ++  .+..+.-..   + ...-++++.. ++.++++.-.++
T Consensus        19 g~~~e~SGLTy~pd~~----tLfaV~d~~~~i~els~~-G~--vlr~i~l~g---~-~D~EgI~y~g-~~~~vl~~Er~~   86 (248)
T PF06977_consen   19 GILDELSGLTYNPDTG----TLFAVQDEPGEIYELSLD-GK--VLRRIPLDG---F-GDYEGITYLG-NGRYVLSEERDQ   86 (248)
T ss_dssp             T--S-EEEEEEETTTT----EEEEEETTTTEEEEEETT-----EEEEEE-SS-----SSEEEEEE-S-TTEEEEEETTTT
T ss_pred             CccCCccccEEcCCCC----eEEEEECCCCEEEEEcCC-CC--EEEEEeCCC---C-CCceeEEEEC-CCEEEEEEcCCC
Confidence            4445699999999873    46666654  66666653 44  344333221   1 5678899974 666666555589


Q ss_pred             eEEEEECCCCe------eeeeee-----ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCC--C-cceeeEEe-----C
Q 040307          147 TCVIWDIDREI------LETQLV-----AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRD--K-ERSTIIYE-----N  206 (339)
Q Consensus       147 ~v~i~d~~~~~------~~~~~~-----~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~-~~~~~~~~-----~  206 (339)
                      .+.++++....      ....+.     .++..+-.++|+ .++.|+.+-......+|.++.  . ........     .
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence            99999884321      112221     244568999999 456666666666677777664  1 11111000     1


Q ss_pred             CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------CCeeEEEeccCCCCeEEEEeCC
Q 040307          207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE---------GSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      ......+.+++++|.++++++....+.. |..+|..  ++++..+.-..         ..--.|+|.++|.  |...++-
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEp  241 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRL-LLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEP  241 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTE-EEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETT
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCe-EEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCC
Confidence            1123467899999988888888777776 8889844  55555544322         2467899999983  4555566


Q ss_pred             CcEEEE
Q 040307          278 SRALIW  283 (339)
Q Consensus       278 g~v~iw  283 (339)
                      +..++|
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.19  E-value=0.003  Score=53.97  Aligned_cols=238  Identities=15%  Similarity=0.129  Sum_probs=118.2

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE-----eecC---------CCCceEEEEcCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL-----IFDH---------PYTPTNIAFFPS   82 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~-----~~~~---------~~~v~~l~~~~~   82 (339)
                      ...+....|||+   |+.+|...     ++.|.+.+..  ++.......-     ..+-         -+.-..+-||||
T Consensus        42 ~~~~~~~~~sP~---g~~~~~v~-----~~nly~~~~~--~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd  111 (353)
T PF00930_consen   42 PPKLQDAKWSPD---GKYIAFVR-----DNNLYLRDLA--TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD  111 (353)
T ss_dssp             ETTBSEEEE-SS---STEEEEEE-----TTEEEEESST--TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT
T ss_pred             ccccccceeecC---CCeeEEEe-----cCceEEEECC--CCCeEEeccccceeEEcCccceeccccccccccceEECCC
Confidence            467889999999   99999998     8999995433  2222210000     0000         122367889999


Q ss_pred             CCCCCCCeEEEeC-C--cEEEE-----------------------------------eecCCcceeEEEeecCCCccCCC
Q 040307           83 EETLNPDIVATSG-D--SLRLW-----------------------------------EIHDDRTELKSLLNSNKTSEFSS  124 (339)
Q Consensus        83 ~~~~~~~~la~~~-~--~i~iw-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~  124 (339)
                      +     +.||... |  .|..+                                   ++.+++...+......  .....
T Consensus       112 ~-----~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~--~~~~~  184 (353)
T PF00930_consen  112 S-----KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL--NPQDY  184 (353)
T ss_dssp             S-----SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH--HTSSE
T ss_pred             C-----CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc--CCCcc
Confidence            9     6766653 2  22222                                   2222211100000000  01124


Q ss_pred             CEEEEEEcCCCCCEEEEEe--CC---CeEEEEECCCCeeeeeeec-cCCce---eEEEec---CCcEEEEEeCCCcEEE-
Q 040307          125 AITSFDWAGFDTRRVATCS--VD---TTCVIWDIDREILETQLVA-HDREV---YDISWG---GFNVFASVSGDCSVRV-  191 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~~--~d---~~v~i~d~~~~~~~~~~~~-~~~~v---~~~~~~---~~~~l~~~~~d~~i~i-  191 (339)
                      .+..+.|.+ +++.|+..-  .+   ..+.++|..+++....+.. ....|   ....+.   ...++.....+|.-+| 
T Consensus       185 yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly  263 (353)
T PF00930_consen  185 YLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY  263 (353)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred             CcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence            677888987 666344332  22   2466778776654333321 12222   244442   3455556667776555 


Q ss_pred             -EECCCCcceeeEEeCCCCCCCeEE-EEEecCCCCeEEEEeeCC-CeEEEEecCCC-CCceEEEecCCCCeeEEEeccCC
Q 040307          192 -FDLRDKERSTIIYENPVQDCPLLR-LEWNKADPRFMATVGMDS-NKVVVLDIRFP-TNPVVVLSKHEGSVNGISWAPLY  267 (339)
Q Consensus       192 -~d~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~d~-~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~p~~  267 (339)
                       ++...+.  .....  ...-.|.. +.|++..+.+.+++..++ ..-.||-+... +..+..+....+.-..+.|||++
T Consensus       264 ~~~~~~~~--~~~lT--~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg  339 (353)
T PF00930_consen  264 LYDLDGGK--PRQLT--SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG  339 (353)
T ss_dssp             EEETTSSE--EEESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred             EEcccccc--eeccc--cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence             4554444  22122  13456644 677874445555555532 12455555443 44456665544433699999999


Q ss_pred             CCeEEEEeC
Q 040307          268 GRRLCSVAD  276 (339)
Q Consensus       268 ~~~l~~~~~  276 (339)
                      ..++.+++.
T Consensus       340 ~y~v~~~s~  348 (353)
T PF00930_consen  340 KYYVDTYSG  348 (353)
T ss_dssp             SEEEEEEES
T ss_pred             CEEEEEEcC
Confidence            655555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.16  E-value=0.0027  Score=52.27  Aligned_cols=245  Identities=11%  Similarity=0.072  Sum_probs=139.1

Q ss_pred             EEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec----CCCCceEEEEcCCCCCCCCCeE
Q 040307           22 TVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD----HPYTPTNIAFFPSEETLNPDIV   91 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~~~~~l   91 (339)
                      .+..+|+   ++.+.++..      .+.....|.+||..  +........+...    .......++++.++     +++
T Consensus        40 ~~~~spd---gk~~y~a~T~~sR~~rG~RtDvv~~~D~~--TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dg-----k~~  109 (342)
T PF06433_consen   40 NVALSPD---GKTIYVAETFYSRGTRGERTDVVEIWDTQ--TLSPTGEIEIPPKPRAQVVPYKNMFALSADG-----KFL  109 (342)
T ss_dssp             EEEE-TT---SSEEEEEEEEEEETTEEEEEEEEEEEETT--TTEEEEEEEETTS-B--BS--GGGEEE-TTS-----SEE
T ss_pred             ceeECCC---CCEEEEEEEEEeccccccceeEEEEEecC--cCcccceEecCCcchheecccccceEEccCC-----cEE
Confidence            4678999   888876543      45567789996644  3333331122111    11234567888888     666


Q ss_pred             EEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeeeeee----
Q 040307           92 ATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILETQL----  162 (339)
Q Consensus        92 a~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~----  162 (339)
                      ....   - .|.|-|+...+  .+..+...       .+..+ + |..+..|.+-+.||.+.-..+. .|+.....    
T Consensus       110 ~V~N~TPa~SVtVVDl~~~k--vv~ei~~P-------GC~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F  178 (342)
T PF06433_consen  110 YVQNFTPATSVTVVDLAAKK--VVGEIDTP-------GCWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF  178 (342)
T ss_dssp             EEEEESSSEEEEEEETTTTE--EEEEEEGT-------SEEEE-E-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred             EEEccCCCCeEEEEECCCCc--eeeeecCC-------CEEEE-E-ecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence            6653   2 89999998887  55555542       22222 2 3234567788889999988886 45443221    


Q ss_pred             eccCCce-eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCC--C------CCCCeEEEEEecCCCCeEEEEee
Q 040307          163 VAHDREV-YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENP--V------QDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       163 ~~~~~~v-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~--~------~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                      .....++ ..-++. .+..++-.+.+|.|+-.|+......... ....  .      ..+.-.-+++++..+++.+.-..
T Consensus       179 ~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~  258 (342)
T PF06433_consen  179 DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ  258 (342)
T ss_dssp             STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred             CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence            1111222 233344 4556666789999999998877522111 1100  0      01223346777644444433221


Q ss_pred             --CC------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCC
Q 040307          232 --DS------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPG  289 (339)
Q Consensus       232 --d~------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~  289 (339)
                        ++      ++|.++|+.+ .+.+.++.. ..++.+|+.+.+..-+|++. ..++.+.+||..+++
T Consensus       259 g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  259 GGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             --TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence              11      1588888887 566666664 34688999998874466554 467999999999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.00036  Score=60.45  Aligned_cols=220  Identities=18%  Similarity=0.197  Sum_probs=118.6

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-C
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-G   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~   95 (339)
                      ...+..-+|+|+   ++.++.-.+.......+.+++++........      ...+.-..-+|+||+     +.|+-+ .
T Consensus       192 ~~~~~~p~ws~~---~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~~P~fspDG-----~~l~f~~~  257 (425)
T COG0823         192 GSLILTPAWSPD---GKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNGAPAFSPDG-----SKLAFSSS  257 (425)
T ss_pred             CcceeccccCcC---CCceEEEEEecCCCceEEEEeccCCccceee------ccCCccCCccCCCCC-----CEEEEEEC
Confidence            357778899999   8888887652222234667555544333332      234444566899999     555544 3


Q ss_pred             -C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccCCc
Q 040307           96 -D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        96 -~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                       +   .|.++|+.......   +....     +.-+.=.|+| +|+.|+..+. .|  .|.+.+++.... ..+......
T Consensus       258 rdg~~~iy~~dl~~~~~~~---Lt~~~-----gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~  327 (425)
T COG0823         258 RDGSPDIYLMDLDGKNLPR---LTNGF-----GINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG  327 (425)
T ss_pred             CCCCccEEEEcCCCCccee---cccCC-----ccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence             2   88888988876222   32221     2223567898 8888777654 34  466667665543 333322222


Q ss_pred             eeEEEec-CCcEEEEEeCC-Cc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          169 VYDISWG-GFNVFASVSGD-CS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      -..-.|+ ++++|+..+.. |.  |.+.|+.+...... ..   .......-.|.| ++..+...+..+..=.++.+...
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~-lt---~~~~~e~ps~~~-ng~~i~~~s~~~~~~~l~~~s~~  402 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI-LT---STYLNESPSWAP-NGRMIMFSSGQGGGSVLSLVSLD  402 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE-cc---ccccCCCCCcCC-CCceEEEeccCCCCceEEEeecc
Confidence            2366788 78888877643 43  66666666553221 11   122334556776 55555443333221344444332


Q ss_pred             CCceEEEecCCCCeeEEEecc
Q 040307          245 TNPVVVLSKHEGSVNGISWAP  265 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p  265 (339)
                      ++....+....+.+...+|+|
T Consensus       403 g~~~~~~~~~~~~~~~p~w~~  423 (425)
T COG0823         403 GRVSRPLPLADGDVRVPAWSP  423 (425)
T ss_pred             ceeEEEEeccCcceecccccC
Confidence            332223333334444445544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.13  E-value=0.0014  Score=56.20  Aligned_cols=201  Identities=12%  Similarity=0.061  Sum_probs=108.6

Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-------------------------------------------eeee
Q 040307          125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-------------------------------------------LETQ  161 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-------------------------------------------~~~~  161 (339)
                      .|+.+.|.+ +...|++|...|.|-||.....+                                           +...
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            578888887 77788888888888887542210                                           1222


Q ss_pred             eeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC-----CCCCCCeEEEEEec----CCC---CeEEEE
Q 040307          162 LVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN-----PVQDCPLLRLEWNK----ADP---RFMATV  229 (339)
Q Consensus       162 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~p----~~~---~~l~~~  229 (339)
                      +....++|++++.++=.+++.|..+|.+.|.|+|.+.......-.     ......++++.|..    .++   -.|++|
T Consensus        82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            233467899999998779999999999999999988643331111     12345677888863    222   367777


Q ss_pred             eeCCCeEEEEecCC--CCCc----eEEEecCCCCeeEEE-eccCCC-------------------CeEEEEeCCCcEEEE
Q 040307          230 GMDSNKVVVLDIRF--PTNP----VVVLSKHEGSVNGIS-WAPLYG-------------------RRLCSVADDSRALIW  283 (339)
Q Consensus       230 ~~d~~~i~i~d~~~--~~~~----~~~~~~~~~~v~~~~-~~p~~~-------------------~~l~~~~~dg~v~iw  283 (339)
                      +..|. +.+|.+.-  .+..    ......+.+.|..+. ++.+..                   .-++....+..++++
T Consensus       162 Tn~G~-v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  162 TNSGN-VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             ETTSE-EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             eCCCC-EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            77777 99997752  1111    111123455655554 322210                   123334446789999


Q ss_pred             EecCCCCCCCCCCCCCcccceeeecccceeEEEEec-----CCCCceEEEecCCeEEEEeC
Q 040307          284 EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS-----PLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .....+            .....+........+.+-     ..+..|++...+|.+++|.|
T Consensus       241 ~~~~~k------------~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  241 KPPKSK------------GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             -TT---------------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             eCCCCc------------ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            888766            222333222233334442     24445777889999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.11  E-value=0.0013  Score=57.35  Aligned_cols=219  Identities=10%  Similarity=0.132  Sum_probs=116.2

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      ...+..+.++|+   ++++++++     +|...||.  ..  ....      ...+.-....|.+.+     ++.+--..
T Consensus        32 ~~~p~~ls~npn---gr~v~V~g-----~geY~iyt--~~--~~r~------k~~G~g~~~vw~~~n-----~yAv~~~~   88 (443)
T PF04053_consen   32 EIYPQSLSHNPN---GRFVLVCG-----DGEYEIYT--AL--AWRN------KAFGSGLSFVWSSRN-----RYAVLESS   88 (443)
T ss_dssp             SS--SEEEE-TT---SSEEEEEE-----TTEEEEEE--TT--TTEE------EEEEE-SEEEE-TSS-----EEEEE-TT
T ss_pred             CcCCeeEEECCC---CCEEEEEc-----CCEEEEEE--cc--CCcc------cccCceeEEEEecCc-----cEEEEECC
Confidence            346899999999   99999977     89999966  11  1111      112345678899966     54444434


Q ss_pred             -cEEEE-eecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           97 -SLRLW-EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        97 -~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                       .|.|+ +++..   ....++..      ..+..+-    .|.+|+..+.+ .|.+||.++++.++.+...  +|..+.|
T Consensus        89 ~~I~I~kn~~~~---~~k~i~~~------~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W  152 (443)
T PF04053_consen   89 STIKIYKNFKNE---VVKSIKLP------FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW  152 (443)
T ss_dssp             S-EEEEETTEE----TT-----S------S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred             CeEEEEEcCccc---cceEEcCC------cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence             88886 44332   21122221      1233332    26777776654 8999999999999988632  4899999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCC-----------cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDK-----------ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      + ++++++..+.+ .+.+++....           .....+.+.   ...|.+.+|.- +  .++-.+.. . ++-+  .
T Consensus       153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~-d--~fiYtT~~-~-lkYl--~  221 (443)
T PF04053_consen  153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVE-D--CFIYTTSN-H-LKYL--V  221 (443)
T ss_dssp             -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEET-T--EEEEE-TT-E-EEEE--E
T ss_pred             ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEc-C--EEEEEcCC-e-EEEE--E
Confidence            9 67888888755 6888775544           012222221   35888999973 3  44433333 4 7663  2


Q ss_pred             CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       243 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      . + ....+..-..++.=+.+.|.. ..+.....|+.+..+.+...
T Consensus       222 ~-G-e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  222 N-G-ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             T-T-EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--HH
T ss_pred             c-C-CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEECHH
Confidence            2 1 133333335577777888876 48888888888888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.08  E-value=0.0011  Score=61.18  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=100.6

Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCeeeeeeeccCCc-eeEEEec------CCcEEEEEeCCCcEEEEECCCCcceeeEEeC
Q 040307          135 DTRRVATC-SVDTTCVIWDIDREILETQLVAHDRE-VYDISWG------GFNVFASVSGDCSVRVFDLRDKERSTIIYEN  206 (339)
Q Consensus       135 ~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~-v~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  206 (339)
                      +.++|+.. .....|+-.|++.|+.+..+..+... |..++-.      .+...+.|-.+..+..||.|-..........
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            45555554 35688999999999999999877654 6655443      1345566777889999999975421111011


Q ss_pred             --CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          207 --PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       207 --~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                        -.......|++-.  ...+||+|+.+|. |++||- .+......+.+-..+|.+|..+.||. +|++.+ +..+.|++
T Consensus       572 k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~-IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGk-wilaTc-~tyLlLi~  645 (794)
T PF08553_consen  572 KQYSSKNNFSCFATT--EDGYIAVGSNKGD-IRLYDR-LGKRAKTALPGLGDPIIGIDVTADGK-WILATC-KTYLLLID  645 (794)
T ss_pred             cccccCCCceEEEec--CCceEEEEeCCCc-EEeecc-cchhhhhcCCCCCCCeeEEEecCCCc-EEEEee-cceEEEEE
Confidence              1123456666654  5678999999999 999994 33444556667788999999999995 555444 46788888


Q ss_pred             ecC
Q 040307          285 VVG  287 (339)
Q Consensus       285 ~~~  287 (339)
                      ...
T Consensus       646 t~~  648 (794)
T PF08553_consen  646 TLI  648 (794)
T ss_pred             Eee
Confidence            753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.05  E-value=0.0054  Score=51.54  Aligned_cols=273  Identities=9%  Similarity=0.031  Sum_probs=124.6

Q ss_pred             EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCCCCCCCCeE-EEeCC-cEE
Q 040307           23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSEETLNPDIV-ATSGD-SLR   99 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~l-a~~~~-~i~   99 (339)
                      =+|.++   |+.|+.++.   .+|.-.+|.++..+.+..+    ..... .......++|+.     +.+ ..-.+ .|+
T Consensus        41 ~~ft~d---G~kllF~s~---~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~-----~~~~Yv~~~~~l~  105 (386)
T PF14583_consen   41 NCFTDD---GRKLLFASD---FDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDD-----RALYYVKNGRSLR  105 (386)
T ss_dssp             --B-TT---S-EEEEEE----TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTS-----SEEEEEETTTEEE
T ss_pred             CCcCCC---CCEEEEEec---cCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCC-----CeEEEEECCCeEE
Confidence            357777   876666653   5777777778888888876    22222 223356677887     444 34444 888


Q ss_pred             EEeecCCcceeEEEeecCCCccCCCCEEEEEEcC-CCCCEEEEEeC----------------------CCeEEEEECCCC
Q 040307          100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAG-FDTRRVATCSV----------------------DTTCVIWDIDRE  156 (339)
Q Consensus       100 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~----------------------d~~v~i~d~~~~  156 (339)
                      -.|+++.+.+.+..+..       .-+-...|.. .++..++-.-.                      ...|.-.|+.++
T Consensus       106 ~vdL~T~e~~~vy~~p~-------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG  178 (386)
T PF14583_consen  106 RVDLDTLEERVVYEVPD-------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG  178 (386)
T ss_dssp             EEETTT--EEEEEE--T-------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred             EEECCcCcEEEEEECCc-------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence            88988887445555443       3333345532 24554433211                      224556678877


Q ss_pred             eeeeeeeccCCceeEEEec--CCcEEEEEeC---CC-cEEEEECCCCcce-eeEEeCCCCCCCeEEEEEecCCCCeEEE-
Q 040307          157 ILETQLVAHDREVYDISWG--GFNVFASVSG---DC-SVRVFDLRDKERS-TIIYENPVQDCPLLRLEWNKADPRFMAT-  228 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~---d~-~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~-  228 (339)
                      +....+. -...+..+.|+  +..+|+-|-.   +. .-|||-++..... ..+... .....+..=-|.| +|..|.- 
T Consensus       179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~-DG~~i~y~  255 (386)
T PF14583_consen  179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVP-DGSTIWYD  255 (386)
T ss_dssp             -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-T-TSS-EEEE
T ss_pred             ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccC-CCCEEEEE
Confidence            7554443 55678889999  4667777654   22 1255655433211 111111 1223344456887 6665544 


Q ss_pred             EeeCCC---eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC----------------cEEEEEecCCC
Q 040307          229 VGMDSN---KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS----------------RALIWEVVGPG  289 (339)
Q Consensus       229 ~~~d~~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------------~v~iwd~~~~~  289 (339)
                      +...+.   .|.-+|..+...  ..+. ...+...+--++++ ++++-=+.|.                -|+++++....
T Consensus       256 ~~~~~~~~~~i~~~d~~t~~~--~~~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~  331 (386)
T PF14583_consen  256 SYTPGGQDFWIAGYDPDTGER--RRLM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR  331 (386)
T ss_dssp             EEETTT--EEEEEE-TTT--E--EEEE-EE-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTE
T ss_pred             eecCCCCceEEEeeCCCCCCc--eEEE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence            332332   266667765322  1221 12245566677888 4655433332                34445554433


Q ss_pred             CCCCCCCCCCcccceeeecc---------cce--eEEEEecCCCCceEE-EecCCeEEEE
Q 040307          290 YRSGNGGPSGDVEPELCYQS---------MAE--INVVRWSPLELDWIA-IAFVNKLQLL  337 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~---------~~~--i~~~~~~p~~~~l~~-~~~d~~v~~w  337 (339)
                                   ......|         ...  =-...|+||++.++- +...|...||
T Consensus       332 -------------~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  332 -------------FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             -------------EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             -------------eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence                         1111111         111  146899999998774 4567776665

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.97  E-value=0.0018  Score=43.84  Aligned_cols=102  Identities=13%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             EEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307          126 ITSFDWAGFD---TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       126 i~~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  202 (339)
                      |++|++...+   .+.|++|+.|..|++|+-  .+.+..+. -.+.|+++.-.....|+.+-.+|+|-+|+-....    
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl----   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL----   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCccee----
Confidence            4556655333   368999999999999984  35667775 3567888888866889999999999999763322    


Q ss_pred             EEeCCCCCCCeEEEEEecCCC---CeEEEEeeCCCeEE
Q 040307          203 IYENPVQDCPLLRLEWNKADP---RFMATVGMDSNKVV  237 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~d~~~i~  237 (339)
                       .... .+..+.++++..-++   ..|++|-.+|. |-
T Consensus        75 -WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGk-ve  109 (111)
T PF14783_consen   75 -WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGK-VE  109 (111)
T ss_pred             -eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCe-EE
Confidence             1111 234566766653222   36778877776 53

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.95  E-value=0.0014  Score=56.89  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=92.1

Q ss_pred             CCEEEEEEcCCCCCEEEEEe---CC-CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCc--EEEEECC
Q 040307          124 SAITSFDWAGFDTRRVATCS---VD-TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFA-SVSGDCS--VRVFDLR  195 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~---~d-~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~--i~i~d~~  195 (339)
                      ..+..-+|+| ++..++...   .. ..+.++|+++++....+. ..+.-...+|+ +++.|+ +...|+.  |.++|+.
T Consensus       193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            4666778887 776655442   22 469999999887555443 33334457888 555544 5556665  6667887


Q ss_pred             CCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307          196 DKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCS  273 (339)
Q Consensus       196 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  273 (339)
                      ...... +...   .+.-..-.|+| +|+.++..+..++  +|.++|...  .....+....+.-..-.|+|+|. +|+.
T Consensus       271 ~~~~~~-Lt~~---~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~SpdG~-~i~~  342 (425)
T COG0823         271 GKNLPR-LTNG---FGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSPDGD-KIVF  342 (425)
T ss_pred             CCccee-cccC---CccccCccCCC-CCCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCCCCC-EEEE
Confidence            776333 2222   22333678998 7787777666554  355555543  33344444444334789999995 6655


Q ss_pred             EeC-CCc--EEEEEecCCC
Q 040307          274 VAD-DSR--ALIWEVVGPG  289 (339)
Q Consensus       274 ~~~-dg~--v~iwd~~~~~  289 (339)
                      .+. +|.  |.+.|+....
T Consensus       343 ~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EeccCCceeeEEeccCCCC
Confidence            553 455  4444444443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=8e-05  Score=65.54  Aligned_cols=113  Identities=8%  Similarity=-0.013  Sum_probs=82.3

Q ss_pred             CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307          212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR  291 (339)
Q Consensus       212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~  291 (339)
                      .+.--+++. ++++++.|+..|. +++|+-..+........+..+.+..+..+++. +++|.|+..|.|.++.+..... 
T Consensus        35 ~v~lTc~ds-t~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p-  110 (726)
T KOG3621|consen   35 RVKLTCVDA-TEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP-  110 (726)
T ss_pred             eEEEEEeec-CCceEEEecccce-EEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC-
Confidence            344445553 8899999999998 99998665332223333344566677888887 6999999999999999988551 


Q ss_pred             CCCCCCCCcccceee-----ecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          292 SGNGGPSGDVEPELC-----YQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                                .++..     ..|...|++++|++++..++.|...|.|.+-+
T Consensus       111 ----------~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen  111 ----------RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ----------CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence                      11111     13678899999999999999998888887654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.94  E-value=0.0076  Score=50.69  Aligned_cols=221  Identities=13%  Similarity=0.049  Sum_probs=107.9

Q ss_pred             EEEEcCCCCCCCCCeEEEeC-C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           76 NIAFFPSEETLNPDIVATSG-D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~~-~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      .=+|.++|+    ++|.++. +   .+.+.|+++++..++....+       .......++| +.+.++-......|+-.
T Consensus        40 ~~~ft~dG~----kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-------~~~~g~~~s~-~~~~~~Yv~~~~~l~~v  107 (386)
T PF14583_consen   40 QNCFTDDGR----KLLFASDFDGNRNLYLLDLATGEITQLTDGPG-------DNTFGGFLSP-DDRALYYVKNGRSLRRV  107 (386)
T ss_dssp             S--B-TTS-----EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------B-TTT-EE-T-TSSEEEEEETTTEEEEE
T ss_pred             CCCcCCCCC----EEEEEeccCCCcceEEEEcccCEEEECccCCC-------CCccceEEec-CCCeEEEEECCCeEEEE
Confidence            336888884    4555443 2   88888999886444333222       1122455667 66776665566789999


Q ss_pred             ECCCCeeeeeeeccCCceeEEEec---CCcEEEEEeC----------------------CCcEEEEECCCCcceeeEEeC
Q 040307          152 DIDREILETQLVAHDREVYDISWG---GFNVFASVSG----------------------DCSVRVFDLRDKERSTIIYEN  206 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~----------------------d~~i~i~d~~~~~~~~~~~~~  206 (339)
                      |+++.+....+......+-...|.   ++..++-.-.                      ...|.-.|+.+++....+.. 
T Consensus       108 dL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~-  186 (386)
T PF14583_consen  108 DLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED-  186 (386)
T ss_dssp             ETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE-
T ss_pred             ECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec-
Confidence            999988666665555555455664   3444332211                      23455667777764444333 


Q ss_pred             CCCCCCeEEEEEecCCCCeEEEEeeCCC-e--EEEEecCCCCCceEEEecCC--CCeeEEEeccCCCCeEEEEe-C---C
Q 040307          207 PVQDCPLLRLEWNKADPRFMATVGMDSN-K--VVVLDIRFPTNPVVVLSKHE--GSVNGISWAPLYGRRLCSVA-D---D  277 (339)
Q Consensus       207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~--i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~-~---d  277 (339)
                         ...+..+.|+|.+..+|+.|.+..- .  -+||-++..+.....+..+.  ..+..=-|.|+|..+...+- .   +
T Consensus       187 ---~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~  263 (386)
T PF14583_consen  187 ---TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQD  263 (386)
T ss_dssp             ---SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred             ---CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCc
Confidence               3678899999988888888765432 1  36777666554444444332  23455578999965544333 2   2


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307          278 SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  326 (339)
                      ..|.-+|+.+.+             ..... ....-..+.-+++|..++
T Consensus       264 ~~i~~~d~~t~~-------------~~~~~-~~p~~~H~~ss~Dg~L~v  298 (386)
T PF14583_consen  264 FWIAGYDPDTGE-------------RRRLM-EMPWCSHFMSSPDGKLFV  298 (386)
T ss_dssp             EEEEEE-TTT---------------EEEEE-EE-SEEEEEE-TTSSEEE
T ss_pred             eEEEeeCCCCCC-------------ceEEE-eCCceeeeEEcCCCCEEE
Confidence            234445555544             22222 122344566678887444

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.89  E-value=0.0092  Score=53.41  Aligned_cols=170  Identities=9%  Similarity=0.012  Sum_probs=98.6

Q ss_pred             CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          145 DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      .+.+.+.|.++.+...++.-- .....++++ ++.++++.+.+    .++..-+.....               ..+.|+
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---------------~~vvfn  277 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---------------WVVVFN  277 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc---------------eEEEEc
Confidence            345566676666655554322 233456666 56666666532    122222221111               223332


Q ss_pred             c-------CCCCeEEEEeeCCCeEEEEecCC----CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          220 K-------ADPRFMATVGMDSNKVVVLDIRF----PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       220 p-------~~~~~l~~~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      +       .+|++...+  ++. |.+.|.++    ....+..+.. ......+.++|||..+++++..+.+|.|.|+...
T Consensus       278 i~~iea~vkdGK~~~V~--gn~-V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        278 IARIEEAVKAGKFKTIG--GSK-VPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             hHHHHHhhhCCCEEEEC--CCE-EEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            2       256666652  444 99999886    2344444443 5678899999999655666667999999999886


Q ss_pred             CCCCCCCCCCCcccce----eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          289 GYRSGNGGPSGDVEPE----LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +....     ..+++.    ....-.......+|.++|..+.+---|..|-.|++
T Consensus       354 k~~~~-----~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        354 DDLFD-----GKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             hhhhh-----ccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence            61000     001111    11122444567889999875556678999998975

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00011  Score=63.88  Aligned_cols=92  Identities=16%  Similarity=0.291  Sum_probs=74.1

Q ss_pred             CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCee-EEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN-GISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..+..+.|+| .-.++|.+..+|. +.+..+.  .+.+.++..|...++ +++|.||| ++||.|-.||+|++.|+..+.
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~ge-lli~R~n--~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGE-LLIHRLN--WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCc-EEEEEec--cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCC
Confidence            4678899999 8899999999998 8888876  455777777777777 99999999 799999999999999999988


Q ss_pred             CCCCCCCCCCcccceee--ecccceeEEEEecC
Q 040307          290 YRSGNGGPSGDVEPELC--YQSMAEINVVRWSP  320 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p  320 (339)
                                   .+..  ..-...|..+-|.|
T Consensus        96 -------------~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 -------------RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             -------------ceeccccccccchheeeccc
Confidence                         2221  23345677777764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.86  E-value=0.0089  Score=51.99  Aligned_cols=51  Identities=20%  Similarity=0.294  Sum_probs=39.8

Q ss_pred             eEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCc
Q 040307          147 TCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKE  198 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  198 (339)
                      .|.||+. .|+.+.++.-..+.+.++.|.+...|+....||.+++||+....
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence            5899997 46666666544478999999977777788899999999997544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.84  E-value=0.017  Score=50.57  Aligned_cols=247  Identities=14%  Similarity=0.128  Sum_probs=127.1

Q ss_pred             EEEeeecCCcccEEEEeee-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC----
Q 040307           22 TVAWSVRHDRKSRLAVGSF-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD----   96 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~----   96 (339)
                      ..++||+   +++||.+-. .+.....+++  ++..+++.... .+  .. .....+.|.++++    .++.+..+    
T Consensus       128 ~~~~Spd---g~~la~~~s~~G~e~~~l~v--~Dl~tg~~l~d-~i--~~-~~~~~~~W~~d~~----~~~y~~~~~~~~  194 (414)
T PF02897_consen  128 GFSVSPD---GKRLAYSLSDGGSEWYTLRV--FDLETGKFLPD-GI--EN-PKFSSVSWSDDGK----GFFYTRFDEDQR  194 (414)
T ss_dssp             EEEETTT---SSEEEEEEEETTSSEEEEEE--EETTTTEEEEE-EE--EE-EESEEEEECTTSS----EEEEEECSTTTS
T ss_pred             eeeECCC---CCEEEEEecCCCCceEEEEE--EECCCCcCcCC-cc--cc-cccceEEEeCCCC----EEEEEEeCcccc
Confidence            5688999   999998753 2223345777  55545544431 11  11 1123399999983    44455422    


Q ss_pred             --------cEEEEeecCCcceeEEEeecCCCccCCCC-EEEEEEcCCCCCEEEEEeC---C-CeEEEEECCCC----eee
Q 040307           97 --------SLRLWEIHDDRTELKSLLNSNKTSEFSSA-ITSFDWAGFDTRRVATCSV---D-TTCVIWDIDRE----ILE  159 (339)
Q Consensus        97 --------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~---d-~~v~i~d~~~~----~~~  159 (339)
                              .|+.|.+.+........+.....    .. ...+..++ ++++|+....   + ..+.+.++..+    ...
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~----~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~  269 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDE----PFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP  269 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTC----TTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCC----CcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence                    47888888776443444544331    22 56788887 8887765433   2 45788888764    233


Q ss_pred             eeeeccCCce-eEEEecCCcEEEEEeC---CCcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          160 TQLVAHDREV-YDISWGGFNVFASVSG---DCSVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       160 ~~~~~~~~~v-~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      ..+......+ ..+....+.+++....   .+.|.-.++.....  .......+.....+..+...  .+.+++....++
T Consensus       270 ~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~  347 (414)
T PF02897_consen  270 KLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENG  347 (414)
T ss_dssp             EEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETT
T ss_pred             EEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECC
Confidence            3333333333 3344444445544432   35677778777763  12122221112245555543  444444444444


Q ss_pred             C-eEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307          234 N-KVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVAD---DSRALIWEVVGPG  289 (339)
Q Consensus       234 ~-~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~  289 (339)
                      . .|+++++.. +.....+.. -.+.|..+...++++.+.++.+.   -+++.-||+.+++
T Consensus       348 ~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  348 SSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             ccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            3 588999872 222333332 23446667666666555554442   2567777777766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.83  E-value=0.00099  Score=61.41  Aligned_cols=139  Identities=9%  Similarity=-0.015  Sum_probs=88.7

Q ss_pred             CcEEEEE-eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe----cCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          177 FNVFASV-SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN----KADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       177 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      .++|+.- .....|+-.|+..++........  ...+|..++-.    .-+....+.|-.++. +..||.|..+..+..-
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~--~~~~v~~~~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVH--DDIPVVDIAPDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVDS  569 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecC--CCcceeEecccccccccCCCceEEEECCCc-eEEeccCCCCCceeec
Confidence            3444433 45678899999998855443332  22335544321    112344555666666 9999999754333221


Q ss_pred             ec----CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE
Q 040307          252 SK----HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       252 ~~----~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~  326 (339)
                      ..    ......+++-+.+|  .||+|+.+|.||+||--. .            ... .+.+...+|..|+.+.||++++
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g-~------------~AKT~lp~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG-K------------RAKTALPGLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc-h------------hhhhcCCCCCCCeeEEEecCCCcEEE
Confidence            22    23456777777776  899999999999998432 2            122 3335678999999999999888


Q ss_pred             EEecCCe
Q 040307          327 AIAFVNK  333 (339)
Q Consensus       327 ~~~~d~~  333 (339)
                      ++|..--
T Consensus       635 aTc~tyL  641 (794)
T PF08553_consen  635 ATCKTYL  641 (794)
T ss_pred             EeecceE
Confidence            8776443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00023  Score=61.97  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=76.0

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee-EEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY-DISWG-GFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..+.-+.|+| .-.+||.+..+|.|.++.++ -+.+.++.-+...++ +++|. +|+.|+.|-.||+|++-|..++....
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4677899999 88999999999999999998 555777766676777 99999 89999999999999999999987555


Q ss_pred             eEEeCCCCCCCeEEEEEec
Q 040307          202 IIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       202 ~~~~~~~~~~~v~~~~~~p  220 (339)
                      .....  ....|.++.|.|
T Consensus        99 ~~~~s--~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFS--VETDISKGIWDR  115 (665)
T ss_pred             ccccc--cccchheeeccc
Confidence            42222  346788888864

>smart00320 WD40 WD40 repeats

Probab=97.70  E-value=0.00012  Score=39.19  Aligned_cols=38  Identities=26%  Similarity=0.550  Sum_probs=33.0

Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ++...+..|...|.++.|+|.+ .++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            3456677888899999999998 6999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.022  Score=47.25  Aligned_cols=227  Identities=10%  Similarity=-0.012  Sum_probs=131.5

Q ss_pred             EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEee
Q 040307           24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEI  103 (339)
Q Consensus        24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~  103 (339)
                      .|.|+   ...|....-   ..+.|.-  |+..++....     +.+.+.+.++..-..+     ..|+++...+.+++.
T Consensus        31 ~w~~~---~~~L~w~DI---~~~~i~r--~~~~~g~~~~-----~~~p~~~~~~~~~d~~-----g~Lv~~~~g~~~~~~   92 (307)
T COG3386          31 VWDPD---RGALLWVDI---LGGRIHR--LDPETGKKRV-----FPSPGGFSSGALIDAG-----GRLIACEHGVRLLDP   92 (307)
T ss_pred             cCcCC---CCEEEEEeC---CCCeEEE--ecCCcCceEE-----EECCCCcccceeecCC-----CeEEEEccccEEEec
Confidence            57777   665555542   4666666  5555444443     5566666777666666     677887777888887


Q ss_pred             cCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----------CCeEEEEECCCCeeeeeeeccCCceeE
Q 040307          104 HDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----------DTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus       104 ~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      +.+.. .........   ......+.+...| ++.+-+....           -|.|+.+|. .+..++.+..+-..-+.
T Consensus        93 ~~~~~~t~~~~~~~~---~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NG  167 (307)
T COG3386          93 DTGGKITLLAEPEDG---LPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNG  167 (307)
T ss_pred             cCCceeEEeccccCC---CCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCc
Confidence            66552 222222211   1114556777887 6665554333           133444444 45555555554555678


Q ss_pred             EEec-CCcEEEEEe-CCCcEEEEECCC--Cc--ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          172 ISWG-GFNVFASVS-GDCSVRVFDLRD--KE--RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       172 ~~~~-~~~~l~~~~-~d~~i~i~d~~~--~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      |+|+ +++.|..+. ..+.|.-|++..  ..  ............+..-.++... +|.+-+++...+..|..|+..  +
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd--G  244 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD--G  244 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC--C
Confidence            9999 665665554 447788887752  11  0111122212345556677774 777776555554239999886  5


Q ss_pred             CceEEEecCCCCeeEEEecc-CCCCeEEEEeC
Q 040307          246 NPVVVLSKHEGSVNGISWAP-LYGRRLCSVAD  276 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~  276 (339)
                      +.+..+......+++++|-- +.+.+++|+..
T Consensus       245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             cEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence            67777777667788888864 44344445443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.68  E-value=0.0067  Score=41.16  Aligned_cols=102  Identities=9%  Similarity=0.011  Sum_probs=68.2

Q ss_pred             eEEEEEecC---CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          213 LLRLEWNKA---DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       213 v~~~~~~p~---~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |+++++...   ..+.|++|+.|.. |++|+-   ...+.++.. ...|..+.-...+  .++.+-.+|+|-+|+-... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKG---DEIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEeC---CcEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCcce-
Confidence            556666542   3368999999998 999974   345666665 5567777766664  7999999999999976432 


Q ss_pred             CCCCCCCCCCcccceeeecccceeEEEEecCCC----CceEEEecCCeEEE
Q 040307          290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE----LDWIAIAFVNKLQL  336 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~----~~l~~~~~d~~v~~  336 (339)
                                    +-.......++++++..-.    +.|+++-.+|.|-+
T Consensus        74 --------------lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   74 --------------LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             --------------eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                          2222233346666555432    24888888888753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.68  E-value=0.016  Score=45.43  Aligned_cols=107  Identities=12%  Similarity=-0.042  Sum_probs=67.0

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~  109 (339)
                      ..++.+|+    ..+.+.-  ++...+.+.-    +.-...+|.+-+.- -+     ++++.|. . .+++.++++++  
T Consensus        23 kT~v~igS----Hs~~~~a--vd~~sG~~~W----e~ilg~RiE~sa~v-vg-----dfVV~GCy~g~lYfl~~~tGs--   84 (354)
T KOG4649|consen   23 KTLVVIGS----HSGIVIA--VDPQSGNLIW----EAILGVRIECSAIV-VG-----DFVVLGCYSGGLYFLCVKTGS--   84 (354)
T ss_pred             ceEEEEec----CCceEEE--ecCCCCcEEe----ehhhCceeeeeeEE-EC-----CEEEEEEccCcEEEEEecchh--
Confidence            56788888    5788888  5555555443    22234445444444 33     4566655 3 89999999986  


Q ss_pred             eEEEeecCCCccCCCCEEEE-EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307          110 LKSLLNSNKTSEFSSAITSF-DWAGFDTRRVATCSVDTTCVIWDIDREILETQLV  163 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  163 (339)
                      ....+..-      ..|.+- ...+ ++.+|..|+.|++.+..|.++..++.+.+
T Consensus        85 ~~w~f~~~------~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   85 QIWNFVIL------ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             heeeeeeh------hhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence            33333321      122211 2233 78999999999999999998877766654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.58  E-value=0.032  Score=46.18  Aligned_cols=261  Identities=13%  Similarity=0.142  Sum_probs=139.0

Q ss_pred             CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC------------CcEEEEeecCCcceeEEE
Q 040307           46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG------------DSLRLWEIHDDRTELKSL  113 (339)
Q Consensus        46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~------------~~i~iw~~~~~~~~~~~~  113 (339)
                      +++.+  ++.+.+++.-  .+..+.   .-.+..+|++     +.+.+++            |.|.+||..+-.......
T Consensus        17 ~rv~v--iD~d~~k~lG--mi~~g~---~~~~~~spdg-----k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~   84 (342)
T PF06433_consen   17 SRVYV--IDADSGKLLG--MIDTGF---LGNVALSPDG-----KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE   84 (342)
T ss_dssp             EEEEE--EETTTTEEEE--EEEEES---SEEEEE-TTS-----SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred             ceEEE--EECCCCcEEE--Eeeccc---CCceeECCCC-----CEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence            46777  5555555543  222222   3346789999     5555431            279999999876333333


Q ss_pred             eecC-CCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcE
Q 040307          114 LNSN-KTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSV  189 (339)
Q Consensus       114 ~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i  189 (339)
                      +... .... ......++++. ++++++....  -..|.|.|+...+.+..+.. .+ + .+.|- .+.-|.+-+.||.+
T Consensus        85 iP~k~R~~~-~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C-~~iyP~~~~~F~~lC~DGsl  159 (342)
T PF06433_consen   85 IPPKPRAQV-VPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-C-WLIYPSGNRGFSMLCGDGSL  159 (342)
T ss_dssp             ETTS-B--B-S--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-E-EEEEEEETTEEEEEETTSCE
T ss_pred             cCCcchhee-cccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-E-EEEEecCCCceEEEecCCce
Confidence            4331 1000 01222346665 7777766543  45788888888887777642 22 1 12232 34568888999999


Q ss_pred             EEEECCCCcceeeEE-e--CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-ceEEEecC----------C
Q 040307          190 RVFDLRDKERSTIIY-E--NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-PVVVLSKH----------E  255 (339)
Q Consensus       190 ~i~d~~~~~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~----------~  255 (339)
                      .-..+....+..... .  .+..+..+..-++.. .+..++.-+.+|. |+-.|+..... .......-          .
T Consensus       160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~-v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP  237 (342)
T PF06433_consen  160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGN-VYSADLSGDSAKFGKPWSLLTDAEKADGWRP  237 (342)
T ss_dssp             EEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSE-EEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred             EEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCE-EEEEeccCCcccccCcccccCccccccCcCC
Confidence            999888543322211 1  111111222334443 4445555688888 88888876321 11111110          1


Q ss_pred             CCeeEEEeccCCCCeEEEEe--------CCC--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC-c
Q 040307          256 GSVNGISWAPLYGRRLCSVA--------DDS--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL-D  324 (339)
Q Consensus       256 ~~v~~~~~~p~~~~~l~~~~--------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~  324 (339)
                      +.-.-+++++... .|.+.-        .|+  .|.++|+.+.+             .+....-..++.+|..+.+.. .
T Consensus       238 GG~Q~~A~~~~~~-rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-------------rv~Ri~l~~~~~Si~Vsqd~~P~  303 (342)
T PF06433_consen  238 GGWQLIAYHAASG-RLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-------------RVARIPLEHPIDSIAVSQDDKPL  303 (342)
T ss_dssp             -SSS-EEEETTTT-EEEEEEEE--TT-TTS-EEEEEEEETTTTE-------------EEEEEEEEEEESEEEEESSSS-E
T ss_pred             cceeeeeeccccC-eEEEEecCCCCCCccCCceEEEEEECCCCe-------------EEEEEeCCCccceEEEccCCCcE
Confidence            2334577776553 333322        223  35555555555             444444455788999998765 5


Q ss_pred             eEEEe-cCCeEEEEeC
Q 040307          325 WIAIA-FVNKLQLLKV  339 (339)
Q Consensus       325 l~~~~-~d~~v~~w~v  339 (339)
                      |++.+ .++.|.+|+.
T Consensus       304 L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  304 LYALSAGDGTLDVYDA  319 (342)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEEcCCCCeEEEEeC
Confidence            66665 5789999873

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.54  E-value=0.00012  Score=55.86  Aligned_cols=140  Identities=13%  Similarity=-0.056  Sum_probs=83.7

Q ss_pred             EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCe
Q 040307          179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSV  258 (339)
Q Consensus       179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v  258 (339)
                      .+...+.|+.|+-++++..+.......      .+....--+..+.-+++|+.++. |++|.....+.....+..-...|
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~------~~~e~~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~~e~i  104 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSER------FIDEGQRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSGEESI  104 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhh------hhhcceeecccCceEEeecccce-EEEecCCccchHHHhhhcccccc
Confidence            445556788888888887653222111      11111111235677889999998 99998774333222222222233


Q ss_pred             eEE-EeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeeccc-ceeEEEEecCCCCceEEE--ecCCe
Q 040307          259 NGI-SWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSM-AEINVVRWSPLELDWIAI--AFVNK  333 (339)
Q Consensus       259 ~~~-~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~i~~~~~~p~~~~l~~~--~~d~~  333 (339)
                      -++ .--.++ .+..+++.||.|+.|++...+             .. ....|. .++..+..+-.++.+..+  +.|..
T Consensus       105 ~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k-------------~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~  170 (238)
T KOG2444|consen  105 DLGIPNGRDS-SLGCVGAQDGRIRACNIKPNK-------------VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV  170 (238)
T ss_pred             eecccccccc-ceeEEeccCCceeeeccccCc-------------eeeeeccccCCCcceeEEecCCceEEeeccccchh
Confidence            222 222233 488899999999999999887             23 233444 556666666666666655  77888


Q ss_pred             EEEEeC
Q 040307          334 LQLLKV  339 (339)
Q Consensus       334 v~~w~v  339 (339)
                      ++.|+|
T Consensus       171 ~k~W~v  176 (238)
T KOG2444|consen  171 LKKWNV  176 (238)
T ss_pred             hhhcch
Confidence            888875

>smart00320 WD40 WD40 repeats

Probab=97.52  E-value=0.00044  Score=36.83  Aligned_cols=37  Identities=30%  Similarity=0.484  Sum_probs=31.4

Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD  152 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d  152 (339)
                      +...+..|.     ..|.++.|++ ++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~-----~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHT-----GPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecC-----CceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            455566666     7899999997 779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.52  E-value=0.031  Score=44.62  Aligned_cols=189  Identities=14%  Similarity=0.129  Sum_probs=110.2

Q ss_pred             ecCC--CCceEEEEcCCCCCCCCCeEEEeC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307           68 FDHP--YTPTNIAFFPSEETLNPDIVATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT  141 (339)
Q Consensus        68 ~~~~--~~v~~l~~~~~~~~~~~~~la~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  141 (339)
                      ++|.  .-...+.|.+++     .++-+.|  +  .|+.+|+.+++......+...-      ---.++..  ++++..-
T Consensus        39 ypHd~~aFTQGL~~~~~g-----~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~------FgEGit~~--~d~l~qL  105 (264)
T PF05096_consen   39 YPHDPTAFTQGLEFLDDG-----TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY------FGEGITIL--GDKLYQL  105 (264)
T ss_dssp             EE--TT-EEEEEEEEETT-----EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--------EEEEEEE--TTEEEEE
T ss_pred             CCCCCcccCccEEecCCC-----EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc------cceeEEEE--CCEEEEE
Confidence            3444  345788887787     6777776  3  9999999999744444443311      12244443  4566667


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEEEe
Q 040307          142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLEWN  219 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~  219 (339)
                      .-.++...+||.++.+.+.++. ....=+.++.. ++.|+.......|+++|..+.+....+....  ..-..++-+.|.
T Consensus       106 TWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i  183 (264)
T PF05096_consen  106 TWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI  183 (264)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEE--SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred             EecCCeEEEEccccceEEEEEe-cCCcceEEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence            7788999999999998888875 34556777754 5666666667789999988766443332210  111234556665


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe---------------cCCCCeeEEEeccCCCCeEEEEe
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS---------------KHEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                        +|.+.|-.-.... |...|..+ +.....+.               ....-.+.||+.|..+.+++||-
T Consensus       184 --~G~IyANVW~td~-I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  184 --NGKIYANVWQTDR-IVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             --TTEEEEEETTSSE-EEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             --cCEEEEEeCCCCe-EEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence              5555555444444 66666665 33332221               01345789999999866677763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.49  E-value=0.018  Score=45.23  Aligned_cols=123  Identities=11%  Similarity=-0.067  Sum_probs=84.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL  214 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  214 (339)
                      ...+++.|+..+.+.--|..+|+...... ....+.+-+.--+++++.|+..|.+++.+..+++..-.+...    ..|.
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----~~vk   96 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----ETVK   96 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh----hhhc
Confidence            45688889999999999999998665432 333444433333778999999999999999999755444333    1222


Q ss_pred             -EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc
Q 040307          215 -RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP  265 (339)
Q Consensus       215 -~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p  265 (339)
                       +....+ ++.++..|+.|++ .+..|.++ ...+.+.+...+...+-+..|
T Consensus        97 ~~a~~d~-~~glIycgshd~~-~yalD~~~-~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   97 VRAQCDF-DGGLIYCGSHDGN-FYALDPKT-YGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             cceEEcC-CCceEEEecCCCc-EEEecccc-cceEEecccCCceeccceecC
Confidence             233444 8899999999999 99999987 555666554444333444555

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.46  E-value=0.066  Score=46.95  Aligned_cols=159  Identities=18%  Similarity=0.232  Sum_probs=89.0

Q ss_pred             CEEEEEEcCCCCCEEEEE-eCCC----eEEEEECCCCeeeeee-eccCCceeEEEec-CCcEEEEEeCCC----------
Q 040307          125 AITSFDWAGFDTRRVATC-SVDT----TCVIWDIDREILETQL-VAHDREVYDISWG-GFNVFASVSGDC----------  187 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~-~~d~----~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~d~----------  187 (339)
                      .+..+.++| +++++|.+ +..|    .|+++|+++++.+... ...  ....+.|. +++.|+....+.          
T Consensus       125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            344678898 88888865 3333    5999999999765432 221  12239999 666666554333          


Q ss_pred             -cEEEEECCCCcce-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC---eEEEEecCCC---CCceEEEecCCCCee
Q 040307          188 -SVRVFDLRDKERS-TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN---KVVVLDIRFP---TNPVVVLSKHEGSVN  259 (339)
Q Consensus       188 -~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~---~i~i~d~~~~---~~~~~~~~~~~~~v~  259 (339)
                       .|+.|.+.+.... ..+++.+........+..++ ++++|+.....+.   .+.+.|+...   ......+......+.
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence             3788888877644 45555533332367888887 8888776555443   3788888763   233444444444443


Q ss_pred             -EEEeccCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307          260 -GISWAPLYGRRLCSVAD---DSRALIWEVVGPG  289 (339)
Q Consensus       260 -~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~  289 (339)
                       .+... .+ .+++....   .+.|.-.++....
T Consensus       281 ~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  281 YYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             EEEEcc-CC-EEEEeeCCCCCCcEEEEecccccc
Confidence             34333 43 34444432   2345444555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.43  E-value=0.041  Score=50.06  Aligned_cols=233  Identities=14%  Similarity=0.153  Sum_probs=125.0

Q ss_pred             ccEEEEeeecc--ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-------cEEEE
Q 040307           32 KSRLAVGSFLE--DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-------SLRLW  101 (339)
Q Consensus        32 ~~~la~g~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-------~i~iw  101 (339)
                      +.++++|+...  ..-..+..||  ..........  .......-.+++...+      .+.++|| +       .+..|
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd--~~~~~w~~~a--~m~~~r~~~~~~~~~~------~lYv~GG~~~~~~~l~~ve~Y  354 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYD--PKTNEWSSLA--PMPSPRCRVGVAVLNG------KLYVVGGYDSGSDRLSSVERY  354 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEec--CCcCcEeecC--CCCcccccccEEEECC------EEEEEccccCCCcccceEEEe
Confidence            67788888411  1224667744  4444333311  2234444556666554      5777775 2       67888


Q ss_pred             eecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe-----EEEEECCCCeeeeeeeccCCceeE--EEe
Q 040307          102 EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT-----CVIWDIDREILETQLVAHDREVYD--ISW  174 (339)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-----v~i~d~~~~~~~~~~~~~~~~v~~--~~~  174 (339)
                      |...+++.....+....     ... +++.  .++.+.+.|+.||.     |-.||..+.+-- ...........  ++-
T Consensus       355 D~~~~~W~~~a~M~~~R-----~~~-~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~~r~~~gv~~  425 (571)
T KOG4441|consen  355 DPRTNQWTPVAPMNTKR-----SDF-GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLTRRSGHGVAV  425 (571)
T ss_pred             cCCCCceeccCCccCcc-----ccc-eeEE--ECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCcceeeeEEEE
Confidence            88888765555444332     111 2333  27899999999874     677887766411 11111112222  222


Q ss_pred             cCCcEEEEEeCCC------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCC
Q 040307          175 GGFNVFASVSGDC------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFP  244 (339)
Q Consensus       175 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~  244 (339)
                      .++.+.++||.++      ++..||..+..-... ......... ..++.-  ++.+.+.|+.++.    .+..||....
T Consensus       426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-~~M~~~R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-APMNTRRSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             ECCEEEEEcCcCCCccccceEEEEcCCCCceeec-CCccccccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCCCC
Confidence            2688889888664      467888887762221 111111111 224432  7788888888762    3777887763


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC-----cEEEEEecCCC
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS-----RALIWEVVGPG  289 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~v~iwd~~~~~  289 (339)
                      .  ...+..-......+.....+.++.++|+.||     +|..||..+.+
T Consensus       502 ~--W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  502 Q--WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             c--eeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            2  2222212222223323333336888888776     46666555544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.0044  Score=53.38  Aligned_cols=143  Identities=8%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC--------CcEEEEEeCCCcEEEEECCCCcceee-EEeCC-
Q 040307          138 RVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG--------FNVFASVSGDCSVRVFDLRDKERSTI-IYENP-  207 (339)
Q Consensus       138 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~-  207 (339)
                      ++.++.....++-.|++.|+.+.....+.. |+-+.+.|        ...-+.|=.+..|.-||.|-...... ..+.. 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            445566667888899999999988876665 66666652        12224455688899999996553211 11110 


Q ss_pred             -CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          208 -VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       208 -~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                       .......|.+-  ....++++|+.+|. |++||- .+......+.+-..+|..|..+.+|. +|+..+ +..+.+-++.
T Consensus       427 y~~k~nFsc~aT--T~sG~IvvgS~~Gd-IRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-wil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFAT--TESGYIVVGSLKGD-IRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-WILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccceeee--cCCceEEEeecCCc-EEeehh-hhhhhhhcccccCCceeeEEeeccCc-EEEEec-ccEEEEEEEe
Confidence             11233444443  35678999999999 999997 33555566788888999999999994 655444 5677777766


Q ss_pred             C
Q 040307          287 G  287 (339)
Q Consensus       287 ~  287 (339)
                      -
T Consensus       501 ~  501 (644)
T KOG2395|consen  501 I  501 (644)
T ss_pred             c
Confidence            5

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.044  Score=43.80  Aligned_cols=211  Identities=12%  Similarity=0.098  Sum_probs=120.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      .........++|+|...    .-++.+-.   ...++|.+..+  ...++...+..   .-.-.-.||| ++.+|...-.
T Consensus        64 ~~lpaR~Hgi~~~p~~~----ravafARrPGtf~~vfD~~~~~--~pv~~~s~~~R---HfyGHGvfs~-dG~~LYATEn  133 (366)
T COG3490          64 TALPARGHGIAFHPALP----RAVAFARRPGTFAMVFDPNGAQ--EPVTLVSQEGR---HFYGHGVFSP-DGRLLYATEN  133 (366)
T ss_pred             eecccccCCeecCCCCc----ceEEEEecCCceEEEECCCCCc--CcEEEecccCc---eeecccccCC-CCcEEEeecC
Confidence            34455667889999874    56666653   77889988876  33333222111   0111235887 9988887644


Q ss_pred             -----CCeEEEEECCCC-eeeeeeeccCCceeEEEec-CCcEEEEEeC------------------CCcEEEEECCCCcc
Q 040307          145 -----DTTCVIWDIDRE-ILETQLVAHDREVYDISWG-GFNVFASVSG------------------DCSVRVFDLRDKER  199 (339)
Q Consensus       145 -----d~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------------------d~~i~i~d~~~~~~  199 (339)
                           -|.|=|||.+.+ ..+..+..|.-....+.|. |+..++.+..                  .-++.+.|..++..
T Consensus       134 dfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l  213 (366)
T COG3490         134 DFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL  213 (366)
T ss_pred             CCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence                 367889998744 2455677777777888998 8888877643                  11233334333332


Q ss_pred             eeeE-EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCe---EEEEecCCCCCceEEEec-------CCCCeeEEEeccCCC
Q 040307          200 STII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNK---VVVLDIRFPTNPVVVLSK-------HEGSVNGISWAPLYG  268 (339)
Q Consensus       200 ~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~---i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~  268 (339)
                      ..+. .....+...+..++..+ ++..++.+-..|-.   --+.-....++++.-+..       ....|-+|+.+.+.+
T Consensus       214 iekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g  292 (366)
T COG3490         214 IEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG  292 (366)
T ss_pred             hhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence            2111 11112345677777775 66666555444320   001111112333333322       123577888887764


Q ss_pred             CeEEEEeCCCcEEEEEecCCC
Q 040307          269 RRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       269 ~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+.+|.-..+...+||..++.
T Consensus       293 lV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         293 LVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             eEEEecCCCCeEEEEEcCCCc
Confidence            344444466678899999987

>PHA02713 hypothetical protein; Provisional

Probab=97.40  E-value=0.025  Score=51.42  Aligned_cols=185  Identities=8%  Similarity=-0.005  Sum_probs=97.6

Q ss_pred             CeEEEeC-C-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCC
Q 040307           89 DIVATSG-D-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDR  155 (339)
Q Consensus        89 ~~la~~~-~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~  155 (339)
                      .+++.|| +       .+..||..++.+.....+....     ... +++..  ++.+.+.||.++     .+..||..+
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R-----~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR-----CRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-----hce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCC
Confidence            6777766 1       4778888777654433332211     112 23332  678888888764     478899877


Q ss_pred             Cee--eeeeeccCCceeEEEecCCcEEEEEeCCC-----------------------cEEEEECCCCcceeeEEeCCCCC
Q 040307          156 EIL--ETQLVAHDREVYDISWGGFNVFASVSGDC-----------------------SVRVFDLRDKERSTIIYENPVQD  210 (339)
Q Consensus       156 ~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----------------------~i~i~d~~~~~~~~~~~~~~~~~  210 (339)
                      .+-  +..+...... .+++..++.+.+.|+.++                       .+..||..+.+-... ...+...
T Consensus       377 ~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r  454 (557)
T PHA02713        377 DKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGT  454 (557)
T ss_pred             CeEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCCccc
Confidence            641  1122111111 122223688888887653                       477788877652211 1111111


Q ss_pred             CCeEEEEEecCCCCeEEEEeeCC-----CeEEEEecCC-C-CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC--cEE
Q 040307          211 CPLLRLEWNKADPRFMATVGMDS-----NKVVVLDIRF-P-TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS--RAL  281 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~-----~~i~i~d~~~-~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~  281 (339)
                      .. .+++..  ++++.+.|+.++     ..+..||..+ . ...+..+.........+.+  ++ ++.++|+.++  .+.
T Consensus       455 ~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        455 IR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQD  528 (557)
T ss_pred             cc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehh
Confidence            11 122322  667777777542     1267898875 2 2223333322222222222  44 6888999888  677


Q ss_pred             EEEecCCC
Q 040307          282 IWEVVGPG  289 (339)
Q Consensus       282 iwd~~~~~  289 (339)
                      .||..+.+
T Consensus       529 ~yd~~~~~  536 (557)
T PHA02713        529 TFNVYTYE  536 (557)
T ss_pred             hcCccccc
Confidence            77777765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.39  E-value=0.00057  Score=38.62  Aligned_cols=38  Identities=13%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFN   54 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~   54 (339)
                      .+.......+|.+++|+|.   .++||.|+    .+|.|.||+++
T Consensus         4 ~~~~k~l~~~v~~~~w~P~---mdLiA~~t----~~g~v~v~Rl~   41 (47)
T PF12894_consen    4 QLGEKNLPSRVSCMSWCPT---MDLIALGT----EDGEVLVYRLN   41 (47)
T ss_pred             eecccCCCCcEEEEEECCC---CCEEEEEE----CCCeEEEEECC
Confidence            3445556778999999999   99999999    79999998874

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.34  E-value=0.074  Score=48.51  Aligned_cols=194  Identities=9%  Similarity=0.008  Sum_probs=98.0

Q ss_pred             CeeEEEeeecCCcccEEEEeee--ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           19 PISTVAWSVRHDRKSRLAVGSF--LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~--~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      .+.+.+++|+   ++.+|+...  ..+.+..-.||-.+..+.. ..   +..+  .....-.|+|++     ..|++..+
T Consensus       351 ~vsspaiSpd---G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~---lt~g--~~~t~PsWspDG-----~~lw~v~d  416 (591)
T PRK13616        351 NITSAALSRS---GRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ---VLEG--HSLTRPSWSLDA-----DAVWVVVD  416 (591)
T ss_pred             CcccceECCC---CCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee---eecC--CCCCCceECCCC-----CceEEEec
Confidence            5678899999   888877652  1111344455545543322 22   1122  247888999998     56655542


Q ss_pred             ---cEEEEeecCCcceeEE--EeecCCCc-cCCCCEEEEEEcCCCCCEEEEEeCCCeEEE---EECCCCe-ee---eeee
Q 040307           97 ---SLRLWEIHDDRTELKS--LLNSNKTS-EFSSAITSFDWAGFDTRRVATCSVDTTCVI---WDIDREI-LE---TQLV  163 (339)
Q Consensus        97 ---~i~iw~~~~~~~~~~~--~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i---~d~~~~~-~~---~~~~  163 (339)
                         .+++.+.....  .+.  .+.+.... .....|..+.|+| |+..++... ++.|++   -....++ .+   ..+.
T Consensus       417 g~~~~~v~~~~~~g--ql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~  492 (591)
T PRK13616        417 GNTVVRVIRDPATG--QLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG  492 (591)
T ss_pred             CcceEEEeccCCCc--eEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee
Confidence               23333322111  111  11110000 1125799999998 999888766 578877   4434443 11   1122


Q ss_pred             -ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          164 -AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       164 -~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                       .-...+.++.|.++..|+.+..++...+|.+.-...............++..++=++   ..++....++
T Consensus       493 ~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~---~~iyv~~~~g  560 (591)
T PRK13616        493 PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP---STVYVTDARA  560 (591)
T ss_pred             cccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC---ceEEEEcCCc
Confidence             233346889999433355655555444554432221111111111235666676654   2344444444

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.34  E-value=0.064  Score=44.05  Aligned_cols=226  Identities=14%  Similarity=0.185  Sum_probs=124.2

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCccee
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTEL  110 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~  110 (339)
                      ++.|++|+    .+| +.+++.+.. .....     ..+...|..+...|+-     ++|++-+| .+++++++.-....
T Consensus         7 ~~~L~vGt----~~G-l~~~~~~~~-~~~~~-----i~~~~~I~ql~vl~~~-----~~llvLsd~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    7 GDRLLVGT----EDG-LYVYDLSDP-SKPTR-----ILKLSSITQLSVLPEL-----NLLLVLSDGQLYVYDLDSLEPVS   70 (275)
T ss_pred             CCEEEEEE----CCC-EEEEEecCC-cccee-----EeecceEEEEEEeccc-----CEEEEEcCCccEEEEchhhcccc
Confidence            77899999    566 888777221 12221     2233349999999988     66666666 99999987654211


Q ss_pred             EEE-ee-------cCCCccCCCCEEEEE-EcCCCCCEEEEEeCCCeEEEEECCCC-----eeeeeeeccCCceeEEEecC
Q 040307          111 KSL-LN-------SNKTSEFSSAITSFD-WAGFDTRRVATCSVDTTCVIWDIDRE-----ILETQLVAHDREVYDISWGG  176 (339)
Q Consensus       111 ~~~-~~-------~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~  176 (339)
                      ... ..       .+. ......+...+ -....+...++.....+|.+|.....     +..+.+. -...+.+++|. 
T Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~-  147 (275)
T PF00780_consen   71 TSAPLAFPKSRSLPTK-LPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL-  147 (275)
T ss_pred             cccccccccccccccc-ccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe-
Confidence            100 00       000 00013344444 11224444444555669998887553     3445553 45788999998 


Q ss_pred             CcEEEEEeCCCcEEEEECCCCcceeeEEeCCC---------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307          177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPV---------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP  247 (339)
Q Consensus       177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~  247 (339)
                      ++.++.|..+ ...+.|+.++...........         ...++..+...  ++.+|++.  +.. -.+.|..  +++
T Consensus       148 ~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~-g~fv~~~--G~~  219 (275)
T PF00780_consen  148 GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNI-GVFVNKN--GEP  219 (275)
T ss_pred             CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cce-EEEEcCC--CCc
Confidence            6666666644 588899997664333211100         11233333443  45666543  332 3334443  322


Q ss_pred             e--EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          248 V--VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       248 ~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .  ..+.- .....++++..  + +|+.... +.|.||++.+++
T Consensus       220 ~r~~~i~W-~~~p~~~~~~~--p-yli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  220 SRKSTIQW-SSAPQSVAYSS--P-YLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             CcccEEEc-CCchhEEEEEC--C-EEEEECC-CEEEEEECcCCc
Confidence            2  23333 33556666643  3 5555554 559999999987

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=97.24  E-value=0.029  Score=51.04  Aligned_cols=141  Identities=10%  Similarity=0.053  Sum_probs=79.2

Q ss_pred             CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---------------
Q 040307           89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT---------------  146 (339)
Q Consensus        89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---------------  146 (339)
                      ++.+.||.       .+..||..++++.....+....     .....+..   ++.+.+.|+.++               
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~  424 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-----SSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDM  424 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-----ccccEEEE---CCEEEEEeCCCcccccccccccccccc
Confidence            67777762       5888999888765544443322     11112222   678888887653               


Q ss_pred             --------eEEEEECCCCee--eeeeeccCCceeEEEecCCcEEEEEeCC------CcEEEEECCC-CcceeeEEeCCCC
Q 040307          147 --------TCVIWDIDREIL--ETQLVAHDREVYDISWGGFNVFASVSGD------CSVRVFDLRD-KERSTIIYENPVQ  209 (339)
Q Consensus       147 --------~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~  209 (339)
                              .+..||.++.+-  +..+..... -.+++..++.+.+.|+.+      ..+..||..+ .+- ......+..
T Consensus       425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-~~~~~m~~~  502 (557)
T PHA02713        425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW-ELITTTESR  502 (557)
T ss_pred             cccccccceEEEECCCCCeEeecCCCCcccc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe-eEccccCcc
Confidence                    477888877641  222211111 122333367788888764      2467899887 442 222222112


Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCC
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRF  243 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~  243 (339)
                      ... ..++..  ++.+.++|+.++  . +..||..+
T Consensus       503 r~~-~~~~~~--~~~iyv~Gg~~~~~~-~e~yd~~~  534 (557)
T PHA02713        503 LSA-LHTILH--DNTIMMLHCYESYML-QDTFNVYT  534 (557)
T ss_pred             ccc-ceeEEE--CCEEEEEeeecceee-hhhcCccc
Confidence            222 233332  788999999888  5 77788765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.084  Score=42.48  Aligned_cols=162  Identities=12%  Similarity=0.171  Sum_probs=100.9

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..+.++.|+| +.+.|++......-.|+=..+|+.++++.-. -.....+.|. ++.+.++--.++.+.++.+.......
T Consensus        86 ~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            5699999999 6676666666666666666678877776421 2234568888 66666666778888888776653211


Q ss_pred             e-------EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE--EEecC-------CCCeeEEEecc
Q 040307          202 I-------IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV--VLSKH-------EGSVNGISWAP  265 (339)
Q Consensus       202 ~-------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~--~~~~~-------~~~v~~~~~~p  265 (339)
                      .       +..........-.++|.|.+..++++--.+-  +.||.+......+.  ....+       -..|.++.|++
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            1       1111222556788999996666665544444  56665543221111  11111       13577889998


Q ss_pred             CCCCeEEEEeCCCcEEEEEecCC
Q 040307          266 LYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       266 ~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      ..+.+|+-+.+++.+.-.|....
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCCcEEEEecCCceEEEEecCCC
Confidence            76667777777777777766654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.17  E-value=0.19  Score=46.02  Aligned_cols=184  Identities=15%  Similarity=0.105  Sum_probs=100.3

Q ss_pred             CCEEEEEEcCCCCCEEEEEe------CCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC--------
Q 040307          124 SAITSFDWAGFDTRRVATCS------VDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD--------  186 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~------~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------  186 (339)
                      ..+...+.+| +++.++...      .|.  .|.+++.. +.. ..+.. ....+.-.|+ ++..+++....        
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEec
Confidence            4567889998 888877765      243  45555642 222 33322 2237788899 56777666532        


Q ss_pred             ----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE---EecCCCCC-ce---EEEe-cC
Q 040307          187 ----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV---LDIRFPTN-PV---VVLS-KH  254 (339)
Q Consensus       187 ----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i---~d~~~~~~-~~---~~~~-~~  254 (339)
                          +.+.+.++..+....      .....|..+.|+| +|..++... ++. |++   -.... +. .+   ..+. .-
T Consensus       426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~-v~Va~Vvr~~~-G~~~l~~~~~l~~~l  495 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGK-VYLAVVEQTED-GQYALTNPREVGPGL  495 (591)
T ss_pred             cCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCE-EEEEEEEeCCC-CceeecccEEeeccc
Confidence                222222333222111      1245799999999 888777655 344 777   33222 22 11   1122 22


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCe
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNK  333 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~  333 (339)
                      ...+.++.|.+++. + +++..++...+|.+.-...          .... .......++..|+=+++  .++.+..++.
T Consensus       496 ~~~~~~l~W~~~~~-L-~V~~~~~~~~v~~v~vDG~----------~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        496 GDTAVSLDWRTGDS-L-VVGRSDPEHPVWYVNLDGS----------NSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             CCccccceEecCCE-E-EEEecCCCCceEEEecCCc----------cccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            33468899999983 4 4555566666777665550          0111 11112556777777763  3555555554


Q ss_pred             EE
Q 040307          334 LQ  335 (339)
Q Consensus       334 v~  335 (339)
                      ++
T Consensus       562 ~~  563 (591)
T PRK13616        562 LQ  563 (591)
T ss_pred             EE
Confidence            44

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.092  Score=42.23  Aligned_cols=155  Identities=16%  Similarity=0.137  Sum_probs=104.5

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      .-+..+.++   +++...+..+.-++|.|+.+...-..+.  .-.+-..++..+ +++...+..|.-+.+.|+.+++.+.
T Consensus        87 ~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs-Gn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS-GNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec-CCEEEEeeccCcEEEEECCCCCCce
Confidence            456677876   4677778888899999998765333221  112334455444 8888888877788999999988776


Q ss_pred             eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC-CeeEEEeccCCCCeEEEEeCCCcE
Q 040307          202 IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG-SVNGISWAPLYGRRLCSVADDSRA  280 (339)
Q Consensus       202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v  280 (339)
                      ..............++.   .|++-..+..+++ +.+-|+..+..|...-....+ .+.++..+++. -+++...  .-+
T Consensus       163 lagrya~~~~d~~~v~I---SGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~vvy~--egv  235 (370)
T COG5276         163 LAGRYALPGGDTHDVAI---SGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYLVVYD--EGV  235 (370)
T ss_pred             eeeeeccCCCCceeEEE---ecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEEEEcc--cce
Confidence            65444334444567776   4678888889999 999999987777654333333 78888888875 3444443  335


Q ss_pred             EEEEecCCC
Q 040307          281 LIWEVVGPG  289 (339)
Q Consensus       281 ~iwd~~~~~  289 (339)
                      .+-|.....
T Consensus       236 livd~s~~s  244 (370)
T COG5276         236 LIVDVSGPS  244 (370)
T ss_pred             EEEecCCCC
Confidence            555555544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.15  E-value=0.23  Score=46.66  Aligned_cols=224  Identities=9%  Similarity=0.072  Sum_probs=129.1

Q ss_pred             CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------------CeEEEEE
Q 040307           88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------------TTCVIWD  152 (339)
Q Consensus        88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------~~v~i~d  152 (339)
                      |+.|+++.+ .+++..++.-+....+++.-+      .....+++.+ ....+++.+..              ..++++|
T Consensus       684 ~d~l~~~~~~~l~i~tid~iqkl~irtvpl~------~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD  756 (1096)
T KOG1897|consen  684 PDSLASANGGALTIGTIDEIQKLHIRTVPLG------ESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD  756 (1096)
T ss_pred             CceEEEecCCceEEEEecchhhcceeeecCC------CChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEec
Confidence            345555553 555555554332233333333      3455667764 33444433321              2466777


Q ss_pred             CCCCeeeeeee--ccC--CceeEEEec-C-CcEEEEEeC----------CCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307          153 IDREILETQLV--AHD--REVYDISWG-G-FNVFASVSG----------DCSVRVFDLRDKERSTIIYENPVQDCPLLRL  216 (339)
Q Consensus       153 ~~~~~~~~~~~--~~~--~~v~~~~~~-~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  216 (339)
                      -++.+.+...+  ...  -.+.++.|. + +.++++|..          .|.|.+|............+. .-++.+.++
T Consensus       757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL  835 (1096)
T KOG1897|consen  757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYAL  835 (1096)
T ss_pred             CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeeh
Confidence            76665433221  111  234555677 3 667777753          478888888774433333322 123455555


Q ss_pred             EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307          217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG  296 (339)
Q Consensus       217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  296 (339)
                      .-  .+|+++|.-  +.. |++|+... .+.++.-..+..++..+...-.+ ..++.|.--+++.+-..+..+       
T Consensus       836 ~~--fngkllA~I--n~~-vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~~e-------  901 (1096)
T KOG1897|consen  836 VE--FNGKLLAGI--NQS-VRLYEWTT-ERELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKGDE-------  901 (1096)
T ss_pred             hh--hCCeEEEec--CcE-EEEEEccc-cceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEeccC-------
Confidence            54  377777754  344 99999987 44566666677889999988888 499999988888888877765       


Q ss_pred             CCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                        +........-+..+++++.+-.+.. ++.+-.+|.+.+
T Consensus       902 --g~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~  938 (1096)
T KOG1897|consen  902 --GNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFT  938 (1096)
T ss_pred             --CceEEeehhhCccceeeEEEecCce-EEeecccccEEE
Confidence              0111222234667788888766654 444445555544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.13  E-value=0.0014  Score=50.22  Aligned_cols=145  Identities=12%  Similarity=-0.014  Sum_probs=86.4

Q ss_pred             EEEEEeCCCeEEEEECCCCeeee-eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307          138 RVATCSVDTTCVIWDIDREILET-QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL  216 (339)
Q Consensus       138 ~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  216 (339)
                      .+...+.+|.|.-++++..+... .-..+...-.-+.  -+..+++|+.+|.|.+|...........+..  ....+.++
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--GEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc--cCceEEeecccceEEEecCCccchHHHhhhc--ccccceec
Confidence            44555678888877776543211 1111221111111  2678899999999999988733222222221  12233333


Q ss_pred             EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC-CCeeEEEeccCCCCeEEEE--eCCCcEEEEEecCCC
Q 040307          217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-GSVNGISWAPLYGRRLCSV--ADDSRALIWEVVGPG  289 (339)
Q Consensus       217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~--~~dg~v~iwd~~~~~  289 (339)
                      .-.-.++.+..+++.++. |+.|++.. .+.+.....|. .++.....+..+ .+++.+  |.|..++.|++....
T Consensus       108 Ip~~~~~~~~c~~~~dg~-ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGR-IRACNIKP-NKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             cccccccceeEEeccCCc-eeeecccc-CceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence            322245568889999999 99999875 55566666666 455555555555 477776  778888888887655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.13  E-value=0.11  Score=42.84  Aligned_cols=285  Identities=10%  Similarity=0.019  Sum_probs=127.7

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--CCCceEEEEcCCCCC
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--PYTPTNIAFFPSEET   85 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~   85 (339)
                      .-+........++.+|.|...   ..-+|+|.     .+.|.-  -...+........- ...  .-...++.|..+   
T Consensus         7 ~W~~v~l~t~~~l~dV~F~d~---~~G~~VG~-----~g~il~--T~DGG~tW~~~~~~-~~~~~~~~l~~I~f~~~---   72 (302)
T PF14870_consen    7 SWQQVSLPTDKPLLDVAFVDP---NHGWAVGA-----YGTILK--TTDGGKTWQPVSLD-LDNPFDYHLNSISFDGN---   72 (302)
T ss_dssp             -EEEEE-S-SS-EEEEEESSS---S-EEEEET-----TTEEEE--ESSTTSS-EE------S-----EEEEEEEETT---
T ss_pred             CcEEeecCCCCceEEEEEecC---CEEEEEec-----CCEEEE--ECCCCccccccccC-CCccceeeEEEEEecCC---
Confidence            335556667789999999966   77788887     565533  55444444431111 111  123667887643   


Q ss_pred             CCCCeEEEeCCcEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-e
Q 040307           86 LNPDIVATSGDSLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-V  163 (339)
Q Consensus        86 ~~~~~la~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~  163 (339)
                         ..+++|...+.+...+.++ ++.+..-..-.     .....+.... ++ ....++..|.|+. ..+.++.-..+ .
T Consensus        73 ---~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lp-----gs~~~i~~l~-~~-~~~l~~~~G~iy~-T~DgG~tW~~~~~  141 (302)
T PF14870_consen   73 ---EGWIVGEPGLLLHTTDGGKTWERVPLSSKLP-----GSPFGITALG-DG-SAELAGDRGAIYR-TTDGGKTWQAVVS  141 (302)
T ss_dssp             ---EEEEEEETTEEEEESSTTSS-EE----TT-S-----S-EEEEEEEE-TT-EEEEEETT--EEE-ESSTTSSEEEEE-
T ss_pred             ---ceEEEcCCceEEEecCCCCCcEEeecCCCCC-----CCeeEEEEcC-CC-cEEEEcCCCcEEE-eCCCCCCeeEccc
Confidence               4556655455555555444 22221111111     2233343332 33 3333455566543 22334433322 2


Q ss_pred             ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      .-.+.+..+.-+ ++.+++++..-....-||.-...-......   ....+.++.|.| ++.+.+++ ..+. |++=+..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~---~~~riq~~gf~~-~~~lw~~~-~Gg~-~~~s~~~  215 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN---SSRRIQSMGFSP-DGNLWMLA-RGGQ-IQFSDDP  215 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE-TTTE-EEEEE-T
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC---ccceehhceecC-CCCEEEEe-CCcE-EEEccCC
Confidence            334567787777 677777765544455677654432222222   246899999998 66665544 4554 7766622


Q ss_pred             CCC----CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEE
Q 040307          243 FPT----NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVR  317 (339)
Q Consensus       243 ~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~  317 (339)
                      ...    +++.......-.+..++|.++++ +.++|+ .|.+ +...+.++          ..+... ...-...++.|.
T Consensus       216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGk----------tW~~~~~~~~~~~n~~~i~  282 (302)
T PF14870_consen  216 DDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGK----------TWQKDRVGENVPSNLYRIV  282 (302)
T ss_dssp             TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTS----------S-EE-GGGTTSSS---EEE
T ss_pred             CCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCc----------cceECccccCCCCceEEEE
Confidence            111    11111111233578999999873 666554 4533 33444444          111111 112345688889


Q ss_pred             ecCCCCceEEEecCCeEEEE
Q 040307          318 WSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       318 ~~p~~~~l~~~~~d~~v~~w  337 (339)
                      |.+..+ -++.+.+|.|.-|
T Consensus       283 f~~~~~-gf~lG~~G~ll~~  301 (302)
T PF14870_consen  283 FVNPDK-GFVLGQDGVLLRY  301 (302)
T ss_dssp             EEETTE-EEEE-STTEEEEE
T ss_pred             EcCCCc-eEEECCCcEEEEe
Confidence            876654 6777888877654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.09  E-value=0.16  Score=43.96  Aligned_cols=155  Identities=11%  Similarity=0.082  Sum_probs=92.7

Q ss_pred             cccEEEEeeeccccCCeEEEEecCCCCCcccc-eeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc-
Q 040307           31 RKSRLAVGSFLEDYSNKIELVNFNPETSDFSA-DNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR-  107 (339)
Q Consensus        31 ~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~-  107 (339)
                      +...+++|+    ..|.++||+-  ....... ...++.....+|..++.-.-..+.....||.-.- .+.||.+.... 
T Consensus        36 ~~d~IivGS----~~G~LrIy~P--~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   36 GSDKIIVGS----YSGILRIYDP--SGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG  109 (418)
T ss_pred             CccEEEEec----cccEEEEEcc--CCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence            367999999    7999999654  3333222 2233556778888887654211111156777664 88889884321 


Q ss_pred             ------ceeEEEeecCCCccCCCCEEEEEEcCC---C-CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307          108 ------TELKSLLNSNKTSEFSSAITSFDWAGF---D-TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G  176 (339)
Q Consensus       108 ------~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~  176 (339)
                            ...+..+..|.-   ......+++-|.   . ..+|+.=+.||.+.+++-+.......+.. ---...+.|+ .
T Consensus       110 ~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~  185 (418)
T PF14727_consen  110 TVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPR  185 (418)
T ss_pred             CcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeec
Confidence                  112222222321   133344444332   2 46888899999999999766543344432 2223346777 5


Q ss_pred             CcEEEEEeCCCcEEEEECC
Q 040307          177 FNVFASVSGDCSVRVFDLR  195 (339)
Q Consensus       177 ~~~l~~~~~d~~i~i~d~~  195 (339)
                      .+.|++++.+..+..|...
T Consensus       186 tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  186 TDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CCEEEEecCceeEEEecHH
Confidence            7788888888888888753

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.18  Score=43.17  Aligned_cols=106  Identities=14%  Similarity=0.258  Sum_probs=70.4

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      ...++|.++.||+|   .+.||+--    .++.|.++++..+.......... ...+..|....|+...     .+....
T Consensus        64 ~d~G~I~SIkFSlD---nkilAVQR----~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s~-----e~A~i~  130 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLD---NKILAVQR----TSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSST-----EIAFIT  130 (657)
T ss_pred             cCCCceeEEEeccC---cceEEEEe----cCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecCe-----eEEEEe
Confidence            34679999999999   99999988    79999998886665444431111 2234458899999876     443333


Q ss_pred             CCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307           95 GDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA  140 (339)
Q Consensus        95 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  140 (339)
                      ...+-+|.+...+ ..++..+.++     ..|+-..|.+ +.+.++
T Consensus       131 ~~G~e~y~v~pek-rslRlVks~~-----~nvnWy~yc~-et~v~L  169 (657)
T KOG2377|consen  131 DQGIEFYQVLPEK-RSLRLVKSHN-----LNVNWYMYCP-ETAVIL  169 (657)
T ss_pred             cCCeEEEEEchhh-hhhhhhhhcc-----cCccEEEEcc-ccceEe
Confidence            3366666665432 2444455555     7888899997 555433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.01  E-value=0.004  Score=35.20  Aligned_cols=30  Identities=13%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDID  154 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~  154 (339)
                      ..|..++|+| ..++||.++.+|.|.++.++
T Consensus        12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            5799999999 99999999999999999983

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.17  Score=42.13  Aligned_cols=152  Identities=11%  Similarity=-0.023  Sum_probs=85.0

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC--
Q 040307          130 DWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN--  206 (339)
Q Consensus       130 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--  206 (339)
                      .|.+..+.++.+--..+.|.-|+..+++ ...+. +.+.+.++... .+..|+++.  ..+.+++.........+...  
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGK-KRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            4666334456666667889999987664 23332 33444555554 455555553  34567777555432222221  


Q ss_pred             CCCCCCeEEEEEecCCCCeEEEEee-----CC---CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CC
Q 040307          207 PVQDCPLLRLEWNKADPRFMATVGM-----DS---NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DD  277 (339)
Q Consensus       207 ~~~~~~v~~~~~~p~~~~~l~~~~~-----d~---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d  277 (339)
                      .......+.+...| +|.+.+....     ..   ..-.||-+...+.....+..+-..-+.++||||+. .|..+. ..
T Consensus       107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~  184 (307)
T COG3386         107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPA  184 (307)
T ss_pred             CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCC
Confidence            11224566788887 6666655333     10   01234544422444555555455667999999995 555554 55


Q ss_pred             CcEEEEEecC
Q 040307          278 SRALIWEVVG  287 (339)
Q Consensus       278 g~v~iwd~~~  287 (339)
                      +.|.-|++..
T Consensus       185 ~~i~r~~~d~  194 (307)
T COG3386         185 NRIHRYDLDP  194 (307)
T ss_pred             CeEEEEecCc
Confidence            7888887774

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.14  Score=41.20  Aligned_cols=196  Identities=13%  Similarity=0.209  Sum_probs=113.1

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      +-...+.++.|+|+..    .++++... .-.|+=...++  .+.++.-..   + .....+.|.. ++++.++-=.++.
T Consensus        83 g~~~nvS~LTynp~~r----tLFav~n~p~~iVElt~~Gd--lirtiPL~g---~-~DpE~Ieyig-~n~fvi~dER~~~  151 (316)
T COG3204          83 GETANVSSLTYNPDTR----TLFAVTNKPAAIVELTKEGD--LIRTIPLTG---F-SDPETIEYIG-GNQFVIVDERDRA  151 (316)
T ss_pred             cccccccceeeCCCcc----eEEEecCCCceEEEEecCCc--eEEEecccc---c-CChhHeEEec-CCEEEEEehhcce
Confidence            3344599999999993    44444444 55555545555  444443211   1 3445677774 6666666666888


Q ss_pred             EEEEECCCCeeee-------ee--ecc-CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE--EeCCCC-----
Q 040307          148 CVIWDIDREILET-------QL--VAH-DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII--YENPVQ-----  209 (339)
Q Consensus       148 v~i~d~~~~~~~~-------~~--~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~-----  209 (339)
                      +.++.+..+....       .+  ..+ +.....++|. ....|+.+-.-.-+.||...........  ...+..     
T Consensus       152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF  231 (316)
T ss_pred             EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence            8888776542111       11  112 4567789999 5667777777777888877644311111  111000     


Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC---------CeeEEEeccCCCCeEEEEeCCCcE
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG---------SVNGISWAPLYGRRLCSVADDSRA  280 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v  280 (339)
                      -..+.++.|++..+.+|+.+.+++. +.-.|..  +.++..+.-+.+         ..-.|+..++|.  |...|+-+..
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~-l~Evd~~--G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~--lYIvSEPnlf  306 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRR-LLEVDLS--GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN--LYIVSEPNLF  306 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCce-EEEEecC--CCeeeeEEeccCCCCCcccCCCcceeEECCCCC--EEEEecCCcc
Confidence            1356788999878888888777776 7777765  344544443222         334567777663  4444444433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.94  E-value=0.17  Score=41.56  Aligned_cols=139  Identities=14%  Similarity=0.156  Sum_probs=81.4

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee------
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ------  161 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~------  161 (339)
                      +.|+.|.+ .+.+++..... ........       ..|..+...| +-+.+++-+ |+.++++++..-.....      
T Consensus         8 ~~L~vGt~~Gl~~~~~~~~~-~~~~i~~~-------~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    8 DRLLVGTEDGLYVYDLSDPS-KPTRILKL-------SSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CEEEEEECCCEEEEEecCCc-cceeEeec-------ceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            56666665 78999983222 13333332       4599999987 555555544 59999999876543321      


Q ss_pred             --------eeccCCceeEEE-ec--CCcEEEEEeCCCcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          162 --------LVAHDREVYDIS-WG--GFNVFASVSGDCSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       162 --------~~~~~~~v~~~~-~~--~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                              .......+...+ -.  .+...+......+|.+|........  ....+. .-...+.+++|.   ++.++.
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v  153 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICV  153 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEEEE
Confidence                    111233455555 11  3444444445568999888764211  111111 123688999997   466777


Q ss_pred             EeeCCCeEEEEecCC
Q 040307          229 VGMDSNKVVVLDIRF  243 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~  243 (339)
                      |..++  ..+.|+.+
T Consensus       154 ~~~~~--f~~idl~~  166 (275)
T PF00780_consen  154 GTSKG--FYLIDLNT  166 (275)
T ss_pred             EeCCc--eEEEecCC
Confidence            66554  88999985

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.034  Score=48.16  Aligned_cols=134  Identities=7%  Similarity=-0.050  Sum_probs=85.8

Q ss_pred             EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC------CCeEEEEeeCCCeEEEEecCCCCC-ceEEE
Q 040307          179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD------PRFMATVGMDSNKVVVLDIRFPTN-PVVVL  251 (339)
Q Consensus       179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~  251 (339)
                      +|.++.....++-.|+..++....-...    ..|.-+.+.|+.      ...-+.|=.+++ |.=||+|-.+. .+...
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~----~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFE----DDINMVDITPDFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeecc----CCcceeeccCCcchhcccccccEEeecCCc-eEEecccccCcceeeee
Confidence            4455556667888888888754443222    235666666521      112234556666 99999987554 23333


Q ss_pred             ecCC----CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307          252 SKHE----GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA  327 (339)
Q Consensus       252 ~~~~----~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  327 (339)
                      ++|.    ....|++-..+|  ++++||.+|.|++||--...            ....+.+...+|..|..+.+|.++++
T Consensus       423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~------------AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRR------------AKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhh------------hhhcccccCCceeeEEeeccCcEEEE
Confidence            3332    234555555565  89999999999999983332            12245567889999999999997777


Q ss_pred             EecC
Q 040307          328 IAFV  331 (339)
Q Consensus       328 ~~~d  331 (339)
                      +|..
T Consensus       489 Tc~t  492 (644)
T KOG2395|consen  489 TCKT  492 (644)
T ss_pred             eccc
Confidence            6654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.87  E-value=0.2  Score=41.40  Aligned_cols=232  Identities=12%  Similarity=0.148  Sum_probs=103.9

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEE
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLR   99 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~   99 (339)
                      ..+|.|..+    ..+++|.     .+.|.-  -...+....... +....++....+....++     ..++.+. .-.
T Consensus        64 l~~I~f~~~----~g~ivG~-----~g~ll~--T~DgG~tW~~v~-l~~~lpgs~~~i~~l~~~-----~~~l~~~-~G~  125 (302)
T PF14870_consen   64 LNSISFDGN----EGWIVGE-----PGLLLH--TTDGGKTWERVP-LSSKLPGSPFGITALGDG-----SAELAGD-RGA  125 (302)
T ss_dssp             EEEEEEETT----EEEEEEE-----TTEEEE--ESSTTSS-EE-----TT-SS-EEEEEEEETT-----EEEEEET-T--
T ss_pred             EEEEEecCC----ceEEEcC-----CceEEE--ecCCCCCcEEee-cCCCCCCCeeEEEEcCCC-----cEEEEcC-CCc
Confidence            566777543    3455555     554433  444455554311 111223444555555554     4444443 233


Q ss_pred             EEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCc
Q 040307          100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFN  178 (339)
Q Consensus       100 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~  178 (339)
                      ||...++...-........     ..+..+.-++ ++.+++++..-....-||.-...-...-..-...|..|.|. ++.
T Consensus       126 iy~T~DgG~tW~~~~~~~~-----gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~  199 (302)
T PF14870_consen  126 IYRTTDGGKTWQAVVSETS-----GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN  199 (302)
T ss_dssp             EEEESSTTSSEEEEE-S---------EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-
T ss_pred             EEEeCCCCCCeeEcccCCc-----ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC
Confidence            4554444312222223323     6788888887 99988888765556677753322111112345789999999 555


Q ss_pred             EEEEEeCCCcEEEEECCC-Ccceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---
Q 040307          179 VFASVSGDCSVRVFDLRD-KERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---  253 (339)
Q Consensus       179 ~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---  253 (339)
                      +.+ ....|.|+.=+... .+.-.. +.........+..++|.+ ++...++|+ .+.  .+..... ++.-.....   
T Consensus       200 lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~--l~~S~Dg-GktW~~~~~~~~  273 (302)
T PF14870_consen  200 LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGT--LLVSTDG-GKTWQKDRVGEN  273 (302)
T ss_dssp             EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT---EEEESST-TSS-EE-GGGTT
T ss_pred             EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-Ccc--EEEeCCC-CccceECccccC
Confidence            544 44888888877221 111111 111111234578999986 666666554 443  2333333 443333332   


Q ss_pred             CCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          254 HEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      -...++.|.|.+.. +-+ ..+.+|.|.=|
T Consensus       274 ~~~n~~~i~f~~~~-~gf-~lG~~G~ll~~  301 (302)
T PF14870_consen  274 VPSNLYRIVFVNPD-KGF-VLGQDGVLLRY  301 (302)
T ss_dssp             SSS---EEEEEETT-EEE-EE-STTEEEEE
T ss_pred             CCCceEEEEEcCCC-ceE-EECCCcEEEEe
Confidence            23467889988664 344 44557766544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.81  E-value=0.26  Score=41.74  Aligned_cols=79  Identities=16%  Similarity=0.057  Sum_probs=43.6

Q ss_pred             ceEEEecCCCCeeEEEeccCC------CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEec
Q 040307          247 PVVVLSKHEGSVNGISWAPLY------GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWS  319 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p~~------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~  319 (339)
                      |+..+..| ..+..+.|.+..      ..++++.-..+.|...++.....         ...... .......+.++++.
T Consensus       245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~r~~~v~~~  314 (331)
T PF07995_consen  245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS---------VTEEEEFLGGFGGRPRDVAQG  314 (331)
T ss_dssp             -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE---------EEEEEEECTTSSS-EEEEEEE
T ss_pred             cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC---------ccceEEccccCCCCceEEEEc
Confidence            44445444 566777776432      13555555566777777765440         001112 22345589999999


Q ss_pred             CCCCceEEEecCCeEE
Q 040307          320 PLELDWIAIAFVNKLQ  335 (339)
Q Consensus       320 p~~~~l~~~~~d~~v~  335 (339)
                      |||..+++...+|.|.
T Consensus       315 pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  315 PDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTSEEEEEE-TTTTEE
T ss_pred             CCCeEEEEECCCCeEe
Confidence            9998777777777763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.29  Score=42.33  Aligned_cols=244  Identities=13%  Similarity=0.115  Sum_probs=145.1

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      ......+...|+   +..+.+...   ..+.+..  .+........  ....+. .....++.++.+.    +.++...+
T Consensus        30 ~~~~~~v~~~~~---g~~~~v~~~---~~~~~~~--~~~~~n~~~~--~~~~g~-~~p~~i~v~~~~~----~vyv~~~~   94 (381)
T COG3391          30 GRGPGGVAVNPD---GTQVYVANS---GSNDVSV--IDATSNTVTQ--SLSVGG-VYPAGVAVNPAGN----KVYVTTGD   94 (381)
T ss_pred             CCCCceeEEcCc---cCEEEEEee---cCceeee--cccccceeee--eccCCC-ccccceeeCCCCC----eEEEecCC
Confidence            345667778888   644444331   2233444  4444222221  110111 4456788888884    56666643


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                        .|.+.|.....  ........      .....++++| +++.+..+..   ++++.+.|..+.+.......-..+ ..
T Consensus        95 ~~~v~vid~~~~~--~~~~~~vG------~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~  164 (381)
T COG3391          95 SNTVSVIDTATNT--VLGSIPVG------LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG  164 (381)
T ss_pred             CCeEEEEcCcccc--eeeEeeec------cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence              99999977665  33333321      2345789998 7766666555   689999999888877775433334 78


Q ss_pred             EEec-CCcEEE-EEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEecCCCC
Q 040307          172 ISWG-GFNVFA-SVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLDIRFPT  245 (339)
Q Consensus       172 ~~~~-~~~~l~-~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~  245 (339)
                      +++. +++.+. +-..++.|.+.|........ .....-........+.++| ++..+.+.....   . +...|... .
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~-v~~id~~~-~  241 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNN-VLKIDTAT-G  241 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCce-EEEEeCCC-c
Confidence            8898 676444 44578999999977665331 1000001123456788998 777655544443   5 88888876 3


Q ss_pred             CceEE-EecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCC
Q 040307          246 NPVVV-LSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPG  289 (339)
Q Consensus       246 ~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~  289 (339)
                      ..... ..........+..+|+|. .+.+. +..+.+.+-|.....
T Consensus       242 ~v~~~~~~~~~~~~~~v~~~p~g~-~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         242 NVTATDLPVGSGAPRGVAVDPAGK-AAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             eEEEeccccccCCCCceeECCCCC-EEEEEecCCCeEEEEeCCCCc
Confidence            22222 121111456789999994 66655 445788888887765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.3  Score=42.32  Aligned_cols=195  Identities=11%  Similarity=0.050  Sum_probs=113.1

Q ss_pred             EEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceee
Q 040307          126 ITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       126 i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~  202 (339)
                      ...+...| .+..+.... ....+...+............-...-..++.+ .++ .++....+..|.+.|.........
T Consensus        33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CceeEEcC-ccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            44666776 553333332 22345555544222111111111233466676 444 666666678999999877775555


Q ss_pred             EEeCCCCCCCeEEEEEecCCCCeEEEEee---CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307          203 IYENPVQDCPLLRLEWNKADPRFMATVGM---DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR  279 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  279 (339)
                      ....    .....++++| +++.+.++..   ++. +.+.|... .+...+...-..+ ..++++|++.+.+++-..++.
T Consensus       112 ~~vG----~~P~~~~~~~-~~~~vYV~n~~~~~~~-vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~  183 (381)
T COG3391         112 IPVG----LGPVGLAVDP-DGKYVYVANAGNGNNT-VSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT  183 (381)
T ss_pred             eeec----cCCceEEECC-CCCEEEEEecccCCce-EEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe
Confidence            4444    2667899998 6666666555   455 88888876 4445554443344 899999999645556668899


Q ss_pred             EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC---CeEEEE
Q 040307          280 ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV---NKLQLL  337 (339)
Q Consensus       280 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d---~~v~~w  337 (339)
                      |.+.|........        ..+.....-......+.++|++.++......   +.+...
T Consensus       184 v~vi~~~~~~v~~--------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i  236 (381)
T COG3391         184 VSVIDTSGNSVVR--------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI  236 (381)
T ss_pred             EEEEeCCCcceec--------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence            9999976655000        0000112233445688999999865544322   355443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.78  E-value=0.29  Score=42.04  Aligned_cols=254  Identities=13%  Similarity=0.107  Sum_probs=111.1

Q ss_pred             Cceeeeeecc---CCeeEEEee-------ecC-CcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEee--cCC---
Q 040307            8 KPGVHTYMAQ---WPISTVAWS-------VRH-DRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIF--DHP---   71 (339)
Q Consensus         8 ~~~~~~~~~~---~~v~~i~~s-------p~~-~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~~~---   71 (339)
                      ++.+.+...+   +.....-|+       ++. ...++|++.+.   ..+.|+|+|...+-........++.  -+.   
T Consensus        52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL---~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g  128 (461)
T PF05694_consen   52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGL---RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTG  128 (461)
T ss_dssp             TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBT---TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-
T ss_pred             ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeee---ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcC
Confidence            3555555432   456666665       111 12667777664   7899999777654444333223321  011   


Q ss_pred             -CCceEEEEcCCCCCCCCCeEEEeC-----C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           72 -YTPTNIAFFPSEETLNPDIVATSG-----D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        72 -~~v~~l~~~~~~~~~~~~~la~~~-----~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                       .....+..-|++     ++++++-     +   .+.+.|-++.+  .....+....  ...--..+-|.| ..+.++|+
T Consensus       129 ~s~PHT~Hclp~G-----~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~--~~~~gYDfw~qp-r~nvMiSS  198 (461)
T PF05694_consen  129 LSRPHTVHCLPDG-----RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRG--PQPFGYDFWYQP-RHNVMISS  198 (461)
T ss_dssp             EEEEEEEEE-SS-------EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-T--T------EEEET-TTTEEEE-
T ss_pred             CCCCceeeecCCc-----cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCC--CCCCCCCeEEcC-CCCEEEEe
Confidence             223445556788     7888762     1   67777766554  4443333210  012345777887 66777775


Q ss_pred             e--------------------CCCeEEEEECCCCeeeeeeeccC--CceeEEEec--C--CcEEEEEeCCCcEEEEEC-C
Q 040307          143 S--------------------VDTTCVIWDIDREILETQLVAHD--REVYDISWG--G--FNVFASVSGDCSVRVFDL-R  195 (339)
Q Consensus       143 ~--------------------~d~~v~i~d~~~~~~~~~~~~~~--~~v~~~~~~--~--~~~l~~~~~d~~i~i~d~-~  195 (339)
                      .                    ...++.+||+.+.+.++++.--.  .....+.|.  |  ..-|+.+...++|..|-- .
T Consensus       199 eWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~  278 (461)
T PF05694_consen  199 EWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD  278 (461)
T ss_dssp             B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E
T ss_pred             ccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC
Confidence            3                    23589999999999998885332  245678887  3  233444445555555543 3


Q ss_pred             CCcc----eeeEEeC-------CCC-------CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC---
Q 040307          196 DKER----STIIYEN-------PVQ-------DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH---  254 (339)
Q Consensus       196 ~~~~----~~~~~~~-------~~~-------~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~---  254 (339)
                      .++-    ...+...       +..       ..-++.|..|. +.++|.+.+--.+.|+.||+..+.+|...-+..   
T Consensus       279 ~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG  357 (461)
T PF05694_consen  279 DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG  357 (461)
T ss_dssp             TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred             CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence            3321    1111000       000       23578899997 777776665544449999999877765443211   


Q ss_pred             ---------------CCCeeEEEeccCCCCeEEEEe
Q 040307          255 ---------------EGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       255 ---------------~~~v~~~~~~p~~~~~l~~~~  275 (339)
                                     .+...-+..|.||.++.+|.|
T Consensus       358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             TTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence                           112356788888854555544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.76  E-value=0.18  Score=39.27  Aligned_cols=100  Identities=6%  Similarity=-0.009  Sum_probs=66.7

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEe--ecCCcc---eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWE--IHDDRT---ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~--~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .-.--+.++|+.+.+    .+..+-+ + +|.-||  ..++..   ..+..++..+..+. ..--.++... ++++.+++
T Consensus       156 ~v~IsNgl~Wd~d~K----~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~-eG~L~Va~  229 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAK----KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDT-EGNLYVAT  229 (310)
T ss_pred             hccCCccccccccCc----EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEcc-CCcEEEEE
Confidence            334457899998874    4445544 4 787787  455431   12222222111111 1122445554 88999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                      -..++|...|..+++.+..+.-....|+|++|-
T Consensus       230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             ecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            999999999999999999988788899999998

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.72  E-value=0.21  Score=45.54  Aligned_cols=191  Identities=12%  Similarity=0.137  Sum_probs=102.9

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C------cEEEEeec
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D------SLRLWEIH  104 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~------~i~iw~~~  104 (339)
                      +.+.++|+...+....-.+|.++.....+...+.+  .....=.+++- -++     .+.|.|| +      ++..||..
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M--~~~R~~~~v~~-l~g-----~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM--NTKRSDFGVAV-LDG-----KLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceeccCCc--cCccccceeEE-ECC-----EEEEEeccccccccccEEEecCC
Confidence            56778888311111122344466665555542233  11111122222 245     6888877 2      79999999


Q ss_pred             CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC------eEEEEECCCCe--eeeeeeccCCceeEEEecC
Q 040307          105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT------TCVIWDIDREI--LETQLVAHDREVYDISWGG  176 (339)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~  176 (339)
                      +.++.....+....     .......   .++.+.++|+.++      ++..||..+++  .+..+..-... ..++.-+
T Consensus       405 ~~~W~~va~m~~~r-----~~~gv~~---~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~  475 (571)
T KOG4441|consen  405 TNKWTPVAPMLTRR-----SGHGVAV---LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLN  475 (571)
T ss_pred             CCcccccCCCCcce-----eeeEEEE---ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEEEEC
Confidence            98876665443321     2222222   2788888888654      56788887765  22222111111 2244446


Q ss_pred             CcEEEEEeCCCc-----EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCC
Q 040307          177 FNVFASVSGDCS-----VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRF  243 (339)
Q Consensus       177 ~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~  243 (339)
                      +.+++.|+.|+.     |..||..+.+-... .........+..+.   .++.+.++|+.++.    .|..||...
T Consensus       476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  476 GKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             CEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCC
Confidence            888899988763     77788888763333 11111112222222   27788888888875    366666544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.72  E-value=0.24  Score=40.12  Aligned_cols=151  Identities=18%  Similarity=0.144  Sum_probs=86.0

Q ss_pred             ceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe-cCCC
Q 040307          168 EVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD-IRFP  244 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d-~~~~  244 (339)
                      .+.+.+++ ++..++... .++.-.+|-.+...........    ..+....|++ ++...++...+.. .+++. ....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----~~l~~PS~d~-~g~~W~v~~~~~~-~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----GSLTRPSWDP-DGWVWTVDDGSGG-VRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----CccccccccC-CCCEEEEEcCCCc-eEEEEecCCC
Confidence            67888999 777666555 2333344444444333333322    4778889998 5777766665555 66663 2221


Q ss_pred             CCceEEEecC--CCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEe
Q 040307          245 TNPVVVLSKH--EGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRW  318 (339)
Q Consensus       245 ~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~  318 (339)
                      ......+...  ...|..+.+||||. .++...   .++.|.+=-+......    .+.....+.... .....+.+++|
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g----~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDG----VPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCC----CcceeccceEecccccCcceeeee
Confidence            2212222222  12899999999995 555444   3577877777655411    011111222222 33567999999


Q ss_pred             cCCCCceEEEe
Q 040307          319 SPLELDWIAIA  329 (339)
Q Consensus       319 ~p~~~~l~~~~  329 (339)
                      .+++..++.+.
T Consensus       174 ~~~~~L~V~~~  184 (253)
T PF10647_consen  174 SDDSTLVVLGR  184 (253)
T ss_pred             cCCCEEEEEeC
Confidence            99998655544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.66  E-value=0.46  Score=42.69  Aligned_cols=141  Identities=11%  Similarity=-0.018  Sum_probs=77.3

Q ss_pred             CCCEEEEEeCCC------------------eEEEEECCCCeeeeeeeccCCce-----------eEEE-ec--CCcEEEE
Q 040307          135 DTRRVATCSVDT------------------TCVIWDIDREILETQLVAHDREV-----------YDIS-WG--GFNVFAS  182 (339)
Q Consensus       135 ~~~~l~~~~~d~------------------~v~i~d~~~~~~~~~~~~~~~~v-----------~~~~-~~--~~~~l~~  182 (339)
                      .+..++.++.++                  .|.-+|.++++.+..++.-....           ..+. ..  +...++.
T Consensus       227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~  306 (488)
T cd00216         227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH  306 (488)
T ss_pred             CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence            456677776554                  79999999999887764211111           1111 11  1236778


Q ss_pred             EeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE------------------eeCCCeEEEEecCCC
Q 040307          183 VSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV------------------GMDSNKVVVLDIRFP  244 (339)
Q Consensus       183 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~------------------~~d~~~i~i~d~~~~  244 (339)
                      ++.+|.+...|.++++..=.....      ...++.+|   ..++.+                  ..++. +.-.|+.+ 
T Consensus       307 g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~t-  375 (488)
T cd00216         307 APKNGFFYVLDRTTGKLISARPEV------EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKT-  375 (488)
T ss_pred             ECCCceEEEEECCCCcEeeEeEee------ccccccCC---ceEEEccccccccCcccccCCCCCCCceE-EEEEeCCC-
Confidence            888999999999998743221110      01122222   222221                  12344 66666665 


Q ss_pred             CCceEEEecCC--------CCee--EEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          245 TNPVVVLSKHE--------GSVN--GISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       245 ~~~~~~~~~~~--------~~v~--~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++.+-+.....        .+..  .+.  -.+ .+|+.++.||.|+.+|..+++
T Consensus       376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g-~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         376 GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG-NLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             CcEeeEeeCCccccccccCCcccCcceE--ecC-CeEEEECCCCeEEEEECCCCc
Confidence            33333332210        1111  111  234 478888899999999999988

The alignment model contains an 8-bladed beta-propeller.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.012  Score=55.04  Aligned_cols=104  Identities=16%  Similarity=0.242  Sum_probs=77.0

Q ss_pred             CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC
Q 040307          177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG  256 (339)
Q Consensus       177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~  256 (339)
                      +..++.|+..|.+-..|.+..-.+  ........++|++++|+. +|..++.|-.+|- |.+||+.. +++++.+..|..
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~-V~v~D~~~-~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGH-VTVWDMHR-AKILKVITEHGA  173 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecC-CCceeccccCCCc-EEEEEccC-CcceeeeeecCC
Confidence            667888998999999998875322  222233568999999995 9999999999998 99999987 677888877776


Q ss_pred             CeeEE---EeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          257 SVNGI---SWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       257 ~v~~~---~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      +..++   .+..++ ..++++...|.  +|++.-.
T Consensus       174 p~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv~n  205 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLVFN  205 (1206)
T ss_pred             ccceEEEEEEeCCC-cEEEEccCCCc--eEEEEec
Confidence            65554   444555 36778877776  6665443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.61  E-value=0.65  Score=43.83  Aligned_cols=277  Identities=10%  Similarity=0.059  Sum_probs=154.4

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC---------------
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD---------------   96 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~---------------   96 (339)
                      +..|+++.     .+.+.+..++.-......  +  ..-...+..+++.+..     ..+++.++               
T Consensus       684 ~d~l~~~~-----~~~l~i~tid~iqkl~ir--t--vpl~~~prrI~~q~~s-----l~~~v~s~r~e~~~~~~~ee~~~  749 (1096)
T KOG1897|consen  684 PDSLASAN-----GGALTIGTIDEIQKLHIR--T--VPLGESPRRICYQESS-----LTFGVLSNRIESSAEYYGEEYEV  749 (1096)
T ss_pred             CceEEEec-----CCceEEEEecchhhccee--e--ecCCCChhheEecccc-----eEEEEEecccccchhhcCCcceE
Confidence            45666666     678888666654433332  1  3334456677777644     44444331               


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccC--CCCEEEEEEcCCCCCEEEEEeC----------CCeEEEEECCCCeeeeeee
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEF--SSAITSFDWAGFDTRRVATCSV----------DTTCVIWDIDREILETQLV  163 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~----------d~~v~i~d~~~~~~~~~~~  163 (339)
                       .++++|-++-+     .+..|+....  ...|.+..|....+.+++.|..          .|.|.++.......+....
T Consensus       750 s~l~vlD~nTf~-----vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~  824 (1096)
T KOG1897|consen  750 SFLRVLDQNTFE-----VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA  824 (1096)
T ss_pred             EEEEEecCCcee-----EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence             34555554443     2222321111  1345555687522667777753          5788888877644343332


Q ss_pred             cc--CCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          164 AH--DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       164 ~~--~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                      .+  .+.+.++.--++.++|.-  ...|++|+....+.... ..  .+..++..+...- .++.+++|..-+. +.+.-.
T Consensus       825 e~~v~Gav~aL~~fngkllA~I--n~~vrLye~t~~~eLr~-e~--~~~~~~~aL~l~v-~gdeI~VgDlm~S-itll~y  897 (1096)
T KOG1897|consen  825 ETVVKGAVYALVEFNGKLLAGI--NQSVRLYEWTTERELRI-EC--NISNPIIALDLQV-KGDEIAVGDLMRS-ITLLQY  897 (1096)
T ss_pred             eeeeccceeehhhhCCeEEEec--CcEEEEEEccccceehh-hh--cccCCeEEEEEEe-cCcEEEEeeccce-EEEEEE
Confidence            22  344444443357766644  56899999988753332 22  2456777887774 8899999988887 776665


Q ss_pred             CCCCCceEEE--ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc------cceeeeccccee
Q 040307          242 RFPTNPVVVL--SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV------EPELCYQSMAEI  313 (339)
Q Consensus       242 ~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i  313 (339)
                      +.....+..+  ..+..+.+++.+-.+.  .++.+..+|.+.+-..+.......+.......      +....+.|..-|
T Consensus       898 ~~~eg~f~evArD~~p~Wmtaveil~~d--~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv  975 (1096)
T KOG1897|consen  898 KGDEGNFEEVARDYNPNWMTAVEILDDD--TYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLV  975 (1096)
T ss_pred             eccCCceEEeehhhCccceeeEEEecCc--eEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceE
Confidence            5433223322  2356678888887664  56677778888888776544211111111111      112233444444


Q ss_pred             EE--EEecCCCCceEEEecCCeEEE
Q 040307          314 NV--VRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       314 ~~--~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      .+  -.-+|.++.++.+.-+|.|-+
T Consensus       976 ~~~~~s~~~~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen  976 MQLGDSMIPLEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred             eeccccccCCCCcEEEEEccceEEE
Confidence            44  234455666777777777644

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.01  Score=55.56  Aligned_cols=66  Identities=12%  Similarity=0.143  Sum_probs=51.2

Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+..++.|+..|. +-..|++..-.+...-..-.++|++++|+.+| ++++.|-.+|.|.+||+...+
T Consensus        98 ~~~~ivi~Ts~gh-vl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k  163 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGH-VLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK  163 (1206)
T ss_pred             eeeeEEEEcCchh-hhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc
Confidence            4556777777776 99998876333333333345799999999999 699999999999999999977

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.59  E-value=0.46  Score=42.24  Aligned_cols=128  Identities=9%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                      .+.-..|..+.|.|-+...-|.+||.-.. .|.||.+....   .+.+..-..+-.+.+.---.++.|+| ....|+.-.
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT  131 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLT  131 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEe
Confidence            34445689999999876666789999887 99999986322   11111111111111111223678999 666665544


Q ss_pred             CCCeEEEEECCCC--eeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCC
Q 040307          144 VDTTCVIWDIDRE--ILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDK  197 (339)
Q Consensus       144 ~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~  197 (339)
                      ....-.+++++..  +...-++ ..+.|.|.+|. ||+.|+.+- ..=.-++||-...
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            4333334555432  3333443 46789999999 877766553 3445678886554

>PRK13684 Ycf48-like protein; Provisional

Probab=96.56  E-value=0.39  Score=40.68  Aligned_cols=278  Identities=10%  Similarity=-0.025  Sum_probs=133.6

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .....++++|.|...   ..-+|+|.     ++.|..  -...+........-.......+.++.|.++      ..+++
T Consensus        42 ~~~~~~l~~v~F~d~---~~g~avG~-----~G~il~--T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~------~~~~~  105 (334)
T PRK13684         42 LPTEANLLDIAFTDP---NHGWLVGS-----NRTLLE--TNDGGETWEERSLDLPEENFRLISISFKGD------EGWIV  105 (334)
T ss_pred             cCCCCceEEEEEeCC---CcEEEEEC-----CCEEEE--EcCCCCCceECccCCcccccceeeeEEcCC------cEEEe
Confidence            344668999999866   67788887     566544  444444444311100012234778888643      34555


Q ss_pred             eCCcEEEEeecCC-c-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCcee
Q 040307           94 SGDSLRLWEIHDD-R-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVY  170 (339)
Q Consensus        94 ~~~~i~iw~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~  170 (339)
                      +.... ||...++ + ++.........  .  .........  .+..+ .++..|.|.. ..+.++.-..+. .-...+.
T Consensus       106 G~~g~-i~~S~DgG~tW~~~~~~~~~~--~--~~~~i~~~~--~~~~~-~~g~~G~i~~-S~DgG~tW~~~~~~~~g~~~  176 (334)
T PRK13684        106 GQPSL-LLHTTDGGKNWTRIPLSEKLP--G--SPYLITALG--PGTAE-MATNVGAIYR-TTDGGKNWEALVEDAAGVVR  176 (334)
T ss_pred             CCCce-EEEECCCCCCCeEccCCcCCC--C--CceEEEEEC--CCcce-eeeccceEEE-ECCCCCCceeCcCCCcceEE
Confidence            44322 3333332 2 22221110010  0  122222232  22233 3445555543 222344333322 2245678


Q ss_pred             EEEecCCcEEEEEeCCCcEEEE-ECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          171 DISWGGFNVFASVSGDCSVRVF-DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       171 ~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      ++.+.++..++..+..|.+..- |- .++.-......  ....+..+.+.| ++..++++ ..+. + +......+....
T Consensus       177 ~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~--~~~~l~~i~~~~-~g~~~~vg-~~G~-~-~~~s~d~G~sW~  249 (334)
T PRK13684        177 NLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRN--SSRRLQSMGFQP-DGNLWMLA-RGGQ-I-RFNDPDDLESWS  249 (334)
T ss_pred             EEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCC--CcccceeeeEcC-CCCEEEEe-cCCE-E-EEccCCCCCccc
Confidence            8888854555555566655432 21 11212222222  346788999987 67766654 4453 3 332112122222


Q ss_pred             EEec----CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-ecccceeEEEEecCCCCc
Q 040307          250 VLSK----HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQSMAEINVVRWSPLELD  324 (339)
Q Consensus       250 ~~~~----~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~  324 (339)
                      ....    ....+.++.+.|++ .++ .++.+|.+. .....++          ....... ..-....+.+.|..++. 
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~-~S~d~G~----------tW~~~~~~~~~~~~~~~~~~~~~~~-  315 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPG-EIW-AGGGNGTLL-VSKDGGK----------TWEKDPVGEEVPSNFYKIVFLDPEK-  315 (334)
T ss_pred             cccCCccccccceeeEEEcCCC-CEE-EEcCCCeEE-EeCCCCC----------CCeECCcCCCCCcceEEEEEeCCCc-
Confidence            1111    12357889999987 344 455566554 3333333          1111111 11234577888877665 


Q ss_pred             eEEEecCCeEEEE
Q 040307          325 WIAIAFVNKLQLL  337 (339)
Q Consensus       325 l~~~~~d~~v~~w  337 (339)
                      .++++..|.|.-|
T Consensus       316 ~~~~G~~G~il~~  328 (334)
T PRK13684        316 GFVLGQRGVLLRY  328 (334)
T ss_pred             eEEECCCceEEEe
Confidence            6777888877655

>PRK10115 protease 2; Provisional

Probab=96.48  E-value=0.77  Score=43.13  Aligned_cols=246  Identities=9%  Similarity=0.060  Sum_probs=116.2

Q ss_pred             CeeEEEeeecCCcccEEEEeee-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307           19 PISTVAWSVRHDRKSRLAVGSF-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--   95 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--   95 (339)
                      .+..+.|||+   +++||.+.- .+++...|++.+  ..++....  .. ...  .-..++|.++++    .++.+..  
T Consensus       128 ~l~~~~~Spd---g~~la~~~d~~G~E~~~l~v~d--~~tg~~l~--~~-i~~--~~~~~~w~~D~~----~~~y~~~~~  193 (686)
T PRK10115        128 TLGGMAITPD---NTIMALAEDFLSRRQYGIRFRN--LETGNWYP--EL-LDN--VEPSFVWANDSW----TFYYVRKHP  193 (686)
T ss_pred             EEeEEEECCC---CCEEEEEecCCCcEEEEEEEEE--CCCCCCCC--cc-ccC--cceEEEEeeCCC----EEEEEEecC
Confidence            4667889999   999998763 222333466644  44444222  11 111  125699999983    3544432  


Q ss_pred             ---C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECC--CCeeeeeeecc
Q 040307           96 ---D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDID--REILETQLVAH  165 (339)
Q Consensus        96 ---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~--~~~~~~~~~~~  165 (339)
                         .  .|..+++.++.......+....     ....-..+.+.++++++..+.   ++.+.+++..  .++....+...
T Consensus       194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~-----~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  268 (686)
T PRK10115        194 VTLLPYQVWRHTIGTPASQDELVYEEKD-----DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR  268 (686)
T ss_pred             CCCCCCEEEEEECCCChhHCeEEEeeCC-----CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC
Confidence               1  6777888777322333343322     222222233336666555443   4578888843  33322222211


Q ss_pred             CCceeEEEec-CCcEEEEEeCC-Cc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEe
Q 040307          166 DREVYDISWG-GFNVFASVSGD-CS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-KVVVLD  240 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d  240 (339)
                      ......+. + .+.+++....+ ..  |...++........+... .....+..+.+.  .+.++++...++. .+.+++
T Consensus       269 ~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        269 KDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence            22222222 3 23333333222 23  433444422222233322 123467778886  3455555555554 345555


Q ss_pred             cCCCCCceEEEe-cCCCCeeEEEec--cCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307          241 IRFPTNPVVVLS-KHEGSVNGISWA--PLYGRRLCSVAD---DSRALIWEVVGPG  289 (339)
Q Consensus       241 ~~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~~l~~~~~---dg~v~iwd~~~~~  289 (339)
                      ..  ...+..+. .....+..+.++  ++++.++++.+.   -+.+..+|+.+.+
T Consensus       345 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        345 RK--TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CC--CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            43  22334433 222233333444  444345554442   3567777776543

>PHA03098 kelch-like protein; Provisional

Probab=96.46  E-value=0.62  Score=42.47  Aligned_cols=142  Identities=8%  Similarity=0.019  Sum_probs=73.0

Q ss_pred             CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCC
Q 040307           89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDR  155 (339)
Q Consensus        89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~  155 (339)
                      .+++.||.       .+..||..++++.....+....     ... +++..  +++.++.|+.+      ..+..||+.+
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-----~~~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-----YNP-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-----ccc-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence            67777761       5788888887755443333211     111 22222  56777777742      4588899876


Q ss_pred             Ceee--eeeeccCCceeEEEecCCcEEEEEeCCC--------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          156 EILE--TQLVAHDREVYDISWGGFNVFASVSGDC--------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       156 ~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      .+-.  ..+..... -.++...++.+++.|+.+.        .+.+||..+.+-... ...+........+.+   ++.+
T Consensus       416 ~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~---~~~i  490 (534)
T PHA03098        416 NKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCIF---NNKI  490 (534)
T ss_pred             CeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceEEEE---CCEE
Confidence            5411  11111111 1123333577777776532        388899887652221 111111111122222   5677


Q ss_pred             EEEEeeCC----CeEEEEecCC
Q 040307          226 MATVGMDS----NKVVVLDIRF  243 (339)
Q Consensus       226 l~~~~~d~----~~i~i~d~~~  243 (339)
                      ++.|+.++    ..+.+||...
T Consensus       491 yv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        491 YVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             EEEcCCcCCcccceeEEEeCCC
Confidence            77777652    1378888765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.63  Score=42.62  Aligned_cols=177  Identities=11%  Similarity=0.136  Sum_probs=88.4

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee--e--eccCCceeEE
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ--L--VAHDREVYDI  172 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~--~~~~~~v~~~  172 (339)
                      .|+||+....   .+..+.-..     ..+-.+.|+  +...|++-..+|++++|++- |+.+..  .  ......|..+
T Consensus        65 ~I~If~~sG~---lL~~~~w~~-----~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec  133 (829)
T KOG2280|consen   65 YIRIFNISGQ---LLGRILWKH-----GELIGMGWS--DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVEC  133 (829)
T ss_pred             eEEEEecccc---chHHHHhcC-----CCeeeeccc--CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEE
Confidence            7888887654   333222222     478899998  55677777899999999984 322222  1  1122234444


Q ss_pred             Eec-CCcEEEEEeCCCcEEEE-ECCCCcceeeEEeCCCCCCCeEEEEEecCC--CCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          173 SWG-GFNVFASVSGDCSVRVF-DLRDKERSTIIYENPVQDCPLLRLEWNKAD--PRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      .+. +|-.+++  .+|.+.+- +..... .......|....+..+-...++.  ...++-....-. ..++.........
T Consensus       134 ~~f~~GVavlt--~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  134 RFFHNGVAVLT--VSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL  209 (829)
T ss_pred             EEecCceEEEe--cCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence            443 4433333  34444433 333222 11111111111111121111111  112221111111 2233222222222


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..+......+..+..||+. ++|+--..+|.+.+-+.+..+
T Consensus       210 ~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             cccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecchhh
Confidence            2333334578899999998 699999999999998887766

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.42  E-value=0.14  Score=46.62  Aligned_cols=109  Identities=13%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEec--cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWA--PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      +.++....++..+.|||.+... ...+-. ...+.|..+.|.  |++ +.+++.+..+.|.+|--.... ....+.....
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~d-y~~~~p~w~~  117 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYD-YTNKGPSWAP  117 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchh-hhcCCcccce
Confidence            3455556666679999998633 221111 346789999886  567 577777788888888543211 0000000011


Q ss_pred             ccceeeeccc-ceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          301 VEPELCYQSM-AEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       301 ~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      +..+.+..+. .+|.+..|.++|. ++ ++.++.+.|+
T Consensus       118 i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~sGNqlfv~  153 (631)
T PF12234_consen  118 IRKIDISSHTPHPIGDSIWLKDGT-LV-VGSGNQLFVF  153 (631)
T ss_pred             eEEEEeecCCCCCccceeEecCCe-EE-EEeCCEEEEE
Confidence            1122233443 6799999999995 33 3334455554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.38  E-value=0.7  Score=41.54  Aligned_cols=155  Identities=12%  Similarity=0.053  Sum_probs=80.0

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEE-EEEEcCCCCCEEEEEe---------CCCeEEEEECCCCe
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAIT-SFDWAGFDTRRVATCS---------VDTTCVIWDIDREI  157 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~---------~d~~v~i~d~~~~~  157 (339)
                      .+++...+ .|+-+|.++++  .+-.+...........+. ...+.  + ..++.++         .++.+..+|..+++
T Consensus       112 ~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         112 KVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             eEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCc
Confidence            55555555 88999999887  443333221000000011 11121  2 3444443         36889999999998


Q ss_pred             eeeeeeccCCc--------------------e-eEEEec-CCcEEEEEeCCC------------------cEEEEECCCC
Q 040307          158 LETQLVAHDRE--------------------V-YDISWG-GFNVFASVSGDC------------------SVRVFDLRDK  197 (339)
Q Consensus       158 ~~~~~~~~~~~--------------------v-~~~~~~-~~~~l~~~~~d~------------------~i~i~d~~~~  197 (339)
                      .+..+......                    + ....+. .+..++.++.++                  .|.-+|..++
T Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG  266 (488)
T cd00216         187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG  266 (488)
T ss_pred             eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence            77766432110                    1 122333 256677776554                  6888898888


Q ss_pred             cceeeEEeCCCCCC----CeEEEEEe---cCCCC---eEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          198 ERSTIIYENPVQDC----PLLRLEWN---KADPR---FMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       198 ~~~~~~~~~~~~~~----~v~~~~~~---p~~~~---~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      +..=..... .+..    ......+.   ..++.   .+++++.++. +..+|.++ ++++-..
T Consensus       267 ~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~-l~ald~~t-G~~~W~~  327 (488)
T cd00216         267 KVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGF-FYVLDRTT-GKLISAR  327 (488)
T ss_pred             CEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCce-EEEEECCC-CcEeeEe
Confidence            733222111 1110    00001111   11232   5777888888 99999988 5555443

The alignment model contains an 8-bladed beta-propeller.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.32  E-value=0.61  Score=40.20  Aligned_cols=195  Identities=13%  Similarity=0.071  Sum_probs=84.6

Q ss_pred             CeEEEeC-C--cEEEEeecCCc--ceeEEEeec---CCCccCCCCEEEEEEcCCCCCEEEEEe------CCCeEEEEECC
Q 040307           89 DIVATSG-D--SLRLWEIHDDR--TELKSLLNS---NKTSEFSSAITSFDWAGFDTRRVATCS------VDTTCVIWDID  154 (339)
Q Consensus        89 ~~la~~~-~--~i~iw~~~~~~--~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~------~d~~v~i~d~~  154 (339)
                      ++|+..+ .  .|+|.|+.+..  .+..++++.   +...+...+=+ +---| +++.++++-      .-|.+.+.|-+
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT-~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHT-VHCLP-DGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEE-EEE-S-S--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCce-eeecC-CccEEEEeccCCCCCCCCcEEEEcCc
Confidence            5666665 3  99999998542  334455543   11011111111 11224 787777752      23567788887


Q ss_pred             CCeeeeeeeccC---CceeEEEec-CCcEEEEEeC--------------------CCcEEEEECCCCcceeeEEeCCCCC
Q 040307          155 REILETQLVAHD---REVYDISWG-GFNVFASVSG--------------------DCSVRVFDLRDKERSTIIYENPVQD  210 (339)
Q Consensus       155 ~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~~  210 (339)
                      +.+.........   .--.++-|. ..+.++|...                    ..++.+||+.+.+..+.+-.... .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~-g  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE-G  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT-E
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC-C
Confidence            776665553221   123455555 3566666542                    46899999999986666554421 1


Q ss_pred             CCeEEEEE--ecCCCCeEEEEe-eCCCeEEEEecCCCCC----ceEEEec-----------------CCCCeeEEEeccC
Q 040307          211 CPLLRLEW--NKADPRFMATVG-MDSNKVVVLDIRFPTN----PVVVLSK-----------------HEGSVNGISWAPL  266 (339)
Q Consensus       211 ~~v~~~~~--~p~~~~~l~~~~-~d~~~i~i~d~~~~~~----~~~~~~~-----------------~~~~v~~~~~~p~  266 (339)
                      .....+.|  .| +..+=++++ ...+ |..|--...+.    .+..+..                 -..-|+.|..|.|
T Consensus       245 ~~pLEvRflH~P-~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  245 QMPLEVRFLHDP-DANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             EEEEEEEE-SST-T--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CceEEEEecCCC-CccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence            23445555  44 333333333 3333 54443311121    1111111                 0234789999999


Q ss_pred             CCCeEE-EEeCCCcEEEEEecCCC
Q 040307          267 YGRRLC-SVADDSRALIWEVVGPG  289 (339)
Q Consensus       267 ~~~~l~-~~~~dg~v~iwd~~~~~  289 (339)
                      .. +|. ++-.+|.|+.||+....
T Consensus       323 Dr-fLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  323 DR-FLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             S--EEEEEETTTTEEEEEE-SSTT
T ss_pred             CC-EEEEEcccCCcEEEEecCCCC
Confidence            85 555 45589999999999977

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.31  E-value=0.28  Score=45.84  Aligned_cols=77  Identities=18%  Similarity=0.324  Sum_probs=54.6

Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-C--------Cc--e-EEE--------ecCCCCeeEEEeccCC--
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP-T--------NP--V-VVL--------SKHEGSVNGISWAPLY--  267 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~-~--------~~--~-~~~--------~~~~~~v~~~~~~p~~--  267 (339)
                      ...|..+..+| +|.+++..|..+  |.|..+... +        +.  . .++        ..+...|..+.|+|.+  
T Consensus        84 ~f~v~~i~~n~-~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNP-TGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECC-CCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            35788999998 999999888876  666655321 0        11  1 111        1234578999999984  


Q ss_pred             CCeEEEEeCCCcEEEEEecCCC
Q 040307          268 GRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       268 ~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +..|+.-..|+++++||+....
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCC
Confidence            3588888899999999998655

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=96.20  E-value=0.61  Score=42.51  Aligned_cols=185  Identities=10%  Similarity=0.007  Sum_probs=90.0

Q ss_pred             CeEEEeC-C-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCC
Q 040307           89 DIVATSG-D-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDR  155 (339)
Q Consensus        89 ~~la~~~-~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~  155 (339)
                      .+++.|| +       .+..||..+.++.....+....     ... +++..  ++.+++.||.+     ..+..||..+
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR-----KNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc-----ccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCC
Confidence            5677665 1       4677888777654333322111     112 22222  67788888865     3577788876


Q ss_pred             Ceee--eeeeccCCceeEEEecCCcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          156 EILE--TQLVAHDREVYDISWGGFNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       156 ~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      .+-.  ..+. +...-.+++..++.+++.||.+      ..+..||+.+.+-... ...+..... .+++..  ++.+++
T Consensus       368 ~~W~~~~~lp-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~-~~~~~~--~~~iyv  442 (534)
T PHA03098        368 SKWREEPPLI-FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLPISHYG-GCAIYH--DGKIYV  442 (534)
T ss_pred             CceeeCCCcC-cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCCccccC-ceEEEE--CCEEEE
Confidence            5411  1111 1111122233367777877742      3578899887652211 111111111 223332  566777


Q ss_pred             EEeeCCC-------eEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          228 TVGMDSN-------KVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       228 ~~~~d~~-------~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                      .|+.+..       .+.+||..+.. ..+..+.........+.+  ++ ++++.|+.+     +.+.+||.....
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence            7765321       27888876522 111111111111112222  44 577777654     467777776644

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.12  E-value=0.14  Score=48.70  Aligned_cols=145  Identities=17%  Similarity=0.113  Sum_probs=90.3

Q ss_pred             EEEecCCcE--EEEEeCCCcEEEEECCCCcceeeE----E----eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          171 DISWGGFNV--FASVSGDCSVRVFDLRDKERSTII----Y----ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       171 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~----~----~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      -+++++...  ++..+.+-.|..||+++-......    +    ..........++.|+|.-....++...|.. |++..
T Consensus       106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l~V~~  184 (1405)
T KOG3630|consen  106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-LRVKS  184 (1405)
T ss_pred             EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-hhhhh
Confidence            334445333  333344557899999865422100    0    111123456788999866666777788887 88887


Q ss_pred             cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC
Q 040307          241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP  320 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p  320 (339)
                      +.........+. -...+++++|+|.| +.++.|...|++.-|......++..         +..-......|.+|+|-.
T Consensus       185 ~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~i---------p~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  185 TKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEI---------PEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeecccceeecc---------cCCCcCCCcceeEEEEec
Confidence            765443344433 24578999999999 7999999999998887665531000         111111256899999988


Q ss_pred             CCCceEE
Q 040307          321 LELDWIA  327 (339)
Q Consensus       321 ~~~~l~~  327 (339)
                      ...+++.
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8766553

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.09  E-value=0.022  Score=31.19  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=26.1

Q ss_pred             CCeEEEEEecCCC--CeEEEEeeCCCeEEEEecCC
Q 040307          211 CPLLRLEWNKADP--RFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       211 ~~v~~~~~~p~~~--~~l~~~~~d~~~i~i~d~~~  243 (339)
                      +.+.++.|+|..+  .+|+.+-..+. +.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            3688999998666  68888777777 99999995

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.06  E-value=1  Score=40.24  Aligned_cols=125  Identities=18%  Similarity=0.348  Sum_probs=77.6

Q ss_pred             eeeeeeccCCeeEEEeeecCC--cccEEEEeeeccccCCeEEEEecCCCC---CcccceeeEeecCCC--CceEEEEcCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHD--RKSRLAVGSFLEDYSNKIELVNFNPET---SDFSADNRLIFDHPY--TPTNIAFFPS   82 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~--~~~~la~g~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~~--~v~~l~~~~~   82 (339)
                      .+-.|+|   |..+.|.|-..  ...+||+-.     ...|.||.+....   .+.......+....-  -.....|+|.
T Consensus        52 viGqFEh---V~GlsW~P~~~~~~paLLAVQH-----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk  123 (671)
T PF15390_consen   52 VIGQFEH---VHGLSWAPPCTADTPALLAVQH-----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK  123 (671)
T ss_pred             Eeeccce---eeeeeecCcccCCCCceEEEec-----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC
Confidence            3444444   88899998632  235777766     8999999987433   233322222222222  2356789999


Q ss_pred             CCCCCCCeEEEeC--CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECC
Q 040307           83 EETLNPDIVATSG--DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDID  154 (339)
Q Consensus        83 ~~~~~~~~la~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~  154 (339)
                      .     .+|+.-.  |.-.++++..+..+....++..      +-|.|.+|.+ ||+.|+.+- ..=.-++||-.
T Consensus       124 ~-----~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~------G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  124 K-----AILTVLTARDVSVLPSVHCDSSRVKADIKTS------GLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             C-----ceEEEEecCceeEeeeeeeCCceEEEeccCC------ceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence            9     7887755  3435566665554455555543      7899999997 887766653 33355688853

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.99  E-value=0.71  Score=42.19  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=69.9

Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCceeEEEec---CCcEEEEEeCCCcEEEEECC-----
Q 040307          125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVYDISWG---GFNVFASVSGDCSVRVFDLR-----  195 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~-----  195 (339)
                      .+.-+.-++ -++.-++-+....+.|||.+.+.....-. ...+.|.++.|.   +++.+++.|..+.|.+|--.     
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344444443 44444444445679999998887443322 346789999998   58888888899999998542     


Q ss_pred             CCc----ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          196 DKE----RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       196 ~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      ...    ....+.-......+|.+..|.+ +|.+++.++ +  ++.|+|-..
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG-N--qlfv~dk~~  157 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG-N--QLFVFDKWL  157 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC-C--EEEEECCCc
Confidence            111    1111111112235788999986 666655433 2  288987543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.67  Score=37.53  Aligned_cols=280  Identities=11%  Similarity=0.070  Sum_probs=149.1

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      +......+-+..+.++.+     +...+.    .+.-++|+|+.........  .. ....+--.++..+-       ++
T Consensus        80 ~~~i~~~~l~~Dv~vse~-----yvyvad----~ssGL~IvDIS~P~sP~~~--~~-lnt~gyaygv~vsG-------n~  140 (370)
T COG5276          80 LSVINARDLFADVRVSEE-----YVYVAD----WSSGLRIVDISTPDSPTLI--GF-LNTDGYAYGVYVSG-------NY  140 (370)
T ss_pred             EEEEehhhhhheeEeccc-----EEEEEc----CCCceEEEeccCCCCccee--cc-ccCCceEEEEEecC-------CE
Confidence            334445667778888766     666666    5788999777644332221  11 22234445555544       33


Q ss_pred             EEEeC-C-cEEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeec
Q 040307           91 VATSG-D-SLRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVA  164 (339)
Q Consensus        91 la~~~-~-~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~  164 (339)
                      .-.+. + -+.+.|+.+.+. ..........     .....++.|   |++-..+..|+-+.+-|+....   .+... .
T Consensus       141 aYVadlddgfLivdvsdpssP~lagrya~~~-----~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n  211 (370)
T COG5276         141 AYVADLDDGFLIVDVSDPSSPQLAGRYALPG-----GDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-N  211 (370)
T ss_pred             EEEeeccCcEEEEECCCCCCceeeeeeccCC-----CCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-e
Confidence            33333 4 788888877652 2233333332     334456664   5666777789999999986654   22222 2


Q ss_pred             cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ....+.++..++..-+++. .+.-+.+-|....+.+..+..-  ....+.++.--|-.+++......+.. +.+-|..++
T Consensus       212 ~g~g~~sv~vsdnr~y~vv-y~egvlivd~s~~ssp~~~gsy--et~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp  287 (370)
T COG5276         212 TGPGTYSVSVSDNRAYLVV-YDEGVLIVDVSGPSSPTVFGSY--ETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNP  287 (370)
T ss_pred             cCCceEEEEecCCeeEEEE-cccceEEEecCCCCCceEeecc--ccCCcccccceecccceeeeeccccC-ceeEeccCC
Confidence            2336788888854444444 3445778888887755554332  22233333211236677777777777 888888876


Q ss_pred             CCceEE--EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307          245 TNPVVV--LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       245 ~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~  322 (339)
                      ..|...  +......-..+..+-   .++..+..+ ...+-+....+.            +-...+-...+.+.+.+-+.
T Consensus       288 ~spfl~ss~~t~g~~a~gi~ay~---~y~yiadkn-~g~vV~~s~~s~------------m~~~~g~~ti~~s~~v~~~~  351 (370)
T COG5276         288 PSPFLSSSLDTAGYQAAGIRAYG---NYNYIADKN-TGAVVDASPPSM------------MDKRPGRPTIGQSCDVSVDT  351 (370)
T ss_pred             CCCchhccccCCCccccceEEec---CeeEeccCC-ceEEEeCCChhh------------cccccCcceEeeecceEEEe
Confidence            554321  111111333444332   244444444 455556555441            00111111122233333344


Q ss_pred             CceEEEecCCeEEEEe
Q 040307          323 LDWIAIAFVNKLQLLK  338 (339)
Q Consensus       323 ~~l~~~~~d~~v~~w~  338 (339)
                      +.+...-.++.+.+|+
T Consensus       352 q~~y~~d~~~gl~i~~  367 (370)
T COG5276         352 QIIYSTDYNGGLSIIE  367 (370)
T ss_pred             eEEEEeecCCCEEEEE
Confidence            4455677788888886

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.97  E-value=0.67  Score=37.38  Aligned_cols=249  Identities=12%  Similarity=0.112  Sum_probs=129.5

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeE-EEEecCCCCCccccee---eEeecCCCCceEEEEcC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKI-ELVNFNPETSDFSADN---RLIFDHPYTPTNIAFFP   81 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i-~i~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~   81 (339)
                      +.+|.+.....+..-..|+|+|.  ....++.+-    ..|+. .++|.+..........   ..-++|.      .|||
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~--~~ravafAR----rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~  123 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPA--LPRAVAFAR----RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSP  123 (366)
T ss_pred             cCCceeeeeecccccCCeecCCC--CcceEEEEe----cCCceEEEECCCCCcCcEEEecccCceeeccc------ccCC
Confidence            45677777778888889999998  355677776    45554 5644443322221100   0013443      6999


Q ss_pred             CCCCCCCCeEEEe-CC------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----------
Q 040307           82 SEETLNPDIVATS-GD------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV----------  144 (339)
Q Consensus        82 ~~~~~~~~~la~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------  144 (339)
                      |+     .+|... .|      .|-|||.... +..+..+..|.     -.-..+.|.+ |++.++.+.-          
T Consensus       124 dG-----~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~G-----iGpHev~lm~-DGrtlvvanGGIethpdfgR  191 (366)
T COG3490         124 DG-----RLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHG-----IGPHEVTLMA-DGRTLVVANGGIETHPDFGR  191 (366)
T ss_pred             CC-----cEEEeecCCCCCCCceEEEEecccc-cceecccccCC-----cCcceeEEec-CCcEEEEeCCceecccccCc
Confidence            99     666554 22      7999999843 44566666665     4455788887 9998887642          


Q ss_pred             --------CCeEEEEECCCCeeeee--ee--ccCCceeEEEec-CCcEEEEEeCCCc-----EEEEECCCCcceeeEEeC
Q 040307          145 --------DTTCVIWDIDREILETQ--LV--AHDREVYDISWG-GFNVFASVSGDCS-----VRVFDLRDKERSTIIYEN  206 (339)
Q Consensus       145 --------d~~v~i~d~~~~~~~~~--~~--~~~~~v~~~~~~-~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~  206 (339)
                              .-++-+.|..+++.+.+  +.  .+.-.|..++.. ++..++-+-..|.     -.+=-.+.++. ......
T Consensus       192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~-l~~~~~  270 (366)
T COG3490         192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP-LEFLDL  270 (366)
T ss_pred             cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc-CcccCC
Confidence                    11222333333432222  11  223345556555 3333333222111     00001111111 111111


Q ss_pred             CC-----CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEE
Q 040307          207 PV-----QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRAL  281 (339)
Q Consensus       207 ~~-----~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~  281 (339)
                      +.     -...|-+++.+- +..+++..+-.|+...+||..+ +..+....  -.....++-...   =++..+.+|.+.
T Consensus       271 pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~t-G~vv~~a~--l~daaGva~~~~---gf~vssg~G~~~  343 (366)
T COG3490         271 PEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAAT-GAVVSEAA--LPDAAGVAAAKG---GFAVSSGQGRII  343 (366)
T ss_pred             CHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCC-CcEEeccc--ccccccceeccC---ceEEecCCceEE
Confidence            00     113566788875 5556666666666689999987 43332211  112333443333   366666788888


Q ss_pred             EEEec
Q 040307          282 IWEVV  286 (339)
Q Consensus       282 iwd~~  286 (339)
                      ++.-.
T Consensus       344 ~~s~~  348 (366)
T COG3490         344 FYSRA  348 (366)
T ss_pred             ecccc
Confidence            87433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.92  E-value=0.69  Score=37.18  Aligned_cols=195  Identities=9%  Similarity=0.034  Sum_probs=107.7

Q ss_pred             ceeeeeeccCCe--eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307            9 PGVHTYMAQWPI--STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         9 ~~~~~~~~~~~v--~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      +.+.++.|....  -.+.|..+   +.++-+.+.  -....|+.  ++..+++...  .......----.+....+.   
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~---g~LyESTG~--yG~S~l~~--~d~~tg~~~~--~~~l~~~~FgEGit~~~d~---  101 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDD---GTLYESTGL--YGQSSLRK--VDLETGKVLQ--SVPLPPRYFGEGITILGDK---  101 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEET---TEEEEEECS--TTEEEEEE--EETTTSSEEE--EEE-TTT--EEEEEEETTE---
T ss_pred             EEEEECCCCCcccCccEEecCC---CEEEEeCCC--CCcEEEEE--EECCCCcEEE--EEECCccccceeEEEECCE---
Confidence            456666675443  35667666   665555441  02335666  5555555544  2222222223344554443   


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                         +..-.- + ...+||.++-+  .+.++.-.      ..=..++.   +++.|+.+.....++.+|.++.+....+.-
T Consensus       102 ---l~qLTWk~~~~f~yd~~tl~--~~~~~~y~------~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  102 ---LYQLTWKEGTGFVYDPNTLK--KIGTFPYP------GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             ---EEEEESSSSEEEEEETTTTE--EEEEEE-S------SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             ---EEEEEecCCeEEEEccccce--EEEEEecC------CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEE
Confidence               333333 3 88999998765  55555432      34456663   667777777788999999988776666542


Q ss_pred             c--C---CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC---------C---CCCCCeEEEEEecCCCCeEE
Q 040307          165 H--D---REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN---------P---VQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       165 ~--~---~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------~---~~~~~v~~~~~~p~~~~~l~  227 (339)
                      .  .   ..++.+.|.++.+.|-.=....|...|..+++....+-..         .   ....-.+.|||+|..+.+++
T Consensus       168 ~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v  247 (264)
T PF05096_consen  168 TDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV  247 (264)
T ss_dssp             EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred             EECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence            2  1   2466788887877777777778888898888754433110         0   01345789999996666666


Q ss_pred             EE
Q 040307          228 TV  229 (339)
Q Consensus       228 ~~  229 (339)
                      +|
T Consensus       248 TG  249 (264)
T PF05096_consen  248 TG  249 (264)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02790 Kelch-like protein; Provisional

Probab=95.83  E-value=1.3  Score=39.72  Aligned_cols=139  Identities=10%  Similarity=-0.032  Sum_probs=72.6

Q ss_pred             CeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCeeee-
Q 040307           89 DIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT---TCVIWDIDREILET-  160 (339)
Q Consensus        89 ~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~-  160 (339)
                      .+.+.||.    .+..|+..++++.....+....     ... +++..  +++..+.|+.++   .+..||.++.+=.. 
T Consensus       320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r-----~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~  391 (480)
T PHA02790        320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR-----CNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG  391 (480)
T ss_pred             EEEEECCcCCCCceEEEECCCCeEEECCCCCCCC-----ccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence            78888772    6888888777654444443211     111 22222  678888887654   46788887654111 


Q ss_pred             -eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----e
Q 040307          161 -QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----K  235 (339)
Q Consensus       161 -~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~  235 (339)
                       .+...... .+++..++.+.+.|+   .+.+||.++.+-.. ....+...... +++..  ++++.++|+.++.    .
T Consensus       392 ~~m~~~r~~-~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~-~~~m~~~r~~~-~~~v~--~~~IYviGG~~~~~~~~~  463 (480)
T PHA02790        392 PSTYYPHYK-SCALVFGRRLFLVGR---NAEFYCESSNTWTL-IDDPIYPRDNP-ELIIV--DNKLLLIGGFYRGSYIDT  463 (480)
T ss_pred             CCCCCcccc-ceEEEECCEEEEECC---ceEEecCCCCcEeE-cCCCCCCcccc-EEEEE--CCEEEEECCcCCCcccce
Confidence             11111111 122223566777664   57789987765222 11111111222 33332  6778888876521    2


Q ss_pred             EEEEecCC
Q 040307          236 VVVLDIRF  243 (339)
Q Consensus       236 i~i~d~~~  243 (339)
                      +..||...
T Consensus       464 ve~Yd~~~  471 (480)
T PHA02790        464 IEVYNNRT  471 (480)
T ss_pred             EEEEECCC
Confidence            66777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.82  E-value=0.065  Score=29.36  Aligned_cols=32  Identities=13%  Similarity=0.028  Sum_probs=27.1

Q ss_pred             CCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCC
Q 040307          124 SAITSFDWAGFDT--RRVATCSVDTTCVIWDIDR  155 (339)
Q Consensus       124 ~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~  155 (339)
                      ++|.++.|+|..+  ++|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998555  6888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=1.1  Score=38.69  Aligned_cols=155  Identities=10%  Similarity=0.063  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee-
Q 040307          127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST-  201 (339)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-  201 (339)
                      +.+-|.  |.+..+.+...|.+.-|-.....   ++..-....++|.++.|+ |.+.+|.--.+..|.+++....+... 
T Consensus        26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            345554  44444444445666666553322   111112345699999999 88899999999999999874433211 


Q ss_pred             eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcE
Q 040307          202 IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRA  280 (339)
Q Consensus       202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v  280 (339)
                      ...+.......|....|.  +..-+|.....|  +.+|-+......++..+.|+..|+=..|.++..-.|++.+ ..+.+
T Consensus       104 ~~~~ck~k~~~IlGF~W~--~s~e~A~i~~~G--~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l  179 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWT--SSTEIAFITDQG--IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL  179 (657)
T ss_pred             HHHHhccCcceeEEEEEe--cCeeEEEEecCC--eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence            111222234568899998  346677766666  8888877656667777888888999999998743333333 33444


Q ss_pred             EEEEecC
Q 040307          281 LIWEVVG  287 (339)
Q Consensus       281 ~iwd~~~  287 (339)
                      .=+.++.
T Consensus       180 npf~~~~  186 (657)
T KOG2377|consen  180 NPFHFRA  186 (657)
T ss_pred             ccEEEee
Confidence            4444443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.73  E-value=2  Score=41.07  Aligned_cols=168  Identities=13%  Similarity=0.133  Sum_probs=103.5

Q ss_pred             cCCCCceEEEEc---CCCCCCCCCeEEEeCC-cEEEEeec------CC-------cceeEEEeecCCCccCCCCEEEEEE
Q 040307           69 DHPYTPTNIAFF---PSEETLNPDIVATSGD-SLRLWEIH------DD-------RTELKSLLNSNKTSEFSSAITSFDW  131 (339)
Q Consensus        69 ~~~~~v~~l~~~---~~~~~~~~~~la~~~~-~i~iw~~~------~~-------~~~~~~~~~~~~~~~~~~~i~~~~~  131 (339)
                      ....+|..|+|.   ... ...+++|++=.. .+.|+...      ..       ...++..+..+...+  .+..+++|
T Consensus        77 ~~~~PI~qI~fa~~~~~~-~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg--~~~aDv~F  153 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESF-DEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGG--FPHADVAF  153 (765)
T ss_pred             CCCCCeeEEEeccccccc-CCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCC--CccceEEe
Confidence            567789999998   211 012258888776 77777721      11       123444554333222  46779999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCe-----eeeeeeccCC----------ceeEEEec-CCcEEEEEeCCCcEEEEECC
Q 040307          132 AGFDTRRVATCSVDTTCVIWDIDREI-----LETQLVAHDR----------EVYDISWG-GFNVFASVSGDCSVRVFDLR  195 (339)
Q Consensus       132 ~~~~~~~l~~~~~d~~v~i~d~~~~~-----~~~~~~~~~~----------~v~~~~~~-~~~~l~~~~~d~~i~i~d~~  195 (339)
                      +|.+...||.-...|.-.||++....     .+.....+.+          .-..+.|. +.+.|+.++. ..+.++|+.
T Consensus       154 nP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~  232 (765)
T PF10214_consen  154 NPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE  232 (765)
T ss_pred             ccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence            99888999999999999999992111     1111111112          22367787 5566666654 578999999


Q ss_pred             CCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          196 DKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       196 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      +......+.. ......|..+.-+|.+..+++.-+. .. |...|+..
T Consensus       233 ~~~~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLTs-~e-iiw~~~~~  277 (765)
T PF10214_consen  233 SNWQTEYLVT-AKTWSWILDVKRSPDNPSHVFILTS-KE-IIWLDVKS  277 (765)
T ss_pred             CCCccchhcc-CCChhheeeEEecCCccceEEEEec-Ce-EEEEEccC
Confidence            8875332222 1244678999988854455554443 33 88888876

These proteins are found in fungi.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.54  E-value=0.34  Score=46.35  Aligned_cols=151  Identities=12%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEe--C-C-cEEEEeecCCcc---eeEEEeecCCCc-cCCCCEEEEEEcCCCCCEEEE
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATS--G-D-SLRLWEIHDDRT---ELKSLLNSNKTS-EFSSAITSFDWAGFDTRRVAT  141 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~--~-~-~i~iw~~~~~~~---~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~  141 (339)
                      ..-++..+..++|.     .+.++.  + + .|..||+.+-..   +....|..|... ....-..++.|+|.-....+.
T Consensus        99 k~~pi~~~v~~~D~-----t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av  173 (1405)
T KOG3630|consen   99 KEIPIVIFVCFHDA-----TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV  173 (1405)
T ss_pred             ccccceEEEeccCC-----ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh
Confidence            34456667777776     444433  2 3 899999876431   112222222210 011334578899865667788


Q ss_pred             EeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEE
Q 040307          142 CSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEW  218 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~  218 (339)
                      +..|+.|++..+.... .+..+ .....+++++|+ .|..++.|-..|++.-|...-..... +...+ .....|.++.|
T Consensus       174 ~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  174 DLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-IPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             hccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeec-ccCCCcCCCcceeEEEE
Confidence            8889999988775433 22233 345678999999 69999999999999988765442221 12221 12478999999


Q ss_pred             ecCCCCeEEE
Q 040307          219 NKADPRFMAT  228 (339)
Q Consensus       219 ~p~~~~~l~~  228 (339)
                      -. ...++++
T Consensus       252 l~-t~eflvv  260 (1405)
T KOG3630|consen  252 LS-TQEFLVV  260 (1405)
T ss_pred             ec-ceeEEEE
Confidence            85 4455544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.52  E-value=0.42  Score=41.70  Aligned_cols=147  Identities=12%  Similarity=0.032  Sum_probs=91.1

Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC--------CcEEEEEeCCCcEEEEECCCCcceeeEEe
Q 040307          135 DTRRVA-TCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG--------FNVFASVSGDCSVRVFDLRDKERSTIIYE  205 (339)
Q Consensus       135 ~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  205 (339)
                      +.++|. .|+....++--|++.|+.+.....|...  -+.|.|        ...-+.|-.+..|.-.|.|-........+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444444 4556677888899999988888766654  356653        12233444566676677775542222222


Q ss_pred             CC--CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          206 NP--VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       206 ~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      ..  ..+....+..-  ....++|+++..|. |++||--. ......+.+-...|..|..+.+|..+|+||  ...+.+-
T Consensus       556 sKdY~tKn~Fss~~t--TesGyIa~as~kGD-irLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~  629 (776)
T COG5167         556 SKDYKTKNKFSSGMT--TESGYIAAASRKGD-IRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLT  629 (776)
T ss_pred             ehhcccccccccccc--ccCceEEEecCCCc-eeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEE
Confidence            10  01122222222  25679999999999 99999543 334455667778999999999995444444  3577788


Q ss_pred             EecCCC
Q 040307          284 EVVGPG  289 (339)
Q Consensus       284 d~~~~~  289 (339)
                      |++-..
T Consensus       630 d~~ik~  635 (776)
T COG5167         630 DVPIKY  635 (776)
T ss_pred             eccccc
Confidence            876554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.50  E-value=1.9  Score=40.06  Aligned_cols=114  Identities=13%  Similarity=0.156  Sum_probs=72.5

Q ss_pred             ceeEEEec---CCcEEEEEeCCCcEEEEECCCC-----------c--------ceeeEEeCCCCCCCeEEEEEe--cCCC
Q 040307          168 EVYDISWG---GFNVFASVSGDCSVRVFDLRDK-----------E--------RSTIIYENPVQDCPLLRLEWN--KADP  223 (339)
Q Consensus       168 ~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~-----------~--------~~~~~~~~~~~~~~v~~~~~~--p~~~  223 (339)
                      .|+.|...   ....|+.|..||.|.+|.+..-           .        .+.....   -...++.++++  . ..
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~-~~  177 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYK-KS  177 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecC-cc
Confidence            45666555   4778999999999999976211           0        0111111   23578889987  4 56


Q ss_pred             CeEEEEeeCCCeEEEEecCCC--CCceEEEecCCCCeeEEEeccCC--CC---eEEEEeCCCcEEEEEec
Q 040307          224 RFMATVGMDSNKVVVLDIRFP--TNPVVVLSKHEGSVNGISWAPLY--GR---RLCSVADDSRALIWEVV  286 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~~~~~dg~v~iwd~~  286 (339)
                      ++||+++.... |.||-....  ......-..|...|.+|+|-++.  +.   .|++++-.|.+.+|++.
T Consensus       178 rlIAVSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  178 RLIAVSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             eEEEEecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            67777666665 777755431  11111111256678999998764  22   77888899999999984

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.47  E-value=1.1  Score=36.31  Aligned_cols=152  Identities=17%  Similarity=0.106  Sum_probs=84.9

Q ss_pred             CEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEE-CCCCcc
Q 040307          125 AITSFDWAGFDTRRVATCS---VDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFD-LRDKER  199 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~  199 (339)
                      .+...++++ +++.++...   ....++++..  +....... ....+..-.|+ ++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            678899998 888777655   3345555554  33222221 22367778888 565555555566666663 333332


Q ss_pred             eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC--CCeEEEEecCCC--C------CceEEEecCCCCeeEEEeccCCCC
Q 040307          200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMD--SNKVVVLDIRFP--T------NPVVVLSKHEGSVNGISWAPLYGR  269 (339)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--~~~i~i~d~~~~--~------~~~~~~~~~~~~v~~~~~~p~~~~  269 (339)
                      .......+.....|..+.++| +|..++....+  +.+|.+--+...  +      .+..........+..++|.+++. 
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-  178 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-  178 (253)
T ss_pred             eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-
Confidence            222222211222899999999 77777665532  123666544321  1      12222223346889999999984 


Q ss_pred             eEEEEeC-CCcEEE
Q 040307          270 RLCSVAD-DSRALI  282 (339)
Q Consensus       270 ~l~~~~~-dg~v~i  282 (339)
                      +++.+.. ++.+..
T Consensus       179 L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  179 LVVLGRSAGGPVVR  192 (253)
T ss_pred             EEEEeCCCCCceeE
Confidence            5555543 343444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02790 Kelch-like protein; Provisional

Probab=95.43  E-value=1.9  Score=38.77  Aligned_cols=181  Identities=7%  Similarity=-0.165  Sum_probs=88.5

Q ss_pred             CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCe--
Q 040307           89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--TTCVIWDIDREI--  157 (339)
Q Consensus        89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~--  157 (339)
                      .+++.||.       .+..||..++++.....+....     ... +++..  ++.+.+.|+.+  ..+..||..+++  
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-----~~~-~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~  344 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-----LYA-SGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWV  344 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-----hcc-eEEEE--CCEEEEECCcCCCCceEEEECCCCeEE
Confidence            56677761       5667888777644444433221     111 22222  67888888764  357788876553  


Q ss_pred             eeeeeeccCCceeEEEecCCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307          158 LETQLVAHDREVYDISWGGFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN  234 (339)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~  234 (339)
                      .+..+. ....-.+++..++.+.+.||.++   .+..||.++.+-... ...+...... +++-  -++.+.+.|+   .
T Consensus       345 ~~~~l~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~-~~~~--~~~~IYv~GG---~  416 (480)
T PHA02790        345 NMPSLL-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKS-CALV--FGRRLFLVGR---N  416 (480)
T ss_pred             ECCCCC-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccc-eEEE--ECCEEEEECC---c
Confidence            111221 11111223333688888888654   467888877652211 1111111111 2222  2566666663   4


Q ss_pred             eEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          235 KVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       235 ~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                       +.+||.++.. ..+..+....... +++. -++ ++.+.|+.+     ..+..||....+
T Consensus       417 -~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        417 -AEFYCESSNTWTLIDDPIYPRDNP-ELII-VDN-KLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             -eEEecCCCCcEeEcCCCCCCcccc-EEEE-ECC-EEEEECCcCCCcccceEEEEECCCCe
Confidence             7788876522 1111111111111 2222 244 577777754     346666666543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.19  E-value=0.0087  Score=51.20  Aligned_cols=240  Identities=12%  Similarity=0.128  Sum_probs=134.4

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---C
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---D   96 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---~   96 (339)
                      .....|-|.   +.-++.++    .+..+..  +|..+....     +...++....++|..++     +.++...   +
T Consensus        37 pi~~~w~~e---~~nlavac----a~tiv~~--YD~agq~~l-----e~n~tg~aldm~wDkeg-----dvlavlAek~~   97 (615)
T KOG2247|consen   37 PIIHRWRPE---GHNLAVAC----ANTIVIY--YDKAGQVIL-----ELNPTGKALDMAWDKEG-----DVLAVLAEKTG   97 (615)
T ss_pred             cceeeEecC---CCceehhh----hhhHHHh--hhhhcceec-----ccCCchhHhhhhhcccc-----chhhhhhhcCC
Confidence            345577787   55577777    4777777  444443333     24566777888999888     4444433   4


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG  176 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~  176 (339)
                      .+.+|++++.....+..-..+.     ..  -+.|++ ....++.+...|.+.|++..+.+.+.....|...++++++..
T Consensus        98 piylwd~n~eytqqLE~gg~~s-----~s--ll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   98 PIYLWDVNSEYTQQLESGGTSS-----KS--LLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             CeeechhhhhhHHHHhccCcch-----HH--HHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            9999999876422221111111     22  267887 778888888999999999888776666645889999999997


Q ss_pred             CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE---EEecCCCCeEEEEeeCCCeEEEEecCCCCCce-EEEe
Q 040307          177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL---EWNKADPRFMATVGMDSNKVVVLDIRFPTNPV-VVLS  252 (339)
Q Consensus       177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~---~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~-~~~~  252 (339)
                      .++.+.++.|..+.+-...+...................+   .|.. .+..+...-..+..+..-......++. ..++
T Consensus       170 Ed~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~k-age~m~sVvsgKkhl~yak~nE~D~pval~fq  248 (615)
T KOG2247|consen  170 EDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGK-AGETMVSVVSGKKHLMYAKYNELDEPVALQFQ  248 (615)
T ss_pred             cceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeecccc-ccceeeeeeecHHHHHHHhhcCCCCccceEee
Confidence            6777777777655543322221111100000000111111   2332 334443322222101111111111221 2555


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ...+.+.++.|--||  .|.-+..-|.|..-...+.+
T Consensus       249 ~~~gni~cyrwylDg--~i~igf~ag~iV~iS~h~ae  283 (615)
T KOG2247|consen  249 EKYGNIHCYRWYLDG--YILIGFDAGYIVSISAHNAE  283 (615)
T ss_pred             ecCCceeEEEEeccc--cccccccceeEEEEeccchH
Confidence            556788999999887  45555555555555544433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.16  E-value=2.6  Score=39.13  Aligned_cols=106  Identities=12%  Similarity=0.063  Sum_probs=70.3

Q ss_pred             CCCeEEEEeeCCCeEEEEecCCC-------------------CCceEEEecCCCCeeEEEec--cCCCCeEEEEeCCCcE
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFP-------------------TNPVVVLSKHEGSVNGISWA--PLYGRRLCSVADDSRA  280 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~-------------------~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~v  280 (339)
                      +...|+++.+||. |.+|.+..-                   -+|...+.. ...+++++++  ... ++||+++....|
T Consensus       113 ~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~-rlIAVSsNs~~V  189 (717)
T PF08728_consen  113 GEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKS-RLIAVSSNSQEV  189 (717)
T ss_pred             CeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcc-eEEEEecCCceE
Confidence            4568888888888 999965210                   013333332 4478999998  666 688888888889


Q ss_pred             EEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC---C---ceEEEecCCeEEEEeC
Q 040307          281 LIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE---L---DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~---~---~l~~~~~d~~v~~w~v  339 (339)
                      .||-+.....+.         .......+...|-+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       190 TVFaf~l~~~r~---------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  190 TVFAFALVDERF---------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEecccccc---------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            998777643110         011122366779999998865   1   3556778888888764

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.97  E-value=1.3  Score=34.32  Aligned_cols=102  Identities=10%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----C---cEEEE---eecCCcceeEE
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----D---SLRLW---EIHDDRTELKS  112 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----~---~i~iw---~~~~~~~~~~~  112 (339)
                      ..+.|.+|++..+......    .+..-+.|..+.++..|     ++|++--     +   .+|+|   +....+..++.
T Consensus        36 ~g~~Vev~~l~~~~~~~~~----~F~Tv~~V~~l~y~~~G-----DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   36 SGCKVEVYDLEQEECPLLC----TFSTVGRVLQLVYSEAG-----DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             CCCEEEEEEcccCCCceeE----EEcchhheeEEEecccc-----ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            3689999988854444444    46677899999999999     8999853     1   45654   32211111111


Q ss_pred             -EeecCCCc----------------cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307          113 -LLNSNKTS----------------EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE  156 (339)
Q Consensus       113 -~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  156 (339)
                       .+-||...                ....++.+++-.|..|++++.+  ++.+.+|.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence             22232200                0124667788888677766654  468888877543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.87  E-value=0.93  Score=44.27  Aligned_cols=138  Identities=10%  Similarity=0.153  Sum_probs=79.5

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEE--------EcCCCCCCCCCeEEEeCC-cEEEEeecCCcc------
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIA--------FFPSEETLNPDIVATSGD-SLRLWEIHDDRT------  108 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~--------~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~------  108 (339)
                      -|+.+.+|+++.++.....     -+....|..+.        |.|.-+    .+|+.+.- .|.|+-+.-.+.      
T Consensus        97 iDn~L~lWny~~~~e~~~~-----d~~shtIl~V~LvkPkpgvFv~~Iq----hlLvvaT~~ei~ilgV~~~~~~~~~~~  167 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEY-----DGLSHTILKVGLVKPKPGVFVPEIQ----HLLVVATPVEIVILGVSFDEFTGELSI  167 (1311)
T ss_pred             eCCeEEEEEcCCCCccccc-----cchhhhheeeeeecCCCCcchhhhh----eeEEecccceEEEEEEEeccccCcccc
Confidence            3899999999884433322     23334454444        344432    56666665 666665543320      


Q ss_pred             -eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE--EEECCCC---e-----------------eeeeee-c
Q 040307          109 -ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV--IWDIDRE---I-----------------LETQLV-A  164 (339)
Q Consensus       109 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~--i~d~~~~---~-----------------~~~~~~-~  164 (339)
                       .....+....     ..|+++... .+|+.|++ +.||.|+  +|....+   +                 .+..+. .
T Consensus       168 f~~~~~i~~dg-----~~V~~I~~t-~nGRIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~  240 (1311)
T KOG1900|consen  168 FNTSFKISVDG-----VSVNCITYT-ENGRIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS  240 (1311)
T ss_pred             cccceeeecCC-----ceEEEEEec-cCCcEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence             0011111112     578888855 36666655 4566544  2222221   0                 111222 4


Q ss_pred             cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCC
Q 040307          165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDK  197 (339)
Q Consensus       165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~  197 (339)
                      +.++|..+... ..+++.+-+..++|.+||+...
T Consensus       241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            56789999998 5778888899999999999874

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.83  E-value=0.95  Score=32.08  Aligned_cols=122  Identities=9%  Similarity=0.032  Sum_probs=68.5

Q ss_pred             EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc--ceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEE
Q 040307           24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS--ADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRL  100 (339)
Q Consensus        24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~i  100 (339)
                      +|...   ...|++++    ..|+|.|++-........  ......+.-...|++|+--+-......+.|+.|+. .+..
T Consensus         5 kfDG~---~pcL~~aT----~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~lla   77 (136)
T PF14781_consen    5 KFDGV---HPCLACAT----TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLA   77 (136)
T ss_pred             EeCCC---ceeEEEEe----cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence            45555   56788888    689999965443221110  00011245667788886544321112389999997 9999


Q ss_pred             EeecCCcceeEEEeecCCCccCCCCEEEEEEc---CCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWA---GFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                      ||+....-...+.+.        ..|+++.+-   .....+++. +-+..|.-||.+-.+...+
T Consensus        78 YDV~~N~d~Fyke~~--------DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   78 YDVENNSDLFYKEVP--------DGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             EEcccCchhhhhhCc--------cceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEE
Confidence            999887522222222        355565552   212344444 4457777777655554443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.70  E-value=4.1  Score=39.23  Aligned_cols=171  Identities=14%  Similarity=0.114  Sum_probs=97.8

Q ss_pred             Cceeeeeecc-----CCeeEEEeeecCCcccEEEEeee-------ccccCCeEEEEecCCCCCcccceeeEeecCCCCce
Q 040307            8 KPGVHTYMAQ-----WPISTVAWSVRHDRKSRLAVGSF-------LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT   75 (339)
Q Consensus         8 ~~~~~~~~~~-----~~v~~i~~sp~~~~~~~la~g~~-------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~   75 (339)
                      ++.+...++.     ..+.++.|+.... ..++++|..       ..-.+|.++.|++-..+..+..  .....-.+.| 
T Consensus       863 ~~~~~~~~l~~ne~a~~v~~~~fs~~~~-~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel--lh~T~~~~~v-  938 (1205)
T KOG1898|consen  863 GKIICLVELGQNEAAFSVCAVDFSSSEY-QPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL--LHKTEIPGPV-  938 (1205)
T ss_pred             CceEEEEeecCCcchhheeeeeeccCCC-ceEEEEEeeccccccccccCCCceEEEEEEecCceeee--eeccCCCccc-
Confidence            4444555543     3467777776622 235666653       1113455777776666554443  1112223444 


Q ss_pred             EEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE--EEC
Q 040307           76 NIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI--WDI  153 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i--~d~  153 (339)
                       .+.+|...    .+|+..++.+++|++...+......++.-.     ..|+.+.+.   +..++.|...-.|..  |+.
T Consensus       939 -~Ai~~f~~----~~LagvG~~l~~YdlG~K~lLRk~e~k~~p-----~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  939 -GAICPFQG----RVLAGVGRFLRLYDLGKKKLLRKCELKFIP-----NRISSIQTY---GARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             -eEEeccCC----EEEEecccEEEEeeCChHHHHhhhhhccCc-----eEEEEEeec---ceEEEEeeccceEEEEEEec
Confidence             44567662    455555669999999887632222333222     678888874   577888877666664  444


Q ss_pred             CCCeeeeeeec--cCCceeEEEecCCcEEEEEeCCCcEEEEECCC
Q 040307          154 DREILETQLVA--HDREVYDISWGGFNVFASVSGDCSVRVFDLRD  196 (339)
Q Consensus       154 ~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~  196 (339)
                      +.. .+..+..  -...|+++.+-+.+.++.+..-|.+.+-.+..
T Consensus      1006 ~~n-~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1006 EDN-QLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCC-eEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence            333 3334422  23457777776777888888878777665543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=1.5  Score=33.72  Aligned_cols=176  Identities=16%  Similarity=0.197  Sum_probs=90.5

Q ss_pred             CeEEEeC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           89 DIVATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        89 ~~la~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                      .++.+.+  +  .|++|++.+++......+..  ..-|...++.+     ....-+-.-.+|.-.++|.++-+++..+. 
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~-  128 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFS-  128 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccc-
Confidence            5666665  2  99999999887433344432  11121223322     22233334567888899998888777764 


Q ss_pred             cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEEEecCCCCeEEEEeeCC---------
Q 040307          165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLEWNKADPRFMATVGMDS---------  233 (339)
Q Consensus       165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~---------  233 (339)
                      ..+.=+.++..+.+ |+.+....+++.-|..+-.....+....  ..-..++-+.|-  +|.+.|-.-.+.         
T Consensus       129 y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         129 YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             cCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCC
Confidence            44555667665444 5555555567766665543222211110  001122333442  344333332222         


Q ss_pred             -CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307          234 -NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       234 -~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                       ..+..+|+......+..-..|..-.+.|++.|++.++++||-
T Consensus       206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence             212223433222222222334557789999999876777763

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.57  E-value=0.0042  Score=53.03  Aligned_cols=140  Identities=13%  Similarity=0.197  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEE
Q 040307          127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIY  204 (339)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~  204 (339)
                      ....|-| ++.-++.+..+..+..||-. ++...... .++....++|. ++. .++.+-..+.+.+||+.+......-.
T Consensus        38 i~~~w~~-e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   38 IIHRWRP-EGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             ceeeEec-CCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            3567877 55558888888999999953 43333332 44556678888 544 45556677899999998775333322


Q ss_pred             eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      .. .+..  .-+.|++ ....++.+...+. +.|++.... ..+.....|...+.+++|.+.+  +.+.++.|
T Consensus       115 gg-~~s~--sll~wsK-g~~el~ig~~~gn-~viynhgts-R~iiv~Gkh~RRgtq~av~lEd--~vil~dcd  179 (615)
T KOG2247|consen  115 GG-TSSK--SLLAWSK-GTPELVIGNNAGN-IVIYNHGTS-RRIIVMGKHQRRGTQIAVTLED--YVILCDCD  179 (615)
T ss_pred             cC-cchH--HHHhhcc-CCccccccccccc-eEEEeccch-hhhhhhcccccceeEEEecccc--eeeecCcH
Confidence            22 1112  2278987 7788888888888 999998763 3333444488899999999986  45555444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.38  E-value=0.86  Score=40.02  Aligned_cols=75  Identities=13%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             CeEEEEEecCCCCeEEEEeeCCCeEEEEecCC---------CCCceEEEe-----------cCCCCeeEEEeccCC--CC
Q 040307          212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRF---------PTNPVVVLS-----------KHEGSVNGISWAPLY--GR  269 (339)
Q Consensus       212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~---------~~~~~~~~~-----------~~~~~v~~~~~~p~~--~~  269 (339)
                      .|..+..++ .|..++..+.+|  |.|..+..         .+++....+           ...-.+..++|+|+.  +.
T Consensus       105 eV~~vl~s~-~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  105 EVYQVLLSP-TGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEecC-CCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence            466778887 899998888888  55544411         112111110           111256788999986  55


Q ss_pred             eEEEEeCCCcEEEEEecCCC
Q 040307          270 RLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       270 ~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .|..-+.|+.+++||+....
T Consensus       182 hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             eEEEEecCcEEEEEecCCcc
Confidence            78888889999999998766

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.23  E-value=3.4  Score=35.93  Aligned_cols=152  Identities=10%  Similarity=-0.046  Sum_probs=83.7

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc-cceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcE
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF-SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSL   98 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i   98 (339)
                      ...+..+++   +.++++|.     .|.+..  -...+..+ ..   ........+..+.|.+++     .+++++.+--
T Consensus       241 f~~v~~~~d---G~~~~vg~-----~G~~~~--s~d~G~~~W~~---~~~~~~~~l~~v~~~~dg-----~l~l~g~~G~  302 (398)
T PLN00033        241 FSTVNRSPD---GDYVAVSS-----RGNFYL--TWEPGQPYWQP---HNRASARRIQNMGWRADG-----GLWLLTRGGG  302 (398)
T ss_pred             eeeEEEcCC---CCEEEEEC-----CccEEE--ecCCCCcceEE---ecCCCccceeeeeEcCCC-----CEEEEeCCce
Confidence            445566777   88888888     565443  33333332 21   124456678999999999     7888776633


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee---ccCCceeEEEec
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV---AHDREVYDISWG  175 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---~~~~~v~~~~~~  175 (339)
                      .++..+.++......+.......-...+.++.|.+ ++.. +.++..|.+.... ..++......   .-...++.+.|.
T Consensus       303 l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~  379 (398)
T PLN00033        303 LYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFF  379 (398)
T ss_pred             EEEecCCCCcccccceeecccCCCCcceEEEEEcC-CCcE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEc
Confidence            44444444311111111111000003588899985 5554 4555677766543 4455433332   223567899988


Q ss_pred             CCcEEEEEeCCCcEEEE
Q 040307          176 GFNVFASVSGDCSVRVF  192 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~  192 (339)
                      +.+.....+.+|.|.-|
T Consensus       380 ~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        380 DDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCCceEEEeCCcEEEEe
Confidence            44444555567776544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.10  E-value=2.2  Score=33.14  Aligned_cols=160  Identities=18%  Similarity=0.202  Sum_probs=86.9

Q ss_pred             EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-----eEEEE---ecC
Q 040307          171 DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-----KVVVL---DIR  242 (339)
Q Consensus       171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-----~i~i~---d~~  242 (339)
                      .++-...+.|+.+.....|.+|++..........-.  --+.|..+.++. .|++|++--.+..     .+++|   +..
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhh
Confidence            333343244444456678999999944432222211  237899999997 8999998655543     24554   222


Q ss_pred             -CCCCceE-EEecC---------------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          243 -FPTNPVV-VLSKH---------------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       243 -~~~~~~~-~~~~~---------------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                       ....++. .+.+|                     ..++.+++..|-.+ -|+.|+ ++.+.||.+........+ ....
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~-~~~l  175 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEK-FSFL  175 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEeccc-ccEE
Confidence             1122322 22222                     23567788888754 455555 468999988876510000 0000


Q ss_pred             cccceeeecc-cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          300 DVEPELCYQS-MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       300 ~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..+.....-| .-.+..+++..+   ++|...+-.+++++|
T Consensus       176 DFe~~l~~~~~~~~p~~v~ic~~---yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  176 DFERSLIDHIDNFKPTQVAICEG---YIAVMSDLEVLVLKL  213 (215)
T ss_pred             echhhhhheecCceEEEEEEEee---EEEEecCCEEEEEEE
Confidence            0001111112 233667777654   677788888888775

>PRK13684 Ycf48-like protein; Provisional

Probab=93.74  E-value=3.8  Score=34.78  Aligned_cols=152  Identities=11%  Similarity=0.022  Sum_probs=77.9

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..+.++.+.| ++.++++ +..|.+..-.-..++....+. .-...++++.+. ++..++. +..|.+++=....+..-.
T Consensus       173 g~~~~i~~~~-~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        173 GVVRNLRRSP-DGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWS  249 (334)
T ss_pred             ceEEEEEECC-CCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccc
Confidence            6788999987 6665555 445655432112223222222 234578888888 4555544 556766432233332211


Q ss_pred             eEEeC-CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          202 IIYEN-PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       202 ~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      ..... ......+..+.+.| ++..+++ +.++. + +..... ++......   .-....+.+.|..++ +.++ .+..
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~-v-~~S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~-~G~~  322 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGT-L-LVSKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE-KGFV-LGQR  322 (334)
T ss_pred             cccCCccccccceeeEEEcC-CCCEEEE-cCCCe-E-EEeCCC-CCCCeECCcCCCCCcceEEEEEeCCC-ceEE-ECCC
Confidence            11111 00123577889987 6665554 45554 3 333332 33333332   112357788887665 3554 5556


Q ss_pred             CcEEEEEe
Q 040307          278 SRALIWEV  285 (339)
Q Consensus       278 g~v~iwd~  285 (339)
                      |.|.-|+-
T Consensus       323 G~il~~~~  330 (334)
T PRK13684        323 GVLLRYVG  330 (334)
T ss_pred             ceEEEecC
Confidence            77776653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.66  E-value=6  Score=36.78  Aligned_cols=68  Identities=15%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      ..-++++.-+|.   ++.++.+.    .||.|++|+|.+.......      ....+-..+.|...|      ++...+|
T Consensus        14 ~e~~~aiqshp~---~~s~v~~~----~d~si~lfn~~~r~qski~------~~~~p~~nlv~tnhg------l~~~tsd   74 (1636)
T KOG3616|consen   14 DEFTTAIQSHPG---GQSFVLAH----QDGSIILFNFIPRRQSKIC------EEAKPKENLVFTNHG------LVTATSD   74 (1636)
T ss_pred             cceeeeeeecCC---CceEEEEe----cCCcEEEEeecccchhhhh------hhcCCccceeeeccc------eEEEecc
Confidence            345778888899   99999999    7999999998866543332      223344566677666      3333344


Q ss_pred             -cEEEEee
Q 040307           97 -SLRLWEI  103 (339)
Q Consensus        97 -~i~iw~~  103 (339)
                       .+.-|.-
T Consensus        75 rr~la~~~   82 (1636)
T KOG3616|consen   75 RRALAWKE   82 (1636)
T ss_pred             chhheeec
Confidence             6666653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.62  E-value=4.5  Score=35.27  Aligned_cols=94  Identities=16%  Similarity=0.196  Sum_probs=55.6

Q ss_pred             EEEEcCCCCCCCCCeEEEeCC-c-E---EEEeecC-C--cceeEEEeecCCCccCCCCEEEEEEcCC----------CCC
Q 040307           76 NIAFFPSEETLNPDIVATSGD-S-L---RLWEIHD-D--RTELKSLLNSNKTSEFSSAITSFDWAGF----------DTR  137 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~~~-~-i---~iw~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~  137 (339)
                      .++.+|++     ++||.+.+ . +   .-|+... +  +........+.-..+....|+++.|-|.          +..
T Consensus         6 ~isls~~~-----d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~   80 (415)
T PF14655_consen    6 SISLSPDG-----DLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT   80 (415)
T ss_pred             eEEecCCC-----CEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE
Confidence            46788999     88888864 2 2   2354321 1  1111112222111111136777666542          457


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307          138 RVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus       138 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                      .++.|..+|.|++|.. +|..+....-|..+|..+...
T Consensus        81 ~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   81 CIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence            8999999999999996 565555545677788777765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.61  E-value=4.3  Score=35.00  Aligned_cols=145  Identities=9%  Similarity=-0.004  Sum_probs=74.6

Q ss_pred             CCEEEEEEcCCCCCEEEEEe-----------CCC-eEEEEECCC--Ce--eeeeeeccCCceeEEEecCCcEEEEEeCCC
Q 040307          124 SAITSFDWAGFDTRRVATCS-----------VDT-TCVIWDIDR--EI--LETQLVAHDREVYDISWGGFNVFASVSGDC  187 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~-----------~d~-~v~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~  187 (339)
                      .....|+|.+ +++++++-.           ..+ .|.+++-..  ++  ....+...-.....+++.++.+++ +....
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYV-ATPPD   91 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEE-eCCCe
Confidence            3456889997 888777653           223 777776432  22  223333333455788888433444 44443


Q ss_pred             cEEEEECCCCc----ceeeEEeC-CC----CCCCeEEEEEecCCCCeEEEEeeC-------------------CCeEEEE
Q 040307          188 SVRVFDLRDKE----RSTIIYEN-PV----QDCPLLRLEWNKADPRFMATVGMD-------------------SNKVVVL  239 (339)
Q Consensus       188 ~i~i~d~~~~~----~~~~~~~~-~~----~~~~v~~~~~~p~~~~~l~~~~~d-------------------~~~i~i~  239 (339)
                      ..++.|.....    ....+... ..    +......++|.| +|.+.++-+..                   +. |.-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~r~  169 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LFRY  169 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCce-EEEE
Confidence            33343543321    12222221 11    123477899998 77766554421                   22 3334


Q ss_pred             ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307          240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                      |..  ...+..+...-.....++|+|+| .++++-.
T Consensus       170 ~pd--g~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn  202 (367)
T TIGR02604       170 NPD--GGKLRVVAHGFQNPYGHSVDSWG-DVFFCDN  202 (367)
T ss_pred             ecC--CCeEEEEecCcCCCccceECCCC-CEEEEcc
Confidence            433  22233333223345789999998 4665543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.48  E-value=4.6  Score=34.86  Aligned_cols=153  Identities=12%  Similarity=0.085  Sum_probs=76.0

Q ss_pred             CCeeEEEeeecCCcccEEEEeeec-------cccCC-eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFL-------EDYSN-KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~-------~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      ..+..|+|.++   |+++++-...       ....+ .|.+++-....+.......+ ...-.....+++.+++      
T Consensus        14 ~~P~~ia~d~~---G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~G------   83 (367)
T TIGR02604        14 RNPIAVCFDER---GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVGG------   83 (367)
T ss_pred             CCCceeeECCC---CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecCC------
Confidence            45678999999   8877664210       00123 67774322223333221122 2233456889998876      


Q ss_pred             eEEEeCCcEEEE-eecCC-----cceeE-EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------------
Q 040307           90 IVATSGDSLRLW-EIHDD-----RTELK-SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----------------  145 (339)
Q Consensus        90 ~la~~~~~i~iw-~~~~~-----~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------------  145 (339)
                      ++++....|..+ +.+..     +.+.+ ..+.... .........+.|.| ++.+.++-+..                 
T Consensus        84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~  161 (367)
T TIGR02604        84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQI-NNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQG  161 (367)
T ss_pred             EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCC-CcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccc
Confidence            555554555434 54322     11111 1222210 00114577899998 88776654421                 


Q ss_pred             --CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEE
Q 040307          146 --TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV  183 (339)
Q Consensus       146 --~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~  183 (339)
                        |.|.-++...++. ..+...-.....++|+ .++++++-
T Consensus       162 ~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       162 LGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             cCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence              3455555554432 2222112234578887 56665543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.02  E-value=2.6  Score=36.67  Aligned_cols=76  Identities=13%  Similarity=0.094  Sum_probs=53.0

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec----C-C---------------c--EEE
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG----G-F---------------N--VFA  181 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~----~-~---------------~--~l~  181 (339)
                      ..+.++..+| ++++.|+...-|.|.++|+.++..++.+++..+.-  +.|.    + .               .  +++
T Consensus       308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEE
Confidence            5678899999 78999998888999999999998777777655421  2221    1 1               1  233


Q ss_pred             EEeCCCcEEEEECCCCcceee
Q 040307          182 SVSGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       182 ~~~~d~~i~i~d~~~~~~~~~  202 (339)
                      -+-.-|.|.+|.++.+.....
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a  405 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAA  405 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEE
Confidence            445567788888887764443

>PRK10115 protease 2; Provisional

Probab=92.91  E-value=8.6  Score=36.39  Aligned_cols=193  Identities=14%  Similarity=0.118  Sum_probs=101.2

Q ss_pred             CceEEEEcCCCCCCCCCeEEEeC----C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           73 TPTNIAFFPSEETLNPDIVATSG----D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~----~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+..+.|+|++     ++||.+.    +   .|++.|+.+++. ....+.+       .. ..++|.+ +++.|+.+..+
T Consensus       128 ~l~~~~~Spdg-----~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~~-------~~-~~~~w~~-D~~~~~y~~~~  192 (686)
T PRK10115        128 TLGGMAITPDN-----TIMALAEDFLSRRQYGIRFRNLETGNW-YPELLDN-------VE-PSFVWAN-DSWTFYYVRKH  192 (686)
T ss_pred             EEeEEEECCCC-----CEEEEEecCCCcEEEEEEEEECCCCCC-CCccccC-------cc-eEEEEee-CCCEEEEEEec
Confidence            36678899999     7887653    2   788899987651 1122221       12 4689997 77766655432


Q ss_pred             ------CeEEEEECCCC--eeeeeeeccCCcee-EEEec-CCcEEEEEeC---CCcEEEEECCCCc-ceeeEEeCCCCCC
Q 040307          146 ------TTCVIWDIDRE--ILETQLVAHDREVY-DISWG-GFNVFASVSG---DCSVRVFDLRDKE-RSTIIYENPVQDC  211 (339)
Q Consensus       146 ------~~v~i~d~~~~--~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~~  211 (339)
                            ..|+.+++.++  +....+........ .+..+ ++.+++..+.   ++.+.+++..... ....+...  ...
T Consensus       193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~  270 (686)
T PRK10115        193 PVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR--RKD  270 (686)
T ss_pred             CCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC--CCC
Confidence                  36888888877  33333433222222 22334 5665554433   3578888854321 11222222  112


Q ss_pred             CeEEEEEecCCCCeEEEEeeCC-C-eEEEEecCCCCCceEEEecC-C-CCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          212 PLLRLEWNKADPRFMATVGMDS-N-KVVVLDIRFPTNPVVVLSKH-E-GSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       212 ~v~~~~~~p~~~~~l~~~~~d~-~-~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      ....+. +. .+.+++....+. . .|...++....+ ...+..+ . ..+..+.+..+  .++++...+|.-+++-+..
T Consensus       271 ~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        271 HEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQINR  345 (686)
T ss_pred             CEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEcC
Confidence            222222 32 333333322222 2 243344442122 3444444 2 36788888733  5777888888777766654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.78  E-value=7.5  Score=35.42  Aligned_cols=53  Identities=13%  Similarity=0.126  Sum_probs=36.6

Q ss_pred             eEEEEECCCCeeeeeeeccCCceeE---------EEec-CC---cEEEEEeCCCcEEEEECCCCcc
Q 040307          147 TCVIWDIDREILETQLVAHDREVYD---------ISWG-GF---NVFASVSGDCSVRVFDLRDKER  199 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~~~v~~---------~~~~-~~---~~l~~~~~d~~i~i~d~~~~~~  199 (339)
                      .|.-.|+++++....++.....+.+         +... ++   ..++.+..+|.+++.|-++++.
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            6777799999987777643322222         2221 33   3788999999999999998874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.77  E-value=0.71  Score=24.65  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             EecCCCCeeEEEeccCCCCeEEEEeCC--CcEEEE
Q 040307          251 LSKHEGSVNGISWAPLYGRRLCSVADD--SRALIW  283 (339)
Q Consensus       251 ~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~v~iw  283 (339)
                      +......-....|+|||..++.+...+  |...||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344455678899999996555566666  766666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.62  E-value=5.8  Score=36.76  Aligned_cols=83  Identities=14%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             CCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          144 VDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       144 ~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      .--.|+|++. +|+.+..+.-....+-.+.|++...|++...+|++++|++-...........+.....|..+.+.. +|
T Consensus        62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~G  139 (829)
T KOG2280|consen   62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NG  139 (829)
T ss_pred             cceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-Cc
Confidence            3456888887 566565554334478899999888888889999999999876543321111111233455555553 55


Q ss_pred             CeEEE
Q 040307          224 RFMAT  228 (339)
Q Consensus       224 ~~l~~  228 (339)
                      -.+++
T Consensus       140 Vavlt  144 (829)
T KOG2280|consen  140 VAVLT  144 (829)
T ss_pred             eEEEe
Confidence            44433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.62  E-value=0.21  Score=46.47  Aligned_cols=103  Identities=13%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC--CCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF--DTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d  145 (339)
                      .+..+.|-.++|-....   |+.. ---+.+.||+++--+.+....+..+....+...+.-+.|.|.  +.-++..+-.+
T Consensus       129 kgf~G~v~dl~fah~~~---pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKC---PKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             hcCCCCcccccccccCC---hHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            46677788888865442   2332 111277888876432112222222211112245566677663  55677777888


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                      +.+++...++... ..+.+|...+.+++|-
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~  233 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFF  233 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHH
Confidence            8998877755432 4455688888877765

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.29  E-value=6.7  Score=33.69  Aligned_cols=188  Identities=11%  Similarity=0.030  Sum_probs=97.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-----CCc---EEEEEeCC---CcEEEEECCCCc-ceee
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-----GFN---VFASVSGD---CSVRVFDLRDKE-RSTI  202 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~---~l~~~~~d---~~i~i~d~~~~~-~~~~  202 (339)
                      ...+|+....++-+.+||+. |+.++.+.  .+.++.+..-     .+.   ++++..++   ..|++|.+.... ....
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            45688888899999999995 55566653  2333333322     232   33344333   469999776322 1221


Q ss_pred             EEeC----CCCCCCeEEEEE--ecCCCCe-EEEEeeCCCeEEEEecCCC--C----CceEEEecCCCCeeEEEeccCCCC
Q 040307          203 IYEN----PVQDCPLLRLEW--NKADPRF-MATVGMDSNKVVVLDIRFP--T----NPVVVLSKHEGSVNGISWAPLYGR  269 (339)
Q Consensus       203 ~~~~----~~~~~~v~~~~~--~p~~~~~-l~~~~~d~~~i~i~d~~~~--~----~~~~~~~~~~~~v~~~~~~p~~~~  269 (339)
                      +...    ......+..+++  +|.++.+ .++...+|. +.-|.+...  +    ++++++.. ...+-.|...... .
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~-~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~-g  220 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGR-VEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET-G  220 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSE-EEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCce-EEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc-C
Confidence            1110    001134666776  4445654 444555665 777766421  2    24566665 4478888888887 4


Q ss_pred             eEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee--e---cccceeEEEEecC--CCC-ceEEEe-cCCeEEEEe
Q 040307          270 RLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC--Y---QSMAEINVVRWSP--LEL-DWIAIA-FVNKLQLLK  338 (339)
Q Consensus       270 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~i~~~~~~p--~~~-~l~~~~-~d~~v~~w~  338 (339)
                      .|..+-++--|.-|+.+...          ...+..+  .   .....|..|+.-.  ++. ||++++ .+++..+|+
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~----------~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEG----------GNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-----------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             CEEEecCccEEEEEecCCCC----------CCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            88899888666556555433          1112222  1   1345677777643  443 566665 677888886

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.20  E-value=9.6  Score=35.27  Aligned_cols=174  Identities=13%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC-CCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE-TLNP   88 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~   88 (339)
                      ...+....+.|-.+.|.++   ++.+.+..    .+|.|++|+++....+...  .....+...+..=.|-++.+ ..+.
T Consensus       122 ~~~~~kl~~kvv~Ik~~~~---~~~I~vvl----~nG~i~~~d~~~~~l~~~~--~l~~~~~~~v~ys~fv~~~~~~~~~  192 (670)
T PF10395_consen  122 NEFELKLDDKVVGIKFSSD---GKIIYVVL----ENGSIQIYDFSENSLEKVP--QLKLKSSINVSYSKFVNDFELENGK  192 (670)
T ss_pred             ceEEEEcccceEEEEEecC---CCEEEEEE----cCCcEEEEecccccccccc--ccccccccceehhhhhcccccccCC
Confidence            3445556889999999988   88888877    7999999998444433322  22223333221113433321 0001


Q ss_pred             CeE-EEeC---C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307           89 DIV-ATSG---D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL  162 (339)
Q Consensus        89 ~~l-a~~~---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  162 (339)
                      .++ ..+.   +  ..+++.+.... .....+.....+.+...=..+++.  .|.+..-  .+++|.+|++...+...++
T Consensus       193 ~~ll~v~~~~~~k~~ykL~~l~~~~-~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~~~tI  267 (670)
T PF10395_consen  193 DLLLTVSQLSNSKLSYKLISLSNES-SSIFELSSTILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQIQKTI  267 (670)
T ss_pred             ceEEEEEEcCCCcEEEEEEEeccCC-cceEEeehheeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceEEEEE
Confidence            333 3332   2  78888882221 122222211100010111233443  4554443  6789999999887755555


Q ss_pred             ecc-----C-CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc
Q 040307          163 VAH-----D-REVYDISWG-GFNVFASVSGDCSVRVFDLRDKER  199 (339)
Q Consensus       163 ~~~-----~-~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~  199 (339)
                      .-.     . ..+.++.-- +++.|++.  +..|++.|+.-...
T Consensus       268 ~l~~ii~~~~~~~vSl~~~s~nRvLLs~--~nkIyLld~~~~si  309 (670)
T PF10395_consen  268 SLPSIIDKESDDLVSLKPPSPNRVLLSV--NNKIYLLDLKFESI  309 (670)
T ss_pred             EechhhccccccceEeecCCCCeEEEEc--CCEEEEEeehhhhh
Confidence            311     1 233343333 45555543  57899999876543

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.20  E-value=2  Score=37.88  Aligned_cols=82  Identities=11%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC--CCCCCC------CcccceeeecccceeEEEEecCCC---Cce
Q 040307          257 SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS--GNGGPS------GDVEPELCYQSMAEINVVRWSPLE---LDW  325 (339)
Q Consensus       257 ~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~i~~~~~~p~~---~~l  325 (339)
                      .|..+..++.|+ .++-.+.+|.+.++=.+...+..  +++.+.      +....+......-.+..++|+|+.   ..+
T Consensus       105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            578889999995 77777778876655433322100  011000      000001111123357889999985   568


Q ss_pred             EEEecCCeEEEEeC
Q 040307          326 IAIAFVNKLQLLKV  339 (339)
Q Consensus       326 ~~~~~d~~v~~w~v  339 (339)
                      +.-..|+.+|+|++
T Consensus       184 ~iL~sdnviRiy~l  197 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSL  197 (741)
T ss_pred             EEEecCcEEEEEec
Confidence            88899999999974

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.97  E-value=11  Score=35.61  Aligned_cols=70  Identities=10%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC----------Ce---eeeee--------eccCCceeEEEecC----Cc
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDR----------EI---LETQL--------VAHDREVYDISWGG----FN  178 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~----------~~---~~~~~--------~~~~~~v~~~~~~~----~~  178 (339)
                      -.|..+..+| +|.+++..|..|.+ |-.+..          ++   ..+++        ......|..+.|+|    +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3688899998 99999988875544 333321          11   01111        12234566677763    45


Q ss_pred             EEEEEeCCCcEEEEECC
Q 040307          179 VFASVSGDCSVRVFDLR  195 (339)
Q Consensus       179 ~l~~~~~d~~i~i~d~~  195 (339)
                      .|+.-..|+.+|+||+.
T Consensus       163 ~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             eEEEEecCCEEEEEecC
Confidence            66666667777777764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.82  E-value=7.1  Score=32.95  Aligned_cols=90  Identities=3%  Similarity=-0.083  Sum_probs=48.3

Q ss_pred             CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC----eEEEEECCCCe
Q 040307           89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT----TCVIWDIDREI  157 (339)
Q Consensus        89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~----~v~i~d~~~~~  157 (339)
                      ++++.|+.       .+..||+.+.++..+..+....     ..-..++.  .++++.+.|+.++    .+.+||+++.+
T Consensus       125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-----r~~~~~~~--~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-----RVQPVCVK--LQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-----CCcceEEE--ECCEEEEEcCCCCccccceEEEecCCCe
Confidence            67777651       6888898888765554333211     11112222  2667888887664    35688887764


Q ss_pred             eeeeeecc-----CC---ceeEEEecCCcEEEEEeCC
Q 040307          158 LETQLVAH-----DR---EVYDISWGGFNVFASVSGD  186 (339)
Q Consensus       158 ~~~~~~~~-----~~---~v~~~~~~~~~~l~~~~~d  186 (339)
                      - ..+...     ..   ....+...++.+++.|+.+
T Consensus       198 W-~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       198 W-QKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             e-EECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            2 122110     00   1122333367788888866

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.72  E-value=13  Score=35.77  Aligned_cols=101  Identities=20%  Similarity=0.171  Sum_probs=64.9

Q ss_pred             CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC----CceEEEecCC----------CCeeEEEeccCCCCeEEEE
Q 040307          209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT----NPVVVLSKHE----------GSVNGISWAPLYGRRLCSV  274 (339)
Q Consensus       209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~----~~~~~~~~~~----------~~v~~~~~~p~~~~~l~~~  274 (339)
                      ...+...++|+|.+...||+....|. ..|||+....    ..+.....+.          .....|.|.++.. .|+.+
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~  221 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVC  221 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCc-EEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEE
Confidence            34577899999988899999999999 9999992111    1111111111          2234788988873 66666


Q ss_pred             eCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307          275 ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       275 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~  322 (339)
                      + ...+.++|++...          ..+.+........|.++.-+|..
T Consensus       222 ~-r~~l~~~d~~~~~----------~~~~l~~~~~~~~IlDv~~~~~~  258 (765)
T PF10214_consen  222 N-RSKLMLIDFESNW----------QTEYLVTAKTWSWILDVKRSPDN  258 (765)
T ss_pred             c-CCceEEEECCCCC----------ccchhccCCChhheeeEEecCCc
Confidence            5 3578999999876          11112223345567777777763

These proteins are found in fungi.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.65  E-value=2  Score=32.42  Aligned_cols=31  Identities=10%  Similarity=0.300  Sum_probs=24.9

Q ss_pred             CceeEEEecC-------CcEEEEEeCCCcEEEEECCCC
Q 040307          167 REVYDISWGG-------FNVFASVSGDCSVRVFDLRDK  197 (339)
Q Consensus       167 ~~v~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~  197 (339)
                      ..+..++|+|       +-+|++...++.|.+|.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            3789999994       347888899999999986643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.36  E-value=1.4  Score=38.15  Aligned_cols=158  Identities=10%  Similarity=0.114  Sum_probs=88.4

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEE-EEEEcCCCCCEEEEEeCCCeEE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAIT-SFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      ..|..+-..|++     +.+..-++ ++.++++.+...+..+.......+ -...|+ .+..-. .+..++.++.||-|.
T Consensus       221 ~~v~qllL~Pdg-----~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~-~~~~Vte~l~lL~-Gg~SLLv~~~dG~vs  293 (733)
T COG4590         221 SDVSQLLLTPDG-----KTLYVRTGSELVVALLDKRSLQIRKLVDDSPGD-SRHQVTEQLYLLS-GGFSLLVVHEDGLVS  293 (733)
T ss_pred             cchHhhEECCCC-----CEEEEecCCeEEEEeecccccchhhhhhcCCCc-hHHHHHHHHHHHh-CceeEEEEcCCCcee
Confidence            456677788999     66666554 888888877653222222111100 001222 222222 567788899999998


Q ss_pred             EE-ECCCCe-----eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          150 IW-DIDREI-----LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       150 i~-d~~~~~-----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      -| |.+.+.     .++.++-...++..+.-. +.+-+++-+..|++.++.....+..  +++.  --..+.-++++| .
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l--L~~~--~~~~~~~~~~Sp-~  368 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL--LFER--AYQAPQLVAMSP-N  368 (733)
T ss_pred             eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce--ehhh--hhcCcceeeeCc-c
Confidence            87 444332     222222222333333322 3566778888898888876554422  2221  112556789998 7


Q ss_pred             CCeEEEEeeCCCeEEEEecCC
Q 040307          223 PRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      +.++++  ++++.++++.+.+
T Consensus       369 ~~~Ll~--e~~gki~~~~l~N  387 (733)
T COG4590         369 QAYLLS--EDQGKIRLAQLEN  387 (733)
T ss_pred             cchhee--ecCCceEEEEecC
Confidence            777765  3333399998876

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.15  E-value=6.5  Score=38.88  Aligned_cols=143  Identities=8%  Similarity=0.137  Sum_probs=86.9

Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C--C------cEEEEEeCCCcEEEEECCCCccee------eEEeCC
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-G--F------NVFASVSGDCSVRVFDLRDKERST------IIYENP  207 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~--~------~~l~~~~~d~~i~i~d~~~~~~~~------~~~~~~  207 (339)
                      +.|+.+.+|+.+++.....+.+.+..|..+..- |  |      ++++..+.--.|.++-+...+...      ..+..+
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            458899999999977777777777777777665 3  2      233333334455555433221110      011111


Q ss_pred             CCCCCeEEEEEecCCCCeEEEEeeCCCeEEE--EecCCCC-------------------CceEEEe-cCCCCeeEEEecc
Q 040307          208 VQDCPLLRLEWNKADPRFMATVGMDSNKVVV--LDIRFPT-------------------NPVVVLS-KHEGSVNGISWAP  265 (339)
Q Consensus       208 ~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i--~d~~~~~-------------------~~~~~~~-~~~~~v~~~~~~p  265 (339)
                      .....|.++... .+|+++++|-.+ . ++=  |....+.                   ..+..+. .+..+|..++...
T Consensus       176 ~dg~~V~~I~~t-~nGRIF~~G~dg-~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYT-ENGRIFFAGRDG-N-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEec-cCCcEEEeecCC-C-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            234578888855 588877765544 4 432  2221110                   0112223 5567899999987


Q ss_pred             CCCCeEEEEeCCCcEEEEEecCCC
Q 040307          266 LYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       266 ~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .- .++.+-++.|.|.+|++....
T Consensus       253 SR-~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  253 SR-NILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             cc-ceeeeeccCceEEEEEccCCC
Confidence            76 699999999999999999854

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.98  E-value=7.9  Score=31.88  Aligned_cols=98  Identities=12%  Similarity=0.187  Sum_probs=57.9

Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe------CCCcEEEEECCCCcceeeEEeC-CCCCCCeEEEE
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVS------GDCSVRVFDLRDKERSTIIYEN-PVQDCPLLRLE  217 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~  217 (339)
                      ..|++||..+.+-...-.+-.+.|+++.|. +.++++.|.      ....+..||+.+..-...-... ..-.+++..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            468999987765333333456789999998 566666654      3556888998887632221101 11236788887


Q ss_pred             EecCCCC-eEEEEe-eCCC-eEEEEecCC
Q 040307          218 WNKADPR-FMATVG-MDSN-KVVVLDIRF  243 (339)
Q Consensus       218 ~~p~~~~-~l~~~~-~d~~-~i~i~d~~~  243 (339)
                      +...++. +.+.|. .++. .|..||-.+
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCc
Confidence            7544554 444443 2222 377776544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.79  E-value=9.1  Score=32.30  Aligned_cols=64  Identities=5%  Similarity=-0.022  Sum_probs=36.0

Q ss_pred             CCCEEEEEeC-----CCeEEEEECCCCee--eeeeeccCCceeEEEecCCcEEEEEeCCCc----EEEEECCCCc
Q 040307          135 DTRRVATCSV-----DTTCVIWDIDREIL--ETQLVAHDREVYDISWGGFNVFASVSGDCS----VRVFDLRDKE  198 (339)
Q Consensus       135 ~~~~l~~~~~-----d~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~----i~i~d~~~~~  198 (339)
                      ++++.+.|+.     ...+..||+.+.+=  +..+......-..++..++.+++.|+.++.    +..||+.+.+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            5677777774     24688889876641  111211111111222226778888877643    5688888765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.44  E-value=2.4  Score=32.07  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=26.6

Q ss_pred             CeeEEEeccCC-----CCeEEEEeCCCcEEEEEecCC
Q 040307          257 SVNGISWAPLY-----GRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       257 ~v~~~~~~p~~-----~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      .+.+++|||.|     .-+|++.+.++.|.||.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            78899999954     358999999999999987753

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.17  E-value=0.24  Score=46.20  Aligned_cols=140  Identities=10%  Similarity=0.073  Sum_probs=79.9

Q ss_pred             CCCeEEEEECCCCe-eeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCC--Ccceee--EEeCCCCCCCeEEE
Q 040307          144 VDTTCVIWDIDREI-LETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRD--KERSTI--IYENPVQDCPLLRL  216 (339)
Q Consensus       144 ~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~--~~~~~~--~~~~~~~~~~v~~~  216 (339)
                      ..+.+++-+....- .-..+++..+.+-.++|-  +...+.  -.-|.+.+||+.-  ++....  +.........+.-+
T Consensus       109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV  186 (1283)
T ss_pred             hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence            34666766654332 112346677888888886  322222  2346788998763  221111  11111123455677


Q ss_pred             EEecC--CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE-----------EeccCCCCeEEEEeCCCcEEEE
Q 040307          217 EWNKA--DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI-----------SWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       217 ~~~p~--~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-----------~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      .|.|.  +.-++..+-.++. +++.......  ...+.+|..++..+           ..|||| +.+++++.||.+++|
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGE-IRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY  262 (1283)
T ss_pred             eecccccccceeeeccCCCc-eeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence            77763  3344544444555 7776655322  23344566554443           368999 699999999999999


Q ss_pred             EecCCC
Q 040307          284 EVVGPG  289 (339)
Q Consensus       284 d~~~~~  289 (339)
                      .+.-..
T Consensus       263 Qiyi~g  268 (1283)
T KOG1916|consen  263 QIYITG  268 (1283)
T ss_pred             eeeeec
Confidence            887655

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.16  E-value=1.8  Score=34.09  Aligned_cols=65  Identities=5%  Similarity=0.048  Sum_probs=46.4

Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEE------Ee-------cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVV------LS-------KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      .+++|++-+.+|. +++||+.+....+..      +.       .....|..+.++.+| .-+++-+ +|..+.|+....
T Consensus        21 ~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccccc
Confidence            6788999999998 999999874322211      11       345678899999888 4666554 578888887665


Q ss_pred             C
Q 040307          289 G  289 (339)
Q Consensus       289 ~  289 (339)
                      .
T Consensus        98 ~   98 (219)
T PF07569_consen   98 C   98 (219)
T ss_pred             e
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.86  E-value=12  Score=32.03  Aligned_cols=41  Identities=7%  Similarity=-0.110  Sum_probs=20.7

Q ss_pred             CeEEEEECCCCe--eeeeeeccCCceeEEEecCCcEEEEEeCC
Q 040307          146 TTCVIWDIDREI--LETQLVAHDREVYDISWGGFNVFASVSGD  186 (339)
Q Consensus       146 ~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d  186 (339)
                      ..+.+||..+.+  .+..+......-.+++..++.+++.|+.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence            468889987764  11122110111123333367777877753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.79  E-value=14  Score=32.87  Aligned_cols=138  Identities=9%  Similarity=0.101  Sum_probs=79.1

Q ss_pred             CeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCCCe-e
Q 040307           89 DIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF------DTRRVATCSVDTTCVIWDIDREI-L  158 (339)
Q Consensus        89 ~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~~~d~~v~i~d~~~~~-~  158 (339)
                      .++..-++   .++-.|++.++  .+.....|.      .+ -+.|.|.      ....-+.|-.+..|.-.|.+-.. .
T Consensus       480 sli~~dg~~~~kLykmDIErGk--vveeW~~~d------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK  550 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGK--VVEEWDLKD------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK  550 (776)
T ss_pred             ceEEecCCCcccceeeecccce--eeeEeecCC------cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence            55555443   67777777776  666666654      33 5667662      11223344455666666765432 1


Q ss_pred             eeeeeccCCceeEEEec-----CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          159 ETQLVAHDREVYDISWG-----GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       159 ~~~~~~~~~~v~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      +... .....++.=.|+     .+.+++.++..|-|++||--.......+.   .-...|..+.... +|.++++.+..-
T Consensus       551 i~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP---~lG~aIk~idvta-~Gk~ilaTCk~y  625 (776)
T COG5167         551 IKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP---GLGDAIKHIDVTA-NGKHILATCKNY  625 (776)
T ss_pred             eeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc---ccccceeeeEeec-CCcEEEEeecce
Confidence            2111 122223323333     47799999999999999954443222222   1345788888886 777776655442


Q ss_pred             CeEEEEecC
Q 040307          234 NKVVVLDIR  242 (339)
Q Consensus       234 ~~i~i~d~~  242 (339)
                        +.+-|++
T Consensus       626 --llL~d~~  632 (776)
T COG5167         626 --LLLTDVP  632 (776)
T ss_pred             --EEEEecc
Confidence              7777775

>PLN02153 epithiospecifier protein

Probab=89.53  E-value=12  Score=31.84  Aligned_cols=136  Identities=10%  Similarity=0.054  Sum_probs=66.0

Q ss_pred             CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------CeEEE
Q 040307           89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----------TTCVI  150 (339)
Q Consensus        89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------~~v~i  150 (339)
                      ++++.|+.       .+.+||+.+.++..+..+...... ....-.+++..  ++++++.|+.+           ..|.+
T Consensus        87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p-~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP-EARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC-CCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence            67777761       678889888765544333110000 00111223332  56777777754           25778


Q ss_pred             EECCCCeeeeeeecc-----CCceeEEEecCCcEEEEEeCC-------------CcEEEEECCCCcceeeEEe--CCCCC
Q 040307          151 WDIDREILETQLVAH-----DREVYDISWGGFNVFASVSGD-------------CSVRVFDLRDKERSTIIYE--NPVQD  210 (339)
Q Consensus       151 ~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~--~~~~~  210 (339)
                      ||.++.+ ...+...     ...-.+++..++++++.++.+             ..+.+||+.+.+-......  .+...
T Consensus       164 yd~~~~~-W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r  242 (341)
T PLN02153        164 YNIADGK-WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR  242 (341)
T ss_pred             EECCCCe-EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence            8987664 2122111     111112232356666665532             4588899887763322111  11111


Q ss_pred             CCeEEEEEecCCCCeEEEEee
Q 040307          211 CPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~  231 (339)
                       ...+++..  ++++++.|+.
T Consensus       243 -~~~~~~~~--~~~iyv~GG~  260 (341)
T PLN02153        243 -SVFAHAVV--GKYIIIFGGE  260 (341)
T ss_pred             -ceeeeEEE--CCEEEEECcc
Confidence             12222222  5677777775

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.33  E-value=9.3  Score=30.20  Aligned_cols=172  Identities=9%  Similarity=0.078  Sum_probs=87.9

Q ss_pred             CeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCC
Q 040307           89 DIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------TTCVIWDIDRE  156 (339)
Q Consensus        89 ~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~  156 (339)
                      +.++.+.+   .|--||..........++..-.........+.-..+| ++++++-.-.|         |.++.|-... 
T Consensus        71 q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-  148 (310)
T KOG4499|consen   71 QEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGH-  148 (310)
T ss_pred             ceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCC-
Confidence            45555443   5555664333222333322111111124556667787 88884432222         3334443311 


Q ss_pred             eeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEE--CCCCcc--eeeEEeC----CCCCCCeEEEEEecCCCCeE
Q 040307          157 ILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFD--LRDKER--STIIYEN----PVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d--~~~~~~--~~~~~~~----~~~~~~v~~~~~~p~~~~~l  226 (339)
                       .+..+...-.--+.++|+ +.+ +..+-+.+-.|.-||  ..++..  +..++..    +......-.++... +|++.
T Consensus       149 -~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~  226 (310)
T KOG4499|consen  149 -QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLY  226 (310)
T ss_pred             -CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEE
Confidence             111222222233567888 543 445556667776677  444331  1111111    00111223345553 66666


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccC
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL  266 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~  266 (339)
                      ++.-..++ |.-.|..+ ++.+.++.-....|++++|--.
T Consensus       227 Va~~ng~~-V~~~dp~t-GK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  227 VATFNGGT-VQKVDPTT-GKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEecCcE-EEEECCCC-CcEEEEEEcCCCceEEEEecCC
Confidence            66555555 99999988 7778888888889999999743

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.99  E-value=14  Score=31.94  Aligned_cols=39  Identities=5%  Similarity=-0.031  Sum_probs=19.8

Q ss_pred             eEEEEECCCCeee--eeeeccCCceeEEEecCCcEEEEEeC
Q 040307          147 TCVIWDIDREILE--TQLVAHDREVYDISWGGFNVFASVSG  185 (339)
Q Consensus       147 ~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~  185 (339)
                      .+.+||..+.+-.  ..+......-.++...++.+++.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence            5888998776521  11111111122344446777777764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.87  E-value=3  Score=32.94  Aligned_cols=70  Identities=10%  Similarity=0.058  Sum_probs=43.4

Q ss_pred             eccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee------cccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          263 WAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY------QSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      +...+ .+|++.+.+|.+++||+...+. ..   +...+.|+...      .....|..+....+|.-+|+- .+|....
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~-~~---~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~   91 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKA-VL---PPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYS   91 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCee-cc---CCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEE
Confidence            34456 5899999999999999999771 00   00011122211      355678899998888645543 3455666


Q ss_pred             Ee
Q 040307          337 LK  338 (339)
Q Consensus       337 w~  338 (339)
                      |+
T Consensus        92 y~   93 (219)
T PF07569_consen   92 YS   93 (219)
T ss_pred             ec
Confidence            64

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.80  E-value=8.1  Score=36.24  Aligned_cols=96  Identities=11%  Similarity=0.251  Sum_probs=54.4

Q ss_pred             EEEEcCCCCCEEEEEeCCC-----eEEEEECC---CCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307          128 SFDWAGFDTRRVATCSVDT-----TCVIWDID---REILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE  198 (339)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~-----~v~i~d~~---~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~  198 (339)
                      .+.|-| .|..+++-+.||     .|..+..+   .|+.-... +....+..++|+ ....++. ...+.+.+|-..+-.
T Consensus       251 ~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh  327 (1243)
T COG5290         251 QLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH  327 (1243)
T ss_pred             cccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence            478998 899999877554     35555432   23221111 234456777887 4444443 345679999877654


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                      --.. .+.  .-..+.-+.|+|...+.++..
T Consensus       328 WYLK-~e~--~ip~~s~vkwhpe~~nTl~f~  355 (1243)
T COG5290         328 WYLK-VER--QIPGISYVKWHPEEKNTLLFR  355 (1243)
T ss_pred             EEEE-Eee--cCCCcceeeeccccCcEEEEe
Confidence            2111 111  223566788988655555543

>PLN02193 nitrile-specifier protein

Probab=88.40  E-value=18  Score=32.44  Aligned_cols=104  Identities=12%  Similarity=0.060  Sum_probs=55.2

Q ss_pred             CeEEEeC-C------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCC
Q 040307           89 DIVATSG-D------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDRE  156 (339)
Q Consensus        89 ~~la~~~-~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~  156 (339)
                      .+++.|+ +      .+..||+.+.++..+..+......   ..-.++...  ++++++.|+.++     .+..||+.+.
T Consensus       230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~---R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~  304 (470)
T PLN02193        230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP---RSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDK  304 (470)
T ss_pred             EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC---ccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCC
Confidence            6777765 1      678888888775554433110000   111122222  567777777643     4677888765


Q ss_pred             eeeeeeec-----cCCceeEEEecCCcEEEEEeCC----CcEEEEECCCCc
Q 040307          157 ILETQLVA-----HDREVYDISWGGFNVFASVSGD----CSVRVFDLRDKE  198 (339)
Q Consensus       157 ~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~  198 (339)
                      +-. .+..     ....-..+...++.+++.++.+    ..+.+||+.+.+
T Consensus       305 ~W~-~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        305 KWF-HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EEE-eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence            421 1111     0001112222356777777755    458899998876

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.64  E-value=4.7  Score=35.05  Aligned_cols=160  Identities=13%  Similarity=0.034  Sum_probs=87.9

Q ss_pred             eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-E-eCCCC-CCCeE-EEEEecCCCCeEEEEeeCCCeE
Q 040307          162 LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-Y-ENPVQ-DCPLL-RLEWNKADPRFMATVGMDSNKV  236 (339)
Q Consensus       162 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~-~~~~~-~~~v~-~~~~~p~~~~~l~~~~~d~~~i  236 (339)
                      +......+..+-.. +++.+..-+. ..+.++++.+....... . ..++. ...|+ .+..- ..+.-+++++.||. |
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~-v  292 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL-V  292 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc-e
Confidence            33334456666666 5776666554 67888888766522221 1 11110 01121 11212 26777888999998 6


Q ss_pred             EEE-ecCCCCCceEEE----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307          237 VVL-DIRFPTNPVVVL----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA  311 (339)
Q Consensus       237 ~i~-d~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (339)
                      .-| |++....+-...    +-...++.-+.-. +..+-+++-..+|++.++.....+             ++.......
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~-------------~lL~~~~~~  358 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEK-------------LLLFERAYQ  358 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCc-------------ceehhhhhc
Confidence            555 777655432211    1111223222211 223567777888888888766655             444444444


Q ss_pred             eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          312 EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .+.-+++||.+.+++ .-..|.++++++
T Consensus       359 ~~~~~~~Sp~~~~Ll-~e~~gki~~~~l  385 (733)
T COG4590         359 APQLVAMSPNQAYLL-SEDQGKIRLAQL  385 (733)
T ss_pred             CcceeeeCcccchhe-eecCCceEEEEe
Confidence            677899999987554 344566776653

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=87.41  E-value=33  Score=34.16  Aligned_cols=141  Identities=11%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             cEEEEeecC-----CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           97 SLRLWEIHD-----DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        97 ~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      .+.|+|+-.     +++.....++.-..++..++|..++=-  +|. |+++ ...+|.+|+++....+.-..--.-++.-
T Consensus      1066 r~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G~-l~~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv 1141 (1366)
T KOG1896|consen 1066 RIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RGH-LLSS-QGQKIIVRKLDRDSELIGVAFIDLPLYV 1141 (1366)
T ss_pred             cEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--ccE-EEEc-cCcEEEEEEeccCCcceeeEEeccceeE
Confidence            789998754     211111112111122223778777643  454 4443 3468999999433222111111112222


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC-eEEEEeeCCCeEEEEecC
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR-FMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~d~~~i~i~d~~  242 (339)
                      .+.. =.++|+.|.--..|.+.-.........+.......-.+.++.|--++++ .++++..+++ |++|-..
T Consensus      1142 ~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN-i~vy~Y~ 1213 (1366)
T KOG1896|consen 1142 HSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN-IHVYMYA 1213 (1366)
T ss_pred             EehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc-EEEEEeC
Confidence            2222 2677888877777877766655433344443344567888888763333 5667777787 8887543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.39  E-value=15  Score=30.28  Aligned_cols=92  Identities=12%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe------CCCeEEEEECCCCeeeeeeec-----c
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS------VDTTCVIWDIDREILETQLVA-----H  165 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------~d~~v~i~d~~~~~~~~~~~~-----~  165 (339)
                      .|++||..+.++....  .+-.     +.|++|.|.. +.++++.|.      ....+..||..+.. ...+..     -
T Consensus        17 ~lC~yd~~~~qW~~~g--~~i~-----G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~i   87 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPG--NGIS-----GTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSI   87 (281)
T ss_pred             EEEEEECCCCEeecCC--CCce-----EEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccC
Confidence            8999999888643222  1222     7899999984 666666664      35578889987664 323332     2


Q ss_pred             CCceeEEEec--CC-cEEEEEe-CCC--cEEEEECCCC
Q 040307          166 DREVYDISWG--GF-NVFASVS-GDC--SVRVFDLRDK  197 (339)
Q Consensus       166 ~~~v~~~~~~--~~-~~l~~~~-~d~--~i~i~d~~~~  197 (339)
                      .++|..+.+.  +. ++.+.|. .++  .|..||-.+.
T Consensus        88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W  125 (281)
T PF12768_consen   88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW  125 (281)
T ss_pred             CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence            3678888885  43 4444443 233  4555654443

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.24  E-value=10  Score=35.62  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             EEeeecCCcccEEEEeeecc-ccCCeEEEEecCCCC---CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-c
Q 040307           23 VAWSVRHDRKSRLAVGSFLE-DYSNKIELVNFNPET---SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-S   97 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~-~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~   97 (339)
                      ++|-|.   |..+|+-...+ +..-.|+.  +...+   +++..    ..+....+..++|+-..     .++|.+.+ .
T Consensus       252 LSWkpq---gS~~ati~td~~~~S~~ViF--fErNGLrHGef~l----r~~~dEk~~~~~wn~~s-----~vlav~~~n~  317 (1243)
T COG5290         252 LSWKPQ---GSKYATIGTDGCSTSESVIF--FERNGLRHGEFDL----RVGCDEKAFLENWNLLS-----TVLAVAEGNL  317 (1243)
T ss_pred             cccccC---CceeeeeccCCCCCcceEEE--EccCCcccCCccc----cCCchhhhhhhhhhHHH-----HHHHHhhcce
Confidence            789999   99888865211 11223444  44333   22221    24556677888998887     78888776 9


Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      +++|-..+-.+-.......       ..+.-+.|+|...+.++..+.
T Consensus       318 ~~lwttkNyhWYLK~e~~i-------p~~s~vkwhpe~~nTl~f~d~  357 (1243)
T COG5290         318 LKLWTTKNYHWYLKVERQI-------PGISYVKWHPEEKNTLLFRDG  357 (1243)
T ss_pred             EEEEEccceEEEEEEeecC-------CCcceeeeccccCcEEEEecC
Confidence            9999988776555555444       457788999855555554443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.64  E-value=19  Score=30.71  Aligned_cols=91  Identities=5%  Similarity=-0.039  Sum_probs=43.6

Q ss_pred             CeEEEeCC---cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------CeEEEEE
Q 040307           89 DIVATSGD---SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----------TTCVIWD  152 (339)
Q Consensus        89 ~~la~~~~---~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------~~v~i~d  152 (339)
                      ++++.|+.   .+..+|++.  .++..+..+....  .  ... +++..  ++++.+.|+.+           ..+..||
T Consensus        19 ~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~--R--~~~-~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd   91 (346)
T TIGR03547        19 KVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGP--R--NQA-VAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYD   91 (346)
T ss_pred             EEEEEccccCCeeEEEECCCCCCCceECCCCCCCC--c--ccc-eEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEE
Confidence            56676662   666777632  3333333332111  0  111 22222  67788888753           2477788


Q ss_pred             CCCCeeeeeeeccCC---ceeEEEecCCcEEEEEeCC
Q 040307          153 IDREILETQLVAHDR---EVYDISWGGFNVFASVSGD  186 (339)
Q Consensus       153 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~~~~~d  186 (339)
                      ..+.+=...-.....   ....+...++.+.+.|+.+
T Consensus        92 ~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        92 PKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            876542111101111   1111223368888888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.14  E-value=2.7  Score=22.60  Aligned_cols=25  Identities=4%  Similarity=-0.001  Sum_probs=17.5

Q ss_pred             cCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          265 PLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       265 p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |++..++++...++.|.++|..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~   25 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK   25 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe
Confidence            5664455555578899999987665

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.63  E-value=27  Score=30.58  Aligned_cols=109  Identities=6%  Similarity=-0.033  Sum_probs=61.3

Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-----ceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-----PVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALI  282 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-----~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~i  282 (339)
                      ...+..+.|.+ ++.+++++ ..|. + ++.... +.     ........  ...+.++.|.+++  .++.++..|.+..
T Consensus       280 ~~~l~~v~~~~-dg~l~l~g-~~G~-l-~~S~d~-G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~  352 (398)
T PLN00033        280 ARRIQNMGWRA-DGGLWLLT-RGGG-L-YVSKGT-GLTEEDFDFEEADIKSRGFGILDVGYRSKK--EAWAAGGSGILLR  352 (398)
T ss_pred             ccceeeeeEcC-CCCEEEEe-CCce-E-EEecCC-CCcccccceeecccCCCCcceEEEEEcCCC--cEEEEECCCcEEE
Confidence            35688999986 77777654 4554 3 333222 22     12222221  2358899999887  3455556676655


Q ss_pred             EEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          283 WEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      .. ..++          ...... ...-....+.+.|.++++ .++.+.+|.|.-|
T Consensus       353 s~-D~G~----------tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~  396 (398)
T PLN00033        353 ST-DGGK----------SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY  396 (398)
T ss_pred             eC-CCCc----------ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence            42 3333          011111 112245688999988765 6777888876554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.54  E-value=46  Score=33.19  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=27.6

Q ss_pred             eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEe
Q 040307           12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVN   52 (339)
Q Consensus        12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~   52 (339)
                      .++..+.....++|.|.   ..++|.|+    ..|.|++|.
T Consensus        30 ~~~G~~~~~~~~afD~~---q~llai~t----~tg~i~~yg   63 (993)
T KOG1983|consen   30 NRHGFPSTPSALAFDPT---QGLLAIGT----RTGAIKIYG   63 (993)
T ss_pred             eecCCCCCCcceeeccc---cceEEEEE----ecccEEEec
Confidence            34445567788999999   99999999    799999943

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.32  E-value=26  Score=30.24  Aligned_cols=152  Identities=12%  Similarity=0.072  Sum_probs=83.3

Q ss_pred             cEEEEeecCCcceeEEEeecCC---CccCCCCEEEEEE--cCCCCC-EEEEEeCCCeEEEEECC---CC----eeeeeee
Q 040307           97 SLRLWEIHDDRTELKSLLNSNK---TSEFSSAITSFDW--AGFDTR-RVATCSVDTTCVIWDID---RE----ILETQLV  163 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~--~~~~~~-~l~~~~~d~~v~i~d~~---~~----~~~~~~~  163 (339)
                      +|++|.++.... .+..+....   .... ..+..++.  +|.++. +.+....+|.+..|.+.   .+    +.++.+.
T Consensus       128 ~l~~f~id~~~g-~L~~v~~~~~p~~~~~-~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  128 SLRLFRIDPDTG-ELTDVTDPAAPIATDL-SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             EEEEEEEETTTT-EEEE-CBTTC-EE-SS-SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             eEEEEEecCCCC-cceEcCCCCccccccc-ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            699999875321 222222110   0011 35677776  443444 56667888998888774   22    3566665


Q ss_pred             ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc--ceeeEE--eCCCCCCCeEEEEEec--CCCCeEEEEeeCCCeE
Q 040307          164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE--RSTIIY--ENPVQDCPLLRLEWNK--ADPRFMATVGMDSNKV  236 (339)
Q Consensus       164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~--~~~~~~~~v~~~~~~p--~~~~~l~~~~~d~~~i  236 (339)
                      . ...+..+... ....|..+-.+.-|.-|+..-..  ....+.  ....-...+-.++.-.  ....||++++......
T Consensus       206 ~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  206 V-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             --SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             C-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            3 4577888887 56788888888888888876332  222221  1222335677777753  2234666666555459


Q ss_pred             EEEecCCCCCceEEE
Q 040307          237 VVLDIRFPTNPVVVL  251 (339)
Q Consensus       237 ~i~d~~~~~~~~~~~  251 (339)
                      .||+.+.....+..+
T Consensus       285 ~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  285 AVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEESSTT--EEEEE
T ss_pred             EEEecCCCCcccceE
Confidence            999987644444444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=83.69  E-value=50  Score=32.98  Aligned_cols=145  Identities=12%  Similarity=0.061  Sum_probs=85.7

Q ss_pred             CEEEEEeC---------CCeEEEEECCC-----Ce-----eeeee--eccCCceeEEEecCCcEEEEEeCCCcEEEEEC-
Q 040307          137 RRVATCSV---------DTTCVIWDIDR-----EI-----LETQL--VAHDREVYDISWGGFNVFASVSGDCSVRVFDL-  194 (339)
Q Consensus       137 ~~l~~~~~---------d~~v~i~d~~~-----~~-----~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~-  194 (339)
                      .+|++|..         -|.++|+|+-.     ++     .++.+  +..+++|..++=..|.++. + ....|.+|++ 
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~-~-~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLS-S-QGQKIIVRKLD 1124 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEE-c-cCcEEEEEEec
Confidence            47777753         47899998732     22     12222  2456777777655565444 3 3457999999 


Q ss_pred             CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--CCCCeeEEEeccCCC-CeE
Q 040307          195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--HEGSVNGISWAPLYG-RRL  271 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~p~~~-~~l  271 (339)
                      +.......-+..    .++.-..... -+++|+.|.--.+ |.+.-.......+..+..  ..-.++++.|--+|+ ..+
T Consensus      1125 r~~~ligVaFiD----~~~yv~s~~~-vknlIl~gDV~ks-isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~f 1198 (1366)
T KOG1896|consen 1125 RDSELIGVAFID----LPLYVHSMKV-VKNLILAGDVMKS-ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSF 1198 (1366)
T ss_pred             cCCcceeeEEec----cceeEEehhh-hhhheehhhhhhc-eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEE
Confidence            554433333321    2333333332 4577777777777 887776542222222221  123678888887764 357


Q ss_pred             EEEeCCCcEEEEEecCCC
Q 040307          272 CSVADDSRALIWEVVGPG  289 (339)
Q Consensus       272 ~~~~~dg~v~iwd~~~~~  289 (339)
                      +++..|++|++|-.....
T Consensus      1199 lvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1199 LVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred             EEEcCCCcEEEEEeCCCC
Confidence            788899999999887765

>smart00564 PQQ beta-propeller repeat

Probab=82.31  E-value=4.2  Score=20.44  Aligned_cols=25  Identities=20%  Similarity=-0.005  Sum_probs=20.4

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeee
Q 040307          137 RRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus       137 ~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                      ..++.++.+|.+..+|.++++.+..
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            4677788899999999998886654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=82.21  E-value=23  Score=34.10  Aligned_cols=86  Identities=12%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE-EeeCC---C-eEEEEecCCCCCceEEEecCCCCeeE
Q 040307          186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT-VGMDS---N-KVVVLDIRFPTNPVVVLSKHEGSVNG  260 (339)
Q Consensus       186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d~---~-~i~i~d~~~~~~~~~~~~~~~~~v~~  260 (339)
                      .+.|.+-|.........-..   ...++.+-+|+| +|+.|+- .+.++   . .|++-|+++.+.-+.++......|..
T Consensus       328 ~~~L~~~D~dG~n~~~ve~~---~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaipr  403 (912)
T TIGR02171       328 TGNLAYIDYTKGASRAVEIE---DTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPR  403 (912)
T ss_pred             CCeEEEEecCCCCceEEEec---CCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccc
Confidence            35788888877654332122   357889999999 8888876 55555   2 48899998877767777777888888


Q ss_pred             EEeccCCCCeEEEEe
Q 040307          261 ISWAPLYGRRLCSVA  275 (339)
Q Consensus       261 ~~~~p~~~~~l~~~~  275 (339)
                      -...++|+..|+-.+
T Consensus       404 wrv~e~gdt~ivyv~  418 (912)
T TIGR02171       404 WRVLENGDTVIVYVS  418 (912)
T ss_pred             eEecCCCCeEEEEEc
Confidence            888888876666544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=82.20  E-value=16  Score=26.13  Aligned_cols=86  Identities=8%  Similarity=0.052  Sum_probs=51.2

Q ss_pred             EEecCCCCeEEEEeeCCCeEEEEecCCC-------CCceEEEecCCCCeeEEEecc---C-CCCeEEEEeCCCcEEEEEe
Q 040307          217 EWNKADPRFMATVGMDSNKVVVLDIRFP-------TNPVVVLSKHEGSVNGISWAP---L-YGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~p---~-~~~~l~~~~~dg~v~iwd~  285 (339)
                      .|.. ....|++++..++ |.|++....       ...+..+.- ...|++++-.|   + +...|+.|+ ...+..||+
T Consensus         5 kfDG-~~pcL~~aT~~gK-V~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    5 KFDG-VHPCLACATTGGK-VFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EeCC-CceeEEEEecCCE-EEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            4543 3346777777776 889876532       223445543 55777775544   2 223566665 568999999


Q ss_pred             cCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307          286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS  319 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  319 (339)
                      ....             -+........|+++.+-
T Consensus        81 ~~N~-------------d~Fyke~~DGvn~i~~g  101 (136)
T PF14781_consen   81 ENNS-------------DLFYKEVPDGVNAIVIG  101 (136)
T ss_pred             ccCc-------------hhhhhhCccceeEEEEE
Confidence            9877             23333344556666654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.20  E-value=5.9  Score=21.20  Aligned_cols=39  Identities=10%  Similarity=0.098  Sum_probs=25.3

Q ss_pred             CCCEEEE-EeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307          135 DTRRVAT-CSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus       135 ~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                      +++.|.+ ...++.|.++|..+++.+..+.. ......+.|
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            4554444 44588999999988887777754 233344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=81.99  E-value=40  Score=30.64  Aligned_cols=251  Identities=11%  Similarity=0.106  Sum_probs=115.1

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-CCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcc
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-PYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRT  108 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~  108 (339)
                      +..++.+.    .+|.+....++.++..+..  .. .+. .....++.+..++.    .+|..|++  .=.++.+.....
T Consensus       222 ~~~~lL~~----e~G~l~~l~l~~~~~~i~i--~~-~g~~~~~~s~l~~l~~g~----d~lf~gs~~gds~l~~~~~~~l  290 (504)
T PF10433_consen  222 GDRILLQD----EDGDLYLLTLDNDGGSISI--TY-LGTLCSIASSLTYLKNGG----DYLFVGSEFGDSQLLQISLSNL  290 (504)
T ss_dssp             SSEEEEEE----TTSEEEEEEEEEEEEEEEE--EE-EEE--S-ESEEEEESTT------EEEEEESSS-EEEEEEESESE
T ss_pred             CCEEEEEe----CCCeEEEEEEEECCCeEEE--EE-cCCcCChhheEEEEcCCC----EEEEEEEecCCcEEEEEeCCCc
Confidence            67788888    7999999776665542221  11 333 55667888877652    57777663  333333334444


Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCC---CCC------EEEEEe---CCCeEEEEECCCCeeee----eeeccC--Ccee
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGF---DTR------RVATCS---VDTTCVIWDIDREILET----QLVAHD--REVY  170 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~------~l~~~~---~d~~v~i~d~~~~~~~~----~~~~~~--~~v~  170 (339)
                      +.+..+...      +||.+++.-+.   ...      .|++++   .+|.+++..-  |-...    ......  ..++
T Consensus       291 ~~~~~~~N~------~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW  362 (504)
T PF10433_consen  291 EVLDSLPNW------GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIW  362 (504)
T ss_dssp             EEEEEE----------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEE
T ss_pred             EEEEeccCc------CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEE
Confidence            566666654      68999988531   111      444443   4778887642  22111    111122  2344


Q ss_pred             EEEecC--CcEEEEEeCCCcEEEEECCC---CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          171 DISWGG--FNVFASVSGDCSVRVFDLRD---KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       171 ~~~~~~--~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      .+....  +.+|+.+..+ .-+++.+..   .+..... ....-......+....-.+..++=.+..+  |++.+... .
T Consensus       363 ~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~-~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~--i~l~~~~~-~  437 (504)
T PF10433_consen  363 TLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEV-EEDGFDTDEPTLAAGNVGDGRIVQVTPKG--IRLIDLED-G  437 (504)
T ss_dssp             EE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEETTTEEEEEESSE--EEEEESSS-T
T ss_pred             EeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhh-hhccCCCCCCCeEEEEcCCCeEEEEecCe--EEEEECCC-C
Confidence            444331  4566665544 445666642   2221111 11001111112221111234444444443  88888765 3


Q ss_pred             CceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee----ecccceeEEEEecC
Q 040307          246 NPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC----YQSMAEINVVRWSP  320 (339)
Q Consensus       246 ~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p  320 (339)
                      +....... ....|.+.+.+..   +++.+-.++.+.++.+....           ......    ......|.++...|
T Consensus       438 ~~~~~w~~~~~~~I~~a~~~~~---~v~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  438 KLTQEWKPPAGSIIVAASINDP---QVLVALSGGELVYFELDDNK-----------ISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SEEEEEE-TTS---SEEEESSS---EEEEEE-TTEEEEEEEETTE-----------EEEEEE----EE-SS-EEEEE---
T ss_pred             eEEEEEeCCCCCeEEEEEECCC---EEEEEEeCCcEEEEEEECCc-----------eeeeeeccccccCCCceEEEEeCC
Confidence            33333322 3445656555542   56666667889999998876           111111    12466788888766

...

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.65  E-value=5.6  Score=21.03  Aligned_cols=29  Identities=14%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccC--CeEEEE
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYS--NKIELV   51 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~--~~i~i~   51 (339)
                      ...-....||||   |+.|+..+.   .+  |...||
T Consensus         8 ~~~~~~p~~SpD---Gk~i~f~s~---~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPD---GKYIYFTSN---RNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TT---SSEEEEEEE---CT--SSEEEE
T ss_pred             CccccCEEEecC---CCEEEEEec---CCCCCCcCEE
Confidence            446778899999   999998885   34  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN02153 epithiospecifier protein

Probab=80.62  E-value=35  Score=29.08  Aligned_cols=64  Identities=13%  Similarity=0.126  Sum_probs=35.5

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCee--eeeeec----cCCceeEEEecCCcEEEEEeCC-----------CcEEEE
Q 040307          135 DTRRVATCSVD-----TTCVIWDIDREIL--ETQLVA----HDREVYDISWGGFNVFASVSGD-----------CSVRVF  192 (339)
Q Consensus       135 ~~~~l~~~~~d-----~~v~i~d~~~~~~--~~~~~~----~~~~v~~~~~~~~~~l~~~~~d-----------~~i~i~  192 (339)
                      ++++++.|+.+     ..+.+||+.+.+-  +..+..    ....-.+++..++.+++.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            56777787753     3577889876541  111100    0111122333367777777754           247788


Q ss_pred             ECCCCc
Q 040307          193 DLRDKE  198 (339)
Q Consensus       193 d~~~~~  198 (339)
                      |+.+.+
T Consensus       165 d~~~~~  170 (341)
T PLN02153        165 NIADGK  170 (341)
T ss_pred             ECCCCe
Confidence            888765

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=80.61  E-value=32  Score=28.61  Aligned_cols=204  Identities=11%  Similarity=0.014  Sum_probs=0.0

Q ss_pred             eEEEEcCCCCCCCCCeEEEeCC--cEEEEeec-----CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCE---------
Q 040307           75 TNIAFFPSEETLNPDIVATSGD--SLRLWEIH-----DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRR---------  138 (339)
Q Consensus        75 ~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------  138 (339)
                      +.|+++|.+     .+-++..+  ...+||.+     .-...++.++.......-....+.+.|+. ...+         
T Consensus        26 WGia~~p~~-----~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~   99 (336)
T TIGR03118        26 WGLSYRPGG-----PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITG   99 (336)
T ss_pred             ceeEecCCC-----CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccc


Q ss_pred             ---EEEEeCCCeEEEEECCCCee-------eeeeeccCCceeEEEec----CCcEEEEEeCCCcEEEEECCCCcceee--
Q 040307          139 ---VATCSVDTTCVIWDIDREIL-------ETQLVAHDREVYDISWG----GFNVFASVSGDCSVRVFDLRDKERSTI--  202 (339)
Q Consensus       139 ---l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~v~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~--  202 (339)
                         ++.+++||+|.-|...-+..       +..-.....--..+++.    ...+.++--..++|.+||-.-.+....  
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~  179 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS  179 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC


Q ss_pred             -------------EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC--CeeEEEeccC-
Q 040307          203 -------------IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG--SVNGISWAPL-  266 (339)
Q Consensus       203 -------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~p~-  266 (339)
                                   -...-...-.|+-..-.+ +++.=+.|.-.|. |.+||+.  +..++++.....  .-+.|+..|. 
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~-VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGY-VNVFTLN--GQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcce-EEEEcCC--CcEEEEeccCCcccCCceeeeChhh


Q ss_pred             -----CCCeEEEEeCCCcEEEEEecCCC
Q 040307          267 -----YGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       267 -----~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                           + .+|+---.||+|..||..++.
T Consensus       256 FG~~sg-~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       256 FGSLSG-ALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             hCCCCC-CeEEeecCCceeEEecCCCCc

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.41  E-value=9.2  Score=35.10  Aligned_cols=33  Identities=12%  Similarity=0.161  Sum_probs=24.2

Q ss_pred             CeeEEEecc---CCCCeEEEEeCCCcEEEEEecCCC
Q 040307          257 SVNGISWAP---LYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       257 ~v~~~~~~p---~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+..+++++   ++..+|++.+.|+.+|+||+.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~  251 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ  251 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence            455566666   233699999999999999999887

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	339
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-04

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 15/229 (6%)
Query: 71  PYTPTNIAFFPSEETLNPDIVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSF 129
           P  P +  +F +       + +  GD  +R+W    D    KS+L+          +   
Sbjct: 12  PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG----HQRTVRKV 67
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDREILE--TQLVAHDREVYDISWG-GFNVFASVSGD 186
            W+      +A+ S D T  IW  +++  E  T L  H+ EV  ++W    N+ A+ S D
Sbjct: 68  AWSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 187 CSVRVF--DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244
            SV V+  D  D+     +  +  QD  +  + W+ +    +A+   D    +  +    
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQD--VKHVVWHPSQ-ELLASASYDDTVKLYREEEDD 183
Query: 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG 293
                 L  HE +V  +++ P  G+RL S +DD    IW    PG   G
Sbjct: 184 WVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQG 231

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFN-VFASVSGDCSVRVFD-LRDKE 198
           + S D T  +WD+       + V H  EVY +++   N    S   +  +++++ L + +
Sbjct: 93  SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 199 RSTIIYENP------VQDCPLLRLEWNKADP--RFMATVGMDSNKVVVLDIRFPTNPVVV 250
            S+   EN       V+  P+++   NK  P   + A+VG D  ++ V +  F       
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSA-NKVQPFAPYFASVGWDG-RLKVWNTNFQIR--YT 208
Query: 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM 310
              HE +VN +S +P  G+ + +   D + LIW+++   Y            P+  + + 
Sbjct: 209 FKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTY------------PQREFDAG 255
Query: 311 AEINVVRWSPLELDWIAIA 329
           + IN + ++P +L W+A+ 
Sbjct: 256 STINQIAFNP-KLQWVAVG 273

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
Query: 66  LIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSA 125
           ++ +H     ++ + PSE  L     ++  D++R+W+ +DD  E  ++LN ++ + +SS 
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLAS---SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 126 ITSFDWAGFDTRRVATCSVDTTCVIWDI--DREILETQLV-------AHDREVYDISWGG 176
               +       R+ + S D+T  +W    D E  + + V        H R+VY+++WG 
Sbjct: 205 FDKTE----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF 260
Query: 177 FNVFASVSGDCSVRVFDLRDKE 198
             + ASV  D  + V++  D E
Sbjct: 261 NGLIASVGADGVLAVYEEVDGE 282

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 14/204 (6%)
Query: 131 WAGFDTRRVATCSVDTTCVIWDIDREILETQLV-------AHDREVYDISWGGFN--VFA 181
           W    +  + + S D T  +WDI+    E ++V        H   V D++W   +  +F 
Sbjct: 187 WNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFG 246
Query: 182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241
           SV+ D  + ++D R    S   +        +  L +N      +AT   D   V + D+
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 305
Query: 242 RFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301
           R     +     H+  +  + W+P     L S   D R  +W++   G    +   + D 
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG-EEQSAEDAEDG 364
Query: 302 EPELCY---QSMAEINVVRWSPLE 322
            PEL +      A+I+   W+P E
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNE 388

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 23/233 (9%)
Query: 90  IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149
           + A+   ++ LW+I     E K +      +  ++ +    W         + + D   +
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 150 IWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKERSTIIY 204
           IWD    +       + AH  EV  +S+  ++ F  A+ S D +V ++DLR+ +     +
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTNPVVVL 251
           E+   +  + +++W+  +   +A+ G D  ++ V D+               P   + + 
Sbjct: 314 ESHKDE--IFQVQWSPHNETILASSGTD-RRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304
             H   ++  SW P     +CSV++D+   +W++    Y   +  P G V+PE
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED--PEGSVDPE 421

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 103/239 (43%), Gaps = 30/239 (12%)
Query: 86  LNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144
           LN  +++ S D ++ LW+I+    E + +   N  +  ++ +    W         + + 
Sbjct: 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252
Query: 145 DTTCVIWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKER 199
           D   +IWD    +       + AH  EV  +S+  ++ F  A+ S D +V ++DLR+ + 
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTN 246
               +E+   +  + +++W+  +   +A+ G D  ++ V D+               P  
Sbjct: 313 KLHSFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPE 369
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305
            + +   H   ++  SW P     +CSV++D+   +W++    Y         D EPE+
Sbjct: 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN--------DEEPEI 420

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 103/239 (43%), Gaps = 30/239 (12%)
Query: 86  LNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144
           LN  +++ S D ++ LW+I+    E + +   N  +  ++ +    W         + + 
Sbjct: 195 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 254
Query: 145 DTTCVIWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKER 199
           D   +IWD    +       + AH  EV  +S+  ++ F  A+ S D +V ++DLR+ + 
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTN 246
               +E+   +  + +++W+  +   +A+ G D  ++ V D+               P  
Sbjct: 315 KLHSFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPE 371
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305
            + +   H   ++  SW P     +CSV++D+   +W++    Y         D EPE+
Sbjct: 372 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN--------DEEPEI 422

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90  IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
           IV +SGD+   LW+I   +       ++      S A         DTR   + + D + 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
            +WD+   +       H+ ++  I +    N FA+ S D + R+FDLR D+E  T  ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
            +  C +  + ++K+    +A  G D     V D     +   VL+ H+  V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90  IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
           IV +SGD+   LW+I   +       ++      S A         DTR   + + D + 
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 219
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
            +WD+   +       H+ ++  I +    N FA+ S D + R+FDLR D+E  T  ++N
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 279
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
            +  C +  + ++K+    +A  G D     V D     +   VL+ H+  V+
Sbjct: 280 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 327

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90  IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
           IV +SGD+   LW+I   +       ++      S A         DTR   + + D + 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
            +WD+   +       H+ ++  I +    N FA+ S D + R+FDLR D+E  T  ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
            +  C +  + ++K+    +A  G D     V D     +   VL+ H+  V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90  IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
           IV +SGD+   LW+I   +       ++      S A         DTR   + + D + 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
            +WD+   +       H+ ++  I +    N FA+ S D + R+FDLR D+E  T  ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
            +  C +  + ++K+    +A  G D     V D     +   VL+ H+  V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90  IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
           IV +SGD+   LW+I   +       ++      S A         DTR   + + D + 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
            +WD+   +       H+ ++  I +    N FA+ S D + R+FDLR D+E  T  ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
            +  C +  + ++K+    +A  G D     V D     +   VL+ H+  V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDR-EILET-QLVAHDREVYDISW-GGFNVFASVSGD 186
           DW+  +   VA   +D +  +W     +IL+  Q+      +  ++W    N  A  +  
Sbjct: 123 DWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 179
Query: 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246
             V+++D++ ++R   +  +  +   +  L WN     ++ + G  S  +   D+R   +
Sbjct: 180 AEVQLWDVQQQKRLRNMTSHSAR---VGSLSWNS----YILSSGSRSGHIHHHDVRVAEH 232
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306
            V  LS H   V G+ WAP  GR L S  +D+   +W            G  G V  +  
Sbjct: 233 HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 283
Query: 307 YQSMAEINVVRWSPLELDWIAIA 329
            Q    +  V W P + + +A  
Sbjct: 284 TQHQGAVKAVAWCPWQSNVLATG 306

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDR-EILET-QLVAHDREVYDISW-GGFNVFASVSGD 186
           DW+  +   VA   +D +  +W     +IL+  Q+      +  ++W    N  A  +  
Sbjct: 112 DWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168
Query: 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246
             V+++D++ ++R   +  +  +   +  L WN     ++ + G  S  +   D+R   +
Sbjct: 169 AEVQLWDVQQQKRLRNMTSHSAR---VGSLSWNS----YILSSGSRSGHIHHHDVRVAEH 221
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306
            V  LS H   V G+ WAP  GR L S  +D+   +W            G  G V  +  
Sbjct: 222 HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 272
Query: 307 YQSMAEINVVRWSPLELDWIAIA 329
            Q    +  V W P + + +A  
Sbjct: 273 TQHQGAVKAVAWCPWQSNVLATG 295

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 90  IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149
           + A+   ++ LW+I+    E K +      +  S+ +    W         + + D   +
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 150 IWDIDREILE--TQLV-AHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKERSTIIY 204
           IWD         + LV AH  EV  +S+  ++ F  A+ S D +V ++DLR+ +     +
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTNPVVVL 251
           E+   +  + ++ W+  +   +A+ G D  ++ V D+               P   + + 
Sbjct: 316 ESHKDE--IFQVHWSPHNETILASSGTD-RRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286
             H   ++  SW P     +CSV++D+   IW++ 
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 25/225 (11%)
Query: 65  RLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSS 124
           + +  H  +   +AF P  +T+     A+   +++LW  +    +L   L  + +S +  
Sbjct: 92  QTLTGHSSSVRGVAFSPDGQTI---ASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGV 145
Query: 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV 183
           A +       D + +A+ S D T  +W+ + ++L+T L  H   V+ +++       AS 
Sbjct: 146 AFSP------DGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIASA 198
Query: 184 SGDCSVRVFDLRDKERSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242
           S D +V++++   +   T+  + + V+            D + +A+   D  K V L  R
Sbjct: 199 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF------SPDGQTIASASDD--KTVKLWNR 250
Query: 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287
                +  L+ H  SVNG+++ P  G+ + S +DD    +W   G
Sbjct: 251 NG-QLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNG 293

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 97/220 (44%), Gaps = 22/220 (10%)
Query: 86  LNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144
           LN  +++ S D ++ LW+I+    E + +   N  +  ++ +    W         + + 
Sbjct: 197 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 256
Query: 145 DTTCVIWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKER 199
           D   +IWD    +       + AH  EV  +S+  ++ F  A+ S D +V ++DLR+ + 
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTN 246
               +E+   +  + +++W+  +   +A+ G D  ++ V D+               P  
Sbjct: 317 KLHSFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPE 373
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286
            + +   H   ++  SW P     +CSV++D+   +W++ 
Sbjct: 374 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDR-EILET-QLVAHDREVYDISW-GGFNVFASVSGD 186
           DW+  +   VA   +D +  +W     +IL+  Q+      +  ++W    N  A  +  
Sbjct: 32  DWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88
Query: 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246
             V+++D++ ++R   +  +  +   +  L WN     ++ + G  S  +   D+R   +
Sbjct: 89  AEVQLWDVQQQKRLRNMTSHSAR---VGSLSWNS----YILSSGSRSGHIHHHDVRVAEH 141
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306
            V  LS H   V G+ WAP  GR L S  +D+   +W            G  G V  +  
Sbjct: 142 HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 192
Query: 307 YQSMAEINVVRWSPLELDWIAIA 329
            Q    +  V W P + + +A  
Sbjct: 193 TQHQGAVKAVAWCPWQSNVLATG 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.44
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.4
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.18
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.18
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.1
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.02
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.99
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.99
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.98
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.94
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.93
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.91
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.91
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.86
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.64
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.6
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.55
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.54
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.52
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.52
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.51
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.42
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.39
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.37
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.36
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.25
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.23
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.23
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.13
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.11
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.02
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.97
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.89
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.85
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.84
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.83
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.76
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.74
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.69
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.65
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.63
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.61
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.61
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.41
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.41
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.39
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.33
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.3
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.26
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.19
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.98
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.9
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.9
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.72
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.72
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.69
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.57
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.79
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.47
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.36
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.36
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.11
3ott_A	758	Two-component system sensor histidine kinase; beta	94.86
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.71
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.07
3ott_A	758	Two-component system sensor histidine kinase; beta	93.91
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.91
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.88
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.09
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.07
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.46
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.89
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.34
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	84.47
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	80.99
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	80.19

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.5e-50  Score=338.96  Aligned_cols=294  Identities=16%  Similarity=0.217  Sum_probs=237.7

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccc--cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLED--YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      .|...|.+++||||   |++||+|+....  -|+.|++|+............. ...|...|.+++|+|++     .+++
T Consensus        40 ~H~~~V~~v~fSpD---G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s~d~-----~~l~  110 (357)
T 4g56_B           40 CMEVQIGAVRYRRD---GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQTEAGVTDVAWVSEK-----GILV  110 (357)
T ss_dssp             CCCSEEEEEEECSS---SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EEECSSCEEEEEEETTT-----EEEE
T ss_pred             cccCCEEEEEECCC---CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cCCCCCCEEEEEEcCCC-----CEEE
Confidence            36788999999999   999999982000  0677888665443322222112 25789999999999998     7888


Q ss_pred             EeCC-cEEEEeecCCcceeE--EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce
Q 040307           93 TSGD-SLRLWEIHDDRTELK--SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV  169 (339)
Q Consensus        93 ~~~~-~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v  169 (339)
                      ++.+ +|+|||+.+++....  ....+|.     ..|++++|+| ++++|++|+.|+.|++||+++++.+..+.+|...|
T Consensus       111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          111 ASDSGAVELWEILEKESLLVNKFAKYEHD-----DIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             EETTSCEEEC--------CCCCEEECCCS-----SCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EECCCEEEEeeccccceeEEEeeccCCCC-----CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            7777 999999988762222  2334566     8999999998 99999999999999999999999999999999999


Q ss_pred             eEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307          170 YDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP  247 (339)
Q Consensus       170 ~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~  247 (339)
                      ++++|+ + ..++++++.|+.|++||+++++...... ...+...+.+++|+|.++.+|++|+.|+. |++||++. .++
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~-~~~  261 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKN-PDS  261 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSC-GGG
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-eccccccccchhhhhcccceEEEeecccc-eeEEECCC-CcE
Confidence            999999 4 4589999999999999999887544432 23456789999999977889999999999 99999987 667


Q ss_pred             eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC-CCCceE
Q 040307          248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP-LELDWI  326 (339)
Q Consensus       248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~  326 (339)
                      +..+.+|...|++++|+|+++++|++++.|++|+|||++..+             .+...+|...|++++|+| ++..|+
T Consensus       262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-------------~~~~~~H~~~V~~vafsP~d~~~l~  328 (357)
T 4g56_B          262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-------------VFRDLSHRDFVTGVAWSPLDHSKFT  328 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE-------------EEEECCCSSCEEEEEECSSSTTEEE
T ss_pred             eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-------------EeEECCCCCCEEEEEEeCCCCCEEE
Confidence            889999999999999999986789999999999999998876             566678999999999999 677788


Q ss_pred             EEecCCeEEEEeC
Q 040307          327 AIAFVNKLQLLKV  339 (339)
Q Consensus       327 ~~~~d~~v~~w~v  339 (339)
                      +++.|++|++|++
T Consensus       329 s~s~Dg~v~iW~~  341 (357)
T 4g56_B          329 TVGWDHKVLHHHL  341 (357)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EEcCCCeEEEEEC
Confidence            8999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-49  Score=335.14  Aligned_cols=289  Identities=15%  Similarity=0.186  Sum_probs=235.0

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEec-----CCCCC-cccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNF-----NPETS-DFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~-----~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      ++..|.+++|+||   |++|++++     |+++++|+.     +.... ...........+...|.+++|+|++     .
T Consensus        29 ~~~~v~~~~fs~d---G~~l~~~s-----d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-----~   95 (344)
T 4gqb_B           29 MERQLEAARYRSD---GALLLGAS-----SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-----G   95 (344)
T ss_dssp             CCSEEEEEEECTT---SCEEEEEE-----CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-----E
T ss_pred             ccCCEEEEEECCC---CCEEEEEe-----CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-----e
Confidence            4567999999999   99999887     677777542     11110 0000001124567889999999987     6


Q ss_pred             eEEEeCC-cEEEEeecCCccee--EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           90 IVATSGD-SLRLWEIHDDRTEL--KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        90 ~la~~~~-~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      +++++.| +|+|||+++++...  ...+.+|.     ..|++++|+| ++++|++|+.|++|++||+++++.+..+.+|.
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~-----~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  169 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHD-----DIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA  169 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCC-----CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence            6655556 99999999886322  23345677     8999999998 99999999999999999999999999999999


Q ss_pred             CceeEEEec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          167 REVYDISWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       167 ~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..|++++|+ ++ .+|++++.|+.|++||+++++....+.. ..+...+.+++|+|.++++|++|+.|+. |++||++. 
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~-  246 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKS-  246 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC-
T ss_pred             CceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCc-EEEEECCC-
Confidence            999999999 44 5889999999999999999875554332 2345678999999978889999999998 99999997 


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      .+++..+.+|...|++++|+|++.++|++|+.|++|+|||+...+             .....+|...|++++|+|+++.
T Consensus       247 ~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-------------~~~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-------------LFRSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             --CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-------------EEEECCCSSCEEEEEECSSSTT
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-------------EEEEcCCCCCEEEEEEeCCCCe
Confidence            678899999999999999999986689999999999999998766             5667789999999999999987


Q ss_pred             eE-EEecCCeEEEEeC
Q 040307          325 WI-AIAFVNKLQLLKV  339 (339)
Q Consensus       325 l~-~~~~d~~v~~w~v  339 (339)
                      ++ +++.|++|++|++
T Consensus       314 llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             EEEEEETTSCEEEEEC
T ss_pred             EEEEEcCCCeEEEEEC
Confidence            66 6789999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-48  Score=337.38  Aligned_cols=283  Identities=15%  Similarity=0.215  Sum_probs=250.5

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|..+|++++|+|+   +.+|++|+    .|+.|+||++.......    .+ .+|.+.|.+++|+|++     .+|++
T Consensus       105 ~gh~~~V~~~~~~p~---~~~l~s~s----~Dg~i~vwd~~~~~~~~----~l-~~h~~~V~~v~~~~~~-----~~l~s  167 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPV---FSVMVSAS----EDATIKVWDYETGDFER----TL-KGHTDSVQDISFDHSG-----KLLAS  167 (410)
T ss_dssp             ECCSSCEEEEEECSS---SSEEEEEE----SSSCEEEEETTTCCCCE----EE-CCCSSCEEEEEECTTS-----SEEEE
T ss_pred             cccCCcEEEEEEcCC---CCEEEEEe----CCCeEEEEECCCCcEEE----EE-eccCCcEEEEEEcCCC-----CEEEE
Confidence            357899999999999   99999999    79999998876543322    23 6899999999999999     89998


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      |+ | +|++||+.+.+  ++..+.+|.     ..|.+++|+| ++++|++|+.|++|++||++++.++..+.+|...|.+
T Consensus       168 gs~D~~i~iwd~~~~~--~~~~~~~h~-----~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~  239 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFE--CIRTMHGHD-----HNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  239 (410)
T ss_dssp             EETTSCCCEEETTSSC--EEECCCCCS-----SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EeCCCeEEEEeCCCCc--eeEEEcCCC-----CCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence            87 5 99999998876  788888888     8999999998 9999999999999999999999999999999999999


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC-------------------CCeEEEEee
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD-------------------PRFMATVGM  231 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~l~~~~~  231 (339)
                      +.++ ++.+|++++.|+.|++||+++.+....+ .  .|...|.+++|+|..                   +.+|++|+.
T Consensus       240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~-~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~  316 (410)
T 1vyh_C          240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-R--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  316 (410)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-C--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeEe-c--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence            9999 7999999999999999999988754433 2  367899999999832                   678999999


Q ss_pred             CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307          232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA  311 (339)
Q Consensus       232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (339)
                      |+. |++||++. +.++..+.+|...|.+++|+|++ .+|++++.|+.|++||+....            .......|..
T Consensus       317 D~~-i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~------------~~~~~~~h~~  381 (410)
T 1vyh_C          317 DKT-IKMWDVST-GMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR------------CMKTLNAHEH  381 (410)
T ss_dssp             TSE-EEEEETTT-TEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC------------CCEEEECCSS
T ss_pred             CCe-EEEEECCC-CceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc------------eEEEEcCCCC
Confidence            999 99999987 66788999999999999999999 699999999999999998766            2345568999


Q ss_pred             eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          312 EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .|++++|+|+++++++++.|++|++|++
T Consensus       382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            9999999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-48  Score=325.19  Aligned_cols=286  Identities=16%  Similarity=0.273  Sum_probs=247.4

Q ss_pred             eccCCeeEEEeeecC-CcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           15 MAQWPISTVAWSVRH-DRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~-~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .|.++|.+++|+|+. .++.+|++|+    .|+.|+||++.........  .+ .+|...|.+++|++++     .++++
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs----~D~~v~vW~~~~~~~~~~~--~l-~gh~~~v~~~~~~~~~-----~~l~s   97 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGS----LDDLVKVWKWRDERLDLQW--SL-EGHQLGVVSVDISHTL-----PIAAS   97 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEE----TTSCEEEEEEETTEEEEEE--EE-CCCSSCEEEEEECSSS-----SEEEE
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEc----CCCCEEEEECCCCCeeeee--ee-ccCCCCEEEEEECCCC-----CEEEE
Confidence            488999999999852 1267899999    7999999988754332221  23 6899999999999999     89998


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      ++ | +|++||+.+++  .+..+..+.     ..+.+++|+| ++++|++++.||.|++||+++++....+..|...|.+
T Consensus        98 ~s~D~~i~lWd~~~~~--~~~~~~~~~-----~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~  169 (321)
T 3ow8_A           98 SSLDAHIRLWDLENGK--QIKSIDAGP-----VDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS  169 (321)
T ss_dssp             EETTSEEEEEETTTTE--EEEEEECCT-----TCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred             EeCCCcEEEEECCCCC--EEEEEeCCC-----ccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence            87 5 99999999887  777787776     7889999998 9999999999999999999999988888889999999


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      ++|+ ++++|++++.|+.|++||+++++.... ..  .|..+|.+++|+| ++++|++++.|+. |++||++. ......
T Consensus       170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~--~h~~~v~~l~~sp-d~~~l~s~s~dg~-i~iwd~~~-~~~~~~  243 (321)
T 3ow8_A          170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LE--GHAMPIRSLTFSP-DSQLLVTASDDGY-IKIYDVQH-ANLAGT  243 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC--CCSSCCCEEEECT-TSCEEEEECTTSC-EEEEETTT-CCEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-Ec--ccCCceeEEEEcC-CCCEEEEEcCCCe-EEEEECCC-cceeEE
Confidence            9999 799999999999999999998874433 33  3678999999998 8999999999999 99999987 667888


Q ss_pred             EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      +.+|...|.+++|+|++ .+|++++.|+.|++||+....            ......+|...|.+++|+|++..|++++.
T Consensus       244 ~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~------------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          244 LSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRT------------CVHTFFDHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCE------------EEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            99999999999999999 699999999999999998876            23355689999999999999999999999


Q ss_pred             CCeEEEEeC
Q 040307          331 VNKLQLLKV  339 (339)
Q Consensus       331 d~~v~~w~v  339 (339)
                      |+.|++|++
T Consensus       311 d~~i~vwd~  319 (321)
T 3ow8_A          311 DQEIHIYDC  319 (321)
T ss_dssp             TCCEEEEEC
T ss_pred             CCeEEEEeC
Confidence            999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.3e-47  Score=313.83  Aligned_cols=288  Identities=17%  Similarity=0.208  Sum_probs=243.8

Q ss_pred             eeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307           10 GVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus        10 ~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      ...++. |.++|.+++|+|+   +++|++|+    .||.|+||++...  ....  .+ ..|..+|.+++|+|++     
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~---~~~l~s~~----~dg~v~lWd~~~~--~~~~--~~-~~~~~~v~~~~~~~~~-----   67 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPT---EPWVLTTL----YSGRVELWNYETQ--VEVR--SI-QVTETPVRAGKFIARK-----   67 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSS---SSEEEEEE----TTSEEEEEETTTT--EEEE--EE-ECCSSCEEEEEEEGGG-----
T ss_pred             eEEeecCCCCceEEEEECCC---CCEEEEEc----CCCcEEEEECCCC--ceeE--Ee-eccCCcEEEEEEeCCC-----
Confidence            334443 7889999999999   99999999    7999999887643  2222  23 5788999999999999     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeecc
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAH  165 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~  165 (339)
                      ++|++|+ | .|++||+.+++  .+..+.+|.     ..|++++|+| ++.+|++|+.|++|++||++++ .....+.+|
T Consensus        68 ~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h  139 (304)
T 2ynn_A           68 NWIIVGSDDFRIRVFNYNTGE--KVVDFEAHP-----DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (304)
T ss_dssp             TEEEEEETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred             CEEEEECCCCEEEEEECCCCc--EEEEEeCCC-----CcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence            8888887 4 99999999987  788889988     8999999998 8999999999999999999877 455678899


Q ss_pred             CCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecC
Q 040307          166 DREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       166 ~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      ...|.+++|+|  +.+|++++.|+.|++||++.......+...  +...+..+.|+|. ++.+|++++.|+. |++||++
T Consensus       140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~  216 (304)
T 2ynn_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQ  216 (304)
T ss_dssp             CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETT
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCC
Confidence            99999999993  679999999999999999887755544433  5578999999873 5679999999999 9999998


Q ss_pred             CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307          243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE  322 (339)
Q Consensus       243 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~  322 (339)
                      . .+++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+.+            .......|...+.+++|+|++
T Consensus       217 ~-~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~  282 (304)
T 2ynn_A          217 T-KSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK------------VEKTLNVGLERSWCIATHPTG  282 (304)
T ss_dssp             T-TEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC------------EEEEECCSSSSEEEEEECTTC
T ss_pred             C-CccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc------------eeeeccCCCccEEEEEECCCC
Confidence            7 67789999999999999999999 599999999999999999877            222445678899999999988


Q ss_pred             Cc-eEEEecCCeEEEEeC
Q 040307          323 LD-WIAIAFVNKLQLLKV  339 (339)
Q Consensus       323 ~~-l~~~~~d~~v~~w~v  339 (339)
                      .. +++++.++.+.+|++
T Consensus       283 ~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          283 RKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             GGGCEEEEETTEEEEEEC
T ss_pred             CceEEEEecCCceEEEEe
Confidence            64 467777777887764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-46  Score=317.62  Aligned_cols=304  Identities=19%  Similarity=0.291  Sum_probs=241.2

Q ss_pred             ceeeeee-ccC-CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307            9 PGVHTYM-AQW-PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         9 ~~~~~~~-~~~-~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      +.+.++. |.. +|.+++|+|+   +++||+|+    .|+.|+||++........  ..+..+|...|.+++|+|++   
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~---g~~las~~----~D~~i~iw~~~~~~~~~~--~~~~~~h~~~v~~~~~sp~g---   73 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPA---GTLLASCG----GDRRIRIWGTEGDSWICK--SVLSEGHQRTVRKVAWSPCG---   73 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTT---SSCEEEEE----TTSCEEEEEEETTEEEEE--EEECSSCSSCEEEEEECTTS---
T ss_pred             EEeeeecCCCCCcEEEEEECCC---CCEEEEEc----CCCeEEEEEcCCCcceee--eeeccccCCcEEEEEECCCC---
Confidence            3444443 555 8999999999   99999999    799999988765432211  12335799999999999999   


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeee
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQ  161 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~  161 (339)
                        ++|++++ | .+++|++......+...+.+|.     ..|.+++|+| ++++|++|+.|+.|++||++++.   .+..
T Consensus        74 --~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~-----~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           74 --NYLASASFDATTCIWKKNQDDFECVTTLEGHE-----NEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             --SEEEEEETTSCEEEEEECCC-EEEEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             --CEEEEEECCCcEEEEEccCCCeEEEEEccCCC-----CCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence              8999987 5 9999999887666778888888     8999999998 99999999999999999997763   4566


Q ss_pred             eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          162 LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       162 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      +.+|...|.+++|+ ++++|++++.|+.|++||.+..+.... .....|...|.+++|+| ++++|++++.|+. |++||
T Consensus       146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~-v~iW~  222 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDP-SGQRLASCSDDRT-VRIWR  222 (345)
T ss_dssp             ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred             ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EEecCCCCceEEEEECC-CCCEEEEEeCCCe-EEEec
Confidence            78899999999999 789999999999999999987653221 22234788999999998 8999999999999 99999


Q ss_pred             cCCCCC--------------ceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307          241 IRFPTN--------------PVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL  305 (339)
Q Consensus       241 ~~~~~~--------------~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  305 (339)
                      ......              .+..+.+ |...|++++|+|++ ..|++++.|+.|++|+...... +..  +........
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~-~~~--~~~~~~~~~  298 (345)
T 3fm0_A          223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSD-PQQ--PTFSLTAHL  298 (345)
T ss_dssp             EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSC-TTS--CCEEEEEEE
T ss_pred             cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCC-cce--eeEEEEeee
Confidence            754221              1233444 88899999999999 5999999999999999987541 000  000000011


Q ss_pred             eecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v  339 (339)
                      ..+|...|++++|+|+++ .|++++.|+.|++|++
T Consensus       299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred             cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence            236889999999999986 5778899999999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-45  Score=311.60  Aligned_cols=281  Identities=16%  Similarity=0.237  Sum_probs=240.1

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|.+++|+|+   +++|++|+    .|+.|+||+.....  ...  .+ ..|...|.+++|+|++     .+|+++
T Consensus        53 gH~~~v~~~~~s~d---~~~l~s~s----~Dg~v~iWd~~~~~--~~~--~~-~~~~~~v~~~~~s~~~-----~~l~s~  115 (340)
T 1got_B           53 GHLAKIYAMHWGTD---SRLLLSAS----QDGKLIIWDSYTTN--KVH--AI-PLRSSWVMTCAYAPSG-----NYVACG  115 (340)
T ss_dssp             CCSSCEEEEEECTT---SSEEEEEE----TTTEEEEEETTTCC--EEE--EE-ECSSSCEEEEEECTTS-----SEEEEE
T ss_pred             CCCCceEEEEECCC---CCEEEEEe----CCCcEEEEECCCCC--cce--Ee-ecCCccEEEEEECCCC-----CEEEEE
Confidence            47899999999999   99999999    79999998865433  222  22 5788999999999999     889888


Q ss_pred             C-C-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           95 G-D-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      + | .+++|++.+.+  ......+.+|.     ..|.++.|++ ++ .+++++.|+.|++||+++++.+..+.+|...|.
T Consensus       116 ~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~  188 (340)
T 1got_B          116 GLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM  188 (340)
T ss_dssp             ETTCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             eCCCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence            7 5 99999998754  23556777887     8999999986 54 589999999999999999999999999999999


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      +++|+ ++.+|++++.|+.|++||++++..... +.  .|...|.+++|+| ++++|++++.|+. |++||++. .+.+.
T Consensus       189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-~~--~h~~~v~~v~~~p-~~~~l~s~s~d~~-v~iwd~~~-~~~~~  262 (340)
T 1got_B          189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FT--GHESDINAICFFP-NGNAFATGSDDAT-CRLFDLRA-DQELM  262 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-TEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-Ec--CCcCCEEEEEEcC-CCCEEEEEcCCCc-EEEEECCC-CcEEE
Confidence            99999 788999999999999999998874433 33  3678999999999 8999999999999 99999987 44455


Q ss_pred             EEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307          250 VLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA  327 (339)
Q Consensus       250 ~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  327 (339)
                      .+..  +...|.+++|+|++ .+|++|+.|+.|++||+....            ......+|...|.+++|+|++..|++
T Consensus       263 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~------------~~~~~~~h~~~v~~~~~s~dg~~l~s  329 (340)
T 1got_B          263 TYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD------------RAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             EEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCc------------EeeEeecCCCcEEEEEEcCCCCEEEE
Confidence            4442  23479999999999 699999999999999998876            23356689999999999999999999


Q ss_pred             EecCCeEEEEe
Q 040307          328 IAFVNKLQLLK  338 (339)
Q Consensus       328 ~~~d~~v~~w~  338 (339)
                      ++.|+.|++|+
T Consensus       330 ~s~D~~i~iWd  340 (340)
T 1got_B          330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             EcCCccEEecC
Confidence            99999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.3e-45  Score=310.78  Aligned_cols=282  Identities=17%  Similarity=0.244  Sum_probs=239.8

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|++++|+|+   +++||+|+    .|+.|+||+........    .+ ..|...|.+++|+|++     .+|+++
T Consensus        62 gH~~~V~~~~~s~d---~~~l~s~s----~Dg~v~vWd~~~~~~~~----~~-~~~~~~v~~~~~sp~g-----~~lasg  124 (354)
T 2pbi_B           62 GHGNKVLCMDWCKD---KRRIVSSS----QDGKVIVWDSFTTNKEH----AV-TMPCTWVMACAYAPSG-----CAIACG  124 (354)
T ss_dssp             CCSSCEEEEEECTT---SSEEEEEE----TTSEEEEEETTTCCEEE----EE-ECSSSCCCEEEECTTS-----SEEEEE
T ss_pred             CCCCeEEEEEECCC---CCEEEEEe----CCCeEEEEECCCCCcce----EE-ecCCCCEEEEEECCCC-----CEEEEe
Confidence            47899999999999   99999999    89999998765433222    22 5678899999999999     899998


Q ss_pred             C-C-cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307           95 G-D-SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                      + | .+++|++....    ......+..|.     ..|.+++|+| ++..|++++.|++|++||+++++.+..+.+|...
T Consensus       125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----NYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGAD  198 (354)
T ss_dssp             STTSEEEEEECCCCTTCCSGGGCEEEEECS-----SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             eCCCCEEEEEEeccccccccccceeeeccC-----CcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence            8 4 99999986542    22455667777     8999999998 8999999999999999999999999999999999


Q ss_pred             eeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          169 VYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       169 v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      |.+++|+   ++++|++++.|+.|++||+++++.... +.  .|...|.+++|+| ++.+|++++.|+. |++||++. .
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~~--~h~~~v~~v~~~p-~~~~l~s~s~D~~-v~lwd~~~-~  272 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-FE--THESDVNSVRYYP-SGDAFASGSDDAT-CRLYDLRA-D  272 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-T
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec--CCCCCeEEEEEeC-CCCEEEEEeCCCe-EEEEECCC-C
Confidence            9999998   258999999999999999999874433 33  3778999999998 8999999999999 99999987 4


Q ss_pred             CceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307          246 NPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL  323 (339)
Q Consensus       246 ~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  323 (339)
                      ..+..+..+  ...+.+++|+|++ .+|++++.|+.|++||+....            ......+|...|++++|+|+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~------------~~~~l~~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          273 REVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGS------------RVSILFGHENRVSTLRVSPDGT  339 (354)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS------------EEEEECCCSSCEEEEEECTTSS
T ss_pred             cEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCc------------eEEEEECCCCcEEEEEECCCCC
Confidence            444444433  3478999999999 699999999999999998776            2335568999999999999999


Q ss_pred             ceEEEecCCeEEEEe
Q 040307          324 DWIAIAFVNKLQLLK  338 (339)
Q Consensus       324 ~l~~~~~d~~v~~w~  338 (339)
                      +|++++.|+.|++|+
T Consensus       340 ~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          340 AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEecC
Confidence            999999999999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-46  Score=320.63  Aligned_cols=285  Identities=18%  Similarity=0.245  Sum_probs=238.2

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.++|++++|+|+   +++|++|+    .|++|+||+.....  ...  .+ ..|...|.+++|+|++     ++||+|
T Consensus        64 gH~~~V~~~~~sp~---~~~l~s~s----~D~~v~iWd~~~~~--~~~--~~-~~h~~~v~~~~~s~~g-----~~las~  126 (380)
T 3iz6_a           64 GHSGKVYSLDWTPE---KNWIVSAS----QDGRLIVWNALTSQ--KTH--AI-KLHCPWVMECAFAPNG-----QSVACG  126 (380)
T ss_dssp             CCSSCEEEEEECTT---SSCEEEEE----TTSEEEEEETTTTE--EEE--EE-ECCCTTCCCCEECTTS-----SEEEEC
T ss_pred             ccccEEEEEEEcCC---CCEEEEEe----CCCeEEEEECCCCc--cce--EE-ecCCCCEEEEEECCCC-----CEEEEe
Confidence            47899999999999   99999999    79999998865432  222  33 5799999999999999     899998


Q ss_pred             C-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-----
Q 040307           95 G-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-----  162 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----  162 (339)
                      + | .+++|++....     ......+.+|.     ..|.++.|+|.++..|++|+.|++|++||+++++.+..+     
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-----~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-----SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCC-----cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence            8 4 99999987532     22344567777     889999999855678999999999999999999887766     


Q ss_pred             eccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          163 VAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       163 ~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      .+|...|.+++|+  ++++|++|+.|+.|++||++........+..  |...|.+++|+| ++++|++++.|+. |++||
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p-~~~~l~s~s~D~~-i~lwd  277 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--HEGDINSVKFFP-DGQRFGTGSDDGT-CRLFD  277 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC--CSSCCCEEEECT-TSSEEEEECSSSC-EEEEE
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC--cCCCeEEEEEec-CCCeEEEEcCCCe-EEEEE
Confidence            5788999999997  5789999999999999999865444444444  788999999998 8999999999999 99999


Q ss_pred             cCCCCCceEEEecCC-------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee----ecc
Q 040307          241 IRFPTNPVVVLSKHE-------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC----YQS  309 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~  309 (339)
                      ++. +.++..+..+.       ..|.+++|+|++ .+|++|+.||.|++||+...+            .....    .+|
T Consensus       278 ~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~------------~~~~~~~~~~~h  343 (380)
T 3iz6_a          278 MRT-GHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAE------------MVLNLGTLQNSH  343 (380)
T ss_dssp             TTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCC------------EEEEECCSCSSC
T ss_pred             CCC-CcEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCc------------eEEEEecccCCC
Confidence            987 55555555432       248999999999 699999999999999998766            11111    468


Q ss_pred             cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          310 MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...|++++|+|++..|++++.|+.|++|++
T Consensus       344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          344 EGRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             CCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            899999999999999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-44  Score=300.44  Aligned_cols=283  Identities=15%  Similarity=0.235  Sum_probs=241.2

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|.+++|+|+   +++||+|+    .|+.|++|+....  ....  .+ ..|...|.+++|+|++     ++|+++
T Consensus        21 gh~~~v~~~~~s~~---~~~l~s~~----~dg~i~iw~~~~~--~~~~--~~-~~h~~~v~~~~~~~~~-----~~l~s~   83 (312)
T 4ery_A           21 GHTKAVSSVKFSPN---GEWLASSS----ADKLIKIWGAYDG--KFEK--TI-SGHKLGISDVAWSSDS-----NLLVSA   83 (312)
T ss_dssp             CCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETTTC--CEEE--EE-CCCSSCEEEEEECTTS-----SEEEEE
T ss_pred             ccCCcEEEEEECCC---CCEEEEee----CCCeEEEEeCCCc--ccch--hh-ccCCCceEEEEEcCCC-----CEEEEE
Confidence            47889999999999   99999999    7999999876543  3322  23 6899999999999999     888888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | .|++||+++++  ....+.+|.     ..|.+++|+| ++++|++|+.|+.|++||+++++.+..+..|...|.++
T Consensus        84 ~~d~~i~vwd~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           84 SDDKTLKIWDVSSGK--CLKTLKGHS-----NYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             ETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCCEEEEEECCCCc--EEEEEcCCC-----CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence            7 4 99999999887  778888888     8999999998 99999999999999999999999999999999999999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      +|+ ++++|++++.|+.|++||+++.+....+...  +...+..++|+| ++++|++++.|+. |++||++. .+.+..+
T Consensus       156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~~~d~~-i~iwd~~~-~~~~~~~  230 (312)
T 4ery_A          156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSP-NGKYILAATLDNT-LKLWDYSK-GKCLKTY  230 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS--SCCCEEEEEECT-TSSEEEEEETTTE-EEEEETTT-TEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc--CCCceEEEEECC-CCCEEEEEcCCCe-EEEEECCC-CcEEEEE
Confidence            999 7899999999999999999988755544333  557899999998 8999999999998 99999987 6667788


Q ss_pred             ecCCCCee--EEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          252 SKHEGSVN--GISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       252 ~~~~~~v~--~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      .+|...+.  ...+++.++.+|++|+.||.|++||+....            ......+|...|.+++|+|+++.+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE------------IVQKLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch------------hhhhhhccCCcEEEEeecCcCCceEEEE
Confidence            88876543  334554333699999999999999998877            2235567999999999999999888776


Q ss_pred             --cCCeEEEEeC
Q 040307          330 --FVNKLQLLKV  339 (339)
Q Consensus       330 --~d~~v~~w~v  339 (339)
                        .|+.|++|+.
T Consensus       299 ~~~d~~i~~W~~  310 (312)
T 4ery_A          299 LENDKTIKLWKS  310 (312)
T ss_dssp             CTTTCCEEEEEC
T ss_pred             ccCCccEEEecC
Confidence              6999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.1e-44  Score=299.87  Aligned_cols=292  Identities=15%  Similarity=0.167  Sum_probs=236.0

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.++|.+++|+|+  .+++|++|+    .|++|++|++...............+|...|.+++|+|++     .+|+++
T Consensus        15 gH~~~V~~l~~~~~--~~~~l~s~s----~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-----~~l~s~   83 (319)
T 3frx_A           15 GHNGWVTSLATSAG--QPNLLLSAS----RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-----AYALSA   83 (319)
T ss_dssp             CCSSCEEEEEECSS--CTTEEEEEE----TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-----SEEEEE
T ss_pred             cccceEEEEEccCC--CccEEEEec----CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-----CEEEEE
Confidence            37899999999997  248999999    7999999998654433221111226899999999999999     888888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | +|++||+.+++  ....+.+|.     ..|.+++|+| ++.+|++|+.|++|++||++ ++.+..+.+|...|.++
T Consensus        84 s~D~~v~~wd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~  154 (319)
T 3frx_A           84 SWDKTLRLWDVATGE--TYQRFVGHK-----SDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV  154 (319)
T ss_dssp             ETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred             eCCCEEEEEECCCCC--eeEEEccCC-----CcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence            7 5 99999999987  788888988     8999999998 99999999999999999996 45677788999999999


Q ss_pred             EecC-------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          173 SWGG-------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       173 ~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      +|++       +..|++++.|+.|++||+++.+.... +.  .|...|.+++|+| ++++|++++.|+. |++||++. .
T Consensus       155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~--~h~~~v~~~~~sp-~g~~l~s~~~dg~-i~iwd~~~-~  228 (319)
T 3frx_A          155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FI--GHNSNINTLTASP-DGTLIASAGKDGE-IMLWNLAA-K  228 (319)
T ss_dssp             EECCC------CCEEEEEETTSCEEEEETTTTEEEEE-EC--CCCSCEEEEEECT-TSSEEEEEETTCE-EEEEETTT-T
T ss_pred             EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-ec--CCCCcEEEEEEcC-CCCEEEEEeCCCe-EEEEECCC-C
Confidence            9983       33899999999999999998764333 22  3788999999998 9999999999999 99999987 5


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                      +++..+.. ...|.+++|+|++ .+|++++. +.+++|++..... ....   ..........+...+.+++|+|+|++|
T Consensus       229 ~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~-~~i~v~~~~~~~~-~~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l  301 (319)
T 3frx_A          229 KAMYTLSA-QDEVFSLAFSPNR-YWLAAATA-TGIKVFSLDPQYL-VDDL---RPEFAGYSKAAEPHAVSLAWSADGQTL  301 (319)
T ss_dssp             EEEEEEEC-CSCEEEEEECSSS-SEEEEEET-TEEEEEEETTEEE-EEEE---CCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred             cEEEEecC-CCcEEEEEEcCCC-CEEEEEcC-CCcEEEEeCcCee-eecc---CccccccccCcCcceeEEEECCCCCEE
Confidence            66777765 4689999999999 58888775 4599999986540 0000   000000112356779999999999999


Q ss_pred             EEEecCCeEEEEeC
Q 040307          326 IAIAFVNKLQLLKV  339 (339)
Q Consensus       326 ~~~~~d~~v~~w~v  339 (339)
                      ++++.|+.|++|++
T Consensus       302 ~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          302 FAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEeecCceEEEEEE
Confidence            99999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-44  Score=300.58  Aligned_cols=292  Identities=20%  Similarity=0.278  Sum_probs=225.8

Q ss_pred             eeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeec-CCCCceEEEEcCCCCCCC
Q 040307           10 GVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFD-HPYTPTNIAFFPSEETLN   87 (339)
Q Consensus        10 ~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~   87 (339)
                      .+..+. |..+|.+++|+|+     +||+|+    .|+.|+||++.........  .+... |...|.+++|+|++    
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~-----~las~~----~D~~i~lw~~~~~~~~~~~--~~~~~~h~~~v~~v~~sp~~----   70 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG-----ILATGS----TDRKIKLVSVKYDDFTLID--VLDETAHKKAIRSVAWRPHT----   70 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT-----EEEEEE----SSSCEEEEECSSSCCEEEE--EECTTCCCSCEEEEEECTTS----
T ss_pred             cceeeccCCCceeeeccCCC-----EEEEEc----CCCEEEEEEecCCCeEEEE--EEecCCccCCEEEEEECCCC----
Confidence            444444 7899999999987     899999    7999999888754333222  22233 99999999999999    


Q ss_pred             CCeEEEeC-C-cEEEEeecCC-----cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----
Q 040307           88 PDIVATSG-D-SLRLWEIHDD-----RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----  156 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----  156 (339)
                       .+||+++ | +|+||++...     .......+.+|.     ..|.+++|+| ++++|++|+.|++|++||++..    
T Consensus        71 -~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           71 -SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----NEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             -SEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred             -CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----CcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCe
Confidence             8999887 5 9999998642     223567788888     8999999998 9999999999999999999432    


Q ss_pred             eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc-eeeEEeCCCCCCCeEEEEEecCC-CCeEEEEeeCC
Q 040307          157 ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKER-STIIYENPVQDCPLLRLEWNKAD-PRFMATVGMDS  233 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~d~  233 (339)
                      +++..+.+|...|.+++|+ ++++|++++.|+.|++||.+.... ......  .|...|.+++|+|.. +.+|++++.|+
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN--GHEGTVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred             EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc--CCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence            4567788999999999999 789999999999999999887631 222233  478899999999832 66899999999


Q ss_pred             CeEEEEecCCCC-------CceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-
Q 040307          234 NKVVVLDIRFPT-------NPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-  304 (339)
Q Consensus       234 ~~i~i~d~~~~~-------~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-  304 (339)
                      . |++||++...       .....+.. |...|.+++|++++  +|++++.||.|+|||.....           .... 
T Consensus       222 ~-v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~-----------~~~~~  287 (330)
T 2hes_X          222 T-VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE-----------WKVFA  287 (330)
T ss_dssp             C-EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE-----------EEEEE
T ss_pred             e-EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc-----------eEEEe
Confidence            9 9999987532       12334444 88999999999764  89999999999999998653           1122 


Q ss_pred             -eeecccc-eeEEEEecC--CCCceEEEecCCeEEEEeC
Q 040307          305 -LCYQSMA-EINVVRWSP--LELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 -~~~~~~~-~i~~~~~~p--~~~~l~~~~~d~~v~~w~v  339 (339)
                       ....|.. .|++++|+|  ++..|++++.|+.|++|++
T Consensus       288 ~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          288 KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             EESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             ccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence             2245766 899999999  6778889999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-44  Score=308.02  Aligned_cols=291  Identities=15%  Similarity=0.160  Sum_probs=237.2

Q ss_pred             eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee-------------EeecCCCCceEEE
Q 040307           12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR-------------LIFDHPYTPTNIA   78 (339)
Q Consensus        12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~-------------~~~~~~~~v~~l~   78 (339)
                      ..+.|...|.+++|+|+   +++||+|+     ++.++||++............             ....+...|.+++
T Consensus        59 ~~~~h~~~V~~v~fspd---g~~la~g~-----~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  130 (393)
T 1erj_A           59 KSLDHTSVVCCVKFSND---GEYLATGC-----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC  130 (393)
T ss_dssp             EEEECSSCCCEEEECTT---SSEEEEEC-----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred             EecCCCCEEEEEEECCC---CCEEEEEc-----CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence            34568899999999999   99999988     789999887643321111000             0001233589999


Q ss_pred             EcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307           79 FFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE  156 (339)
Q Consensus        79 ~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  156 (339)
                      |+|++     ++|++|+ | .|++||+.+++  ....+.+|.     ..|.+++|+| ++++|++++.|++|++||++++
T Consensus       131 ~s~dg-----~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~-----~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          131 FSPDG-----KFLATGAEDRLIRIWDIENRK--IVMILQGHE-----QDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             ECTTS-----SEEEEEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTTT
T ss_pred             ECCCC-----CEEEEEcCCCeEEEEECCCCc--EEEEEccCC-----CCEEEEEEcC-CCCEEEEecCCCcEEEEECCCC
Confidence            99999     8899887 4 99999999886  777888888     8999999998 9999999999999999999999


Q ss_pred             eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEE----eCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          157 ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIY----ENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                      +....+. +...+.+++|+  ++++|++++.|+.|++||++++.....+.    ....|...|.+++|+| ++++|++++
T Consensus       198 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s  275 (393)
T 1erj_A          198 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGS  275 (393)
T ss_dssp             EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEe
Confidence            8877775 66789999999  57899999999999999999887544331    1134778999999998 899999999


Q ss_pred             eCCCeEEEEecCCCC-----------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          231 MDSNKVVVLDIRFPT-----------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       231 ~d~~~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                      .|+. |++||++...           .....+.+|...|.+++|+|++ .+|++|+.|+.|++||+..+.          
T Consensus       276 ~d~~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~----------  343 (393)
T 1erj_A          276 LDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN----------  343 (393)
T ss_dssp             TTSE-EEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC----------
T ss_pred             CCCE-EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCe----------
Confidence            9999 9999997532           2345778899999999999999 599999999999999999877          


Q ss_pred             cccceeeecccceeEEEEecC------CCCceEEEecCCeEEEEeC
Q 040307          300 DVEPELCYQSMAEINVVRWSP------LELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~p------~~~~l~~~~~d~~v~~w~v  339 (339)
                        ......+|...|.+++|+|      ++..+++++.|++|++|++
T Consensus       344 --~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          344 --PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             --EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             --EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence              2335568999999999987      5667889999999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.2e-43  Score=294.30  Aligned_cols=290  Identities=16%  Similarity=0.183  Sum_probs=249.0

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +.+....|..+|.+++|+|+   +++|++++     ||.|++|++................|...|.+++|+|++     
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~---~~~l~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----  109 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNP---TRHVYTGG-----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----  109 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSS---SSEEEEEC-----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-----
T ss_pred             ccceeccCCCceEEEEEecC---CcEEEEcC-----CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-----
Confidence            44556678999999999999   99999988     899999998765433332111112789999999999999     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      ++|++++ + .|++|++.+++......+..|.     ..|.+++|+| ++++|++++.||.|++||+++++.+..+..|.
T Consensus       110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~  183 (337)
T 1gxr_A          110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             SEEEEEESSSEEEEEECCCC--EEEEEEECSS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CEEEEEcCCCcEEEEECCCCCcceeeecccCC-----CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence            7888876 4 9999999988755667777777     8999999998 99999999999999999999999999999999


Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      ..+.+++|+ ++++|++++.|+.|++||+++.+......    +...+.+++|+| +++++++++.++. |++||++.. 
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~~l~~~~~~~~-i~~~~~~~~-  256 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGEWLAVGMESSN-VEVLHVNKP-  256 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTSS-
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECC-CCCEEEEEcCCCc-EEEEECCCC-
Confidence            999999999 78899999999999999999887544432    457899999998 8999999999999 999999873 


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW  325 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  325 (339)
                      + ...+..|...|.+++|+|++ .+|++++.||.|++||+...+             ......|...|.+++|+|+++.+
T Consensus       257 ~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          257 D-KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA-------------SIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             C-EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------------EEEEEECSSCEEEEEECTTSCEE
T ss_pred             C-eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCe-------------EEEEecCCCcEEEEEECCCCCEE
Confidence            3 46778899999999999999 699999999999999999887             45566788999999999999999


Q ss_pred             EEEecCCeEEEEeC
Q 040307          326 IAIAFVNKLQLLKV  339 (339)
Q Consensus       326 ~~~~~d~~v~~w~v  339 (339)
                      ++++.|+.|++|++
T Consensus       322 ~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          322 VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEecCCCeEEEEEE
Confidence            99999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-42  Score=293.93  Aligned_cols=295  Identities=15%  Similarity=0.214  Sum_probs=228.7

Q ss_pred             eccCCeeEEEe-----ee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcc--cceeeEeecCCCCceEEEEcCCCCCC
Q 040307           15 MAQWPISTVAW-----SV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF--SADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus        15 ~~~~~v~~i~~-----sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      .|.++|++++|     +| +   +++||+|+    .|++|+||++.......  ........+|...|.+++|+|++   
T Consensus        19 gH~~~V~~~~~~~s~~~~~d---~~~l~sgs----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---   88 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENED---SPVLISGS----RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---   88 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCC---CCEEEEEE----TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---
T ss_pred             cchhhhhheeeEEEeecCCC---CCEEEEEc----CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---
Confidence            37899999999     66 6   89999999    79999999987543211  11111226899999999999999   


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--  162 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--  162 (339)
                        .++++++ | +|++||+.+++  ....+.+|.     ..|.+++|+| ++++|++++.|+.|++||+.... ....  
T Consensus        89 --~~l~s~s~D~~v~lwd~~~~~--~~~~~~~h~-----~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~  157 (343)
T 2xzm_R           89 --CFAISSSWDKTLRLWDLRTGT--TYKRFVGHQ-----SEVYSVAFSP-DNRQILSAGAEREIKLWNILGEC-KFSSAE  157 (343)
T ss_dssp             --TEEEEEETTSEEEEEETTSSC--EEEEEECCC-----SCEEEEEECS-STTEEEEEETTSCEEEEESSSCE-EEECCT
T ss_pred             --CEEEEEcCCCcEEEEECCCCc--EEEEEcCCC-----CcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCc-eeeeec
Confidence              8988887 5 99999999887  778888888     8999999998 99999999999999999997443 3233  


Q ss_pred             -eccCCceeEEEecC-C----------cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          163 -VAHDREVYDISWGG-F----------NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       163 -~~~~~~v~~~~~~~-~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                       ..|...|.+++|++ +          .+|++++.|+.|++||.+. + .......  |...|.+++|+| ++++|++++
T Consensus       158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~-~~~~~~~--h~~~v~~~~~s~-~g~~l~sgs  232 (343)
T 2xzm_R          158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q-IRYTFKA--HESNVNHLSISP-NGKYIATGG  232 (343)
T ss_dssp             TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E-EEEEEEC--CSSCEEEEEECT-TSSEEEEEE
T ss_pred             ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c-eeEEEcC--ccccceEEEECC-CCCEEEEEc
Confidence             26888999999993 3          6899999999999999432 2 2223333  778999999998 999999999


Q ss_pred             eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC-CCCCCCcccceeeecc
Q 040307          231 MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG-NGGPSGDVEPELCYQS  309 (339)
Q Consensus       231 ~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~  309 (339)
                      .|+. |++||++....+...+. +...|.+++|+|++ .++++ +.|+.|++|++......+. ..............+|
T Consensus       233 ~dg~-v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (343)
T 2xzm_R          233 KDKK-LLIWDILNLTYPQREFD-AGSTINQIAFNPKL-QWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK  308 (343)
T ss_dssp             TTCE-EEEEESSCCSSCSEEEE-CSSCEEEEEECSSS-CEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred             CCCe-EEEEECCCCcccceeec-CCCcEEEEEECCCC-CEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence            9999 99999965455555553 45679999999998 46654 4588899999987651100 0000000000011257


Q ss_pred             cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          310 MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...|.+++|+|+++.|++++.||.|++|++
T Consensus       309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          309 NPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             CCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             CCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence            788999999999999999999999999984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-42  Score=288.86  Aligned_cols=243  Identities=16%  Similarity=0.185  Sum_probs=214.7

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|.+++|+|++     .+|++++ | .|++||+.+++  ....+..|.     .+|.+++|+| ++++|++|+.|
T Consensus        10 ~~h~~~V~~~~fsp~~-----~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~s~s~d   76 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTE-----PWVLTTLYSGRVELWNYETQV--EVRSIQVTE-----TPVRAGKFIA-RKNWIIVGSDD   76 (304)
T ss_dssp             EEECSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEEEG-GGTEEEEEETT
T ss_pred             cCCCCceEEEEECCCC-----CEEEEEcCCCcEEEEECCCCc--eeEEeeccC-----CcEEEEEEeC-CCCEEEEECCC
Confidence            6899999999999999     8888887 5 99999999886  778888887     8999999998 99999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +.|++||+++++.+..+.+|...|.+++|+ ++.+|++++.|++|++||+++.......+..  |...|.+++|+|.++.
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC--CCSCEEEEEECTTCTT
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc--cCCcEEEEEECCCCCC
Confidence            999999999999999999999999999999 7889999999999999999987655444544  7889999999997789


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc--CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP--LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                      +|++|+.|+. |++||++...........|...+..+.|+|  ++ .+|++++.|+.|++||++...            .
T Consensus       155 ~l~sgs~D~~-v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~------------~  220 (304)
T 2ynn_A          155 TFASGCLDRT-VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS------------C  220 (304)
T ss_dssp             EEEEEETTSE-EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTE------------E
T ss_pred             EEEEEeCCCe-EEEEECCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCc------------c
Confidence            9999999999 999999875444444456678899999987  55 599999999999999998876            2


Q ss_pred             ceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          303 PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .....+|...|.+++|+|+++.|++++.|++|++|++
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            3356689999999999999998999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.7e-42  Score=311.18  Aligned_cols=289  Identities=14%  Similarity=0.203  Sum_probs=238.1

Q ss_pred             ceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      +.+..+ .|...|++++|+|+   +++||+|+    .|++|+||++.........  .+ ..|.+.|.+++|+|++    
T Consensus        50 ~~~~~~~~h~~~v~~~~~spd---g~~lasg~----~d~~v~lWd~~~~~~~~~~--~~-~~~~~~v~~v~fs~dg----  115 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPS---GYYCASGD----VHGNVRIWDTTQTTHILKT--TI-PVFSGPVKDISWDSES----  115 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTT---SSEEEEEE----TTSEEEEEESSSTTCCEEE--EE-ECSSSCEEEEEECTTS----
T ss_pred             ccCeEecCCCCceEEEEECCC---CcEEEEEe----CCCCEEEeECCCCcceeeE--ee-cccCCceEEEEECCCC----
Confidence            334444 47889999999999   99999999    7999999887643333222  33 5799999999999999    


Q ss_pred             CCeEEEeCC------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeee
Q 040307           88 PDIVATSGD------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        88 ~~~la~~~~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                       +.|+++++      .|++||  .++  ....+.+|.     ..|++++|+| ++. .|++|+.|++|++||.++++...
T Consensus       116 -~~l~~~~~~~~~~~~v~~wd--~~~--~~~~l~gh~-----~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~  184 (611)
T 1nr0_A          116 -KRIAAVGEGRERFGHVFLFD--TGT--SNGNLTGQA-----RAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKS  184 (611)
T ss_dssp             -CEEEEEECCSSCSEEEEETT--TCC--BCBCCCCCS-----SCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred             -CEEEEEECCCCceeEEEEee--CCC--CcceecCCC-----CCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEee
Confidence             77777652      466666  444  556677887     8999999999 665 69999999999999999999889


Q ss_pred             eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307          161 QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEWNKADPRFMATVGMDSNK  235 (339)
Q Consensus       161 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~  235 (339)
                      .+.+|...|.+++|+ ++++|++++.|++|++||+++++....+..    ...|...|.+++|+| ++++|++++.|+. 
T Consensus       185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~-  262 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKT-  262 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSE-
T ss_pred             eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCe-
Confidence            999999999999999 799999999999999999988875444322    014788999999998 9999999999999 


Q ss_pred             EEEEecCCCCC------------------------------------------ceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307          236 VVVLDIRFPTN------------------------------------------PVVVLSKHEGSVNGISWAPLYGRRLCS  273 (339)
Q Consensus       236 i~i~d~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~  273 (339)
                      |++||++....                                          +...+.+|...|++++|+|++ ++|++
T Consensus       263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s  341 (611)
T 1nr0_A          263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFS  341 (611)
T ss_dssp             EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred             EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEE
Confidence            99999976221                                          123456799999999999999 69999


Q ss_pred             EeCCCcEEEEEecCCCCCCCCCCCCCcccceee--ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          274 VADDSRALIWEVVGPGYRSGNGGPSGDVEPELC--YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       274 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++.|+.|++||+....             ....  ..|...|.+++|++++ .+++++.|+.+++|++
T Consensus       342 ~s~D~~v~~Wd~~~~~-------------~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~  395 (611)
T 1nr0_A          342 ADAEGHINSWDISTGI-------------SNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPA  395 (611)
T ss_dssp             EETTSCEEEEETTTCC-------------EEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECS
T ss_pred             EeCCCcEEEEECCCCc-------------eeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeec
Confidence            9999999999998876             2222  4688899999999877 5889999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-42  Score=314.03  Aligned_cols=290  Identities=16%  Similarity=0.217  Sum_probs=234.1

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      .+.+.+++|+|+   |++||+++     ++.|+||++....  ...  .+ .+|...|++++|+|++     ++||+|+ 
T Consensus        18 ~g~~~~~~~spd---g~~l~~~~-----~~~v~l~~~~~~~--~~~--~~-~~h~~~v~~~~~spdg-----~~lasg~~   79 (611)
T 1nr0_A           18 RGTAVVLGNTPA---GDKIQYCN-----GTSVYTVPVGSLT--DTE--IY-TEHSHQTTVAKTSPSG-----YYCASGDV   79 (611)
T ss_dssp             TTCCCCCEECTT---SSEEEEEE-----TTEEEEEETTCSS--CCE--EE-CCCSSCEEEEEECTTS-----SEEEEEET
T ss_pred             cCceeEEeeCCC---CCEEEeCC-----CCEEEEecCCCcc--cCe--Ee-cCCCCceEEEEECCCC-----cEEEEEeC
Confidence            578899999999   99999998     6799998876332  221  22 6899999999999999     8999998 


Q ss_pred             C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeeeeeeeccCCcee
Q 040307           96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      | +|+|||+.+++......+.+|.     .+|.+++|+| ++++|++++.+    +.|++||  .++....+.+|...|+
T Consensus        80 d~~v~lWd~~~~~~~~~~~~~~~~-----~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~  151 (611)
T 1nr0_A           80 HGNVRIWDTTQTTHILKTTIPVFS-----GPVKDISWDS-ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMN  151 (611)
T ss_dssp             TSEEEEEESSSTTCCEEEEEECSS-----SCEEEEEECT-TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEE
T ss_pred             CCCEEEeECCCCcceeeEeecccC-----CceEEEEECC-CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCce
Confidence            4 9999999766544566788887     8999999998 99999998875    4788887  4566778889999999


Q ss_pred             EEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          171 DISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       171 ~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      +++|+ ++. .|++++.|++|++||.+..+.... +.  .|...|.+++|+| ++++|++++.|+. |++||+.. ++.+
T Consensus       152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~-l~--~H~~~V~~v~fsp-dg~~las~s~D~~-i~lwd~~~-g~~~  225 (611)
T 1nr0_A          152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-FG--EHTKFVHSVRYNP-DGSLFASTGGDGT-IVLYNGVD-GTKT  225 (611)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-CCEE
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee-ec--cccCceEEEEECC-CCCEEEEEECCCc-EEEEECCC-CcEe
Confidence            99999 444 699999999999999887653332 33  4788999999999 8999999999999 99999987 5566


Q ss_pred             EEEe-------cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC-CCCCC-----------------------
Q 040307          249 VVLS-------KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS-GNGGP-----------------------  297 (339)
Q Consensus       249 ~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~-----------------------  297 (339)
                      ..+.       +|.+.|.+++|+|++ ++|++++.|++|++||+...+... .....                       
T Consensus       226 ~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  304 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  304 (611)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             eeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence            6663       799999999999999 699999999999999998654100 00000                       


Q ss_pred             -------CCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          298 -------SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       298 -------~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                             ..........+|...|++++|+|+++.|++++.|++|++|++
T Consensus       305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~  353 (611)
T 1nr0_A          305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI  353 (611)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence                   000001133478899999999999999999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=286.54  Aligned_cols=252  Identities=16%  Similarity=0.258  Sum_probs=207.4

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      ...+.+..+|.+++|+|+   +. |++|+    .||.|+||+++........... ..+|.+.|++++|+|++     ++
T Consensus        76 ~~~~~~~~~v~~~~~s~d---~~-l~~~s----~dg~v~lWd~~~~~~~~~~~~~-~~~H~~~V~~v~~spdg-----~~  141 (344)
T 4gqb_B           76 SAGVQTEAGVADLTWVGE---RG-ILVAS----DSGAVELWELDENETLIVSKFC-KYEHDDIVSTVSVLSSG-----TQ  141 (344)
T ss_dssp             SEEEEESSCEEEEEEETT---TE-EEEEE----TTSEEEEEEECTTSSCEEEEEE-EECCSSCEEEEEECTTS-----SE
T ss_pred             eeeeccCCCEEEEEEeCC---Ce-EEEEE----CCCEEEEEeccCCCceeEeecc-ccCCCCCEEEEEECCCC-----CE
Confidence            344556788999999999   64 66777    6999999988765544333112 25899999999999999     89


Q ss_pred             EEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--ccC
Q 040307           91 VATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--AHD  166 (339)
Q Consensus        91 la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~  166 (339)
                      |++|+ | +|++||+.+++  ++..+.+|.     ..|++++|+|.+..+|++++.|++|++||+++++....+.  .+.
T Consensus       142 l~sgs~d~~i~iwd~~~~~--~~~~~~~h~-----~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  214 (344)
T 4gqb_B          142 AVSGSKDICIKVWDLAQQV--VLSSYRAHA-----AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG  214 (344)
T ss_dssp             EEEEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----C
T ss_pred             EEEEeCCCeEEEEECCCCc--EEEEEcCcC-----CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceee
Confidence            99987 4 99999999987  888999998     9999999998444689999999999999999998777763  455


Q ss_pred             CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..+.+++|+  ++++|++|+.|+.|++||+++++....+ ..  |...|.+++|+|+..++|++|+.|+. |+|||++. 
T Consensus       215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~--h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-  289 (344)
T 4gqb_B          215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AV--HSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-  289 (344)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-EC--CSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-
T ss_pred             ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cC--CCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-
Confidence            678999999  4678999999999999999988755443 33  77899999999954578999999999 99999986 


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++ +..+.+|.+.|++++|+|+++.+|++++.|++|++|++....
T Consensus       290 ~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          290 SE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             Cc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            33 567889999999999999987688899999999999998765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-41  Score=305.37  Aligned_cols=274  Identities=19%  Similarity=0.305  Sum_probs=236.2

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|.+++|+|+   ++.|++++    .|+.|++|+.+.  ....   . ...|...|.+++|+|++     ++|+++
T Consensus       301 ~h~~~v~~~~~~~~---~~~l~t~~----~d~~i~~w~~~~--~~~~---~-~~~~~~~v~~~~~s~~g-----~~l~~~  362 (577)
T 2ymu_A          301 GHSSSVWGVAFSPD---GQTIASAS----DDKTVKLWNRNG--QHLQ---T-LTGHSSSVWGVAFSPDG-----QTIASA  362 (577)
T ss_dssp             CCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETTS--CEEE---E-ECCCSSCEEEEEECTTS-----SEEEEE
T ss_pred             cCCCCeEEEEECCC---CCEEEEEe----CCCeEEEEeCCC--CeeE---E-EeCCCCCEEEEEECCCC-----CEEEEE
Confidence            36789999999999   99999999    799999987643  2222   2 26789999999999999     888888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + + .|++|+... +  ....+.+|.     ..|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus       363 ~~dg~v~~~~~~~-~--~~~~~~~~~-----~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~  432 (577)
T 2ymu_A          363 SDDKTVKLWNRNG-Q--LLQTLTGHS-----SSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV  432 (577)
T ss_dssp             ETTSEEEEEETTC-C--EEEEEECCS-----SCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred             eCCCEEEEEcCCC-C--EEEEecCCC-----CCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence            7 4 999999643 3  677888887     8999999998 9999999999999999996 567788888999999999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      +|+ ++.+|++++.|+.|++||..... .. ....  |...+.+++|+| ++++|++++.|+. |++||..  ++.+..+
T Consensus       433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~-~~-~~~~--~~~~v~~~~~sp-d~~~las~~~d~~-i~iw~~~--~~~~~~~  504 (577)
T 2ymu_A          433 AFSPDDQTIASASDDKTVKLWNRNGQL-LQ-TLTG--HSSSVRGVAFSP-DGQTIASASDDKT-VKLWNRN--GQLLQTL  504 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCE-EE-EEEC--CSSCEEEEEECT-TSCEEEEEETTSE-EEEEETT--SCEEEEE
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCE-EE-EEcC--CCCCEEEEEEcC-CCCEEEEEeCCCE-EEEEcCC--CCEEEEE
Confidence            999 78999999999999999975432 22 2333  678999999998 9999999999998 9999964  5778899


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      .+|...|++++|+|++ ++|++++.||.|+|||... +            ......+|...|++++|+|++++|++++.|
T Consensus       505 ~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~~-~------------~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-Q------------LLQTLTGHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             ECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTS-C------------EEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCCC-C------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9999999999999999 6999999999999999643 3            134566899999999999999999999999


Q ss_pred             CeEEEEe
Q 040307          332 NKLQLLK  338 (339)
Q Consensus       332 ~~v~~w~  338 (339)
                      ++|++|+
T Consensus       571 ~~i~~Wd  577 (577)
T 2ymu_A          571 KTVKLWN  577 (577)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-42  Score=304.87  Aligned_cols=320  Identities=15%  Similarity=0.108  Sum_probs=231.1

Q ss_pred             CCceeeeeeccCCeeEEEeeecCC------cccEEEEeeec---------------cccCCeEEEEecCCCCCcccceee
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHD------RKSRLAVGSFL---------------EDYSNKIELVNFNPETSDFSADNR   65 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~------~~~~la~g~~~---------------~~~~~~i~i~~~~~~~~~~~~~~~   65 (339)
                      +.+....+.+.+.|.+++|+|+..      .+++||+|+..               +..|++|+||+++...........
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~  202 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT  202 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred             CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence            455566777899999999999931      01788887631               235789999998765433221112


Q ss_pred             EeecCCCCceEEEEcCCCCC-CCCCeEEEeC-C-cEEEEeecCCcce---------eEEEeecCCCccCCCCEEEEEEcC
Q 040307           66 LIFDHPYTPTNIAFFPSEET-LNPDIVATSG-D-SLRLWEIHDDRTE---------LKSLLNSNKTSEFSSAITSFDWAG  133 (339)
Q Consensus        66 ~~~~~~~~v~~l~~~~~~~~-~~~~~la~~~-~-~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~  133 (339)
                      + ..|.+.|.+++|+|++.. .+..+||+++ | +|+|||+..+...         +...+.+|.     ..|++++|+|
T Consensus       203 l-~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-----~~v~sv~~s~  276 (524)
T 2j04_B          203 I-VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-----SLITTFDFLS  276 (524)
T ss_dssp             E-EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-----TCEEEEEESS
T ss_pred             E-EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-----CCEEEEEecC
Confidence            2 457889999999997210 0016899887 5 9999999876411         223566776     8999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEE--Eec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCCC
Q 040307          134 FDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDI--SWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENPV  208 (339)
Q Consensus       134 ~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~--~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  208 (339)
                       + ..|++|+.||+|++||+++++ +...+.+|...|+++  .|+ ++ ++|++++.|++|++||+++.+....+... .
T Consensus       277 -~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~-~  353 (524)
T 2j04_B          277 -P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR-F  353 (524)
T ss_dssp             -S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE-C
T ss_pred             -C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc-c
Confidence             4 589999999999999998764 455678999999999  456 45 79999999999999999987754443322 1


Q ss_pred             CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      ....+.+++|+| +++.+++++.|+. |++||++. ...+..+.+|...|++|+|+|++ .+|++|+.||+|++||+...
T Consensus       354 ~~~~v~~v~fsp-~~~~l~s~~~d~t-v~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          354 RGSNLVPVVYCP-QIYSYIYSDGASS-LRAVPSRA-AFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SCCSCCCEEEET-TTTEEEEECSSSE-EEEEETTC-TTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSS
T ss_pred             ccCcccceEeCC-CcCeEEEeCCCCc-EEEEECcc-cccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHh
Confidence            123578999999 7888999999998 99999998 55667888999999999999999 59999999999999997543


Q ss_pred             CCCC---------------CCCCCCC-----------------cccceeeecccceeEEEEecCCCC---ceEEEecCCe
Q 040307          289 GYRS---------------GNGGPSG-----------------DVEPELCYQSMAEINVVRWSPLEL---DWIAIAFVNK  333 (339)
Q Consensus       289 ~~~~---------------~~~~~~~-----------------~~~~~~~~~~~~~i~~~~~~p~~~---~l~~~~~d~~  333 (339)
                      ....               ..-.+.+                 ........+|...|.+|+|+|+++   .+++++.||.
T Consensus       430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~  509 (524)
T 2j04_B          430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL  509 (524)
T ss_dssp             TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred             hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence            2100               0001111                 111224456888999999999965   5666778899


Q ss_pred             EEEEeC
Q 040307          334 LQLLKV  339 (339)
Q Consensus       334 v~~w~v  339 (339)
                      |+||++
T Consensus       510 vrlw~l  515 (524)
T 2j04_B          510 LTLEYL  515 (524)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.4e-41  Score=282.48  Aligned_cols=294  Identities=15%  Similarity=0.189  Sum_probs=232.3

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.++|++|+|+|+  .+++||+|+    .|++|+||++...............+|...|.+++|+|++     ++|+++
T Consensus        36 GH~~~V~~v~~sp~--~~~~l~S~s----~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-----~~l~s~  104 (340)
T 4aow_A           36 GHNGWVTQIATTPQ--FPDMILSAS----RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-----QFALSG  104 (340)
T ss_dssp             CCSSCEEEEEECTT--CTTEEEEEE----TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-----SEEEEE
T ss_pred             CccCCEEEEEEeCC--CCCEEEEEc----CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-----CEEEEE
Confidence            38899999999997  357999999    7999999998765543322112226899999999999999     888888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeccCCceeE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQLVAHDREVYD  171 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~v~~  171 (339)
                      + | .|++|+.....  .......+.     ..+..+.+++ ++.+|++++.|+.+++||+..... .....+|...+..
T Consensus       105 ~~d~~i~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~  176 (340)
T 4aow_A          105 SWDGTLRLWDLTTGT--TTRRFVGHT-----KDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC  176 (340)
T ss_dssp             ETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred             cccccceEEeecccc--eeeeecCCC-----CceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence            7 5 99999998876  555555555     7888999997 899999999999999999976653 3445678999999


Q ss_pred             EEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          172 ISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       172 ~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      ++|+ +  ..++++++.|+.|++||+++.+.... ..  .|...|.+++|+| ++++|++++.|+. |++||++. .+++
T Consensus       177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~--~h~~~v~~~~~s~-~~~~l~s~s~Dg~-i~iwd~~~-~~~~  250 (340)
T 4aow_A          177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-HI--GHTGYLNTVTVSP-DGSLCASGGKDGQ-AMLWDLNE-GKHL  250 (340)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTCE-EEEEETTT-TEEE
T ss_pred             eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-ec--CCCCcEEEEEECC-CCCEEEEEeCCCe-EEEEEecc-Ccee
Confidence            9998 3  56789999999999999998874443 33  3778999999998 8999999999999 99999987 5566


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI  328 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  328 (339)
                      ..+.. ...|.++.|+|++  .+++++.|+.|++||++.......   ............|...|++++|+|++++|+++
T Consensus       251 ~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  324 (340)
T 4aow_A          251 YTLDG-GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDE---LKQEVISTSSKAEPPQCTSLAWSADGQTLFAG  324 (340)
T ss_dssp             EEEEC-SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEE---ECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred             eeecC-CceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEe---ccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence            66665 5689999999987  466677799999999987540000   00000011234678899999999999999999


Q ss_pred             ecCCeEEEEeC
Q 040307          329 AFVNKLQLLKV  339 (339)
Q Consensus       329 ~~d~~v~~w~v  339 (339)
                      +.||.|+||++
T Consensus       325 s~Dg~v~iW~~  335 (340)
T 4aow_A          325 YTDNLVRVWQV  335 (340)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eCCCEEEEEeC
Confidence            99999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-43  Score=302.69  Aligned_cols=309  Identities=13%  Similarity=0.188  Sum_probs=242.5

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC-CCCCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS-EETLNP   88 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~~~   88 (339)
                      .+..+.+..+|.+++|+|+   +.+|++|+    .|+.|++|++............+ ..|...|.+++|+|+ +     
T Consensus        60 ~~~~~~~~~~v~~~~~s~~---~~~l~~~~----~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-----  126 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSHN---NKIIAGAL----DNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQD-----  126 (416)
T ss_dssp             CSCCCCCSSCEEEEEECSS---SSCEEEEE----SSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSST-----
T ss_pred             EEEEEecCCceEEEEECCC---CCeEEEEc----cCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCC-----
Confidence            4555667889999999999   99999999    79999998887632221111122 579999999999998 6     


Q ss_pred             CeEEEeC-C-cEEEEeecCCc------ce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 040307           89 DIVATSG-D-SLRLWEIHDDR------TE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE  159 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~------~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  159 (339)
                      .+|++++ + .|++||+.+.+      .. ....+..|.     ..|.+++|+|..+.+|++++.|+.|++||+++++.+
T Consensus       127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV-----DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV  201 (416)
T ss_dssp             TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS-----CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCccccccccccccccccCCC-----CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence            7888887 4 99999998764      11 112234455     899999999833789999999999999999999988


Q ss_pred             eeeecc------CCceeEEEec-CC-cEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          160 TQLVAH------DREVYDISWG-GF-NVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       160 ~~~~~~------~~~v~~~~~~-~~-~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      ..+..+      ...|.+++|+ ++ .++++++.|+   .|++||+++......... ..|...+.+++|+|.++.+|++
T Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEE
T ss_pred             eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEE
Confidence            888766      7889999999 43 6899999998   999999998754443333 0367899999999878999999


Q ss_pred             EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC--CCCcccce--
Q 040307          229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG--PSGDVEPE--  304 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~--  304 (339)
                      ++.|+. |++||++. .+++..+..|...|.+++|+|+++.+|++++.|+.|++||+...........  ......+.  
T Consensus       281 ~~~dg~-v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  358 (416)
T 2pm9_A          281 SGRDNT-VLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDF  358 (416)
T ss_dssp             EESSSE-EEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------------
T ss_pred             EeCCCC-EEEeeCCC-CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccc
Confidence            999998 99999987 6788999999999999999999856999999999999999988762111000  00000000  


Q ss_pred             -------------------eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 -------------------LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 -------------------~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                                         ....|..++.+++|+|+|+.+++++.|+.|+||++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          359 WNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             --------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             cccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence                               00115677889999999997778889999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=289.23  Aligned_cols=296  Identities=16%  Similarity=0.253  Sum_probs=231.9

Q ss_pred             eccCCeeEEEeeecCCccc-EEEEeeecccc---CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC---CCCCC
Q 040307           15 MAQWPISTVAWSVRHDRKS-RLAVGSFLEDY---SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS---EETLN   87 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~-~la~g~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~~   87 (339)
                      .|..+|.+++|+|+   +. ++++|+    .   |+.|+||+++......    ....+|...|.+++|+|+   +    
T Consensus        16 ~h~~~v~~~~~~p~---~~~l~~~~s----~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~----   80 (357)
T 3i2n_A           16 GFNYTVFDCKWVPC---SAKFVTMGN----FARGTGVIQLYEIQHGDLKL----LREIEKAKPIKCGTFGATSLQQ----   80 (357)
T ss_dssp             ECSSCEEEEEECTT---SSEEEEEEC------CCCEEEEEEEECSSSEEE----EEEEEESSCEEEEECTTCCTTT----
T ss_pred             CCCCceEEEEEcCC---CceEEEecC----ccCCCcEEEEEeCCCCcccc----eeeecccCcEEEEEEcCCCCCC----
Confidence            37899999999999   75 555665    4   8999998887543222    223578999999999998   5    


Q ss_pred             CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEE------cCCCCCEEEEEeCCCeEEEEECCCCe-e
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDW------AGFDTRRVATCSVDTTCVIWDIDREI-L  158 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~~~~d~~v~i~d~~~~~-~  158 (339)
                       .+|++++ + .|++|++.+++ .....+.+|.     ..|.+++|      +| ++++|++++.||.|++||+++++ .
T Consensus        81 -~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~  152 (357)
T 3i2n_A           81 -RYLATGDFGGNLHIWNLEAPE-MPVYSVKGHK-----EIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDP  152 (357)
T ss_dssp             -CCEEEEETTSCEEEECTTSCS-SCSEEECCCS-----SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred             -ceEEEecCCCeEEEEeCCCCC-ccEEEEEecc-----cceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCc
Confidence             6777776 5 99999998875 2556777887     89999965      55 88999999999999999999886 6


Q ss_pred             eeeeeccCC----ceeEEE----ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC--CCCeEE
Q 040307          159 ETQLVAHDR----EVYDIS----WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA--DPRFMA  227 (339)
Q Consensus       159 ~~~~~~~~~----~v~~~~----~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~  227 (339)
                      +..+..|..    .+.+++    |+ ++++|++++.|+.|++||+++.+....  .  .+...+.+++|+|.  ++.+|+
T Consensus       153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--T--NIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--E--ECSSCEEEEEESCSSSSCCEEE
T ss_pred             ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--c--CCCCceEEEEcCCCCCCCCEEE
Confidence            677765554    789998    56 789999999999999999999875322  2  25679999999985  688999


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEE-----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC---CCCC--
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVL-----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG---NGGP--  297 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~--  297 (339)
                      +++.++. |++||++. ..+...+     .+|...|.+++|+|++..+|++++.||.|++||+........   .+..  
T Consensus       229 ~~~~dg~-i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~  306 (357)
T 3i2n_A          229 ATSLEGK-FHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG  306 (357)
T ss_dssp             EEESTTE-EEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred             EECCCCe-EEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence            9999998 99999987 3344444     389999999999999844899999999999999997652100   0000  


Q ss_pred             -CCccc-ceeeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307          298 -SGDVE-PELCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV  339 (339)
Q Consensus       298 -~~~~~-~~~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v  339 (339)
                       .+... ......|...|++++|+|+++.++ +++.|+.|++|++
T Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          307 VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence             00111 224457889999999999999988 7899999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-41  Score=282.57  Aligned_cols=246  Identities=16%  Similarity=0.276  Sum_probs=214.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|++++|+|++. .+..+|++|+ | +|+||++...+......+.+|.     ..|.+++|+| ++.++++++.|
T Consensus        29 ~~H~~~V~~v~~~~~~~-~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~-----~~v~~~~~~~-~~~~l~s~s~D  101 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKK-ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ-----LGVVSVDISH-TLPIAASSSLD  101 (321)
T ss_dssp             TSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECS-SSSEEEEEETT
T ss_pred             ccCCCcEEEEEEecCCC-CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC-----CCEEEEEECC-CCCEEEEEeCC
Confidence            58999999999998631 0116888887 5 9999999887655666788888     8999999998 89999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      ++|++||+++++.+..+..+...+.+++|+ ++++|++++.|+.|++||+++.+....+. .  +...+.+++|+| +++
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~--~~~~v~~~~~sp-dg~  177 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-T--RGKFILSIAYSP-DGK  177 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-C--SSSCEEEEEECT-TSS
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-C--CCceEEEEEECC-CCC
Confidence            999999999999999998899999999999 79999999999999999999887544433 2  567899999998 999


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      +|++++.|+. |++||++. .+++..+.+|...|.+++|+|++ .+|++++.|+.|++||++...            ...
T Consensus       178 ~lasg~~dg~-i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~------------~~~  242 (321)
T 3ow8_A          178 YLASGAIDGI-INIFDIAT-GKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHAN------------LAG  242 (321)
T ss_dssp             EEEEEETTSC-EEEEETTT-TEEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCC------------EEE
T ss_pred             EEEEEcCCCe-EEEEECCC-CcEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcc------------eeE
Confidence            9999999999 99999987 67788899999999999999999 699999999999999998876            233


Q ss_pred             eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...+|...|.+++|+|+++.|++++.|++|++|++
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~  277 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV  277 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            55679999999999999999999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.7e-41  Score=286.66  Aligned_cols=298  Identities=14%  Similarity=0.160  Sum_probs=233.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |..+|.+++|+|+   +++||+|+    .++.|++|+++........  .+ ..|...|.+++|+|++     ++|++++
T Consensus         7 ~~~~i~~~~~s~~---~~~l~~~~----~d~~v~i~~~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~-----~~l~~~~   71 (372)
T 1k8k_C            7 LVEPISCHAWNKD---RTQIAICP----NNHEVHIYEKSGNKWVQVH--EL-KEHNGQVTGVDWAPDS-----NRIVTCG   71 (372)
T ss_dssp             CSSCCCEEEECTT---SSEEEEEC----SSSEEEEEEEETTEEEEEE--EE-ECCSSCEEEEEEETTT-----TEEEEEE
T ss_pred             cCCCeEEEEECCC---CCEEEEEe----CCCEEEEEeCCCCcEEeee--ee-cCCCCcccEEEEeCCC-----CEEEEEc
Confidence            6789999999999   99999998    7999999887654311222  33 5799999999999999     8888877


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---ee-eeeccCCce
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL---ET-QLVAHDREV  169 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~-~~~~~~~~v  169 (339)
                       + .|++|++++++......+..|.     ..|.+++|+| ++++|++++.|+.|++||++.++.   .. ....|...|
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i  145 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILRIN-----RAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  145 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCS-----SCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             CCCeEEEEECCCCeeeeeEEeecCC-----CceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence             4 9999999888644444555666     8999999998 899999999999999999987762   22 335688999


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCc---------------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKE---------------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      .+++|+ ++++|++++.|+.|++||++...               ..........|...+.+++|+| ++++|++++.|+
T Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  224 (372)
T 1k8k_C          146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDS  224 (372)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTT
T ss_pred             eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCC
Confidence            999999 78899999999999999975211               0112222224778999999998 889999999999


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC--CCC---CCCCC-------------
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG--PGY---RSGNG-------------  295 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~--~~~---~~~~~-------------  295 (339)
                      . |++||++. .+++..+..|...|.+++|+|++ .+|+++ .|+.|++|++..  +.-   .....             
T Consensus       225 ~-i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (372)
T 1k8k_C          225 T-VCLADADK-KMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  300 (372)
T ss_dssp             E-EEEEEGGG-TTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             E-EEEEECCC-CceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence            8 99999987 67888999999999999999998 577777 899999999988  210   00000             


Q ss_pred             -----CCCCccc------ceeeecccceeEEEEec-CCC---CceEEEecCCeEEEEeC
Q 040307          296 -----GPSGDVE------PELCYQSMAEINVVRWS-PLE---LDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       296 -----~~~~~~~------~~~~~~~~~~i~~~~~~-p~~---~~l~~~~~d~~v~~w~v  339 (339)
                           .......      .....+|...|++++|+ +++   ..|++++.||.|++|++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             hhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                 0000000      11223799999999977 555   78899999999999984

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-41  Score=288.26  Aligned_cols=298  Identities=12%  Similarity=0.089  Sum_probs=235.6

Q ss_pred             eccCCeeEEEeeecCC-cccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           15 MAQWPISTVAWSVRHD-RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~-~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .|..+|.+++|+|+.. ....+++++    .++.|++|++................|...|.+++|+|+.... ..+|++
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~   90 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATV----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS-HPLLAV   90 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEE----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC-CEEEEE
T ss_pred             CCCCceEEEEEecccCCCCceEEEEC----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC-CCEEEE
Confidence            4789999999998311 133344444    3789999988754432222111112377899999999994100 057887


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCCc
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDRE  168 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~  168 (339)
                      ++ + .|++||+.+++  ....+.+|.     ..|.+++|+|.++++|++++.||.|++||+++++.+..+   ..|...
T Consensus        91 ~~~dg~i~v~d~~~~~--~~~~~~~~~-----~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           91 AGSRGIIRIINPITMQ--CIKHYVGHG-----NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             EETTCEEEEECTTTCC--EEEEEESCC-----SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             ecCCCEEEEEEchhce--EeeeecCCC-----CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            76 4 99999999887  777888887     899999999868899999999999999999999988887   679999


Q ss_pred             eeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-------------------------EeCCCCCCCeEEEEEecCC
Q 040307          169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-------------------------YENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------~~~~~~~~~v~~~~~~p~~  222 (339)
                      |.+++|+ ++++|++++.|+.|++||+++.+....+                         .....|...|.+++|+   
T Consensus       164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---  240 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---  240 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---
T ss_pred             eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---
Confidence            9999999 7899999999999999999976532211                         1112267889999997   


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCC-------------ceEEEecCCCCeeEEEeccC--CCCeEEEEeCCCcEEEEEecC
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTN-------------PVVVLSKHEGSVNGISWAPL--YGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~-------------~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      +++|++++.|+. |++||++....             .+..+..|...|.+++|+|+  + .+|++++.||.|++||+..
T Consensus       241 ~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          241 GDLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             TTEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCS
T ss_pred             CCEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCC
Confidence            579999999998 99999987432             36778889999999999999  8 6999999999999999998


Q ss_pred             CCCCCCCCCCCCccc-c-eeeecc--cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          288 PGYRSGNGGPSGDVE-P-ELCYQS--MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       288 ~~~~~~~~~~~~~~~-~-~~~~~~--~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..          ... . .....|  ...|++++|+|+++.|++++.|+.|++|++
T Consensus       319 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          319 ED----------PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             SS----------GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CC----------CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            76          111 1 133345  789999999999999999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-42  Score=299.23  Aligned_cols=296  Identities=17%  Similarity=0.265  Sum_probs=239.2

Q ss_pred             eeeccCCeeEEEeeecCCccc-EEEEeeecc------ccCCeEEEEecCCCCCc-ccceeeEeecCCCCceEEEEcCCCC
Q 040307           13 TYMAQWPISTVAWSVRHDRKS-RLAVGSFLE------DYSNKIELVNFNPETSD-FSADNRLIFDHPYTPTNIAFFPSEE   84 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~-~la~g~~~~------~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~   84 (339)
                      .+.+..+|.+++|+|+   ++ +||+|+..+      ..|+.|+||++...... ...    ...|...|.+++|+|++ 
T Consensus         8 ~l~~~~~v~~~~~sp~---g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~-   79 (416)
T 2pm9_A            8 KLAEFSRTATFAWSHD---KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA----SLQVDSKFNDLDWSHNN-   79 (416)
T ss_dssp             --CEEEESCBCCBCSS---SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC----CCCCSSCEEEEEECSSS-
T ss_pred             hHhhhhhcceEeeCCC---CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE----EEecCCceEEEEECCCC-
Confidence            3444568999999999   86 999992111      16999999887754321 221    25789999999999999 


Q ss_pred             CCCCCeEEEeC-C-cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---
Q 040307           85 TLNPDIVATSG-D-SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---  157 (339)
Q Consensus        85 ~~~~~~la~~~-~-~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---  157 (339)
                          .+|++++ + .|++|++...  .......+.+|.     ..|++++|+|.++++|++++.|+.|++||+++++   
T Consensus        80 ----~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           80 ----KIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP  150 (416)
T ss_dssp             ----SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred             ----CeEEEEccCCeEEEeecccccccccchhhccCCc-----cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence                7888876 4 9999999872  123677788887     8999999998338999999999999999998876   


Q ss_pred             ---eeee---eeccCCceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCC---CCCCCeEEEEEecCCCCeE
Q 040307          158 ---LETQ---LVAHDREVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENP---VQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       158 ---~~~~---~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l  226 (339)
                         ....   +..|...|.+++|+ + +.+|++++.|+.|++||+++.+....+....   .+...+.+++|+|++..++
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  230 (416)
T 2pm9_A          151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV  230 (416)
T ss_dssp             TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred             ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence               3322   35788999999999 5 6899999999999999999987544433221   1167899999999545799


Q ss_pred             EEEeeCC---CeEEEEecCCCCCceEEEe-cCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          227 ATVGMDS---NKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       227 ~~~~~d~---~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      ++++.++   . |++||++....++..+. +|...|.+++|+| ++ .+|++++.||.|++||+...+            
T Consensus       231 ~~~~~d~~~~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~------------  296 (416)
T 2pm9_A          231 ATATGSDNDPS-ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAE------------  296 (416)
T ss_dssp             EEEECCSSSCC-CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCC------------
T ss_pred             EEEECCCCCce-EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCc------------
Confidence            9999998   8 99999998667788888 8999999999999 66 699999999999999999877            


Q ss_pred             cceeeecccceeEEEEecCCC-CceEEEecCCeEEEEeC
Q 040307          302 EPELCYQSMAEINVVRWSPLE-LDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       302 ~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~d~~v~~w~v  339 (339)
                      .......|...|.+++|+|++ ..+++++.|+.|++|++
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence            233555789999999999999 66778889999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.2e-41  Score=288.30  Aligned_cols=284  Identities=13%  Similarity=0.107  Sum_probs=222.1

Q ss_pred             eccCCeeEEEeeecCCcc-cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC-CCCCCCCCeEE
Q 040307           15 MAQWPISTVAWSVRHDRK-SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP-SEETLNPDIVA   92 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~-~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~~~la   92 (339)
                      .|...|.+++|+|+   + ++||+|+    .|+.|+||++.........  .. .+|...|.+++|+| ++     .+|+
T Consensus        71 ~h~~~v~~~~~~~~---~~~~l~s~~----~dg~i~iwd~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~~-----~~l~  135 (383)
T 3ei3_B           71 PFDRRVTSLEWHPT---HPTTVAVGS----KGGDIILWDYDVQNKTSFI--QG-MGPGDAITGMKFNQFNT-----NQLF  135 (383)
T ss_dssp             CCSSCEEEEEECSS---CTTEEEEEE----BTSCEEEEETTSTTCEEEE--CC-CSTTCBEEEEEEETTEE-----EEEE
T ss_pred             CCCCCEEEEEECCC---CCCEEEEEc----CCCeEEEEeCCCcccceee--ec-CCcCCceeEEEeCCCCC-----CEEE
Confidence            46789999999999   8 8999999    7999999888754433222  11 36999999999999 55     7888


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      +++ | .|++||+.+.   ....+..+.  .+...|.+++|+| ++++|++++.|+.|++||+ +++.+..+..|...|.
T Consensus       136 s~~~d~~i~iwd~~~~---~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          136 VSSIRGATTLRDFSGS---VIQVFAKTD--SWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT  208 (383)
T ss_dssp             EEETTTEEEEEETTSC---EEEEEECCC--CSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred             EEeCCCEEEEEECCCC---ceEEEeccC--CCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence            876 5 9999999874   344444332  1227899999998 9999999999999999999 5777888889999999


Q ss_pred             EEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          171 DISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       171 ~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      +++|+ ++. +|++++.|+.|++||+++.+..........|...+.+++|+|.++++|++++.|+. |++||++. ....
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~-~~~~  286 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYD-WSKP  286 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTB-TTSC
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCC-Cccc
Confidence            99999 566 89999999999999999843211111111267899999999868899999999998 99999987 4444


Q ss_pred             EEEecCC-----------------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec--
Q 040307          249 VVLSKHE-----------------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ--  308 (339)
Q Consensus       249 ~~~~~~~-----------------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~--  308 (339)
                      ..+..|.                 ..+..++|+|++ ++  +++.|+.|++||+...+             ++ ....  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~-------------~~~~l~~~~  350 (383)
T 3ei3_B          287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGG-------------LVHQLRDPN  350 (383)
T ss_dssp             SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCC-------------EEEEECBTT
T ss_pred             cccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCc-------------eeeeecCCC
Confidence            5555443                 234446677776 34  77799999999999877             33 3333  


Q ss_pred             ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          309 SMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |...+..++|+|+++.|++++ |+.|++|++
T Consensus       351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          351 AAGIISLNKFSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             BCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred             CCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence            567788889999999777775 999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-40  Score=280.51  Aligned_cols=281  Identities=12%  Similarity=0.136  Sum_probs=236.6

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|..+|++++|+|+   +++|++|+    .||.|++|++....  ...  .+ ..|...|.+++|+|++     ++|++
T Consensus        29 ~~h~~~v~~~~~s~~---~~~l~~~~----~dg~i~vwd~~~~~--~~~--~~-~~h~~~v~~~~~~~~~-----~~l~s   91 (369)
T 3zwl_B           29 TGHERPLTQVKYNKE---GDLLFSCS----KDSSASVWYSLNGE--RLG--TL-DGHTGTIWSIDVDCFT-----KYCVT   91 (369)
T ss_dssp             ECCSSCEEEEEECTT---SCEEEEEE----SSSCEEEEETTTCC--EEE--EE-CCCSSCEEEEEECTTS-----SEEEE
T ss_pred             EEeeceEEEEEEcCC---CCEEEEEe----CCCEEEEEeCCCch--hhh--hh-hhcCCcEEEEEEcCCC-----CEEEE
Confidence            347899999999999   99999999    79999998876432  222  22 5799999999999999     78888


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCe---------
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREI---------  157 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~---------  157 (339)
                      ++ + .|++||+.+++  ....+. +.     ..|.+++|+| ++++|++++.+     +.|++||++...         
T Consensus        92 ~~~dg~i~iwd~~~~~--~~~~~~-~~-----~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~  162 (369)
T 3zwl_B           92 GSADYSIKLWDVSNGQ--CVATWK-SP-----VPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS  162 (369)
T ss_dssp             EETTTEEEEEETTTCC--EEEEEE-CS-----SCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred             EeCCCeEEEEECCCCc--EEEEee-cC-----CCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence            87 4 99999999887  666665 44     7899999998 99999999999     999999997653         


Q ss_pred             --eeeeeeccCC--ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          158 --LETQLVAHDR--EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       158 --~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                        ....+..|..  .+.+++|+ ++++|++++.|+.|++||+++..........  |...+.+++|+| ++.+|++++.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~d  239 (369)
T 3zwl_B          163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL--HEKSISDMQFSP-DLTYFITSSRD  239 (369)
T ss_dssp             SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC--CSSCEEEEEECT-TSSEEEEEETT
T ss_pred             cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec--CCCceeEEEECC-CCCEEEEecCC
Confidence              3334445555  89999999 7889999999999999999985444444444  678999999998 89999999999


Q ss_pred             CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC--------------cEEEEEecCCCCCCCCCCCC
Q 040307          233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS--------------RALIWEVVGPGYRSGNGGPS  298 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------------~v~iwd~~~~~~~~~~~~~~  298 (339)
                      +. |++||++. .+.+..+. +...+..++|+|++ .++++++.++              .+++||+....         
T Consensus       240 ~~-i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------  306 (369)
T 3zwl_B          240 TN-SFLVDVST-LQVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE---------  306 (369)
T ss_dssp             SE-EEEEETTT-CCEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCC---------
T ss_pred             ce-EEEEECCC-Cceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCc---------
Confidence            98 99999987 56666666 68899999999999 5999999888              89999998877         


Q ss_pred             CcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                         .......|...|++++|+|+++.|++++.|+.|++|++
T Consensus       307 ---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          307 ---EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             ---EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             ---chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence               23355678999999999999999999999999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.5e-40  Score=280.89  Aligned_cols=300  Identities=12%  Similarity=0.131  Sum_probs=225.2

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeec---cccCCeEEEEecCCCCCcccce----eeE-eecCCCCceEEEEcCC
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFL---EDYSNKIELVNFNPETSDFSAD----NRL-IFDHPYTPTNIAFFPS   82 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~---~~~~~~i~i~~~~~~~~~~~~~----~~~-~~~~~~~v~~l~~~~~   82 (339)
                      -..+....||++++|+|+   +++||+|+..   .+.++.|++|+++.........    ..+ ...|...|.++++++ 
T Consensus         8 ~~~~~~g~PV~sv~fs~d---g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~-   83 (365)
T 4h5i_A            8 TASYNVGYPAYGAKFLNN---DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK-   83 (365)
T ss_dssp             EEEEECSSCEEEEEEEET---TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET-
T ss_pred             eeecCCCCCEEEEEEeCC---CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC-
Confidence            345566789999999999   9999998721   1124579999988665432211    111 136778899888765 


Q ss_pred             CCCCCCCeEEEe-----------C-C-cEEEEeecCCcc--eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE--eCC
Q 040307           83 EETLNPDIVATS-----------G-D-SLRLWEIHDDRT--ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC--SVD  145 (339)
Q Consensus        83 ~~~~~~~~la~~-----------~-~-~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~d  145 (339)
                            ..+++|           + + .+++|++.....  .................+..++|+| ++++++++  +.|
T Consensus        84 ------~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d  156 (365)
T 4h5i_A           84 ------GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVP  156 (365)
T ss_dssp             ------TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSS
T ss_pred             ------CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCC
Confidence                  344443           2 3 799999877541  1222222222222235688999999 99987654  478


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      ++|+|||+++++.+..+. |...|.+++|+ +++++++++. +.+.+|+..+++..... ....|...+.+++|+| ++.
T Consensus       157 ~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~fsp-dg~  232 (365)
T 4h5i_A          157 AIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARK-TDFDKNWSLSKINFIA-DDT  232 (365)
T ss_dssp             CEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEE-CCCCTTEEEEEEEEEE-TTE
T ss_pred             CEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeee-ecCCCCCCEEEEEEcC-CCC
Confidence            999999999999888885 78889999999 7888888875 56777777776643332 2224677899999999 899


Q ss_pred             eEEEEeeCCC---eEEEEecCCCCC---ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC
Q 040307          225 FMATVGMDSN---KVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS  298 (339)
Q Consensus       225 ~l~~~~~d~~---~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  298 (339)
                      ++++++.++.   .+++||+.....   ....+.+|...|++++|+|++ ++||+|+.|+.|+|||+.+.+         
T Consensus       233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~---------  302 (365)
T 4h5i_A          233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS---------  302 (365)
T ss_dssp             EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE---------
T ss_pred             EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc---------
Confidence            9999998873   378888875332   134577899999999999999 699999999999999999877         


Q ss_pred             Cccccee--eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          299 GDVEPEL--CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       299 ~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                          ++.  ..+|...|++++|+||+++|++++.|++||||+|
T Consensus       303 ----~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          303 ----MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             ----EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             ----EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence                443  3479999999999999999999999999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.6e-41  Score=296.29  Aligned_cols=287  Identities=17%  Similarity=0.173  Sum_probs=221.0

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .+...|+||+|+|.  ++.+||+|+    .||.|+||++.........  .+ .+|.+.|++|+|+|.+.    .+|+++
T Consensus       117 ~~~~~V~~l~~~P~--~~~~lasGs----~dg~i~lWd~~~~~~~~~~--~~-~gH~~~V~~l~f~p~~~----~~l~s~  183 (435)
T 4e54_B          117 PFDRRATSLAWHPT--HPSTVAVGS----KGGDIMLWNFGIKDKPTFI--KG-IGAGGSITGLKFNPLNT----NQFYAS  183 (435)
T ss_dssp             ECSSCEEEEEECSS--CTTCEEEEE----TTSCEEEECSSCCSCCEEE--CC-CSSSCCCCEEEECSSCT----TEEEEE
T ss_pred             CCCCCEEEEEEeCC--CCCEEEEEe----CCCEEEEEECCCCCceeEE--Ec-cCCCCCEEEEEEeCCCC----CEEEEE
Confidence            35678999999995  267999999    7999999887755443322  22 58999999999998432    788888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | +|++||+++..   ...+..+.  .....+.+++|+| ++++|++|+.||.|++||++ ++.+..+.+|...|+++
T Consensus       184 s~D~~v~iwd~~~~~---~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v  256 (435)
T 4e54_B          184 SMEGTTRLQDFKGNI---LRVFASSD--TINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV  256 (435)
T ss_dssp             CSSSCEEEEETTSCE---EEEEECCS--SCSCCCCCEEEET-TTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred             eCCCEEEEeeccCCc---eeEEeccC--CCCccEEEEEECC-CCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence            7 5 99999998764   22222221  1125678999998 99999999999999999996 45677788999999999


Q ss_pred             Eec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          173 SWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       173 ~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      +|+ + ..+|++++.|+.|++||++..+....+.....|...|.+++|+| ++.+|++++.|+. |++||++. ......
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~-i~iwd~~~-~~~~~~  333 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSE-IRVYSASQ-WDCPLG  333 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSC-EEEEESSS-SSSEEE
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCE-EEEEECCC-CccceE
Confidence            999 3 45888999999999999998775554444445788999999998 9999999999999 99999987 444555


Q ss_pred             EecCCC------CeeEEEeccCCCCeEEEEe------------CCCcEEEEEecCCCCCCCCCCCCCcccce--eeeccc
Q 040307          251 LSKHEG------SVNGISWAPLYGRRLCSVA------------DDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSM  310 (339)
Q Consensus       251 ~~~~~~------~v~~~~~~p~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~  310 (339)
                      +..|..      .+....|+|++. ++++++            .++.|++||..++.             .+  ....|.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~-------------~~~~l~~~~~  399 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK-------------MMCQLYDPES  399 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCC-------------EEEEECCSSC
T ss_pred             EecccccccccceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCc-------------EEEEEeCCCC
Confidence            555432      234567777773 555554            34579999998877             33  233677


Q ss_pred             ceeEEE-EecCCCCceEEEecCCeEEEEeC
Q 040307          311 AEINVV-RWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       311 ~~i~~~-~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..|.++ +|+|+|..|++ +.|+.|+||++
T Consensus       400 ~~v~s~~~fspdg~~las-g~d~~i~iW~~  428 (435)
T 4e54_B          400 SGISSLNEFNPMGDTLAS-AMGYHILIWSQ  428 (435)
T ss_dssp             CCCCCEEEECTTSSCEEE-ECSSEEEECCC
T ss_pred             CcEEEEEEECCCCCEEEE-EcCCcEEEEEC
Confidence            888887 69999986554 56889999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-40  Score=279.66  Aligned_cols=250  Identities=22%  Similarity=0.328  Sum_probs=215.3

Q ss_pred             ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      +.+..+. +...|.+++|+|+   +++||+|+    .|+.|++|++............+ .+|.+.|.++.|++++    
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~----~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~----  155 (340)
T 1got_B           88 NKVHAIPLRSSWVMTCAYAPS---GNYVACGG----LDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDN----  155 (340)
T ss_dssp             CEEEEEECSSSCEEEEEECTT---SSEEEEEE----TTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETT----
T ss_pred             CcceEeecCCccEEEEEECCC---CCEEEEEe----CCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCC----
Confidence            3344443 5678999999999   99999999    79999999987654433332233 6899999999999988    


Q ss_pred             CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                       .+++++.| .|++||+.+++  ....+.+|.     ..|.+++|+| ++++|++|+.|+.|++||+++++....+.+|.
T Consensus       156 -~l~s~s~d~~i~~wd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~  226 (340)
T 1got_B          156 -QIVTSSGDTTCALWDIETGQ--QTTTFTGHT-----GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHE  226 (340)
T ss_dssp             -EEEEEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             -cEEEEECCCcEEEEECCCCc--EEEEEcCCC-----CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence             65555556 99999999887  778888888     8999999998 99999999999999999999999999999999


Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      ..|++++|+ ++++|++++.|+.|++||++..+.... +....+...+.+++|+| ++++|++|+.|+. |++||+.. .
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~-i~vwd~~~-~  302 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSK-SGRLLLAGYDDFN-CNVWDALK-A  302 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECT-TSSEEEEEETTSE-EEEEETTT-C
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-EccCCcccceEEEEECC-CCCEEEEECCCCe-EEEEEccc-C
Confidence            999999999 789999999999999999998764433 33323445799999998 9999999999998 99999987 6


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ..+..+.+|...|.+++|+|++ .+|++|+.|+.|+|||
T Consensus       303 ~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          303 DRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             cEeeEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence            6788999999999999999999 6999999999999997

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9.4e-41  Score=290.88  Aligned_cols=316  Identities=19%  Similarity=0.318  Sum_probs=244.3

Q ss_pred             ceeeeeeccCCeeEEEeeecCC-------cccEEEEeeeccccCCeEEEEecCCC------------------------C
Q 040307            9 PGVHTYMAQWPISTVAWSVRHD-------RKSRLAVGSFLEDYSNKIELVNFNPE------------------------T   57 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~-------~~~~la~g~~~~~~~~~i~i~~~~~~------------------------~   57 (339)
                      ..+.++....|..++.|.|+..       ...+|++|++..+..+.|.+++++..                        .
T Consensus        37 ~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~  116 (430)
T 2xyi_A           37 DLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVC  116 (430)
T ss_dssp             EEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC-------------------------
T ss_pred             HHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCC
Confidence            4566777889999999999832       12679999875556788999876410                        1


Q ss_pred             CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecC--------CcceeEEEeecCCCccCCCCEE
Q 040307           58 SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHD--------DRTELKSLLNSNKTSEFSSAIT  127 (339)
Q Consensus        58 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~--------~~~~~~~~~~~~~~~~~~~~i~  127 (339)
                      +.+..  .....|.+.|++++|+|++.    .+||+++.  .|++|++..        +.......+.+|.     ..|+
T Consensus       117 ~~~~~--~~~~~h~~~v~~l~~~p~~~----~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~  185 (430)
T 2xyi_A          117 GKIEI--EIKINHEGEVNRARYMPQNA----CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----KEGY  185 (430)
T ss_dssp             -CEEE--EEEEEESSCCSEEEEETTEE----EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----SCCC
T ss_pred             CceEE--EEEEcCCCcEEEEEECCCCC----cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----CCeE
Confidence            11211  23468999999999999832    78998874  999999986        2234677788888     8999


Q ss_pred             EEEEcCCCCC-EEEEEeCCCeEEEEECCCCee-------eeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCC
Q 040307          128 SFDWAGFDTR-RVATCSVDTTCVIWDIDREIL-------ETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDK  197 (339)
Q Consensus       128 ~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~  197 (339)
                      +++|+| ++. +|++|+.||.|++||+.++..       ...+..|...|.+++|+  ++.+|++++.|+.|++||++..
T Consensus       186 ~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          186 GLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             CEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             EEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            999998 666 999999999999999987321       45566899999999999  4789999999999999999987


Q ss_pred             c--ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307          198 E--RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       198 ~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                      .  .......  .|...|.+++|+|....++++|+.|+. |++||++....++..+..|...|.+++|+|+++.+|++++
T Consensus       265 ~~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          265 NTSKPSHTVD--AHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             CSSSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCCcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence            4  2222333  377899999999944457899999998 9999999877889999999999999999999866899999


Q ss_pred             CCCcEEEEEecCCCCCCC-CCCCCCcccce-eeecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307          276 DDSRALIWEVVGPGYRSG-NGGPSGDVEPE-LCYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       276 ~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v  339 (339)
                      .|+.|+|||+........ ..........+ ...+|...|++++|+|+++ .+++++.||.|++|++
T Consensus       342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            999999999988441000 00000000122 3346788999999999999 5678889999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.6e-41  Score=289.22  Aligned_cols=241  Identities=18%  Similarity=0.240  Sum_probs=217.4

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|..+|++++|+|++     .+|++|+ | .|+|||+.+++  ....+.+|.     ..|++++|+| ++++|++|+.|
T Consensus       105 ~gh~~~V~~~~~~p~~-----~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h~-----~~V~~v~~~~-~~~~l~sgs~D  171 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVF-----SVMVSASEDATIKVWDYETGD--FERTLKGHT-----DSVQDISFDH-SGKLLASCSAD  171 (410)
T ss_dssp             ECCSSCEEEEEECSSS-----SEEEEEESSSCEEEEETTTCC--CCEEECCCS-----SCEEEEEECT-TSSEEEEEETT
T ss_pred             cccCCcEEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc--EEEEEeccC-----CcEEEEEEcC-CCCEEEEEeCC
Confidence            6899999999999999     8899887 4 99999999987  777888888     8999999998 99999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      ++|++||+++++++..+.+|...|.+++|+ ++++|++++.|+.|++||++++.....+ ..  |...+.+++|+| ++.
T Consensus       172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~--h~~~v~~~~~~~-~g~  247 (410)
T 1vyh_C          172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TG--HREWVRMVRPNQ-DGT  247 (410)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-EC--CSSCEEEEEECT-TSS
T ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eC--CCccEEEEEECC-CCC
Confidence            999999999999999999999999999999 7899999999999999999998754443 33  678999999998 999


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC-------------------CCeEEEEeCCCcEEEEEe
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY-------------------GRRLCSVADDSRALIWEV  285 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~l~~~~~dg~v~iwd~  285 (339)
                      +|++++.|+. |++||++. ......+..|...|.+++|+|++                   ..+|++|+.|+.|++||+
T Consensus       248 ~l~s~s~D~~-v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~  325 (410)
T 1vyh_C          248 LIASCSNDQT-VRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  325 (410)
T ss_dssp             EEEEEETTSC-EEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             EEEEEcCCCe-EEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999 99999987 66788899999999999999962                   148999999999999999


Q ss_pred             cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..+.            ......+|...|++++|+|+++++++++.|+.|++|++
T Consensus       326 ~~~~------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          326 STGM------------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             TTTE------------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             CCCc------------eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            8876            23355679999999999999999999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-40  Score=304.68  Aligned_cols=297  Identities=14%  Similarity=0.213  Sum_probs=230.1

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.+.|++++|+|+  ++++|++|+    .|+.|+||++...............+|...|.+++|+|++     ++|++|
T Consensus       380 ~H~~~V~~v~~~~~--~~~~l~s~s----~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-----~~l~sg  448 (694)
T 3dm0_A          380 AHTDMVTAIATPID--NADIIVSAS----RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-----QFALSG  448 (694)
T ss_dssp             CCSSCEEEEECCTT--CCSEEEEEE----TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-----SEEEEE
T ss_pred             cCCceeEEEEecCC--CCCEEEEEe----CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-----CEEEEE
Confidence            58899999999987  257999999    7999999998765433222112236899999999999999     899988


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCCce
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDREV  169 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~v  169 (339)
                      + | .|+|||+.+++  ....+.+|.     ..|.+++|+| ++++|++|+.|++|++||+.........   .+|...|
T Consensus       449 s~Dg~v~vwd~~~~~--~~~~~~~h~-----~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v  520 (694)
T 3dm0_A          449 SWDGELRLWDLAAGV--STRRFVGHT-----KDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV  520 (694)
T ss_dssp             ETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred             eCCCcEEEEECCCCc--ceeEEeCCC-----CCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence            7 5 99999999886  778888888     8999999998 9999999999999999998655433222   4688899


Q ss_pred             eEEEec-CC--cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          170 YDISWG-GF--NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       170 ~~~~~~-~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      .+++|+ ++  ..|++++.|+.|++||+++.+.... ..  .|...|.+++|+| ++++|++++.|+. |++||++. .+
T Consensus       521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-~~--~h~~~v~~v~~sp-dg~~l~sg~~Dg~-i~iwd~~~-~~  594 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-LA--GHTGYVSTVAVSP-DGSLCASGGKDGV-VLLWDLAE-GK  594 (694)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSB-CEEEETTT-TE
T ss_pred             EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-Ec--CCCCCEEEEEEeC-CCCEEEEEeCCCe-EEEEECCC-Cc
Confidence            999999 33  5899999999999999998774433 33  3778999999998 8999999999999 99999987 55


Q ss_pred             ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC---CCCCC----CCcccceeeecccceeEEEEec
Q 040307          247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS---GNGGP----SGDVEPELCYQSMAEINVVRWS  319 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~i~~~~~~  319 (339)
                      .+..+.. ...|.+++|+|++ .+|++++ ++.|+|||++......   .....    .....+.....+...+++++|+
T Consensus       595 ~~~~~~~-~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s  671 (694)
T 3dm0_A          595 KLYSLEA-NSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS  671 (694)
T ss_dssp             EEECCBC-SSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred             eEEEecC-CCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence            5555554 5689999999998 4666655 5679999998765100   00000    0000000011122347899999


Q ss_pred             CCCCceEEEecCCeEEEEeC
Q 040307          320 PLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       320 p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |++++|++++.||.|++|++
T Consensus       672 pdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          672 ADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEec
Confidence            99999999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-40  Score=288.32  Aligned_cols=290  Identities=15%  Similarity=0.227  Sum_probs=238.3

Q ss_pred             ceeeeeeccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEec----CCCCC------cccceeeEe-----ecCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNF----NPETS------DFSADNRLI-----FDHPY   72 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~----~~~~~------~~~~~~~~~-----~~~~~   72 (339)
                      +.+..+.|..+|.+++|+|+   +. +||+|+    .|+.|++|++    .....      .......+.     ..|..
T Consensus        37 ~~~~~~~~~~~v~~~~~s~~---~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (425)
T 1r5m_A           37 KILKEIVKLDNIVSSTWNPL---DESILAYGE----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN  109 (425)
T ss_dssp             EECEEEEECSCCSEEEECSS---CTTEEEEEE----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred             hheeeeeccCceEEEEECCC---CCcEEEEec----CCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence            44555667799999999999   99 999999    7999999998    54431      111100010     11577


Q ss_pred             CceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Q 040307           73 TPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI  150 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i  150 (339)
                      .|.+++|+|++     ++|++++ + .|++|+ .+++  ....+..|.     ..|.+++|+| ++++|++++.|+.|++
T Consensus       110 ~v~~~~~s~~~-----~~l~~~~~dg~i~i~~-~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~i  175 (425)
T 1r5m_A          110 QVTCLAWSHDG-----NSIVTGVENGELRLWN-KTGA--LLNVLNFHR-----APIVSVKWNK-DGTHIISMDVENVTIL  175 (425)
T ss_dssp             CEEEEEECTTS-----SEEEEEETTSCEEEEE-TTSC--EEEEECCCC-----SCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred             ceEEEEEcCCC-----CEEEEEeCCCeEEEEe-CCCC--eeeeccCCC-----ccEEEEEECC-CCCEEEEEecCCeEEE
Confidence            99999999999     8888887 4 999999 3443  677788887     8999999998 9999999999999999


Q ss_pred             EECCCCeeeeeeeccCCc---------------eeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307          151 WDIDREILETQLVAHDRE---------------VYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       151 ~d~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  215 (339)
                      ||+++++.+..+..+...               +.+++|+++..+++++.++.|++||+++.+....+ .  .|...+.+
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~-~--~~~~~i~~  252 (425)
T 1r5m_A          176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKL-I--GHHGPISV  252 (425)
T ss_dssp             EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEE-C--CCSSCEEE
T ss_pred             EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeee-c--cCCCceEE
Confidence            999999988888777766               89999997678999999999999999988654443 2  36789999


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG  295 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  295 (339)
                      ++|+| ++++|++++.++. |++||++. .+++..+..|...|.+++|+|++  +|++++.|+.|++||+....      
T Consensus       253 ~~~~~-~~~~l~~~~~d~~-i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~------  321 (425)
T 1r5m_A          253 LEFND-TNKLLLSASDDGT-LRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT------  321 (425)
T ss_dssp             EEEET-TTTEEEEEETTSC-EEEECSSS-BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE------
T ss_pred             EEECC-CCCEEEEEcCCCE-EEEEECCC-CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc------
Confidence            99998 8899999999999 99999987 66788888999999999999997  89999999999999998876      


Q ss_pred             CCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          296 GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       296 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                            .......|...|.+++|+|+++.+++++.|+.|++|++
T Consensus       322 ------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          322 ------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             ------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             ------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence                  22345568889999999999998999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.4e-40  Score=274.24  Aligned_cols=250  Identities=20%  Similarity=0.265  Sum_probs=207.6

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~  144 (339)
                      .+|.+.|.+++|+|++     ++||+|+ | +|+||++.........++.+|.     .+|++++|+|. ++++|++|+.
T Consensus         6 ~~h~~~V~~~~~s~~g-----~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~-----~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYG-----KRMATCSSDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             CSCSSCEEEEEECTTS-----SEEEEEETTSCEEEEEBCSSCBCCCEEECCCS-----SCEEEEEECCGGGCSEEEEEET
T ss_pred             cCCcCceEEEEECCCC-----CEEEEEeCCCEEEEEecCCCCcEEEEEEcccc-----CCeEEEEecCCCcCCEEEEEcC
Confidence            5899999999999999     8999887 5 9999999865444778889998     99999999862 4789999999


Q ss_pred             CCeEEEEECCCCe--eeeeeeccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcce-eeEEeCCCCCCCeEEEEE
Q 040307          145 DTTCVIWDIDREI--LETQLVAHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERS-TIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       145 d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~  218 (339)
                      |++|++||+++++  .+..+..|...|.+++|++   +.+|++++.|+.|++||++..... ......  |...+.+++|
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~--h~~~v~~~~~  153 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASW  153 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC--CSSCEEEEEE
T ss_pred             CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec--ccCccceEee
Confidence            9999999998774  4566778999999999994   689999999999999999876422 233333  7789999999


Q ss_pred             ecCC------------CCeEEEEeeCCCeEEEEecCCCCC---ceEEEecCCCCeeEEEeccCC--CCeEEEEeCCCcEE
Q 040307          219 NKAD------------PRFMATVGMDSNKVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPLY--GRRLCSVADDSRAL  281 (339)
Q Consensus       219 ~p~~------------~~~l~~~~~d~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~v~  281 (339)
                      +|..            +++|++|+.|+. |++||++....   ....+.+|...|.+++|+|++  ..+|++++.|++|+
T Consensus       154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          154 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             CCCC------------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             cCCcccccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence            9842            579999999999 99999986432   456788999999999999985  36999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCcccceee--ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          282 IWEVVGPGYRSGNGGPSGDVEPELC--YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       282 iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |||++....         .......  ..|...|.+++|+|+++.|++++.|+.|++|++
T Consensus       233 iWd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          233 IWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCC---------ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            999987540         0011122  357788999999999999999999999999973

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-40  Score=287.23  Aligned_cols=292  Identities=12%  Similarity=0.125  Sum_probs=232.7

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc--ccceeeEeecCCCCceEEEEcCC----C---CC
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD--FSADNRLIFDHPYTPTNIAFFPS----E---ET   85 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~----~---~~   85 (339)
                      .|..+|++++|+|.     +|++|+    .||.|+||++......  ......+ ..|...|.+++|+|+    +   . 
T Consensus        14 ~h~~~i~~~~~~~~-----~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~-   82 (397)
T 1sq9_A           14 AHDADIFSVSACNS-----FTVSCS----GDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELC-   82 (397)
T ss_dssp             CSSSCEEEEEECSS-----EEEEEE----TTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEE-
T ss_pred             hhhcCeEEEEecCC-----eEEEEc----CCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCcccc-
Confidence            47899999999885     899999    7999999888765411  1111133 589999999999998    5   3 


Q ss_pred             CCCCeEEEeC-C-cEEEEeecCCcc---eeEEEeecCCCccCCCCEEEEEEc----CCCCCE-EEEEeCCCeEEEEECCC
Q 040307           86 LNPDIVATSG-D-SLRLWEIHDDRT---ELKSLLNSNKTSEFSSAITSFDWA----GFDTRR-VATCSVDTTCVIWDIDR  155 (339)
Q Consensus        86 ~~~~~la~~~-~-~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~-l~~~~~d~~v~i~d~~~  155 (339)
                          +|++++ + .|++|++.+++.   .....+..|........|.+++|+    | ++++ |++++.||.|++||+++
T Consensus        83 ----~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           83 ----LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             ----EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             ----EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCc
Confidence                555554 5 999999998761   016666666200001789999999    8 8899 99999999999999988


Q ss_pred             ------Ceeee-----eee-------ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC---CCCe
Q 040307          156 ------EILET-----QLV-------AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ---DCPL  213 (339)
Q Consensus       156 ------~~~~~-----~~~-------~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~v  213 (339)
                            ++.+.     .+.       .|...|.+++|+ ++ +|++++.|+.|++||+++.+....+.....|   ...+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence                  66655     663       488899999999 67 9999999999999999987755444331224   6899


Q ss_pred             EEEEEecCCCCeEEEEeeC---CCeEEEEecCCCCCceEEEec-------------CCCCeeEEEeccCCCCeEEEEeCC
Q 040307          214 LRLEWNKADPRFMATVGMD---SNKVVVLDIRFPTNPVVVLSK-------------HEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~~d---~~~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      .+++|+| ++++|++++.+   +. |++||++. .+++..+..             |...|.+++|+|++ .+|++++.|
T Consensus       237 ~~i~~~~-~~~~l~~~~~d~~~g~-i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  312 (397)
T 1sq9_A          237 RSVKFSP-QGSLLAIAHDSNSFGC-ITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD  312 (397)
T ss_dssp             EEEEECS-STTEEEEEEEETTEEE-EEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred             ceEEECC-CCCEEEEEecCCCCce-EEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence            9999998 89999999999   88 99999987 677888888             99999999999999 699999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCcccceeee------cc---------------cceeEEEEecCCC----------CceE
Q 040307          278 SRALIWEVVGPGYRSGNGGPSGDVEPELCY------QS---------------MAEINVVRWSPLE----------LDWI  326 (339)
Q Consensus       278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~~p~~----------~~l~  326 (339)
                      |.|++||+...+            ......      .|               ...|++++|+|++          +.|+
T Consensus       313 g~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~  380 (397)
T 1sq9_A          313 GKLRFWDVKTKE------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC  380 (397)
T ss_dssp             SEEEEEETTTTE------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred             CeEEEEEcCCCc------------eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence            999999998876            122333      45               8899999999998          6788


Q ss_pred             EEecCCeEEEEeC
Q 040307          327 AIAFVNKLQLLKV  339 (339)
Q Consensus       327 ~~~~d~~v~~w~v  339 (339)
                      +++.|+.|++|++
T Consensus       381 s~~~dg~i~iw~~  393 (397)
T 1sq9_A          381 CVCLDRSIRWFRE  393 (397)
T ss_dssp             EEETTTEEEEEEE
T ss_pred             EecCCCcEEEEEc
Confidence            9999999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-41  Score=290.11  Aligned_cols=298  Identities=15%  Similarity=0.170  Sum_probs=222.1

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +..+|.+++|+|+   +++||+|+    .|+.|+||++.........  .+ .+|...|.+++|+|++     ++|++++
T Consensus        10 ~~~~v~~~~~s~~---g~~l~~~~----~d~~i~iw~~~~~~~~~~~--~~-~~h~~~v~~~~~s~~~-----~~l~s~s   74 (377)
T 3dwl_C           10 LPKPSYEHAFNSQ---RTEFVTTT----ATNQVELYEQDGNGWKHAR--TF-SDHDKIVTCVDWAPKS-----NRIVTCS   74 (377)
T ss_dssp             CSSCCSCCEECSS---SSEEECCC----SSSCBCEEEEETTEEEECC--CB-CCCSSCEEEEEECTTT-----CCEEEEE
T ss_pred             CCCcEEEEEECCC---CCEEEEec----CCCEEEEEEccCCceEEEE--EE-ecCCceEEEEEEeCCC-----CEEEEEe
Confidence            4679999999999   99999998    7999999888754212222  23 5799999999999999     7888887


Q ss_pred             -C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeec-cCCc
Q 040307           96 -D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVA-HDRE  168 (339)
Q Consensus        96 -~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~-~~~~  168 (339)
                       | .|++||+.+++ ......+..|.     ..|.+++|+| ++++|++++.|+.|++||+++++   ....+.. |...
T Consensus        75 ~d~~v~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTWKQTLVLLRLN-----RAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             TTSSEEEC------CCCCEEECCCCS-----SCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred             CCCeEEEEEcCCCCceeeeeEecccC-----CceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence             5 99999998875 44566677777     8999999998 99999999999999999998877   3666766 9999


Q ss_pred             eeEEEec-CCcEEEEEeCCCcEEEEECCCCc---------------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKE---------------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      |.+++|+ ++++|++++.|+.|++||++...               ........ .|...|.+++|+| ++++|++++.|
T Consensus       149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d  226 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHD  226 (377)
T ss_dssp             EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETT
T ss_pred             eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCC
Confidence            9999999 78999999999999999996432               01111222 5778999999998 89999999999


Q ss_pred             CCeEEEEecCCCCCc---eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC---CCCCC----CC-----
Q 040307          233 SNKVVVLDIRFPTNP---VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY---RSGNG----GP-----  297 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~----~~-----  297 (339)
                      +. |++||++....+   +..+..|...|.+++|+|++ ++|++++.++.+ +|+......   ...+.    ..     
T Consensus       227 ~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T 3dwl_C          227 SS-VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTG  303 (377)
T ss_dssp             TE-EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSS
T ss_pred             Cc-EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccc
Confidence            98 999999984432   67888999999999999999 688888766555 776653220   00000    00     


Q ss_pred             --------CCc--------------------ccceeeecccceeEEEEecCCCCc----eEEEecCCeEEEEeC
Q 040307          298 --------SGD--------------------VEPELCYQSMAEINVVRWSPLELD----WIAIAFVNKLQLLKV  339 (339)
Q Consensus       298 --------~~~--------------------~~~~~~~~~~~~i~~~~~~p~~~~----l~~~~~d~~v~~w~v  339 (339)
                              ...                    ........|...|+++++.+....    +++++.||.|++|++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          304 NTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                    000                    000011238899999998876544    889999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-40  Score=288.62  Aligned_cols=288  Identities=15%  Similarity=0.177  Sum_probs=232.0

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      ..+....|+|+   +++||+|+    .|+.|++|++..  .....   ....|...|.+++|+|++     ++|++++ |
T Consensus        98 ~~~~~~~~~~~---~~~l~~~~----~dg~i~iwd~~~--~~~~~---~~~~h~~~v~~~~~~~~~-----~~l~s~s~d  160 (420)
T 3vl1_A           98 DYTAVDTAKLQ---MRRFILGT----TEGDIKVLDSNF--NLQRE---IDQAHVSEITKLKFFPSG-----EALISSSQD  160 (420)
T ss_dssp             CEEEEEEECSS---SCEEEEEE----TTSCEEEECTTS--CEEEE---ETTSSSSCEEEEEECTTS-----SEEEEEETT
T ss_pred             CceEEEEEecC---CCEEEEEE----CCCCEEEEeCCC--cceee---ecccccCccEEEEECCCC-----CEEEEEeCC
Confidence            34445578899   99999999    799999977653  33332   114899999999999999     8888887 4


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec---cCCceeE-
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA---HDREVYD-  171 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~v~~-  171 (339)
                       .|++||+.+++  ....+.+|.     ..|.+++|+| ++++|++++.|+.|++||+++++.+..+..   +...+.+ 
T Consensus       161 ~~i~iwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~  232 (420)
T 3vl1_A          161 MQLKIWSVKDGS--NPRTLIGHR-----ATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI  232 (420)
T ss_dssp             SEEEEEETTTCC--CCEEEECCS-----SCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEE
T ss_pred             CeEEEEeCCCCc--CceEEcCCC-----CcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEE
Confidence             99999999887  677888888     8999999998 999999999999999999999998888764   3334444 


Q ss_pred             --------------------EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC-eEEEE
Q 040307          172 --------------------ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR-FMATV  229 (339)
Q Consensus       172 --------------------~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~  229 (339)
                                          ++|+ ++++|++++.||.|++||+++.+....+...  |...+.+++|+| ++. +|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~l~~g  309 (420)
T 3vl1_A          233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--FTCSCNSLTVDG-NNANYIYAG  309 (420)
T ss_dssp             EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--TSSCEEEEEECS-SCTTEEEEE
T ss_pred             EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--cCCCceeEEEeC-CCCCEEEEE
Confidence                                4556 6789999999999999999998765555443  678999999999 666 99999


Q ss_pred             eeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307          230 GMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ  308 (339)
Q Consensus       230 ~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  308 (339)
                      +.|+. |++||++....++..+.. |...|.++.+ |++ .+|++++.|+.|++|++.... .+...  .....+.....
T Consensus       310 ~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~-~~~~~--~~~~~~~~~~~  383 (420)
T 3vl1_A          310 YENGM-LAQWDLRSPECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPE-SERPA--IEFETPTFLVS  383 (420)
T ss_dssp             ETTSE-EEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTT-CCSCE--ECTTSCEEECC
T ss_pred             eCCCe-EEEEEcCCCcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCC-CCccc--eeccCccEEcc
Confidence            99998 999999986677788877 6667888855 566 599999999999999998854 11100  00012335567


Q ss_pred             ccceeEEEEecCCCC---ceEEEecCCeEEEEeC
Q 040307          309 SMAEINVVRWSPLEL---DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       309 ~~~~i~~~~~~p~~~---~l~~~~~d~~v~~w~v  339 (339)
                      |...|.+++|+|+++   .+++++.++.+.+|++
T Consensus       384 ~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          384 NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred             CCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence            888999999999998   7999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.4e-39  Score=292.51  Aligned_cols=274  Identities=19%  Similarity=0.287  Sum_probs=234.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |..+|.+++|+|+   ++.|++++    .|+.|++|+.+  .....   .+ .+|...|.+++|+|++     .+|++++
T Consensus       261 ~~~~v~~v~~~~d---~~~l~~~~----~d~~i~~w~~~--~~~~~---~~-~~h~~~v~~~~~~~~~-----~~l~t~~  322 (577)
T 2ymu_A          261 HSSSVNGVAFRPD---GQTIASAS----DDKTVKLWNRN--GQLLQ---TL-TGHSSSVWGVAFSPDG-----QTIASAS  322 (577)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETT--SCEEE---EE-CCCSSCEEEEEECTTS-----SEEEEEE
T ss_pred             CCCCEEEEEEcCC---CCEEEEEe----CCCEEEEEeCC--CcEEE---EE-ecCCCCeEEEEECCCC-----CEEEEEe
Confidence            6789999999999   99999999    79999998753  22222   22 6899999999999999     8888887


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                       + .|++|+....   ....+.+|.     ..|.+++|+| ++++|++++.|+.|++||. +++.+..+.+|...|.+++
T Consensus       323 ~d~~i~~w~~~~~---~~~~~~~~~-----~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~  392 (577)
T 2ymu_A          323 DDKTVKLWNRNGQ---HLQTLTGHS-----SSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA  392 (577)
T ss_dssp             TTSCEEEEETTSC---EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEE
T ss_pred             CCCeEEEEeCCCC---eeEEEeCCC-----CCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEE
Confidence             4 9999998765   456677777     8999999998 9999999999999999996 5677888889999999999


Q ss_pred             ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      |+ ++++|++++.|+.|++||... +... ...  .|...|.+++|+| ++++|++++.|+. |++||..  .+.+..+.
T Consensus       393 ~s~dg~~l~~~~~d~~v~~~~~~~-~~~~-~~~--~~~~~v~~~~~s~-d~~~l~~~~~d~~-v~~w~~~--~~~~~~~~  464 (577)
T 2ymu_A          393 FSPDGQTIASASDDKTVKLWNRNG-QLLQ-TLT--GHSSSVWGVAFSP-DDQTIASASDDKT-VKLWNRN--GQLLQTLT  464 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECTTC-CEEE-EEE--CCSSCEEEEEECT-TSSEEEEEETTSE-EEEEETT--SCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCC-CEEE-Eec--CCCCCeEEEEECC-CCCEEEEEcCCCE-EEEEECC--CCEEEEEc
Confidence            99 799999999999999999643 3222 233  3678999999998 8999999999998 9999974  56788899


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~  332 (339)
                      +|...|.+++|+|++ ++|++++.|+.|++||.....             .....+|...|++++|+|++++|++++.|+
T Consensus       465 ~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~~~~-------------~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg  530 (577)
T 2ymu_A          465 GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQL-------------LQTLTGHSSSVRGVAFSPDGQTIASASDDK  530 (577)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSCE-------------EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCCCCE-------------EEEEeCCCCCEEEEEEcCCCCEEEEEECcC
Confidence            999999999999999 699999999999999954322             345668999999999999999999999999


Q ss_pred             eEEEEeC
Q 040307          333 KLQLLKV  339 (339)
Q Consensus       333 ~v~~w~v  339 (339)
                      .|++|++
T Consensus       531 ~v~lwd~  537 (577)
T 2ymu_A          531 TVKLWNR  537 (577)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            9999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-39  Score=269.70  Aligned_cols=283  Identities=15%  Similarity=0.149  Sum_probs=234.1

Q ss_pred             CCCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307            6 EKKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE   84 (339)
Q Consensus         6 ~~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~   84 (339)
                      ...+.+..+. |..+|.+++| |+   +.+|++|+    .||.|++|++...  ....  . ...|...|.+++|+|++ 
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~---~~~l~s~~----~dg~v~vw~~~~~--~~~~--~-~~~~~~~v~~~~~~~~~-   71 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VD---DSKVASVS----RDGTVRLWSKDDQ--WLGT--V-VYTGQGFLNSVCYDSEK-   71 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EE---TTEEEEEE----TTSEEEEEEESSS--EEEE--E-EEECSSCEEEEEEETTT-
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cC---CCEEEEEE----cCCcEEEEECCCC--EEEE--E-eecCCccEEEEEECCCC-
Confidence            3445555554 7899999999 99   99999999    7999999887543  2222  2 26789999999999999 


Q ss_pred             CCCCCeEEEeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           85 TLNPDIVATSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        85 ~~~~~~la~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                          .+|++++ + .|++|++.... ......+..|.     ..|.++.|+   ++++++++.|+.|++||  .++....
T Consensus        72 ----~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~  137 (313)
T 3odt_A           72 ----ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ-----GNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYN  137 (313)
T ss_dssp             ----TEEEEEETTSCEEEEETTCCTTSCC-CEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred             ----CEEEEecCCCeEEEEEeeecCCCCcccchhhcc-----cCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEe
Confidence                8888887 4 99999987653 23566777777     899999994   57999999999999999  6677888


Q ss_pred             eeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307          162 LVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL  239 (339)
Q Consensus       162 ~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~  239 (339)
                      +..|...+.+++|+  +++.+++++.|+.|++||...  ....+..  .+...+.+++|+| ++. +++++.++. |++|
T Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~--~~~~~i~~~~~~~-~~~-~~~~~~dg~-i~i~  210 (313)
T 3odt_A          138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSG--IHNDVVRHLAVVD-DGH-FISCSNDGL-IKLV  210 (313)
T ss_dssp             EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEECS--SCSSCEEEEEEEE-TTE-EEEEETTSE-EEEE
T ss_pred             cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEEec--cCcccEEEEEEcC-CCe-EEEccCCCe-EEEE
Confidence            88999999999998  588999999999999999332  2222222  2678999999998 666 889999998 9999


Q ss_pred             ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307          240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS  319 (339)
Q Consensus       240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  319 (339)
                      |++. .+++..+..|...|.+++|+|++  .|++++.||.|++||+...+            .......|...|.+++|+
T Consensus       211 d~~~-~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~------------~~~~~~~~~~~i~~~~~~  275 (313)
T 3odt_A          211 DMHT-GDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGS------------LKQVITLPAISIWSVDCM  275 (313)
T ss_dssp             ETTT-CCEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCC------------EEEEEECSSSCEEEEEEC
T ss_pred             ECCc-hhhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCc------------eeEEEeccCceEEEEEEc
Confidence            9987 67888999999999999999998  48899999999999999877            233555678899999999


Q ss_pred             CCCCceEEEecCCeEEEEeC
Q 040307          320 PLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       320 p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |+++ +++++.|+.|++|++
T Consensus       276 ~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          276 SNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             TTSC-EEEEETTSCEEEEES
T ss_pred             cCCC-EEEEeCCCcEEEEeC
Confidence            9997 888999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.3e-40  Score=286.71  Aligned_cols=280  Identities=12%  Similarity=0.079  Sum_probs=226.9

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-   96 (339)
                      .+++++|+|+   +++|++|+    .|+.|++|++.........     ..| ..+....|+|++     ++|++++ + 
T Consensus        58 ~~~~~~~s~~---g~~l~~~~----~d~~v~i~d~~~~~~~~~~-----~~~-~~~~~~~~~~~~-----~~l~~~~~dg  119 (420)
T 3vl1_A           58 AGKGNTFEKV---GSHLYKAR----LDGHDFLFNTIIRDGSKML-----KRA-DYTAVDTAKLQM-----RRFILGTTEG  119 (420)
T ss_dssp             CCTTCEEEEE---ETTEEEEE----ETTEEEEEECCSEETTTTS-----CSC-CEEEEEEECSSS-----CEEEEEETTS
T ss_pred             cccceeeeec---CCeEEEEE----cCCcEEEEEecccceeeEE-----ecC-CceEEEEEecCC-----CEEEEEECCC
Confidence            4568999999   99999999    7999999887654332222     233 445556789999     8888887 4 


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-  175 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-  175 (339)
                      .|++||+.+++  ....+.+|.     ..|++++|+| ++++|++++.|+.|++||+++++.+..+.+|...|.+++|+ 
T Consensus       120 ~i~iwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  191 (420)
T 3vl1_A          120 DIKVLDSNFNL--QREIDQAHV-----SEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID  191 (420)
T ss_dssp             CEEEECTTSCE--EEEETTSSS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred             CEEEEeCCCcc--eeeeccccc-----CccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence            99999998876  666777887     8999999998 89999999999999999999999999999999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE---------------------EEecCCCCeEEEEeeCCC
Q 040307          176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL---------------------EWNKADPRFMATVGMDSN  234 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~---------------------~~~p~~~~~l~~~~~d~~  234 (339)
                      ++++|++++.|+.|++||+++++....+.....+...+.++                     +|+| ++++|++++.|+.
T Consensus       192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~  270 (420)
T 3vl1_A          192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGV  270 (420)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSC
T ss_pred             CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCe
Confidence            78999999999999999999887655544333344445544                     4566 7889999999999


Q ss_pred             eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec-ccce
Q 040307          235 KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ-SMAE  312 (339)
Q Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~  312 (339)
                       |++||++...........|...|.+++|+|++..+|++++.||.|++||++...            .+. .... |...
T Consensus       271 -i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~  337 (420)
T 3vl1_A          271 -ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE------------CPVGEFLINEGTP  337 (420)
T ss_dssp             -EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT------------SCSEEEEESTTSC
T ss_pred             -EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc------------CchhhhhccCCCC
Confidence             999999984443444456888999999999994499999999999999999876            223 3333 6778


Q ss_pred             eEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          313 INVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       313 i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |..+.| |++..+++++.|+.|++|++
T Consensus       338 v~~~~~-~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          338 INNVYF-AAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             EEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred             ceEEEe-CCCCEEEEecCCccEEEEec
Confidence            888865 56677889999999999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=275.65  Aligned_cols=257  Identities=21%  Similarity=0.336  Sum_probs=208.0

Q ss_pred             ecCCC-CceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307           68 FDHPY-TPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        68 ~~~~~-~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                      .+|.. .|.+++|+|++     ++||+|+ | .|+||++.++....... ..+|.     ..|.+++|+| ++++|++|+
T Consensus        12 ~~h~~~~v~~l~~sp~g-----~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~-----~~v~~~~~sp-~g~~l~s~s   80 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPAG-----TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ-----RTVRKVAWSP-CGNYLASAS   80 (345)
T ss_dssp             CCSTTSCEEEEEECTTS-----SCEEEEETTSCEEEEEEETTEEEEEEEECSSCS-----SCEEEEEECT-TSSEEEEEE
T ss_pred             cCCCCCcEEEEEECCCC-----CEEEEEcCCCeEEEEEcCCCcceeeeeeccccC-----CcEEEEEECC-CCCEEEEEE
Confidence            57877 89999999999     8899887 5 99999998876333332 35676     8999999998 999999999


Q ss_pred             CCCeEEEEECCCC--eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307          144 VDTTCVIWDIDRE--ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       144 ~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p  220 (339)
                      .|+.|++||++.+  +.+..+.+|...|.+++|+ ++++|++++.|+.|++||++.............|...|.+++|+|
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            9999999999776  3567888999999999999 799999999999999999988764443333344788999999998


Q ss_pred             CCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC--C
Q 040307          221 ADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG--P  297 (339)
Q Consensus       221 ~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~  297 (339)
                       ++.+|++++.|+. |++||.+... .+...+.+|...|++++|+|++ ++|++++.|+.|+||+............  .
T Consensus       161 -~~~~l~s~s~d~~-i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          161 -SQELLASASYDDT-VKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             -SSSCEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             -CCCEEEEEeCCCc-EEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence             8999999999999 9999997632 2456788999999999999999 6999999999999999865441100000  0


Q ss_pred             CCcccce-eee-cccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          298 SGDVEPE-LCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       298 ~~~~~~~-~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ....... ... .|...|++++|+|++..+++++.|+.|++|+
T Consensus       238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            0000111 112 3788999999999999999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-39  Score=274.28  Aligned_cols=282  Identities=14%  Similarity=0.137  Sum_probs=233.1

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..+..+|.+++|+|+   +++++++.    .++.+.+  +........   ....+|...|.+++|+|++     ++|++
T Consensus         6 ~~~~~~v~~~~~s~d---g~~~~~~~----~~~~~~~--~~~~~~~~~---~~~~~h~~~v~~~~~~~~~-----~~l~~   68 (337)
T 1gxr_A            6 AMGSKPAYSFHVTAD---GQMQPVPF----PPDALIG--PGIPRHARQ---INTLNHGEVVCAVTISNPT-----RHVYT   68 (337)
T ss_dssp             EEEEEECCEEEECSS---SCEEECCC----CTTSSSS--TTCCSEEEE---EEEECCSSCCCEEEECSSS-----SEEEE
T ss_pred             cccCCceeEEEECCC---CCEEEeec----CCCcEec--cccCCcccc---ceeccCCCceEEEEEecCC-----cEEEE
Confidence            345678999999999   99999888    5666555  322221111   1235899999999999999     89999


Q ss_pred             eCC-cEEEEeecCCc-ceeEEEee--cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe--eeeeeeccCC
Q 040307           94 SGD-SLRLWEIHDDR-TELKSLLN--SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--LETQLVAHDR  167 (339)
Q Consensus        94 ~~~-~i~iw~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~  167 (339)
                      +++ .|++|++.+++ ......+.  .|.     ..|.+++|+| ++++|++++.|+.|++||+++++  ....+..|..
T Consensus        69 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  142 (337)
T 1gxr_A           69 GGKGCVKVWDISHPGNKSPVSQLDCLNRD-----NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP  142 (337)
T ss_dssp             ECBSEEEEEETTSTTCCSCSEEEECSCTT-----SBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred             cCCCeEEEEECCCCCceeeeecccccCCC-----CcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence            887 99999998764 11223333  455     8999999998 99999999999999999998877  5667778999


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      .+.+++|+ ++++|++++.|+.|++||+++.+....+ .  .|...+.+++|+| ++++|++++.++. |++||++. .+
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~--~~~~~i~~~~~~~-~~~~l~~~~~dg~-i~~~d~~~-~~  216 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-Q--GHTDGASCIDISN-DGTKLWTGGLDNT-VRSWDLRE-GR  216 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-C--CCSSCEEEEEECT-TSSEEEEEETTSE-EEEEETTT-TE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-e--cccCceEEEEECC-CCCEEEEEecCCc-EEEEECCC-Cc
Confidence            99999999 7889999999999999999987644433 2  3678999999998 8899999999998 99999987 44


Q ss_pred             ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307          247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  326 (339)
                      .+..+ .+...+.+++|+|++ .+|++++.|+.|++||+....             ......|...|.+++|+|+++.++
T Consensus       217 ~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~l~  281 (337)
T 1gxr_A          217 QLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD-------------KYQLHLHESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             EEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC-------------EEEECCCSSCEEEEEECTTSSEEE
T ss_pred             eEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC-------------eEEEcCCccceeEEEECCCCCEEE
Confidence            55554 467899999999999 699999999999999999877             456678899999999999999999


Q ss_pred             EEecCCeEEEEeC
Q 040307          327 AIAFVNKLQLLKV  339 (339)
Q Consensus       327 ~~~~d~~v~~w~v  339 (339)
                      +++.|+.|++|++
T Consensus       282 ~~~~dg~i~~~~~  294 (337)
T 1gxr_A          282 STGKDNLLNAWRT  294 (337)
T ss_dssp             EEETTSEEEEEET
T ss_pred             EecCCCcEEEEEC
Confidence            9999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-40  Score=278.75  Aligned_cols=253  Identities=19%  Similarity=0.254  Sum_probs=205.6

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSV  144 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~  144 (339)
                      .+|.+.|++++|+|++     ++||+|+ | +|+|||+.+++......+.+|.     .+|.+++|+|. ++++|++|+.
T Consensus        10 ~~H~~~V~~v~~s~~g-----~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~-----~~V~~v~~~~~~~~~~l~s~s~   79 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYG-----TRLATCSSDRSVKIFDVRNGGQILIADLRGHE-----GPVWQVAWAHPMYGNILASCSY   79 (316)
T ss_dssp             ----CCEEEEEECGGG-----CEEEEEETTTEEEEEEEETTEEEEEEEEECCS-----SCEEEEEECCGGGSSCEEEEET
T ss_pred             ccccCeEEEeeEcCCC-----CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC-----ccEEEEEeCCCCCCCEEEEEEC
Confidence            5899999999999999     8999987 5 9999999887644677888988     89999999852 4899999999


Q ss_pred             CCeEEEEECCCCe--eeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          145 DTTCVIWDIDREI--LETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       145 d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      |++|++||+++++  ....+.+|...|.+++|+ +  +.+|++++.|+.|++||++.............|...+.+++|+
T Consensus        80 D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           80 DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred             CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence            9999999998874  556677899999999999 3  6799999999999999998764332222333477889999999


Q ss_pred             cCC----------------CCeEEEEeeCCCeEEEEecCCCC--CceEEEecCCCCeeEEEeccCC---CCeEEEEeCCC
Q 040307          220 KAD----------------PRFMATVGMDSNKVVVLDIRFPT--NPVVVLSKHEGSVNGISWAPLY---GRRLCSVADDS  278 (339)
Q Consensus       220 p~~----------------~~~l~~~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg  278 (339)
                      |..                +++|++++.|+. |++||++...  .++..+.+|...|++++|+|++   ..+|++++.|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             cccCCccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence            842                478999999999 9999997532  3566788999999999999985   25899999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|+||++......        .........|...|.+++|+|+++.|++++.|+.|++|++
T Consensus       239 ~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          239 RVFIWTCDDASSN--------TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             EEEEEECSSTTCC--------CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             eEEEEEccCcccc--------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            9999999874200        0112344568889999999999999999999999999973

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-39  Score=278.13  Aligned_cols=275  Identities=15%  Similarity=0.210  Sum_probs=224.2

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S   97 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~   97 (339)
                      +.+++|++.     .+++++    .|+.|++|++....  ...  .....|...|.+++|+|++     .+|++++ + .
T Consensus        96 ~~~~~~s~~-----~l~~~~----~d~~v~lw~~~~~~--~~~--~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~  157 (401)
T 4aez_A           96 LNLLDWSNL-----NVVAVA----LERNVYVWNADSGS--VSA--LAETDESTYVASVKWSHDG-----SFLSVGLGNGL  157 (401)
T ss_dssp             CBCEEECTT-----SEEEEE----ETTEEEEEETTTCC--EEE--EEECCTTCCEEEEEECTTS-----SEEEEEETTSC
T ss_pred             EEEEeecCC-----CEEEEE----CCCeEEEeeCCCCc--EeE--eeecCCCCCEEEEEECCCC-----CEEEEECCCCe
Confidence            444555544     466666    59999998876543  332  3334589999999999999     8888887 4 9


Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeeeeeeeccCCceeEEEec-
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILETQLVAHDREVYDISWG-  175 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~-  175 (339)
                      |++||+.+++  ....+.+|.     ..|.+++|+   +++|++++.||.|++||++ .......+.+|...|.+++|+ 
T Consensus       158 i~iwd~~~~~--~~~~~~~~~-----~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  227 (401)
T 4aez_A          158 VDIYDVESQT--KLRTMAGHQ-----ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS  227 (401)
T ss_dssp             EEEEETTTCC--EEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEEECcCCe--EEEEecCCC-----CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence            9999999887  778888887     899999995   4799999999999999998 456677888999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEEec
Q 040307          176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVLSK  253 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~~~  253 (339)
                      ++++|++++.|+.|++||+++.+....+ .  .|...+.+++|+|....++++++  .|+. |++||++. .+++..+. 
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~--~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~-~~~~~~~~-  301 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTK-T--NHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAAT-GARVNTVD-  301 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEE-C--CCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTT-CCEEEEEE-
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEe-c--CCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCC-CCEEEEEe-
Confidence            7899999999999999999987644332 2  36789999999996667777765  6888 99999987 56666665 


Q ss_pred             CCCCeeEEEeccCCCCeEEEE--eCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307          254 HEGSVNGISWAPLYGRRLCSV--ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       254 ~~~~v~~~~~~p~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      +...|.+++|+|++ .+|+++  +.||.|++||+....          .........|...|.+++|+|+++.+++++.|
T Consensus       302 ~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~----------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          302 AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSG----------LTKQVDIPAHDTRVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTE----------EEEEEEEECCSSCCCEEEECTTSSEEEEECTT
T ss_pred             CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCcc----------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence            56789999999999 588874  489999999999865          11122355789999999999999999999999


Q ss_pred             CeEEEEeC
Q 040307          332 NKLQLLKV  339 (339)
Q Consensus       332 ~~v~~w~v  339 (339)
                      +.|++|++
T Consensus       371 g~i~iw~~  378 (401)
T 4aez_A          371 ENLKFWRV  378 (401)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEEEEC
Confidence            99999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.3e-39  Score=276.13  Aligned_cols=257  Identities=19%  Similarity=0.235  Sum_probs=207.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCc-------------cCCCCEEEEEEcC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTS-------------EFSSAITSFDWAG  133 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~  133 (339)
                      ..|...|.+++|+|++     ++||++++ .+++|++.+++  ....+..+...             .....|++++|+|
T Consensus        61 ~~h~~~V~~v~fspdg-----~~la~g~~~~v~i~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDG-----EYLATGCNKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             EECSSCCCEEEECTTS-----SEEEEECBSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECT
T ss_pred             cCCCCEEEEEEECCCC-----CEEEEEcCCcEEEEEecCCC--EEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence            4799999999999999     89999987 99999999887  55555544210             1113499999998


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCC
Q 040307          134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCP  212 (339)
Q Consensus       134 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  212 (339)
                       ++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+ ++++|++++.|+.|++||+++++....+.    +...
T Consensus       134 -dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~  208 (393)
T 1erj_A          134 -DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDG  208 (393)
T ss_dssp             -TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSC
T ss_pred             -CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCC
Confidence             99999999999999999999999999999999999999999 78999999999999999999887544432    3467


Q ss_pred             eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE-------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL-------SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       213 v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      +.+++|+|.++++|++++.|+. |++||++. +..+..+       .+|...|.+++|+|++ .+|++++.|+.|++||+
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~-v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRA-VRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSC-EEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEcCCCc-EEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEEC
Confidence            9999999888999999999999 99999987 4555555       5789999999999999 69999999999999999


Q ss_pred             cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...........+..........+|...|.+++|+|++.++++++.|+.|++|++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            875410000000001112245578999999999999999999999999999984

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-40  Score=288.67  Aligned_cols=309  Identities=13%  Similarity=0.079  Sum_probs=229.3

Q ss_pred             CCceeeee-e-ccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCC-C-cccceeeEeecCCCCceEEEEcC
Q 040307            7 KKPGVHTY-M-AQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPET-S-DFSADNRLIFDHPYTPTNIAFFP   81 (339)
Q Consensus         7 ~~~~~~~~-~-~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-~-~~~~~~~~~~~~~~~v~~l~~~~   81 (339)
                      +++.+..+ . |.++|.+++|+| +   +++||+|+    .|+.|+||++.... . ....  .....|...|.+++|+|
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~---~~~l~s~s----~dg~v~vwd~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~  121 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGE---TPYLITGS----DQGVIKIWNLKEIIVGEVYSS--SLTYDCSSTVTQITMIP  121 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSS---SCEEEEEE----TTSEEEEEEHHHHHTTCCCSC--SEEEECSSCEEEEEECT
T ss_pred             cceEEeeeccCCCCceEEEEECCCC---CCEEEEec----CCceEEEeECcccccCcccce--eeeccCCCCEEEEEEeC
Confidence            45566666 3 579999999999 8   99999999    79999999986511 1 1211  22357999999999999


Q ss_pred             CCCCCCCCeEEEeC-C-cEEEEeec---CCcceeEEEeecCC-------CccCCCCEEEEE--EcCCCCCEEEEEeCCCe
Q 040307           82 SEETLNPDIVATSG-D-SLRLWEIH---DDRTELKSLLNSNK-------TSEFSSAITSFD--WAGFDTRRVATCSVDTT  147 (339)
Q Consensus        82 ~~~~~~~~~la~~~-~-~i~iw~~~---~~~~~~~~~~~~~~-------~~~~~~~i~~~~--~~~~~~~~l~~~~~d~~  147 (339)
                      ++     .+|++++ | .|++||++   .++  ....+..+.       ..+....+.++.  ++| ++.+|++++.|+.
T Consensus       122 ~~-----~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~  193 (437)
T 3gre_A          122 NF-----DAFAVSSKDGQIIVLKVNHYQQES--EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSR  193 (437)
T ss_dssp             TS-----SEEEEEETTSEEEEEEEEEEEETT--EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSE
T ss_pred             CC-----CEEEEEeCCCEEEEEEeccccCCc--eeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCe
Confidence            99     7888887 4 99999995   443  222222211       000125677777  556 8899999999999


Q ss_pred             EEEEECCCCeeeeeeec--cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec---C
Q 040307          148 CVIWDIDREILETQLVA--HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK---A  221 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p---~  221 (339)
                      |++||+++++.+..+..  |...|++++|+ ++++|++++.|+.|++||++.++....+...  +...|.+++|+|   .
T Consensus       194 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~s~  271 (437)
T 3gre_A          194 VIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--DHAPITHVEVCQFYGK  271 (437)
T ss_dssp             EEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--TCEEEEEEEECTTTCT
T ss_pred             EEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--CCCceEEEEeccccCC
Confidence            99999999999999987  88999999999 7899999999999999999987644443323  557899997776   2


Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEEEec--------------------------CCCCeeEEEeccCCCCeEEEEe
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--------------------------HEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--------------------------~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                      ++.+|++++.|+. |++||++. .+.+..+.+                          |...|++++|+ ++ .+|++++
T Consensus       272 ~~~~l~s~~~dg~-i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~  347 (437)
T 3gre_A          272 NSVIVVGGSSKTF-LTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDE  347 (437)
T ss_dssp             TEEEEEEESTTEE-EEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEG
T ss_pred             CccEEEEEcCCCc-EEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecC
Confidence            6779999999998 99999987 444555543                          45568888998 65 6999999


Q ss_pred             CCCcEEEEEecCCCCCCCCCC---CCCcc----------------------cceeeecccceeEEEEecCC--CCceEEE
Q 040307          276 DDSRALIWEVVGPGYRSGNGG---PSGDV----------------------EPELCYQSMAEINVVRWSPL--ELDWIAI  328 (339)
Q Consensus       276 ~dg~v~iwd~~~~~~~~~~~~---~~~~~----------------------~~~~~~~~~~~i~~~~~~p~--~~~l~~~  328 (339)
                      .|+.|++||+...+.......   .....                      .......|...|++++|+++  +..|+++
T Consensus       348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~  427 (437)
T 3gre_A          348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC  427 (437)
T ss_dssp             GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred             CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence            999999999987661000000   00000                      00011128899999999998  6678899


Q ss_pred             ecCCeEEEEe
Q 040307          329 AFVNKLQLLK  338 (339)
Q Consensus       329 ~~d~~v~~w~  338 (339)
                      +.||.|+||+
T Consensus       428 ~~dG~I~iw~  437 (437)
T 3gre_A          428 DNSGLIGIFQ  437 (437)
T ss_dssp             ETTSCEEEEC
T ss_pred             cCCceEEEeC
Confidence            9999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.8e-39  Score=264.86  Aligned_cols=252  Identities=16%  Similarity=0.230  Sum_probs=205.3

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIVA   92 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~la   92 (339)
                      .|.++|.+++|+|+   +++||+|+    .|+.|+||++.........  .+ .+|.++|.+++|+|+  +     .+||
T Consensus         7 ~h~~~V~~~~~s~~---g~~las~s----~D~~v~iw~~~~~~~~~~~--~l-~gH~~~V~~v~~s~~~~g-----~~l~   71 (297)
T 2pm7_B            7 AHNEMIHDAVMDYY---GKRMATCS----SDKTIKIFEVEGETHKLID--TL-TGHEGPVWRVDWAHPKFG-----TILA   71 (297)
T ss_dssp             SCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEEBCSSCBCCCE--EE-CCCSSCEEEEEECCGGGC-----SEEE
T ss_pred             CCcCceEEEEECCC---CCEEEEEe----CCCEEEEEecCCCCcEEEE--EE-ccccCCeEEEEecCCCcC-----CEEE
Confidence            57899999999999   99999999    7999999988754333332  33 689999999999864  6     7899


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe--eeeeeeccC
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI--LETQLVAHD  166 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~  166 (339)
                      +|+ | +|++||+++++......+..|.     ..|.+++|+| +  +.+|++++.|+.|++||++++.  ....+.+|.
T Consensus        72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRWSQIAVHAVHS-----ASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             EEETTTEEEEEEBSSSCBCCCEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             EEcCCCEEEEEEcCCCceEEEEEeecCC-----CceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence            887 5 9999999987544666777777     8999999998 5  7899999999999999998763  235567899


Q ss_pred             CceeEEEecC--------------CcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCC--CCeEEEE
Q 040307          167 REVYDISWGG--------------FNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKAD--PRFMATV  229 (339)
Q Consensus       167 ~~v~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~--~~~l~~~  229 (339)
                      ..|.+++|++              +++|++++.|+.|++||+++..... .......|...|.+++|+|+.  +.+|+++
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            9999999994              3689999999999999998765322 222233488899999999943  5899999


Q ss_pred             eeCCCeEEEEecCCCCCc--eEEE--ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          230 GMDSNKVVVLDIRFPTNP--VVVL--SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       230 ~~d~~~i~i~d~~~~~~~--~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +.|+. |++||++....+  ...+  ..|...|.+++|+|++ .+|++++.|+.|+||+.....
T Consensus       226 s~D~~-v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~~g  287 (297)
T 2pm7_B          226 SQDRT-CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG  287 (297)
T ss_dssp             ETTSC-EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred             ECCCc-EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECCCC
Confidence            99999 999999863322  1223  4678899999999999 699999999999999987543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-39  Score=275.02  Aligned_cols=249  Identities=19%  Similarity=0.336  Sum_probs=198.9

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      ...|...|.+++|+|+   +.+|++ +    .||.|+||++............ ..+|...|.+++|+|++     ++|+
T Consensus        90 ~~~~~~~V~~~~~s~d---~~~l~~-s----~dg~v~lWd~~~~~~~~~~~~~-~~~h~~~V~~v~~spdg-----~~l~  155 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSE---KGILVA-S----DSGAVELWEILEKESLLVNKFA-KYEHDDIVKTLSVFSDG-----TQAV  155 (357)
T ss_dssp             EEECSSCEEEEEEETT---TEEEEE-E----TTSCEEEC--------CCCCEE-ECCCSSCEEEEEECSSS-----SEEE
T ss_pred             cCCCCCCEEEEEEcCC---CCEEEE-E----CCCEEEEeeccccceeEEEeec-cCCCCCCEEEEEECCCC-----CEEE
Confidence            3457789999999999   876654 5    4999999877655433332112 25899999999999999     8888


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--eccCCc
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VAHDRE  168 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~  168 (339)
                      +++ + .|++||+++++  .+..+.+|.     ..|++++|+|....++++++.|+.|++||+++++....+  ..+...
T Consensus       156 sgs~dg~v~iwd~~~~~--~~~~~~~h~-----~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~  228 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQKA--VLKSYNAHS-----SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI  228 (357)
T ss_dssp             EEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC
T ss_pred             EEeCCCeEEEEECCCCc--EEEEEcCCC-----CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc
Confidence            887 4 99999999887  788888888     899999999844468999999999999999998876655  356678


Q ss_pred             eeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          169 VYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       169 v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      +.+++|+ + +.+|++|+.|+.|++||+++++.... +..  +...|.+++|+|+++++|++++.|+. |+|||++. ++
T Consensus       229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~--~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-~~  303 (357)
T 4g56_B          229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAV--HSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-SE  303 (357)
T ss_dssp             EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECC--CSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-CE
T ss_pred             ccchhhhhcccceEEEeecccceeEEECCCCcEeEE-Eec--cceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-Cc
Confidence            9999999 3 67899999999999999998875444 333  67899999999966678999999999 99999986 44


Q ss_pred             ceEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCC
Q 040307          247 PVVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+ ...+|...|++++|+| ++ .+|++++.||+|++|++....
T Consensus       304 ~~-~~~~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          304 VF-RDLSHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EE-EECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC---
T ss_pred             Ee-EECCCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCC
Confidence            44 4557999999999999 56 699999999999999997765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.8e-38  Score=274.53  Aligned_cols=278  Identities=17%  Similarity=0.237  Sum_probs=226.8

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-   96 (339)
                      ....|+||++    ++||+|.     |++|+||+...  ++....... ..|...|++|+|+|++     ++||+|+ | 
T Consensus       107 y~~~l~wS~~----n~lAvgl-----d~tV~lWd~~t--g~~~~~~~~-~~~~~~V~sv~fspdg-----~~lasgs~Dg  169 (420)
T 4gga_A          107 YLNLVDWSSG----NVLAVAL-----DNSVYLWSASS--GDILQLLQM-EQPGEYISSVAWIKEG-----NYLAVGTSSA  169 (420)
T ss_dssp             TCBCEEECTT----SEEEEEE-----TTEEEEEETTT--CCEEEEEEC-CSTTCCEEEEEECTTS-----SEEEEEETTS
T ss_pred             cceeEEECCC----CEEEEEe-----CCEEEEEECCC--CCEEEEEEe-cCCCCcEEEEEECCCC-----CEEEEEECCC
Confidence            3567999976    4888888     99999977654  343331122 4688899999999999     8999987 4 


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG  175 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~  175 (339)
                      .|+|||+++++  .+..+.+|.     ..+.++.|+   +.+|++|+.|+.+++||..... .+..+.+|...+..+.|+
T Consensus       170 ~v~iWd~~~~~--~~~~~~~h~-----~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          170 EVQLWDVQQQK--RLRNMTSHS-----ARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             CEEEEETTTTE--EEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             eEEEEEcCCCc--EEEEEeCCC-----CceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            99999999987  788888888     889998885   4799999999999999987654 567788999999999999


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEE
Q 040307          176 -GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       176 -~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~  251 (339)
                       ++.++++++.|+.+++||....+... .+.....+...|.+++|+|.+..++++++  .|+. |++||+++ +.++..+
T Consensus       240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t-~~~~~~~  317 (420)
T 4gga_A          240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCS-GACLSAV  317 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTT-TEEEEEE
T ss_pred             CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCc-cccceee
Confidence             79999999999999999998875322 12222347789999999997778877653  6777 99999987 5566666


Q ss_pred             ecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          252 SKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       252 ~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      .. ...+.++.|+|++. .+++++  .|+.|+|||+.+..            ....+.+|...|++++|+|+|+.|++++
T Consensus       318 ~~-~~~v~~~~~~~~~~-~lv~~sg~~d~~I~iwd~~~~~------------~v~~l~gH~~~V~~l~~spdg~~l~S~s  383 (420)
T 4gga_A          318 DA-HSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMA------------KVAELKGHTSRVLSLTMSPDGATVASAA  383 (420)
T ss_dssp             EC-SSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             cc-ccceeeeeecCCCC-eEEEEEecCCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            65 45789999999984 666654  78999999999877            2335568999999999999999999999


Q ss_pred             cCCeEEEEeC
Q 040307          330 FVNKLQLLKV  339 (339)
Q Consensus       330 ~d~~v~~w~v  339 (339)
                      .|++|+||++
T Consensus       384 ~D~tvriWdv  393 (420)
T 4gga_A          384 ADETLRLWRC  393 (420)
T ss_dssp             TTTEEEEECC
T ss_pred             cCCeEEEEEC
Confidence            9999999986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.4e-39  Score=280.73  Aligned_cols=299  Identities=16%  Similarity=0.230  Sum_probs=218.5

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-------CcccceeeEeecCC------------CCce
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-------SDFSADNRLIFDHP------------YTPT   75 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~------------~~v~   75 (339)
                      .+.+.|.+++|+|+   +++||+|+    .||.|+||++....       ..+.....+ .+|.            ..|.
T Consensus        26 ~~~~~V~~v~~s~~---g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           26 AEADIISTVEFNHS---GELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             CGGGSEEEEEECSS---SSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCC
T ss_pred             cccCcEEEEEECCC---CCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceE
Confidence            34689999999999   99999999    79999999987544       222222233 5787            8899


Q ss_pred             EEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce-------------------------------------eEEE-ee
Q 040307           76 NIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE-------------------------------------LKSL-LN  115 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~-------------------------------------~~~~-~~  115 (339)
                      +++|+|++..   .+|++++ | .|++|++.+.+..                                     +... ..
T Consensus        98 ~l~~~~~~~~---~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (447)
T 3dw8_B           98 KIRWLPQKNA---AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN  174 (447)
T ss_dssp             EEEECCCCSS---SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred             EEEEcCCCCc---ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence            9999999721   2555555 6 9999999864311                                     0111 24


Q ss_pred             cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-Ceeee-------eeeccCCceeEEEec-CC-cEEEEEeC
Q 040307          116 SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-EILET-------QLVAHDREVYDISWG-GF-NVFASVSG  185 (339)
Q Consensus       116 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~-------~~~~~~~~v~~~~~~-~~-~~l~~~~~  185 (339)
                      +|.     ..|++++|+| ++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+ ++ ++|++++.
T Consensus       175 ~h~-----~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          175 AHT-----YHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             CCS-----SCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred             CCC-----cceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence            455     8999999998 99999998 799999999984 33443       356899999999999 55 89999999


Q ss_pred             CCcEEEEECCCCcce---eeEEeCCCCCC------------CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          186 DCSVRVFDLRDKERS---TIIYENPVQDC------------PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       186 d~~i~i~d~~~~~~~---~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      |+.|++||+++.+..   ...+..  +..            .|.+++|+| ++++|++++. +. |++||++...+++..
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~-v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LS-VKVWDLNMENRPVET  322 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SE-EEEEETTCCSSCSCC
T ss_pred             CCeEEEEECcCCccccceeeEecc--CCCccccccccccCceEEEEEECC-CCCEEEEeeC-Ce-EEEEeCCCCccccce
Confidence            999999999988741   222333  333            899999998 9999999888 77 999999876778888


Q ss_pred             EecCCCC---------------eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC-----CCCCCCCccc--------
Q 040307          251 LSKHEGS---------------VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS-----GNGGPSGDVE--------  302 (339)
Q Consensus       251 ~~~~~~~---------------v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~--------  302 (339)
                      +..|...               +..++|+|++ .+|++++.||.|++||+...+...     ....+.....        
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG  401 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred             eeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence            8888642               2349999999 599999999999999998765200     0000000000        


Q ss_pred             -------ceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          303 -------PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       303 -------~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                             ......+...|..++|+|++..|++++.+ .+.+|.
T Consensus       402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~-~~~~~~  443 (447)
T 3dw8_B          402 KRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN-NLYIFQ  443 (447)
T ss_dssp             CCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS-CEEEEE
T ss_pred             CcccccccccccccCCceeEEEECCCCCEEEEEecc-eeeeec
Confidence                   00122345679999999999855555554 577764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.1e-39  Score=270.96  Aligned_cols=252  Identities=17%  Similarity=0.192  Sum_probs=202.5

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIVA   92 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~la   92 (339)
                      .|.++|++++|+|+   +++||+|+    .|++|+||++.........  .+ .+|.+.|.+++|+|+  +     .+|+
T Consensus        11 ~H~~~V~~v~~s~~---g~~lasgs----~D~~v~lwd~~~~~~~~~~--~l-~gH~~~V~~v~~~~~~~~-----~~l~   75 (316)
T 3bg1_A           11 SHEDMIHDAQMDYY---GTRLATCS----SDRSVKIFDVRNGGQILIA--DL-RGHEGPVWQVAWAHPMYG-----NILA   75 (316)
T ss_dssp             ---CCEEEEEECGG---GCEEEEEE----TTTEEEEEEEETTEEEEEE--EE-ECCSSCEEEEEECCGGGS-----SCEE
T ss_pred             cccCeEEEeeEcCC---CCEEEEEe----CCCeEEEEEecCCCcEEEE--EE-cCCCccEEEEEeCCCCCC-----CEEE
Confidence            57899999999999   99999999    7999999887654322221  33 689999999999864  6     7888


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe---eeeeeecc
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI---LETQLVAH  165 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~  165 (339)
                      +|+ | +|++||+++++......+.+|.     ..|++++|+| +  +.+|++|+.|+.|++||++.+.   ....+.+|
T Consensus        76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGTWEKSHEHAGHD-----SSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             EEETTSCEEEECCSSSCCCEEEEECCCS-----SCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             EEECCCEEEEEECCCCcceEEEEccCCC-----CceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            887 5 9999999887545667778887     8999999998 5  7899999999999999998763   23456789


Q ss_pred             CCceeEEEecC------------------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC---CC
Q 040307          166 DREVYDISWGG------------------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD---PR  224 (339)
Q Consensus       166 ~~~v~~~~~~~------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~  224 (339)
                      ...|.+++|++                  +.+|++++.|+.|++||++.............|...|.+++|+|..   +.
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence            99999999984                  2689999999999999997654222333334588899999999932   37


Q ss_pred             eEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          225 FMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +|++++.|+. |++||++...   .....+..|...|.+++|+|++ .+|++++.|+.|+||+.....
T Consensus       230 ~las~s~D~~-v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~~g  295 (316)
T 3bg1_A          230 TIASCSQDGR-VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESVDG  295 (316)
T ss_dssp             EEEEEETTCE-EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECTTS
T ss_pred             eEEEEcCCCe-EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECCCC
Confidence            8999999999 9999987521   1234567789999999999999 699999999999999987543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.2e-38  Score=266.86  Aligned_cols=243  Identities=16%  Similarity=0.310  Sum_probs=204.2

Q ss_pred             ecCCCCceEEEE-----cC-CCCCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCC
Q 040307           68 FDHPYTPTNIAF-----FP-SEETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGF  134 (339)
Q Consensus        68 ~~~~~~v~~l~~-----~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~  134 (339)
                      .+|.+.|++++|     ++ ++     .+|++|+ | +|++|++...+     ..+...+.+|.     ..|.+++|+| 
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~-----~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~-----~~V~~~~~~~-   86 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDS-----PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN-----HFVSDLALSQ-   86 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCC-----CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS-----SCEEEEEECS-
T ss_pred             ccchhhhhheeeEEEeecCCCC-----CEEEEEcCCCEEEEEECCcCCcccccccccchhccCC-----CceEEEEECC-
Confidence            689999999999     66 67     8999988 5 99999997643     23556778887     8999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL  213 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  213 (339)
                      ++.++++|+.|++|++||+++++.+..+.+|...|.+++|+ ++++|++++.|+.|++||+.... .........|...+
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWV  165 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCcee
Confidence            99999999999999999999999999999999999999999 78999999999999999998433 22222223477889


Q ss_pred             EEEEEecCC---------CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          214 LRLEWNKAD---------PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       214 ~~~~~~p~~---------~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      .+++|+|..         +.+|++++.|+. |++||.+  ......+.+|...|.+++|+|++ ++|++|+.||.|++||
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGR-LKVWNTN--FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWD  241 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSE-EEEEETT--TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCE-EEEEcCC--CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEE
Confidence            999999833         278999999998 9999953  45667888999999999999999 6999999999999999


Q ss_pred             ecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          285 VVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +....            .+.....+...|.+++|+|+++ +++++.|+.|++|++
T Consensus       242 ~~~~~------------~~~~~~~~~~~v~~v~~sp~~~-~la~~~d~~v~iw~~  283 (343)
T 2xzm_R          242 ILNLT------------YPQREFDAGSTINQIAFNPKLQ-WVAVGTDQGVKIFNL  283 (343)
T ss_dssp             SSCCS------------SCSEEEECSSCEEEEEECSSSC-EEEEEESSCEEEEES
T ss_pred             CCCCc------------ccceeecCCCcEEEEEECCCCC-EEEEECCCCEEEEEe
Confidence            95544            2344445566799999999986 667778999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.9e-38  Score=266.68  Aligned_cols=244  Identities=18%  Similarity=0.284  Sum_probs=210.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc--ccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD--FSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      +...|.+++|+|+   +.+||+|+    .|+.+++|++......  ......+ ..|...|.+++|+|++     ..|++
T Consensus       105 ~~~~v~~~~~sp~---g~~lasg~----~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-----~~l~t  171 (354)
T 2pbi_B          105 PCTWVMACAYAPS---GCAIACGG----LDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSD-----MQILT  171 (354)
T ss_dssp             SSSCCCEEEECTT---SSEEEEES----TTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSS-----SEEEE
T ss_pred             CCCCEEEEEECCC---CCEEEEee----CCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCC-----CEEEE
Confidence            4578999999999   99999999    7999999988654321  1111123 5799999999999999     77777


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      ++ | +|++||+++++  .+..+.+|.     ..|.+++|+|. ++++|++|+.||.|++||+++++++..+..|...|+
T Consensus       172 ~s~D~~v~lwd~~~~~--~~~~~~~h~-----~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          172 ASGDGTCALWDVESGQ--LLQSFHGHG-----ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN  244 (354)
T ss_dssp             EETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EeCCCcEEEEeCCCCe--EEEEEcCCC-----CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence            76 5 99999999987  788888888     89999999873 468999999999999999999999999999999999


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      +++|+ ++++|++++.|++|++||++..+.... +....+...+.+++|+| ++.+|++++.|+. |++||+.. +..+.
T Consensus       245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~-i~vwd~~~-~~~~~  320 (354)
T 2pbi_B          245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAI-YSKESIIFGASSVDFSL-SGRLLFAGYNDYT-INVWDVLK-GSRVS  320 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-CSEEE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCCCcccceeEEEEeC-CCCEEEEEECCCc-EEEEECCC-CceEE
Confidence            99999 789999999999999999998764433 33323345789999998 9999999999999 99999987 66788


Q ss_pred             EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      .+.+|...|.+++|+|++ .+|++|+.|+.|+||+
T Consensus       321 ~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred             EEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence            899999999999999999 6999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.3e-38  Score=264.06  Aligned_cols=241  Identities=15%  Similarity=0.211  Sum_probs=205.5

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .+|.+.|.+++|+|++.    .+|++|+ | +|++|++....   ..++..+.+|.     ..|.+++|+| ++++|++|
T Consensus        14 ~gH~~~V~~l~~~~~~~----~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~s~-dg~~l~s~   83 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQP----NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-----HIVQDCTLTA-DGAYALSA   83 (319)
T ss_dssp             CCCSSCEEEEEECSSCT----TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-----SCEEEEEECT-TSSEEEEE
T ss_pred             ccccceEEEEEccCCCc----cEEEEecCCccEEEecCCCCCccccccceEEeCCc-----ccEEEEEECC-CCCEEEEE
Confidence            68999999999999763    7888887 5 99999997543   23567788888     8999999998 99999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                      +.|++|++||+++++.+..+.+|...|.+++|+ ++.+|++++.|+.|++||++... . ....  .|...+.+++|+|.
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-~-~~~~--~h~~~v~~~~~~~~  159 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-L-ATLL--GHNDWVSQVRVVPN  159 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-E-EEEC--CCSSCEEEEEECCC
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-E-EEEe--ccCCcEEEEEEccC
Confidence            999999999999999999999999999999999 78999999999999999997543 2 2222  37789999999983


Q ss_pred             -----CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307          222 -----DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG  296 (339)
Q Consensus       222 -----~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  296 (339)
                           ++..+++++.|+. |++||++. .+....+.+|...|.+++|+|++ ++|++++.||.|++||+....       
T Consensus       160 ~~~~~~~~~l~s~~~d~~-i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~-------  229 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKM-VKAWNLNQ-FQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKK-------  229 (319)
T ss_dssp             ------CCEEEEEETTSC-EEEEETTT-TEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE-------
T ss_pred             CCCCCCccEEEEEeCCCE-EEEEECCc-chhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------
Confidence                 3458999999999 99999987 56677888999999999999999 699999999999999999876       


Q ss_pred             CCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                            +.....+...|.+++|+|++.. ++++.++.+++|++
T Consensus       230 ------~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~i~v~~~  265 (319)
T 3frx_A          230 ------AMYTLSAQDEVFSLAFSPNRYW-LAAATATGIKVFSL  265 (319)
T ss_dssp             ------EEEEEECCSCEEEEEECSSSSE-EEEEETTEEEEEEE
T ss_pred             ------EEEEecCCCcEEEEEEcCCCCE-EEEEcCCCcEEEEe
Confidence                  5555556678999999999974 45555667999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-39  Score=278.38  Aligned_cols=244  Identities=16%  Similarity=0.248  Sum_probs=210.5

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|++++|+|++     ++|++|+ | +|+|||+.+++  ....+..|.     ..|.+++|+| ++++|++|+.|
T Consensus        63 ~gH~~~V~~~~~sp~~-----~~l~s~s~D~~v~iWd~~~~~--~~~~~~~h~-----~~v~~~~~s~-~g~~las~~~d  129 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEK-----NWIVSASQDGRLIVWNALTSQ--KTHAIKLHC-----PWVMECAFAP-NGQSVACGGLD  129 (380)
T ss_dssp             CCCSSCEEEEEECTTS-----SCEEEEETTSEEEEEETTTTE--EEEEEECCC-----TTCCCCEECT-TSSEEEECCSS
T ss_pred             cccccEEEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc--cceEEecCC-----CCEEEEEECC-CCCEEEEeeCC
Confidence            6899999999999999     8888887 5 99999999887  778888887     8899999998 99999999999


Q ss_pred             CeEEEEECCCCe-------eeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEe--CCCCCCCeE
Q 040307          146 TTCVIWDIDREI-------LETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYE--NPVQDCPLL  214 (339)
Q Consensus       146 ~~v~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~v~  214 (339)
                      +.|++||+.+..       ....+.+|.+.+.++.|++  +..|++++.|++|++||+++++....+..  ...|...+.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            999999986532       3456778999999999993  56899999999999999999875544321  134778999


Q ss_pred             EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307          215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN  294 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  294 (339)
                      +++|+|.++++|++|+.|+. |++||++....++..+.+|...|.+++|+|++ .+|++++.||.|++||++.+.     
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~-v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~-----  282 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTT-VRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH-----  282 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSC-EEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE-----
T ss_pred             EEEeecCCCCEEEEEECCCe-EEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc-----
Confidence            99999878999999999999 99999987677889999999999999999999 699999999999999999876     


Q ss_pred             CCCCCcccceeee--------cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          295 GGPSGDVEPELCY--------QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       295 ~~~~~~~~~~~~~--------~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                              +....        .+...|++++|+|+++++++++.|+.|++|++
T Consensus       283 --------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          283 --------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             --------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             --------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence                    22211        12235899999999999999999999999984

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-39  Score=277.42  Aligned_cols=289  Identities=11%  Similarity=0.160  Sum_probs=233.5

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |...|.+++|+|+   +++|++|+    .++.|++|+  .......   .+ ..|...|.+++|+|++     .+|++++
T Consensus       107 ~~~~v~~~~~s~~---~~~l~~~~----~dg~i~i~~--~~~~~~~---~~-~~~~~~v~~~~~~~~~-----~~l~~~~  168 (425)
T 1r5m_A          107 TTNQVTCLAWSHD---GNSIVTGV----ENGELRLWN--KTGALLN---VL-NFHRAPIVSVKWNKDG-----THIISMD  168 (425)
T ss_dssp             -CBCEEEEEECTT---SSEEEEEE----TTSCEEEEE--TTSCEEE---EE-CCCCSCEEEEEECTTS-----SEEEEEE
T ss_pred             CCCceEEEEEcCC---CCEEEEEe----CCCeEEEEe--CCCCeee---ec-cCCCccEEEEEECCCC-----CEEEEEe
Confidence            3569999999999   99999999    799999987  2222222   23 5799999999999999     7787776


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCC---------------EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSA---------------ITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL  158 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~  158 (339)
                       + .|++|++.+++  ....+..+.     ..               +.++.|+| + ..+++++.+|.|++||+++++.
T Consensus       169 ~d~~i~iwd~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~  239 (425)
T 1r5m_A          169 VENVTILWNVISGT--VMQHFELKE-----TGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTP  239 (425)
T ss_dssp             TTCCEEEEETTTTE--EEEEECCC--------------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSC
T ss_pred             cCCeEEEEECCCCc--EEEEeeccc-----cCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCce
Confidence             4 99999998886  666666655     33               88999997 4 5689999999999999999998


Q ss_pred             eeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307          159 ETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV  237 (339)
Q Consensus       159 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~  237 (339)
                      +..+..|...|.+++|+ ++++|++++.|+.|++||+++.+....+ .  .+...+.+++|+| ++ ++++++.++. |+
T Consensus       240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~--~~~~~i~~~~~~~-~~-~l~~~~~d~~-i~  313 (425)
T 1r5m_A          240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF-Y--GHSQSIVSASWVG-DD-KVISCSMDGS-VR  313 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE-C--CCSSCEEEEEEET-TT-EEEEEETTSE-EE
T ss_pred             eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe-c--CCCccEEEEEECC-CC-EEEEEeCCCc-EE
Confidence            88888999999999999 7889999999999999999987754443 2  2678999999998 66 9999999998 99


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC--CCCCCCCCCc-----ccce-eeecc
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY--RSGNGGPSGD-----VEPE-LCYQS  309 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~-----~~~~-~~~~~  309 (339)
                      +||++. .+++..+..|...|.+++|+|++ .+|++++.||.|++||+.....  ..........     ..+. ....|
T Consensus       314 i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (425)
T 1r5m_A          314 LWSLKQ-NTLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS  391 (425)
T ss_dssp             EEETTT-TEEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred             EEECCC-CcEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence            999987 66788888999999999999999 6999999999999999987541  0000000000     0122 33456


Q ss_pred             cc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          310 MA--EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       310 ~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..  .|++++|+|++++|++++.|+.|++|++
T Consensus       392 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          392 QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             TCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             ccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence            55  9999999999998999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.5e-38  Score=296.88  Aligned_cols=283  Identities=16%  Similarity=0.198  Sum_probs=243.2

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|.+++|+|+   +.+||+|+    .+|.|+||++...  ....  .+ ..|...|.+++|+|++     ++|+++
T Consensus        11 ~h~~~v~~i~~sp~---~~~la~~~----~~g~v~iwd~~~~--~~~~--~~-~~~~~~v~~~~~s~~~-----~~l~~~   73 (814)
T 3mkq_A           11 NRSDRVKGIDFHPT---EPWVLTTL----YSGRVEIWNYETQ--VEVR--SI-QVTETPVRAGKFIARK-----NWIIVG   73 (814)
T ss_dssp             EECSCEEEEEECSS---SSEEEEEE----TTSEEEEEETTTT--EEEE--EE-ECCSSCEEEEEEEGGG-----TEEEEE
T ss_pred             cCCCceEEEEECCC---CCEEEEEe----CCCEEEEEECCCC--ceEE--EE-ecCCCcEEEEEEeCCC-----CEEEEE
Confidence            47899999999999   99999999    7999999887543  3322  33 5799999999999999     888888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCceeE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREVYD  171 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v~~  171 (339)
                      + + .|++|++.+++  ....+.+|.     ..|++++|+| ++.+|++++.||.|++||++++ .....+.+|...|.+
T Consensus        74 ~~dg~i~vw~~~~~~--~~~~~~~~~-----~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  145 (814)
T 3mkq_A           74 SDDFRIRVFNYNTGE--KVVDFEAHP-----DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (814)
T ss_dssp             ETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred             eCCCeEEEEECCCCc--EEEEEecCC-----CCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence            7 4 99999999887  778888888     8999999998 9999999999999999999887 667788889999999


Q ss_pred             EEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          172 ISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       172 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      ++|++  ++.|++++.|+.|++||+++..........  +...+..++|+|. ++.+|++++.++. |++||++. ..++
T Consensus       146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~-~~~~  221 (814)
T 3mkq_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT-KSCV  221 (814)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTT-TEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCC-CcEE
Confidence            99994  679999999999999999887755554443  4478999999973 6789999999998 99999987 6678


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce-EE
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW-IA  327 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~~  327 (339)
                      ..+.+|...|.+++|+|++ .+|++++.||.|++||+....            .......+...|.+++|+|++..+ ++
T Consensus       222 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~  288 (814)
T 3mkq_A          222 ATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK------------VEKTLNVGLERSWCIATHPTGRKNYIA  288 (814)
T ss_dssp             EEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCS------------EEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred             EEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc------------EEEEeecCCCcEEEEEEccCCCceEEE
Confidence            8899999999999999999 599999999999999998876            223455677899999999998764 77


Q ss_pred             EecCCeEEEEeC
Q 040307          328 IAFVNKLQLLKV  339 (339)
Q Consensus       328 ~~~d~~v~~w~v  339 (339)
                      ++.++.+.+|++
T Consensus       289 ~~~~~~~~~~~~  300 (814)
T 3mkq_A          289 SGFDNGFTVLSL  300 (814)
T ss_dssp             EEETTEEEEEEC
T ss_pred             EEeCCCEEEEEc
Confidence            888888888864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.3e-38  Score=266.53  Aligned_cols=276  Identities=12%  Similarity=0.075  Sum_probs=230.5

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVAT   93 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~   93 (339)
                      .|.+.|.+++|+|+   +++|++|+    .|+.|+||+++........  .....|...|.+++|+|++     . +|++
T Consensus         9 ~h~~~v~~~~~s~~---~~~l~~~~----~d~~v~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-----~~~l~~   74 (342)
T 1yfq_A            9 APKDYISDIKIIPS---KSLLLITS----WDGSLTVYKFDIQAKNVDL--LQSLRYKHPLLCCNFIDNT-----DLQIYV   74 (342)
T ss_dssp             CCSSCEEEEEEEGG---GTEEEEEE----TTSEEEEEEEETTTTEEEE--EEEEECSSCEEEEEEEESS-----SEEEEE
T ss_pred             CCCCcEEEEEEcCC---CCEEEEEc----CCCeEEEEEeCCCCccccc--eeeeecCCceEEEEECCCC-----CcEEEE
Confidence            57889999999999   99999999    7999999998765532222  2235899999999999999     8 8888


Q ss_pred             eC-C-cEEEEee-cCCcceeEEEeec--CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC---------Ceee
Q 040307           94 SG-D-SLRLWEI-HDDRTELKSLLNS--NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR---------EILE  159 (339)
Q Consensus        94 ~~-~-~i~iw~~-~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~---------~~~~  159 (339)
                      ++ + .|++|++ .+++   ...+..  |.     ..|.+++|+|  +++|++++.|+.|++||+++         ++++
T Consensus        75 ~~~dg~i~~wd~~~~~~---~~~~~~~~~~-----~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           75 GTVQGEILKVDLIGSPS---FQALTNNEAN-----LGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EETTSCEEEECSSSSSS---EEECBSCCCC-----SCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EcCCCeEEEEEeccCCc---eEeccccCCC-----CceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence            87 4 9999999 7775   356666  76     8999999997  88999999999999999987         7777


Q ss_pred             eeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCC-CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307          160 TQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRD-KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV  238 (339)
Q Consensus       160 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i  238 (339)
                      ..+. |...|.+++|++.. +++++.|+.|++||++. .......... .+...+.+++|+|.+++++++++.++. |++
T Consensus       145 ~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i  220 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDGR-VAV  220 (342)
T ss_dssp             SSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTSE-EEE
T ss_pred             eEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecCCc-EEE
Confidence            7776 88999999999444 99999999999999998 5533322222 366789999999636789999999998 999


Q ss_pred             EecCCC-----CCceEEEecCCC---------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          239 LDIRFP-----TNPVVVLSKHEG---------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       239 ~d~~~~-----~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      |+++..     .++...+..|..         .|.+++|+|++ .+|++++.||.|++||+...+            ...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~------------~~~  287 (342)
T 1yfq_A          221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK------------KIK  287 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE------------EEE
T ss_pred             EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHh------------Hhh
Confidence            999875     377888888865         99999999999 599999999999999998877            222


Q ss_pred             eeecc-cceeEEEEecCCCCceEEEecCCe
Q 040307          305 LCYQS-MAEINVVRWSPLELDWIAIAFVNK  333 (339)
Q Consensus       305 ~~~~~-~~~i~~~~~~p~~~~l~~~~~d~~  333 (339)
                      ....| ...|.+++  |+++.|++++.|+.
T Consensus       288 ~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          288 NFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             ECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             hhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            44566 89999999  99998999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.7e-37  Score=257.40  Aligned_cols=277  Identities=17%  Similarity=0.229  Sum_probs=221.6

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S   97 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~   97 (339)
                      ..+|+||++   + +||+|.     |++|+||+...  ++....... ..|...|++++|+|++     ++||+|+ | .
T Consensus        28 ~~~l~WS~~---~-~lAvg~-----D~tV~iWd~~t--g~~~~~~~~-~~~~~~V~~v~~~~~~-----~~l~sgs~Dg~   90 (318)
T 4ggc_A           28 LNLVDWSSG---N-VLAVAL-----DNSVYLWSASS--GDILQLLQM-EQPGEYISSVAWIKEG-----NYLAVGTSSAE   90 (318)
T ss_dssp             CBCEEECTT---S-EEEEEE-----TTEEEEEETTT--CCEEEEEEC-CSTTCCEEEEEECTTS-----SEEEEEETTSE
T ss_pred             ceEEEECCC---C-EEEEEe-----CCEEEEEECCC--CCEEEEEEe-cCCCCeEEEEEECCCC-----CEEEEEECCCc
Confidence            567999988   6 788877     99999987654  333331122 4688899999999999     8999987 4 9


Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec-
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG-  175 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~-  175 (339)
                      |++|++++++  .+..+.+|.     ..+.++.+   ++..+++++.++.+++|+..... .+..+.+|...+..+.++ 
T Consensus        91 v~iw~~~~~~--~~~~~~~h~-----~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           91 VQLWDVQQQK--RLRNMTSHS-----ARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             EEEEETTTTE--EEEEEECCS-----SCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEeecCCce--eEEEecCcc-----ceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999987  788888887     77777665   45899999999999999987664 556778899999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEE--EEeeCCCeEEEEecCCCCCceEEEe
Q 040307          176 GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMA--TVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~--~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      ++++|++++.|+.|++||+++++... .......+...+..++++|.+...+.  +++.++. |++||.+. .. .....
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~-~~-~~~~~  237 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCS-GA-CLSAV  237 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTT-CC-EEEEE
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccc-cc-ccccc
Confidence            79999999999999999999865322 12222346678999999996666654  3455666 99999986 33 33445


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      .+...+..+.|+|++. .+++++  .|+.|+|||+.+.+            ....+.+|.+.|++++|+|++++|++++.
T Consensus       238 ~~~~~v~~~~~~~~~~-~~~~~sg~~d~~i~iwd~~~~~------------~~~~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMA------------KVAELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             ECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             cceeeeeeeeeccccc-ceEEEEEcCCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            5678899999999985 665544  79999999999877            23355679999999999999999999999


Q ss_pred             CCeEEEEeC
Q 040307          331 VNKLQLLKV  339 (339)
Q Consensus       331 d~~v~~w~v  339 (339)
                      |++|+||++
T Consensus       305 D~~v~iWd~  313 (318)
T 4ggc_A          305 DETLRLWRC  313 (318)
T ss_dssp             TTEEEEECC
T ss_pred             CCeEEEEEC
Confidence            999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=262.00  Aligned_cols=250  Identities=22%  Similarity=0.280  Sum_probs=196.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEe-ec-CCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLL-NS-NKTSEFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                      .+|.+.|.+++|+|       .+||+|+ | .|++|++..+.......+ .+ |.     ..|.+++|+| ++++|++|+
T Consensus        11 ~~h~~~v~~~~~s~-------~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~-----~~v~~v~~sp-~~~~las~s   77 (330)
T 2hes_X           11 KLYKEKIWSFDFSQ-------GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK-----KAIRSVAWRP-HTSLLAAGS   77 (330)
T ss_dssp             ECCSSCEEEEEEET-------TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCC-----SCEEEEEECT-TSSEEEEEE
T ss_pred             ccCCCceeeeccCC-------CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc-----CCEEEEEECC-CCCEEEEEe
Confidence            68999999999987       4677776 5 999999987654455555 33 66     8999999998 899999999


Q ss_pred             CCCeEEEEECCC-------CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCCCCeE
Q 040307          144 VDTTCVIWDIDR-------EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQDCPLL  214 (339)
Q Consensus       144 ~d~~v~i~d~~~-------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~  214 (339)
                      .|++|++||++.       .+.+..+.+|...|.+++|+ ++++|++++.|+.|++||++... ....+.....|...|.
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence            999999999853       34567788999999999999 78999999999999999996432 2222222234788999


Q ss_pred             EEEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccC--CCCeEEEEeCCCcEEEEEecCCCCC
Q 040307          215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPL--YGRRLCSVADDSRALIWEVVGPGYR  291 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~iwd~~~~~~~  291 (339)
                      +++|+| ++.+|++++.|+. |++||.+... +++..+.+|...|.+++|+|+  + .+|++++.|++|++||+......
T Consensus       158 ~v~~~p-~~~~l~s~s~D~~-i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          158 HVIWHP-SEALLASSSYDDT-VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             EEEECS-SSSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTT
T ss_pred             EEEECC-CCCEEEEEcCCCe-EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCcc
Confidence            999999 8999999999999 9999987532 567889999999999999998  5 58999999999999999875300


Q ss_pred             CCCCCCCCcccce-eee-cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          292 SGNGGPSGDVEPE-LCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       292 ~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..     ...... ... .|...|.+++|++++ .+++++.|+.|++|++
T Consensus       235 ~~-----~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          235 DQ-----QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE  278 (330)
T ss_dssp             SC-----EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred             cc-----ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence            00     000111 222 388899999999876 6889999999999973

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2e-38  Score=273.96  Aligned_cols=287  Identities=14%  Similarity=0.194  Sum_probs=226.4

Q ss_pred             CCeeEEEeeecCCcccEEE-EeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC-CCCCCCCCeEEEeC
Q 040307           18 WPISTVAWSVRHDRKSRLA-VGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP-SEETLNPDIVATSG   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la-~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~~~la~~~   95 (339)
                      .....++++|+   ...++ +|+    .+|.|+||+++..+........+ .+|...|.+++|+| ++     .+|++|+
T Consensus        35 ~~~~~~~~~~~---~~~~~~~~~----~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~-----~~l~s~s  101 (402)
T 2aq5_A           35 WDSGFCAVNPK---FMALICEAS----GGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHND-----NVIASGS  101 (402)
T ss_dssp             CSSCSEEECSS---EEEEEBCCS----SSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCT-----TEEEEEE
T ss_pred             cCCCcEEECCC---eEEEEEEEc----CCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCC-----CEEEEEe
Confidence            44556888988   55444 456    69999999886543322221122 58999999999999 77     8999887


Q ss_pred             -C-cEEEEeecCCcc-----eeEEEeecCCCccCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCeeeeee--ecc
Q 040307           96 -D-SLRLWEIHDDRT-----ELKSLLNSNKTSEFSSAITSFDWAGFDT-RRVATCSVDTTCVIWDIDREILETQL--VAH  165 (339)
Q Consensus        96 -~-~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~  165 (339)
                       | .|++|++.++..     .+...+.+|.     ..|.+++|+| ++ ++|++++.|+.|++||+++++.+..+  ..|
T Consensus       102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLPLREPVITLEGHT-----KRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             TTSEEEEEECCTTCCSSCBCSCSEEEECCS-----SCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             CCCeEEEEEccCCCCccccCCceEEecCCC-----CeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence             4 999999988742     3677788888     8999999998 65 79999999999999999999998888  789


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC-CeEEEEEecCCCCeEEEE---eeCCCeEEEEe
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC-PLLRLEWNKADPRFMATV---GMDSNKVVVLD  240 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~---~~d~~~i~i~d  240 (339)
                      ...|.+++|+ ++++|++++.|+.|++||+++++....+...  |.. .+.+++|+| ++.+|++|   +.++. |++||
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~-i~iwd  251 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP--HEGTRPVHAVFVS-EGKILTTGFSRMSERQ-VALWD  251 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS--SCSSSCCEEEECS-TTEEEEEEECTTCCEE-EEEEE
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC--CCCCcceEEEEcC-CCcEEEEeccCCCCce-EEEEc
Confidence            9999999999 7899999999999999999998755544233  333 489999998 88999998   67887 99999


Q ss_pred             cCCCCCceEEEe-cCCCCeeEEEeccCCCCeEE-EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307          241 IRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLC-SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW  318 (339)
Q Consensus       241 ~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (339)
                      ++....++.... .|...+.+++|+|++. +|+ +++.||.|++||+.....         ....+....|...|.+++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~g~~dg~i~i~d~~~~~~---------~~~~l~~~~~~~~v~~~~~  321 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTN-IVYLCGKGDSSIRYFEITSEAP---------FLHYLSMFSSKESQRGMGY  321 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTT-EEEEEETTCSCEEEEEECSSTT---------CEEEEEEECCSSCCSEEEE
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCC-EEEEEEcCCCeEEEEEecCCCc---------ceEeecccccCCcccceEE
Confidence            998665555444 5678899999999995 665 566899999999998760         0112233346689999999


Q ss_pred             cCCCCceEEEecCCeEEEEeC
Q 040307          319 SPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       319 ~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|++..++  +.++.+++|++
T Consensus       322 sp~~~~~~--s~~~~~~~~~l  340 (402)
T 2aq5_A          322 MPKRGLEV--NKCEIARFYKL  340 (402)
T ss_dssp             CCGGGSCG--GGTEEEEEEEE
T ss_pred             ecccccce--ecceeEEEEEc
Confidence            99987554  46679999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-37  Score=303.19  Aligned_cols=298  Identities=14%  Similarity=0.179  Sum_probs=244.4

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|.+.|++++|+|+   +++||+|+    .||.|+||++....  ...  .+ .+|...|.+++|+|++     ++||+
T Consensus       612 ~~h~~~v~~~~~s~~---~~~l~s~~----~d~~i~vw~~~~~~--~~~--~~-~~h~~~v~~~~~s~~~-----~~l~s  674 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQD---GQRIASCG----ADKTLQVFKAETGE--KLL--DI-KAHEDEVLCCAFSSDD-----SYIAT  674 (1249)
T ss_dssp             CCCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETTTCC--EEE--EE-CCCSSCEEEEEECTTS-----SEEEE
T ss_pred             ecccccEEEEEECCC---CCEEEEEe----CCCeEEEEECCCCC--EEE--Ee-ccCCCCEEEEEEecCC-----CEEEE
Confidence            357899999999999   99999999    79999998876543  222  23 5899999999999999     88888


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      ++ | .|++||+.+++  .+..+.+|.     ..|.+++|+|. +..++++|+.|+.|++||+++++....+.+|...|+
T Consensus       675 ~~~d~~v~vwd~~~~~--~~~~~~~~~-----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~  747 (1249)
T 3sfz_A          675 CSADKKVKIWDSATGK--LVHTYDEHS-----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN  747 (1249)
T ss_dssp             EETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred             EeCCCeEEEEECCCCc--eEEEEcCCC-----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence            87 4 99999999987  888888888     89999999973 345899999999999999999999999999999999


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE---------------------------------------------
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY---------------------------------------------  204 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------------------------------  204 (339)
                      +++|+ ++++|++++.||.|++||+++......+.                                             
T Consensus       748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~  827 (1249)
T 3sfz_A          748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH  827 (1249)
T ss_dssp             EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred             EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence            99999 78999999999999999998764322111                                             


Q ss_pred             -------eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          205 -------ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       205 -------~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                             ....|...+.+++|+| ++.++++++.++. |++||+.. ...+..+.+|...|.+++|+|++ .+|++++.|
T Consensus       828 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~-v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~d  903 (1249)
T 3sfz_A          828 TSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYC-VELWNIDS-RLKVADCRGHLSWVHGVMFSPDG-SSFLTASDD  903 (1249)
T ss_dssp             TCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSC-EEEEETTT-TEEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             CCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCe-EEEEEcCC-CceeeecCCCccceEEEEECCCC-CEEEEEeCC
Confidence                   0013567889999998 8999999999999 99999987 66788899999999999999999 699999999


Q ss_pred             CcEEEEEecCCCCC-----------------------------------------------------CC--------CCC
Q 040307          278 SRALIWEVVGPGYR-----------------------------------------------------SG--------NGG  296 (339)
Q Consensus       278 g~v~iwd~~~~~~~-----------------------------------------------------~~--------~~~  296 (339)
                      |.|++|++......                                                     |.        ..+
T Consensus       904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g  983 (1249)
T 3sfz_A          904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG  983 (1249)
T ss_dssp             SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence            99999997532100                                                     00        000


Q ss_pred             CC-----Ccccc-eeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          297 PS-----GDVEP-ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       297 ~~-----~~~~~-~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..     ..... .....|...|++++|+|+++.+++++.|+.|++|++
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            00     00011 123368889999999999999999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=263.16  Aligned_cols=290  Identities=14%  Similarity=0.192  Sum_probs=225.5

Q ss_pred             eccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE--------eecCCCCceEEEEcCCCCC
Q 040307           15 MAQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL--------IFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus        15 ~~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~   85 (339)
                      .|..+|.+++|+| +   +++||+|+    .||.|++|+++............        ...|...|.+++|+|++. 
T Consensus        41 ~h~~~v~~~~~s~~~---~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  112 (408)
T 4a11_B           41 IHGGGINTLDIEPVE---GRYMLSGG----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT-  112 (408)
T ss_dssp             CCSSCEEEEEECTTT---CCEEEEEE----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT-
T ss_pred             ccCCcEEEEEEecCC---CCEEEEEc----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC-
Confidence            4889999999999 8   99999999    79999998887654433321000        014899999999999442 


Q ss_pred             CCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           86 LNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF--DTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        86 ~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                         .+|++++ + .|++||+.+++  ....+. +.     ..+.++.|+|.  ++.++++++.|+.|++||+++++.+..
T Consensus       113 ---~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          113 ---GMFTSSSFDKTLKVWDTNTLQ--TADVFN-FE-----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             ---TCEEEEETTSEEEEEETTTTE--EEEEEE-CS-----SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             ---cEEEEEeCCCeEEEeeCCCCc--cceecc-CC-----CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence               7888877 5 99999999886  555554 33     68999999973  334999999999999999999999999


Q ss_pred             eeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEe-------------CCCCCCCeEEEEEecCCCCeE
Q 040307          162 LVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYE-------------NPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       162 ~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~~~~~v~~~~~~p~~~~~l  226 (339)
                      +..|...|.+++|+ ++. +|++++.|+.|++||++..........             ...|...|.+++|+| ++++|
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  260 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHL  260 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEE
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEE
Confidence            99999999999999 555 699999999999999988763333221             124678999999998 89999


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEecC-----CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLSKH-----EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      ++++.|+. |++||++... .......+     ...+........+ ..+++++.|+.|++||+....            
T Consensus       261 ~~~~~dg~-i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~d~~~~~------------  325 (408)
T 4a11_B          261 LTVGTDNR-MRLWNSSNGE-NTLVNYGKVCNNSKKGLKFTVSCGCS-SEFVFVPYGSTIAVYTVYSGE------------  325 (408)
T ss_dssp             EEEETTSC-EEEEETTTCC-BCCCCCCCCCCCCSSCCCCEECCSSS-SCEEEEEETTEEEEEETTTCC------------
T ss_pred             EEecCCCe-EEEEECCCCc-cceeccccccccccccceeEEecCCC-ceEEEEecCCEEEEEECcCCc------------
Confidence            99999999 9999998743 33222211     1122222222233 467777889999999999877            


Q ss_pred             cceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ......+|...|++++|+|+++.|++++.||.|++|++
T Consensus       326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence            23345579999999999999999999999999999984

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=262.27  Aligned_cols=290  Identities=15%  Similarity=0.184  Sum_probs=229.0

Q ss_pred             Cceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307            8 KPGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         8 ~~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      .+.+..+ .|...|.+++|+|+..++++|++|+    .||.|+||++.........  .+ ..|...|.+++|+|++   
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~----~dg~i~iw~~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~---   98 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGS----WANDVRCWEVQDSGQTIPK--AQ-QMHTGPVLDVCWSDDG---   98 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEE----TTSEEEEEEECTTSCEEEE--EE-EECSSCEEEEEECTTS---
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEEC----CCCcEEEEEcCCCCceeEE--Ee-ccccCCEEEEEECcCC---
Confidence            3344444 4789999999999921148999999    7999999998764444322  23 6799999999999999   


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDW--AGFDTRRVATCSVDTTCVIWDIDREILETQL  162 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  162 (339)
                        ++|++++ | .|++||+++++  ... +..|.     ..|++++|  +| ++++|++++.||.|++||+++++.+..+
T Consensus        99 --~~l~s~~~dg~v~iwd~~~~~--~~~-~~~~~-----~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~  167 (368)
T 3mmy_A           99 --SKVFTASCDKTAKMWDLSSNQ--AIQ-IAQHD-----APVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVL  167 (368)
T ss_dssp             --SEEEEEETTSEEEEEETTTTE--EEE-EEECS-----SCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred             --CEEEEEcCCCcEEEEEcCCCC--cee-ecccc-----CceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence              8888887 5 99999999886  333 45566     89999999  77 8899999999999999999999988888


Q ss_pred             eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe----EEEEeeCCCeEEE
Q 040307          163 VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF----MATVGMDSNKVVV  238 (339)
Q Consensus       163 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~----l~~~~~d~~~i~i  238 (339)
                      ..+. .+.++.+. ...+++++.++.+++||++........... ........+++.+ +...    +++++.++. |++
T Consensus       168 ~~~~-~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~-i~i  242 (368)
T 3mmy_A          168 QLPE-RCYCADVI-YPMAVVATAERGLIVYQLENQPSEFRRIES-PLKHQHRCVAIFK-DKQNKPTGFALGSIEGR-VAI  242 (368)
T ss_dssp             ECSS-CEEEEEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCC-SCSSCEEEEEEEE-CTTSCEEEEEEEETTSE-EEE
T ss_pred             ecCC-CceEEEec-CCeeEEEeCCCcEEEEEeccccchhhhccc-cccCCCceEEEcc-cCCCCCCeEEEecCCCc-EEE
Confidence            7554 66777776 457888889999999999987644333322 2345666777665 4443    999999998 999


Q ss_pred             EecCCCC--CceEEEecCCC------------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          239 LDIRFPT--NPVVVLSKHEG------------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       239 ~d~~~~~--~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      ||++...  ..+..+..|..            .|.+++|+|++ .+|++++.||.|++||+....            ...
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~------------~~~  309 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART------------KLK  309 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE------------EEE
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc------------EEE
Confidence            9998743  45667777776            79999999999 699999999999999999876            223


Q ss_pred             eeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      ....|...|.+++|+|++++|++++.|+..+.
T Consensus       310 ~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          310 TSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             ECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             EecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence            45578999999999999999999988775443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.4e-36  Score=265.82  Aligned_cols=274  Identities=15%  Similarity=0.220  Sum_probs=225.4

Q ss_pred             eccCCe-eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           15 MAQWPI-STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        15 ~~~~~v-~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .|..++ .++.+  +   +++|++|+    .||.|++|++...  +...  .+ .+|.+.|.+++|+|++      +|++
T Consensus       119 ~h~~~v~~~~~~--~---~~~l~sgs----~dg~i~vwd~~~~--~~~~--~~-~~h~~~V~~l~~~~~~------~l~s  178 (464)
T 3v7d_B          119 GHMTSVITCLQF--E---DNYVITGA----DDKMIRVYDSINK--KFLL--QL-SGHDGGVWALKYAHGG------ILVS  178 (464)
T ss_dssp             CCSSSCEEEEEE--E---TTEEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEECSTT------EEEE
T ss_pred             CCCCCcEEEEEE--C---CCEEEEEc----CCCcEEEEECCCC--cEEE--EE-eCCCcCEEEEEEcCCC------EEEE
Confidence            355664 55554  5   66999999    7999999876543  3332  33 5899999999999886      5555


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCee------------
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAG-FDTRRVATCSVDTTCVIWDIDREIL------------  158 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~------------  158 (339)
                      |+ | +|++||+++++  ....+.+|.     ..|.+++|++ .++.+|++++.|+.|++||++++..            
T Consensus       179 ~s~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGC--CTHVFEGHN-----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred             EeCCCCEEEEECCCCc--EEEEECCCC-----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence            55 6 99999999887  788888888     8999999984 2678999999999999999987652            


Q ss_pred             -----------eeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          159 -----------ETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       159 -----------~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                                 ...+.+|...+.++... ++++++++.|+.|++||+++.+....+ .  .|...+.+++|+| ++++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~-~--~~~~~v~~~~~~~-~~~~l~  326 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYIL-S--GHTDRIYSTIYDH-ERKRCI  326 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEE-C--CCSSCEEEEEEET-TTTEEE
T ss_pred             EeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEe-c--CCCCCEEEEEEcC-CCCEEE
Confidence                       44567788888888554 889999999999999999987744433 2  3678999999998 899999


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY  307 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  307 (339)
                      +++.|+. |++||+++ ++++..+.+|...|.+++|++   .+|++++.||.|++||+....             .....
T Consensus       327 sg~~dg~-i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~-------------~~~~~  388 (464)
T 3v7d_B          327 SASMDTT-IRIWDLEN-GELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS-------------RKFSY  388 (464)
T ss_dssp             EEETTSC-EEEEETTT-TEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC-------------EEEEE
T ss_pred             EEeCCCc-EEEEECCC-CcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCc-------------eeeee
Confidence            9999999 99999987 678889999999999999983   589999999999999999876             44455


Q ss_pred             cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .+...+..++|+|++..+++++ |+.|++|++
T Consensus       389 ~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~  419 (464)
T 3v7d_B          389 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNL  419 (464)
T ss_dssp             ECTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred             cCCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence            6777888999999998666666 999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-37  Score=261.90  Aligned_cols=251  Identities=19%  Similarity=0.247  Sum_probs=211.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~  143 (339)
                      .+|...|.+++|+|++     ++||+++ + .|+||++..........+.+|.     .+|++++|+| +  +++|++++
T Consensus         8 ~~h~~~v~~~~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~~~l~s~~   76 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYG-----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAH-PKFGTILASCS   76 (379)
T ss_dssp             EECCCCEEEEEECSSS-----SEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEE
T ss_pred             cCCcccEEEEEEcCCC-----CEEEEEECCCcEEEEecCCCcceeeeEecCCC-----CcEEEEEeCC-CCCCCEEEEec
Confidence            6899999999999999     8888887 5 9999999866555778888888     8999999986 5  89999999


Q ss_pred             CCCeEEEEECCCCe--eeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307          144 VDTTCVIWDIDREI--LETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       144 ~d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  218 (339)
                      .||.|++||+++++  .+..+..|...|.+++|+ +  +.+|++++.|+.|++||++.......... ..|...+.+++|
T Consensus        77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~~~  155 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASW  155 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-ECCTTCEEEEEE
T ss_pred             cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-cCCCCceEEEEE
Confidence            99999999999887  677778899999999999 5  78999999999999999998753332221 236789999999


Q ss_pred             ecC------------CCCeEEEEeeCCCeEEEEecCCCCC---ceEEEecCCCCeeEEEeccC---CCCeEEEEeCCCcE
Q 040307          219 NKA------------DPRFMATVGMDSNKVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPL---YGRRLCSVADDSRA  280 (339)
Q Consensus       219 ~p~------------~~~~l~~~~~d~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~v  280 (339)
                      +|.            ++.+|++++.|+. |++||++....   +...+.+|...|.+++|+|+   + .+|++++.||.|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i  233 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTC  233 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEE
Confidence            985            5899999999999 99999987442   34567789999999999999   6 699999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          281 LIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++||+..... +.      .........|...|++++|+|++++|++++.|+.|++|++
T Consensus       234 ~iwd~~~~~~-~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          234 IIWTQDNEQG-PW------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             EEEEESSTTS-CC------EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             EEEeCCCCCc-cc------eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            9999998650 00      0001122347889999999999999999999999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.9e-37  Score=255.00  Aligned_cols=240  Identities=18%  Similarity=0.268  Sum_probs=202.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|...|++++|+|++     ++|++++ | .|++|++.+++  ....+.+|.     ..|.+++|+| ++++|++++.|
T Consensus        20 ~gh~~~v~~~~~s~~~-----~~l~s~~~dg~i~iw~~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~~~d   86 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNG-----EWLASSSADKLIKIWGAYDGK--FEKTISGHK-----LGISDVAWSS-DSNLLVSASDD   86 (312)
T ss_dssp             CCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTCC--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETT
T ss_pred             cccCCcEEEEEECCCC-----CEEEEeeCCCeEEEEeCCCcc--cchhhccCC-----CceEEEEEcC-CCCEEEEECCC
Confidence            5899999999999999     8888887 5 99999998887  677788887     8999999998 99999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +.|++||+++++.+..+.+|...|.+++|+ ++++|++++.|+.|++||+++++....+ .  .|..++.+++|+| +++
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~~~-~~~  162 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-P--AHSDPVSAVHFNR-DGS  162 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-C--CCSSCEEEEEECT-TSS
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-c--CCCCcEEEEEEcC-CCC
Confidence            999999999999999999999999999999 7899999999999999999988744332 2  3678999999998 899


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP  303 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  303 (339)
                      +|++++.|+. |++||++. .+.+..+ ..+...+..++|+|++ .+|++++.|+.|++||+....            ..
T Consensus       163 ~l~~~~~d~~-i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~------------~~  227 (312)
T 4ery_A          163 LIVSSSYDGL-CRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK------------CL  227 (312)
T ss_dssp             EEEEEETTSC-EEEEETTT-CCEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE------------EE
T ss_pred             EEEEEeCCCc-EEEEECCC-CceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc------------EE
Confidence            9999999999 99999987 4455554 4456789999999999 699999999999999998876            12


Q ss_pred             eeeeccccee--EEEEec-CCCCceEEEecCCeEEEEeC
Q 040307          304 ELCYQSMAEI--NVVRWS-PLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       304 ~~~~~~~~~i--~~~~~~-p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .....|...+  ....++ +++..+++++.|+.|++|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~  266 (312)
T 4ery_A          228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL  266 (312)
T ss_dssp             EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred             EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence            2333454332  223344 56777888899999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.6e-36  Score=254.66  Aligned_cols=265  Identities=17%  Similarity=0.225  Sum_probs=213.6

Q ss_pred             CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCC
Q 040307           45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKT  119 (339)
Q Consensus        45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~  119 (339)
                      .|...+|-............++ .+|.+.|++|+|+|++.    ++||+|+ | +|+|||+...+   ..+...+.+|. 
T Consensus        13 ~g~~~~~~~~~~~~~~~l~~tL-~GH~~~V~~v~~sp~~~----~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-   86 (340)
T 4aow_A           13 LGTENLYFQSMMTEQMTLRGTL-KGHNGWVTQIATTPQFP----DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-   86 (340)
T ss_dssp             -------------CEEEEEEEE-CCCSSCEEEEEECTTCT----TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-
T ss_pred             CCCccEEEEEccCCceEEEEEE-CCccCCEEEEEEeCCCC----CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-
Confidence            3444443344434444433345 68999999999999853    7999987 5 99999998764   23566778887 


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307          120 SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE  198 (339)
Q Consensus       120 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~  198 (339)
                          ..|.+++|+| ++++|++++.|+.|++|+............+...+..+.++ .+++|++++.|+.+++||+....
T Consensus        87 ----~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~  161 (340)
T 4aow_A           87 ----HFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC  161 (340)
T ss_dssp             ----SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             ----CCEEEEEECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence                8999999998 99999999999999999999998888888888889999998 78999999999999999998766


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCC-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKAD-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      ......  ..|...+..++|++.. ..++++++.|+. |++||++. .+++..+.+|...|++++|+|++ .+|++++.|
T Consensus       162 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D  236 (340)
T 4aow_A          162 KYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKD  236 (340)
T ss_dssp             EEEECS--SSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTT-TEEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             eEEEEe--ccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCC-CceeeEecCCCCcEEEEEECCCC-CEEEEEeCC
Confidence            443333  3477899999998743 346788899998 99999987 66788899999999999999999 699999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          278 SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |.|++||+....             +.....+...|..++|+|++ .+++++.|+.|++|++
T Consensus       237 g~i~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          237 GQAMLWDLNEGK-------------HLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDL  284 (340)
T ss_dssp             CEEEEEETTTTE-------------EEEEEECSSCEEEEEECSSS-SEEEEEETTEEEEEET
T ss_pred             CeEEEEEeccCc-------------eeeeecCCceEEeeecCCCC-ceeeccCCCEEEEEEC
Confidence            999999999877             55566677889999999987 4888889999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-36  Score=280.25  Aligned_cols=245  Identities=17%  Similarity=0.266  Sum_probs=210.6

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .+|.+.|++++|+|++.    ++|++|+ | +|++|++....   ......+.+|.     ..|.+++|+| ++++|++|
T Consensus       379 ~~H~~~V~~v~~~~~~~----~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~s~-~g~~l~sg  448 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNA----DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVLSS-DGQFALSG  448 (694)
T ss_dssp             ECCSSCEEEEECCTTCC----SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEECT-TSSEEEEE
T ss_pred             ccCCceeEEEEecCCCC----CEEEEEeCCCcEEEEEccCCCcccccccceecCCC-----CcEEEEEECC-CCCEEEEE
Confidence            68999999999999864    7899887 5 99999997643   12456788888     8999999998 99999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                      +.|+.|++||+.+++....+.+|...|.+++|+ ++++|++++.|++|++||+..............|...|.+++|+|.
T Consensus       449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            999999999999999999999999999999999 7899999999999999998765433333333457788999999984


Q ss_pred             C-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          222 D-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       222 ~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      . ...|++++.|+. |++||++. .+....+.+|...|++++|+|++ .+|++++.||.|++||+....           
T Consensus       529 ~~~~~l~s~s~d~~-v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~-----------  594 (694)
T 3dm0_A          529 TLQPTIVSASWDKT-VKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK-----------  594 (694)
T ss_dssp             SSSCEEEEEETTSC-EEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE-----------
T ss_pred             CCcceEEEEeCCCe-EEEEECCC-CcEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-----------
Confidence            3 258999999999 99999987 66788899999999999999999 699999999999999998877           


Q ss_pred             ccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                        .+....+...|.+++|+|++. +++++.++.|++|++
T Consensus       595 --~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~i~iwd~  630 (694)
T 3dm0_A          595 --KLYSLEANSVIHALCFSPNRY-WLCAATEHGIKIWDL  630 (694)
T ss_dssp             --EEECCBCSSCEEEEEECSSSS-EEEEEETTEEEEEET
T ss_pred             --eEEEecCCCcEEEEEEcCCCc-EEEEEcCCCEEEEEC
Confidence              444455667899999999986 666677888999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=259.83  Aligned_cols=251  Identities=16%  Similarity=0.208  Sum_probs=207.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIVA   92 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~la   92 (339)
                      .|..+|.+++|+|+   +++||+|+    .||.|+||++.........  .+ ..|...|.+++|+++  +     .+|+
T Consensus         9 ~h~~~v~~~~~s~~---~~~l~~~~----~dg~i~iw~~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~~~-----~~l~   73 (379)
T 3jrp_A            9 AHNELIHDAVLDYY---GKRLATCS----SDKTIKIFEVEGETHKLID--TL-TGHEGPVWRVDWAHPKFG-----TILA   73 (379)
T ss_dssp             ECCCCEEEEEECSS---SSEEEEEE----TTSCEEEEEEETTEEEEEE--EE-CCCSSCEEEEEECCGGGC-----SEEE
T ss_pred             CCcccEEEEEEcCC---CCEEEEEE----CCCcEEEEecCCCcceeee--Ee-cCCCCcEEEEEeCCCCCC-----CEEE
Confidence            47899999999999   99999999    7999999988754433332  33 579999999999987  6     7888


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe--eeeeeeccC
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI--LETQLVAHD  166 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~  166 (339)
                      +++ | .|++||+.+++......+..|.     ..|.+++|+| +  +.+|++++.|+.|++||++++.  ....+..|.
T Consensus        74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRWSQIAVHAVHS-----ASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             EeccCCEEEEEEcCCCceeEeeeecCCC-----cceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence            887 5 9999999998755677777777     8999999998 7  8999999999999999998874  344567899


Q ss_pred             CceeEEEecC--------------CcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCC--CCeEEEE
Q 040307          167 REVYDISWGG--------------FNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKAD--PRFMATV  229 (339)
Q Consensus       167 ~~v~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~--~~~l~~~  229 (339)
                      ..|.+++|++              +.+|++++.|+.|++||++...... .......|...|.+++|+|+.  +.+|+++
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            9999999995              7899999999999999998776432 222333478899999999932  8999999


Q ss_pred             eeCCCeEEEEecCCCCCceE--E--EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          230 GMDSNKVVVLDIRFPTNPVV--V--LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       230 ~~d~~~i~i~d~~~~~~~~~--~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      +.|+. |++||++....+..  .  ...|...|.+++|+|++ .+|++++.||.|++|++...
T Consensus       228 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          228 SQDRT-CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             ETTSC-EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEET
T ss_pred             eCCCE-EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCCC
Confidence            99999 99999987432221  1  22378899999999999 59999999999999999843

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.1e-36  Score=252.77  Aligned_cols=253  Identities=17%  Similarity=0.245  Sum_probs=210.9

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--CCCCCCCCeE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--SEETLNPDIV   91 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~~~~l   91 (339)
                      ..|..+|++++|+|+   +++||+|+    .||.|+||++............+ ..|...|.+++|+|  ++     .+|
T Consensus         8 ~gH~~~v~~~~~~~~---~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~-----~~l   74 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFY---GRHVATCS----SDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYG-----RII   74 (351)
T ss_dssp             CCCSSCEEEEEECSS---SSEEEEEE----TTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGC-----SEE
T ss_pred             cccccceeEEEEcCC---CCEEEEee----CCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCC-----CEE
Confidence            357899999999999   99999999    79999999988665544432233 58999999999999  47     788


Q ss_pred             EEeC-C-cEEEEeecCCcc-------eeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCeeee
Q 040307           92 ATSG-D-SLRLWEIHDDRT-------ELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        92 a~~~-~-~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                      ++++ | .|++||++.++.       .....+..|.     ..|.+++|+| +  +++|++++.||.|++||+++++.+.
T Consensus        75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----GSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             EEEcCCCeEEEEecCCCcccccccCcceeeeecccC-----CceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhc
Confidence            8887 5 999999988632       3577777777     8999999998 7  8999999999999999998876544


Q ss_pred             eee-------------ccCCceeEEEec-C---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          161 QLV-------------AHDREVYDISWG-G---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       161 ~~~-------------~~~~~v~~~~~~-~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      .+.             .|...+.+++|+ +   +..+++++.++.+.+|+...... ........|...|.+++|+| ++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~~p-~~  226 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-HVAAKLPGHKSLIRSISWAP-SI  226 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-EEEEECCCCCSCEEEEEECC-CS
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-eeeeecCCCCcceeEEEECC-CC
Confidence            432             577889999999 4   88999999999998887776653 33344445788999999999 65


Q ss_pred             ----CeEEEEeeCCCeEEEEecCCCC---------------------------------------------CceEEEecC
Q 040307          224 ----RFMATVGMDSNKVVVLDIRFPT---------------------------------------------NPVVVLSKH  254 (339)
Q Consensus       224 ----~~l~~~~~d~~~i~i~d~~~~~---------------------------------------------~~~~~~~~~  254 (339)
                          ++|++++.|+. |++||++...                                             +++..+.+|
T Consensus       227 ~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          227 GRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             SCSSEEEEEEETTSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence                79999999999 9999998631                                             456667889


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ...|++++|+|++ .+|++++.||.|++|++...+
T Consensus       306 ~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          306 NGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             SSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred             cccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence            9999999999999 699999999999999999876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.2e-36  Score=273.06  Aligned_cols=279  Identities=16%  Similarity=0.215  Sum_probs=216.2

Q ss_pred             ccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC---CceEEEEcCC-CCCCCCCe
Q 040307           16 AQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY---TPTNIAFFPS-EETLNPDI   90 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~~~~~~   90 (339)
                      |...|.+++|+|+   +. +|++++    .|+.|++|+....  ....  .+ ..|..   .|.+++|+|+ +     ++
T Consensus       159 ~~~~v~~~~~~~~---~~~~l~~~~----~d~~v~vwd~~~~--~~~~--~~-~~~~~~~~~v~~~~~~~~~~-----~~  221 (615)
T 1pgu_A          159 HSQRINACHLKQS---RPMRSMTVG----DDGSVVFYQGPPF--KFSA--SD-RTHHKQGSFVRDVEFSPDSG-----EF  221 (615)
T ss_dssp             CSSCEEEEEECSS---SSCEEEEEE----TTTEEEEEETTTB--EEEE--EE-CSSSCTTCCEEEEEECSTTC-----CE
T ss_pred             CCccEEEEEECCC---CCcEEEEEe----CCCcEEEEeCCCc--ceee--ee-cccCCCCceEEEEEECCCCC-----CE
Confidence            6789999999999   87 799999    7999999875532  2222  23 56888   9999999999 8     78


Q ss_pred             EEEeC-C-cEEEEeecCCcceeEEEe-e---cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           91 VATSG-D-SLRLWEIHDDRTELKSLL-N---SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        91 la~~~-~-~i~iw~~~~~~~~~~~~~-~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                      |++++ + .|++||+.+++  ....+ .   .|.     ..|.+++|+  ++++|++++.|+.|++||+++++.+..+..
T Consensus       222 l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~-----~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          222 VITVGSDRKISCFDGKSGE--FLKYIEDDQEPVQ-----GGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             EEEEETTCCEEEEETTTCC--EEEECCBTTBCCC-----SCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCCCC--EeEEecccccccC-----CceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            88876 4 99999999887  66676 4   666     899999998  789999999999999999998877666654


Q ss_pred             c----CCceeEEEecC----------------------------------------------------------------
Q 040307          165 H----DREVYDISWGG----------------------------------------------------------------  176 (339)
Q Consensus       165 ~----~~~v~~~~~~~----------------------------------------------------------------  176 (339)
                      +    ...+.++.|.+                                                                
T Consensus       293 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~  372 (615)
T 1pgu_A          293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS  372 (615)
T ss_dssp             CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred             CCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence            3    12222332222                                                                


Q ss_pred             ----------CcEEEEEeCCCcEEEEEC----------------------------------------------------
Q 040307          177 ----------FNVFASVSGDCSVRVFDL----------------------------------------------------  194 (339)
Q Consensus       177 ----------~~~l~~~~~d~~i~i~d~----------------------------------------------------  194 (339)
                                +..|++++.|+.|++||+                                                    
T Consensus       373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (615)
T 1pgu_A          373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV  452 (615)
T ss_dssp             SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence                      333333333333333332                                                    


Q ss_pred             ----------------------CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          195 ----------------------RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       195 ----------------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                                            .+.+...  .....|...+.+++|+| ++++|++++.|+. |++||+.. .+++..+.
T Consensus       453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~-i~iw~~~~-~~~~~~~~  527 (615)
T 1pgu_A          453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP-SETYIAAGDVMGK-ILLYDLQS-REVKTSRW  527 (615)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-TEEEECCS
T ss_pred             EEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECC-CCCEEEEcCCCCe-EEEeeCCC-CcceeEee
Confidence                                  2211100  22234678899999998 8999999999999 99999987 56677777


Q ss_pred             c-CCCCeeEEEecc----------CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecC
Q 040307          253 K-HEGSVNGISWAP----------LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSP  320 (339)
Q Consensus       253 ~-~~~~v~~~~~~p----------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p  320 (339)
                      + |...|++++|+|          ++ .+|++++.||.|++||+....            .+. ....|...|++++|+|
T Consensus       528 ~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~h~~~v~~l~~s~  594 (615)
T 1pgu_A          528 AFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRPM------------KIIKALNAHKDGVNNLLWET  594 (615)
T ss_dssp             CCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCTT------------CCEEETTSSTTCEEEEEEEE
T ss_pred             cCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCCc------------eechhhhcCccceEEEEEcC
Confidence            7 999999999999          88 699999999999999999873            133 4557899999999999


Q ss_pred             CCCceEEEecCCeEEEEeC
Q 040307          321 LELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       321 ~~~~l~~~~~d~~v~~w~v  339 (339)
                      +++ |++++.|+.|++|++
T Consensus       595 ~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          595 PST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             TTE-EEEEETTSCEEEEEE
T ss_pred             CCC-eEEecCCceEEEEee
Confidence            999 999999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.5e-36  Score=260.48  Aligned_cols=276  Identities=18%  Similarity=0.312  Sum_probs=225.3

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +..+|.+++|  +   +++|++|+    .||.|++|+....  +...  .+ .+|...|.+++|  ++     .+|++|+
T Consensus       132 ~~~~v~~~~~--d---~~~l~~g~----~dg~i~iwd~~~~--~~~~--~~-~~h~~~v~~l~~--~~-----~~l~sg~  190 (435)
T 1p22_A          132 TSKGVYCLQY--D---DQKIVSGL----RDNTIKIWDKNTL--ECKR--IL-TGHTGSVLCLQY--DE-----RVIITGS  190 (435)
T ss_dssp             SCCCEEEEEC--C---SSEEEEEE----SSSCEEEEESSSC--CEEE--EE-CCCSSCEEEEEC--CS-----SEEEEEE
T ss_pred             CCCcEEEEEE--C---CCEEEEEe----CCCeEEEEeCCCC--eEEE--EE-cCCCCcEEEEEE--CC-----CEEEEEc
Confidence            4567888877  6   77999999    7999999886543  3332  23 589999999999  55     7888877


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee---eeeeccCCcee
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE---TQLVAHDREVY  170 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~v~  170 (339)
                       | .|++||+.+++  ....+.+|.     ..|.+++|++   +.+++|+.||.|++||+++++..   ..+.+|...|.
T Consensus       191 ~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  260 (435)
T 1p22_A          191 SDSTVRVWDVNTGE--MLNTLIHHC-----EAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  260 (435)
T ss_dssp             TTSCEEEEESSSCC--EEEEECCCC-----SCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             CCCeEEEEECCCCc--EEEEEcCCC-----CcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence             5 99999999987  778888887     8999999974   59999999999999999887654   56778999999


Q ss_pred             EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          171 DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      +++| +++++++++.|+.|++||+++.+....+ ..  |...+.+++|+   +.++++|+.|+. |++||++. ++++..
T Consensus       261 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~--~~~~v~~~~~~---~~~l~~g~~dg~-i~iwd~~~-~~~~~~  331 (435)
T 1p22_A          261 VVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTL-NG--HKRGIACLQYR---DRLVVSGSSDNT-IRLWDIEC-GACLRV  331 (435)
T ss_dssp             EEEE-ETTEEEEEETTSEEEEEETTTCCEEEEE-EC--CSSCEEEEEEE---TTEEEEEETTSC-EEEEETTT-CCEEEE
T ss_pred             EEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEE-cC--CCCcEEEEEeC---CCEEEEEeCCCe-EEEEECCC-CCEEEE
Confidence            9999 5889999999999999999998754443 33  67889999984   579999999999 99999997 678889


Q ss_pred             EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307          251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      +.+|...|.+++|  ++ .+|++|+.||.|++||+..... +.  .+...........|...|.+++|  ++..+++++.
T Consensus       332 ~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~-~~--~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  403 (435)
T 1p22_A          332 LEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALD-PR--APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH  403 (435)
T ss_dssp             ECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTS-TT--SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS
T ss_pred             EeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCC-cc--ccccchheeeccCCCCCeEEEEe--CCCEEEEEeC
Confidence            9999999999999  55 5999999999999999987651 10  00001112345578999999999  6667889999


Q ss_pred             CCeEEEEeC
Q 040307          331 VNKLQLLKV  339 (339)
Q Consensus       331 d~~v~~w~v  339 (339)
                      ||.|++|++
T Consensus       404 Dg~i~iwd~  412 (435)
T 1p22_A          404 DDTILIWDF  412 (435)
T ss_dssp             SSEEEEEC-
T ss_pred             CCEEEEEEC
Confidence            999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.8e-36  Score=253.99  Aligned_cols=261  Identities=19%  Similarity=0.239  Sum_probs=208.0

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEE
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVAT  141 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~  141 (339)
                      ..+|.+.|++++|+|++     ++|++++ | .|++|++.++.  ......+.+|.     .+|++++|+|. ++++|++
T Consensus         7 ~~gH~~~v~~~~~~~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYG-----RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-----SSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             ECCCSSCEEEEEECSSS-----SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-----SCEEEEEECCGGGCSEEEE
T ss_pred             CcccccceeEEEEcCCC-----CEEEEeeCCCeEEEEECCCCCCcceecceeccCC-----CcEEEEEEcCCCCCCEEEE
Confidence            36899999999999999     8888887 4 99999998753  24666778887     89999999974 4899999


Q ss_pred             EeCCCeEEEEECCCC---------eeeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEE-----
Q 040307          142 CSVDTTCVIWDIDRE---------ILETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIY-----  204 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----  204 (339)
                      ++.||.|++||++++         +.+..+..|...|.+++|+ +  +++|++++.|+.|++||+++.+....+.     
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  156 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM  156 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence            999999999999886         5577788899999999999 5  8899999999999999999876433221     


Q ss_pred             -----eCCCCCCCeEEEEEecC--CCCeEEEEeeCCCeEEEEecCCCCCc--eEEEecCCCCeeEEEeccCCC---CeEE
Q 040307          205 -----ENPVQDCPLLRLEWNKA--DPRFMATVGMDSNKVVVLDIRFPTNP--VVVLSKHEGSVNGISWAPLYG---RRLC  272 (339)
Q Consensus       205 -----~~~~~~~~v~~~~~~p~--~~~~l~~~~~d~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~p~~~---~~l~  272 (339)
                           ....+...+.+++|+|.  ++.++++++.++. +.+|+... ...  +..+.+|...|.+++|+|+++   .+|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~  234 (351)
T 3f3f_A          157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA  234 (351)
T ss_dssp             ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred             cccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence                 11236678999999984  4889999999997 87776655 433  667788999999999999973   4999


Q ss_pred             EEeCCCcEEEEEecCCCCCCCCCC---------------------------------CCCcccce-eeecccceeEEEEe
Q 040307          273 SVADDSRALIWEVVGPGYRSGNGG---------------------------------PSGDVEPE-LCYQSMAEINVVRW  318 (339)
Q Consensus       273 ~~~~dg~v~iwd~~~~~~~~~~~~---------------------------------~~~~~~~~-~~~~~~~~i~~~~~  318 (339)
                      +++.||.|++||+...........                                 ......+. ...+|...|++++|
T Consensus       235 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  314 (351)
T 3f3f_A          235 TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW  314 (351)
T ss_dssp             EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred             EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence            999999999999987531000000                                 00000112 33468899999999


Q ss_pred             cCCCCceEEEecCCeEEEEeC
Q 040307          319 SPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       319 ~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|+++.|++++.|+.|++|++
T Consensus       315 s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          315 NLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             CSSSCCEEEEETTSCEEEEEE
T ss_pred             cCCCCEEEEecCCCcEEEEec
Confidence            999999999999999999984

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.9e-36  Score=270.63  Aligned_cols=281  Identities=14%  Similarity=0.193  Sum_probs=233.0

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcC--CCCCCCCCeE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFP--SEETLNPDIV   91 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~--~~~~~~~~~l   91 (339)
                      .+...|.+++|+|+   +++||+++     ++.|+||+++...........+ .+|... |.+++|+|  ++     ++|
T Consensus        16 ~~~~~v~~~~~spd---g~~l~~~~-----~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~-----~~l   81 (615)
T 1pgu_A           16 TQRNFTTHLSYDPT---TNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGS-----QYL   81 (615)
T ss_dssp             CCTTCCCCCEEETT---TTEEEEEE-----TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTC-----CEE
T ss_pred             CccCceeEEEECCC---CCEEEEec-----CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCCC-----CEE
Confidence            35689999999999   99999999     7899998887442111121133 689999 99999999  99     899


Q ss_pred             EEeC-C-cEEEEeecCC------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeee
Q 040307           92 ATSG-D-SLRLWEIHDD------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILE  159 (339)
Q Consensus        92 a~~~-~-~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~  159 (339)
                      ++++ + .|++|++.++      +......+..|.     .+|.+++|+| ++++|++++.+    +.|++||  .++.+
T Consensus        82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~  153 (615)
T 1pgu_A           82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-----GPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSL  153 (615)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-----SCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred             EEecCCCEEEEEeCCCCcccccccccccchhhccc-----ccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence            9887 4 9999999765      334677777777     8999999998 99999999988    6888888  56678


Q ss_pred             eeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC---CeEEEEEecCC-CCeEEEEeeCC
Q 040307          160 TQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDC---PLLRLEWNKAD-PRFMATVGMDS  233 (339)
Q Consensus       160 ~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~-~~~l~~~~~d~  233 (339)
                      ..+.+|...|.+++|+ ++. .+++++.|+.|++||+++.+....+ .  .|..   .|.+++|+| + +++|++++.++
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~--~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg  229 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-R--THHKQGSFVRDVEFSP-DSGEFVITVGSDR  229 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-C--SSSCTTCCEEEEEECS-TTCCEEEEEETTC
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-c--ccCCCCceEEEEEECC-CCCCEEEEEeCCC
Confidence            8888999999999999 554 8999999999999999887644433 2  2556   899999999 6 99999999999


Q ss_pred             CeEEEEecCCCCCceEEE-e---cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-c
Q 040307          234 NKVVVLDIRFPTNPVVVL-S---KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-Q  308 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~-~---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~  308 (339)
                      . |++||++. .+++..+ .   .|...|.+++|+ ++ .+|++++.|+.|++||+...+             ..... .
T Consensus       230 ~-i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~-------------~~~~~~~  292 (615)
T 1pgu_A          230 K-ISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSK-------------CVQKWTL  292 (615)
T ss_dssp             C-EEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTE-------------EEEEEEC
T ss_pred             e-EEEEECCC-CCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCc-------------EEEEEcC
Confidence            9 99999987 6677777 5   899999999999 87 699999999999999999876             33222 2


Q ss_pred             ----ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          309 ----SMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       309 ----~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                          +...+.++.|. ++..+++++.|+.|++|++
T Consensus       293 ~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          293 DKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             CTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             CCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence                24678899996 7778899999999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-37  Score=265.90  Aligned_cols=247  Identities=17%  Similarity=0.205  Sum_probs=192.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..+.++|++++|+|++     ++||+++ + .|++|++.++.......+.+|.     ..|++++|+| ++++|++++.|
T Consensus         8 ~~~~~~v~~~~~s~~g-----~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~s~-~~~~l~s~s~d   76 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQR-----TEFVTTTATNQVELYEQDGNGWKHARTFSDHD-----KIVTCVDWAP-KSNRIVTCSQD   76 (377)
T ss_dssp             EECSSCCSCCEECSSS-----SEEECCCSSSCBCEEEEETTEEEECCCBCCCS-----SCEEEEEECT-TTCCEEEEETT
T ss_pred             ecCCCcEEEEEECCCC-----CEEEEecCCCEEEEEEccCCceEEEEEEecCC-----ceEEEEEEeC-CCCEEEEEeCC
Confidence            3467799999999999     8999986 5 9999999987444777888887     8999999998 89999999999


Q ss_pred             CeEEEEECCCCe---eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC-CCCCeEEEEEec
Q 040307          146 TTCVIWDIDREI---LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV-QDCPLLRLEWNK  220 (339)
Q Consensus       146 ~~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~p  220 (339)
                      +.|++||+++++   ....+..|...|.+++|+ ++++|++++.|+.|++||++..+.......... |...|.+++|+|
T Consensus        77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            999999998876   566677899999999999 789999999999999999998763111111122 678999999998


Q ss_pred             CCCCeEEEEeeCCCeEEEEecCCC-----------------CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          221 ADPRFMATVGMDSNKVVVLDIRFP-----------------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       221 ~~~~~l~~~~~d~~~i~i~d~~~~-----------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                       ++++|++++.|+. |++||++..                 .+++..+ .|...|.+++|+|++ .+|++++.||.|++|
T Consensus       157 -~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw  232 (377)
T 3dwl_C          157 -NNVLLAAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIA  232 (377)
T ss_dssp             -TSSEEEEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-C
T ss_pred             -CCCEEEEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEE
Confidence             8999999999999 999998631                 2234445 889999999999999 699999999999999


Q ss_pred             EecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          284 EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      |+..... +.       ........|...|.+++|+|+++.+++++.++.+ +|.
T Consensus       233 d~~~~~~-~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          233 YPSAPEQ-PP-------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             EECSTTS-CE-------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred             ECCCCCC-cc-------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence            9999870 00       0023455788999999999999866566555555 664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=284.16  Aligned_cols=245  Identities=11%  Similarity=0.181  Sum_probs=192.7

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +....+.|...|++++|+|+   +++||+|+    .||.|+||+..  ..+...    ...|...|.+++|+| +     
T Consensus         9 ~~~~~~gh~~~V~~lafspd---g~~lAsgs----~Dg~I~lw~~~--~~~~~~----~~~~~~~V~~l~fsp-g-----   69 (902)
T 2oaj_A            9 AETNKYGMSSKPIAAAFDFT---QNLLAIAT----VTGEVHIYGQQ--QVEVVI----KLEDRSAIKEMRFVK-G-----   69 (902)
T ss_dssp             EEEEEEECSSCEEEEEEETT---TTEEEEEE----TTSEEEEECST--TCEEEE----ECSSCCCEEEEEEET-T-----
T ss_pred             ccccccCCCCCcEEEEECCC---CCEEEEEe----CCCEEEEEeCC--CcEEEE----EcCCCCCEEEEEEcC-C-----
Confidence            34556778999999999999   99999999    79999997643  333322    356888999999999 7     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee-------
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE-------  159 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-------  159 (339)
                      ++|++++ | +|++||+.+++  .+..+. |.     ..|++++|+| ++++|++|+.||.|++||+++++..       
T Consensus        70 ~~L~S~s~D~~v~lWd~~~~~--~~~~~~-~~-----~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~  140 (902)
T 2oaj_A           70 IYLVVINAKDTVYVLSLYSQK--VLTTVF-VP-----GKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL  140 (902)
T ss_dssp             TEEEEEETTCEEEEEETTTCS--EEEEEE-CS-----SCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred             CEEEEEECcCeEEEEECCCCc--EEEEEc-CC-----CCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence            7777776 5 99999999887  666665 44     6899999998 9999999999999999999988753       


Q ss_pred             ----eeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeC---------------CCCCCCeEEEEE
Q 040307          160 ----TQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYEN---------------PVQDCPLLRLEW  218 (339)
Q Consensus       160 ----~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~~~~  218 (339)
                          ..+.+|.+.|++++|+|  +..+++++.|+.| +||+++.+....+...               ..|...|.+++|
T Consensus       141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY  219 (902)
T ss_dssp             HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred             cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence                23467889999999994  4789999999999 9999988754433211               123467999999


Q ss_pred             ecCCCCeEEEEeeCCCeEEEEecCCCCCceEE--E---ec-------------CCCCeeEEEec----cCCCCeEEEEeC
Q 040307          219 NKADPRFMATVGMDSNKVVVLDIRFPTNPVVV--L---SK-------------HEGSVNGISWA----PLYGRRLCSVAD  276 (339)
Q Consensus       219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~--~---~~-------------~~~~v~~~~~~----p~~~~~l~~~~~  276 (339)
                      +| ++.+|++++.|+. |++||++. ++++..  +   ..             |...|++++|+    |++..+|++|+.
T Consensus       220 sp-dg~~lasgs~Dg~-i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          220 HP-NSLHIITIHEDNS-LVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             CT-TSSEEEEEETTCC-EEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             cC-CCCEEEEEECCCe-EEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            99 8999999999999 99999987 454432  2   11             34579999995    443357777766


Q ss_pred             C-----CcEEEEEe
Q 040307          277 D-----SRALIWEV  285 (339)
Q Consensus       277 d-----g~v~iwd~  285 (339)
                      |     ..+.+|++
T Consensus       297 ~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          297 ISRGDNQSLTMIDL  310 (902)
T ss_dssp             STTSSCCCEEEEEE
T ss_pred             CCCCCCceEEEEec
Confidence            5     37888874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-35  Score=253.13  Aligned_cols=245  Identities=15%  Similarity=0.186  Sum_probs=208.4

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..|..+|.+++|+|++     ++|++++ + .|++|++.+++......+.+|.     ..|++++|+| ++++|++++.|
T Consensus         5 ~~~~~~i~~~~~s~~~-----~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~l~~~~~d   73 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDR-----TQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-----GQVTGVDWAP-DSNRIVTCGTD   73 (372)
T ss_dssp             ESCSSCCCEEEECTTS-----SEEEEECSSSEEEEEEEETTEEEEEEEEECCS-----SCEEEEEEET-TTTEEEEEETT
T ss_pred             cccCCCeEEEEECCCC-----CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC-----CcccEEEEeC-CCCEEEEEcCC
Confidence            4588999999999999     8999886 5 9999999988656778888887     8999999998 99999999999


Q ss_pred             CeEEEEECCCCeeeee--eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCCCCCCCeEEEEEecC
Q 040307          146 TTCVIWDIDREILETQ--LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~p~  221 (339)
                      |.|++||+++++....  +..|...|.+++|+ ++++|++++.|+.|++||++........ .....|...+.+++|+| 
T Consensus        74 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  152 (372)
T 1k8k_C           74 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-  152 (372)
T ss_dssp             SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-
T ss_pred             CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-
Confidence            9999999988874433  35788999999999 7899999999999999999987642221 11234678999999998 


Q ss_pred             CCCeEEEEeeCCCeEEEEecC-----------------CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          222 DPRFMATVGMDSNKVVVLDIR-----------------FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~-----------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      ++++|++++.|+. |++||++                 ...+++..+..|...|.+++|+|++ .+|++++.|+.|++||
T Consensus       153 ~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          153 NSVLLAAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             TSSEEEEEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEE
T ss_pred             CCCEEEEEcCCCC-EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEE
Confidence            8999999999999 9999964                 1256677888999999999999999 6999999999999999


Q ss_pred             ecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          285 VVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +...+            .......|...|.+++|+|++. +++++.|+.|++|++
T Consensus       231 ~~~~~------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~~~  272 (372)
T 1k8k_C          231 ADKKM------------AVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTY  272 (372)
T ss_dssp             GGGTT------------EEEEEECSSCCEEEEEEEETTE-EEEEETTSSCEEEEE
T ss_pred             CCCCc------------eeEEEccCCCCeEEEEEecCCC-EEEEEeCCeEEEEEc
Confidence            99877            2335557888999999999997 555559999999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=279.07  Aligned_cols=314  Identities=11%  Similarity=0.065  Sum_probs=217.4

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccccee------eEeecCCCCceEEEEc
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN------RLIFDHPYTPTNIAFF   80 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~~   80 (339)
                      +++.+..+.+...|++++|+|+   +++|++|+    .||.|++|++...........      ....+|.+.|.+++|+
T Consensus        88 ~~~~~~~~~~~~~V~~v~~sp~---g~~l~sgs----~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           88 SQKVLTTVFVPGKITSIDTDAS---LDWMLIGL----QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             TCSEEEEEECSSCEEEEECCTT---CSEEEEEE----TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEECCC---CCEEEEEc----CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence            3566777778889999999999   99999999    899999988764432100000      0114689999999999


Q ss_pred             CCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC-------------CccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           81 PSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK-------------TSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        81 ~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      |++.    .+|++|+ + .| +||+++++  ....+..|.             ...+...|++++|+| ++++|++++.|
T Consensus       161 p~~~----~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~D  232 (902)
T 2oaj_A          161 PRDI----GTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHED  232 (902)
T ss_dssp             TTEE----EEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETT
T ss_pred             cCCC----CEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECC
Confidence            9742    5777776 4 88 99999886  666666551             012236799999998 89999999999


Q ss_pred             CeEEEEECCCCeeeee--e---ec-------------cCCceeEEEec----C--CcEEEEEeCC-----CcEEEEEC--
Q 040307          146 TTCVIWDIDREILETQ--L---VA-------------HDREVYDISWG----G--FNVFASVSGD-----CSVRVFDL--  194 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~--~~~l~~~~~d-----~~i~i~d~--  194 (339)
                      |.|++||+++++++..  +   ..             |...|++++|+    +  +.+|++|+.|     ..+.+|++  
T Consensus       233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~  312 (902)
T 2oaj_A          233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY  312 (902)
T ss_dssp             CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence            9999999998876543  2   11             34579999995    1  2456666554     25666652  


Q ss_pred             ---------------------------------------------------------------------CCCcceeeE--
Q 040307          195 ---------------------------------------------------------------------RDKERSTII--  203 (339)
Q Consensus       195 ---------------------------------------------------------------------~~~~~~~~~--  203 (339)
                                                                                           .++......  
T Consensus       313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~  392 (902)
T 2oaj_A          313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL  392 (902)
T ss_dssp             CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred             CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence                                                                                 111100000  


Q ss_pred             --EeCCCCCCCeE----------------------------------EEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-
Q 040307          204 --YENPVQDCPLL----------------------------------RLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-  246 (339)
Q Consensus       204 --~~~~~~~~~v~----------------------------------~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-  246 (339)
                        .....+...|+                                  +++|+| ++++|++|+.|+. |++||+..... 
T Consensus       393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~Dgt-VrlWd~~~g~~~  470 (902)
T 2oaj_A          393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGS-VRIYDASHGDIQ  470 (902)
T ss_dssp             SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSE-EEEEESSCCTTT
T ss_pred             CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCc-EEEEECCCcccc
Confidence              00000112233                                  344566 7899999999999 99999987421 


Q ss_pred             --ceEEE--e-----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC-------CCC----C-------CC--
Q 040307          247 --PVVVL--S-----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR-------SGN----G-------GP--  297 (339)
Q Consensus       247 --~~~~~--~-----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~-------~~~----~-------~~--  297 (339)
                        .....  .     +|...|++++|+|++ ++||+|+.||+|+|||+...+..       +.+    .       .+  
T Consensus       471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (902)
T 2oaj_A          471 DNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV  549 (902)
T ss_dssp             TTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred             CCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence              11111  1     788999999999999 69999999999999999876300       000    0       00  


Q ss_pred             ------------CCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          298 ------------SGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       298 ------------~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                                  .....++ ...+|.+.|++++|+|+| +|++++.|++|+||++
T Consensus       550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred             cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence                        0001122 344699999999999999 8889999999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.3e-34  Score=253.42  Aligned_cols=276  Identities=19%  Similarity=0.236  Sum_probs=229.4

Q ss_pred             Cceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307            8 KPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         8 ~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      ++.+..+. |..+|.+++|+++     +|++|+    .||.|++|++...  +...  .+ ..|...|.++.|++     
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~~~-----~l~s~~----~dg~i~vwd~~~~--~~~~--~~-~~h~~~v~~~~~~~-----  209 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQMRDN-----IIISGS----TDRTLKVWNAETG--ECIH--TL-YGHTSTVRCMHLHE-----  209 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEEETT-----EEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEEET-----
T ss_pred             CcEEEEEcCCCCCEEEEEecCC-----EEEEEe----CCCeEEEEECCcC--cEEE--EE-CCCCCcEEEEEecC-----
Confidence            44444444 6789999999754     899999    7999999887643  3322  33 57999999999963     


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                        ..+++++ | .|++||+.+++  ....+.+|.     ..|.+++|   +++++++|+.||.|++||+++++.+..+.+
T Consensus       210 --~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~-----~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  277 (445)
T 2ovr_B          210 --KRVVSGSRDATLRVWDIETGQ--CLHVLMGHV-----AAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQG  277 (445)
T ss_dssp             --TEEEEEETTSEEEEEESSSCC--EEEEEECCS-----SCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred             --CEEEEEeCCCEEEEEECCCCc--EEEEEcCCc-----ccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence              4666666 5 99999999887  778888887     89999998   568999999999999999999999999999


Q ss_pred             cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      |...|.+++| ++.++++++.|+.|++||+++++....+ .  .|...+.++.++   ++++++++.|+. |++||++. 
T Consensus       278 ~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~--~~~~~v~~~~~~---~~~l~~~~~dg~-i~vwd~~~-  348 (445)
T 2ovr_B          278 HTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTL-T--GHQSLTSGMELK---DNILVSGNADST-VKIWDIKT-  348 (445)
T ss_dssp             CSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEE-C--CCCSCEEEEEEE---TTEEEEEETTSC-EEEEETTT-
T ss_pred             CCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEE-c--CCcccEEEEEEe---CCEEEEEeCCCe-EEEEECCC-
Confidence            9999999999 6889999999999999999998754433 2  366788888874   579999999999 99999987 


Q ss_pred             CCceEEEec---CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee------ecccceeEE
Q 040307          245 TNPVVVLSK---HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC------YQSMAEINV  315 (339)
Q Consensus       245 ~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~  315 (339)
                      .+++..+..   |...|.+++|+  + .+|++++.||.|++||+..++             ....      ..|.+.|++
T Consensus       349 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          349 GQCLQTLQGPNKHQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKTGE-------------FIRNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             CCEEEEECSTTSCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCC-------------EEEEEEECTTGGGTCEEEE
T ss_pred             CcEEEEEccCCCCCCCEEEEEEC--C-CEEEEEeCCCeEEEEECCCCc-------------eeeeeeccccCCCCceEEE
Confidence            667788876   78899999996  3 589999999999999999887             3322      267889999


Q ss_pred             EEecCCCCceEEEecCCe----EEEEeC
Q 040307          316 VRWSPLELDWIAIAFVNK----LQLLKV  339 (339)
Q Consensus       316 ~~~~p~~~~l~~~~~d~~----v~~w~v  339 (339)
                      ++|+|++..+++++.||+    |.+|++
T Consensus       413 ~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          413 IRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             EEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            999999987888899997    999984

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-35  Score=287.74  Aligned_cols=289  Identities=13%  Similarity=0.179  Sum_probs=235.8

Q ss_pred             Cceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307            8 KPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         8 ~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      ++.+..+. |..+|.+++|+|+   +++||+|+    .|+.|+||++...  ....  .+ ..|...|.+++|+|++.. 
T Consensus       647 ~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~----~d~~v~vwd~~~~--~~~~--~~-~~~~~~v~~~~~~~~~~~-  713 (1249)
T 3sfz_A          647 GEKLLDIKAHEDEVLCCAFSSD---DSYIATCS----ADKKVKIWDSATG--KLVH--TY-DEHSEQVNCCHFTNKSNH-  713 (1249)
T ss_dssp             CCEEEEECCCSSCEEEEEECTT---SSEEEEEE----TTSEEEEEETTTC--CEEE--EE-ECCSSCEEEEEECSSSSC-
T ss_pred             CCEEEEeccCCCCEEEEEEecC---CCEEEEEe----CCCeEEEEECCCC--ceEE--EE-cCCCCcEEEEEEecCCCc-
Confidence            34445544 7889999999999   99999999    7999999887653  3332  33 589999999999996521 


Q ss_pred             CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--
Q 040307           87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--  162 (339)
Q Consensus        87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--  162 (339)
                        .++++++ | .|++||+.+++  ....+.+|.     ..|++++|+| ++++|++++.||.|++||+++++....+  
T Consensus       714 --~~l~sg~~d~~v~vwd~~~~~--~~~~~~~h~-----~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  783 (1249)
T 3sfz_A          714 --LLLATGSNDFFLKLWDLNQKE--CRNTMFGHT-----NSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINV  783 (1249)
T ss_dssp             --CEEEEEETTSCEEEEETTSSS--EEEEECCCS-----SCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred             --eEEEEEeCCCeEEEEECCCcc--hhheecCCC-----CCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence              6788877 4 99999999987  788888888     8999999998 9999999999999999998776433222  


Q ss_pred             -----------------------------------------------------eccCCceeEEEec-CCcEEEEEeCCCc
Q 040307          163 -----------------------------------------------------VAHDREVYDISWG-GFNVFASVSGDCS  188 (339)
Q Consensus       163 -----------------------------------------------------~~~~~~v~~~~~~-~~~~l~~~~~d~~  188 (339)
                                                                           .+|...|.+++|+ ++.++++++.|+.
T Consensus       784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~  863 (1249)
T 3sfz_A          784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC  863 (1249)
T ss_dssp             CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred             cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence                                                                 1577889999999 7999999999999


Q ss_pred             EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC-------------------------
Q 040307          189 VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF-------------------------  243 (339)
Q Consensus       189 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~-------------------------  243 (339)
                      |++||+.++...... .  .|...|.+++|+| ++.+|++++.|+. |++||+..                         
T Consensus       864 v~vwd~~~~~~~~~~-~--~h~~~v~~v~~sp-dg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  938 (1249)
T 3sfz_A          864 VELWNIDSRLKVADC-R--GHLSWVHGVMFSP-DGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVL  938 (1249)
T ss_dssp             EEEEETTTTEEEEEE-C--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred             EEEEEcCCCceeeec-C--CCccceEEEEECC-CCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence            999999987643332 2  3677888888887 7888888888887 88887431                         


Q ss_pred             -----------------------------------------------------CCCceEEEecCCCCeeEEEeccCCCCe
Q 040307          244 -----------------------------------------------------PTNPVVVLSKHEGSVNGISWAPLYGRR  270 (339)
Q Consensus       244 -----------------------------------------------------~~~~~~~~~~~~~~v~~~~~~p~~~~~  270 (339)
                                                                           .......+.+|...|.+++|+|++ ++
T Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~ 1017 (1249)
T 3sfz_A          939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KT 1017 (1249)
T ss_dssp             EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SC
T ss_pred             EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CE
Confidence                                                                 023445566788999999999999 69


Q ss_pred             EEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          271 LCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       271 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |++++.||.|++||+....             ......|...|.+++|+|++ .+++++.|+.|++|++
T Consensus      1018 l~s~~~dg~i~vwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A         1018 LISSSEDSVIQVWNWQTGD-------------YVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp             EEEECSSSBEEEEETTTTE-------------EECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEET
T ss_pred             EEEEcCCCEEEEEECCCCc-------------eEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEEC
Confidence            9999999999999999877             45566889999999999987 5889999999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5e-35  Score=254.79  Aligned_cols=260  Identities=17%  Similarity=0.349  Sum_probs=211.0

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC------CcccceeeEeecCCCCceEEEEcCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET------SDFSADNRLIFDHPYTPTNIAFFPSE   83 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~   83 (339)
                      ....+.|.+.|.+++|+|+  ++.+||+|+    .+|.|++|++....      ........+ ..|...|.+++|+|++
T Consensus       121 ~~~~~~h~~~v~~l~~~p~--~~~~lat~~----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~  193 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQ--NACVIATKT----PSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNL  193 (430)
T ss_dssp             EEEEEEESSCCSEEEEETT--EEEEEEEEC----SSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTS
T ss_pred             EEEEEcCCCcEEEEEECCC--CCcEEEEEC----CCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCC
Confidence            3556778999999999996  267899998    79999999987521      111221133 5899999999999998


Q ss_pred             CCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307           84 ETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE  156 (339)
Q Consensus        84 ~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  156 (339)
                      .    .+|++|+ + .|++|++....     ......+.+|.     ..|.+++|+|.++.+|++++.||.|++||++++
T Consensus       194 ~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          194 N----GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT-----AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             T----TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS-----SCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             C----CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC-----CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            2    3888887 4 99999998743     11244566676     899999999867889999999999999999987


Q ss_pred             ---eeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307          157 ---ILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       157 ---~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                         +.+..+..|...|++++|+ ++. +|++++.|+.|++||++....+......  |...|.+++|+|.+..+|++++.
T Consensus       265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeC
Confidence               4677778899999999999 454 7999999999999999986555554554  67899999999954567999999


Q ss_pred             CCCeEEEEecCCCC-------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          232 DSNKVVVLDIRFPT-------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       232 d~~~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      |+. |++||++...             ..+..+.+|...|++++|+|+++.+|++++.||.|+||++...
T Consensus       343 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          343 DRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCc-EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            999 9999998632             4566777899999999999999548999999999999999764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=252.77  Aligned_cols=280  Identities=12%  Similarity=0.050  Sum_probs=216.5

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc-ccceeeE-----------------------------
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD-FSADNRL-----------------------------   66 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~-~~~~~~~-----------------------------   66 (339)
                      ..++.+++|+|+   |++|+++.     ++.|++|++...... ...  .+                             
T Consensus         4 ~~p~~~v~~s~d---g~~l~~~~-----~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (450)
T 2vdu_B            4 IHPLQNLLTSRD---GSLVFAII-----KNCILSFKYQSPNHWEFAG--KWSDDFDKIQESRNTTAKEQQGQSSENENEN   73 (450)
T ss_dssp             ECCCCEEEECSS---SSEEEEEE-----TTEEEEEEEETTTEEEEEE--EEECCC-------------------------
T ss_pred             cccEEEEEecCC---CCEEEEEe-----CCeEEEEECCCCCcceeee--ecCCccccccccccccchhhccccccccccc
Confidence            468999999999   99777776     889999887544300 000  00                             


Q ss_pred             ------------------------eecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeec--CCcceeEEEee--
Q 040307           67 ------------------------IFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIH--DDRTELKSLLN--  115 (339)
Q Consensus        67 ------------------------~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~--~~~~~~~~~~~--  115 (339)
                                              ...|.+.|.+++|+|++     ++| ++++ + .|++|++.  +++  ....+.  
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-----~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~  146 (450)
T 2vdu_B           74 KKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-----SRLIACADSDKSLLVFDVDKTSKN--VLKLRKRF  146 (450)
T ss_dssp             --------------------------CCCCCEEEEEECTTS-----SEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEE
T ss_pred             cccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCC-----CEEEEEECCCCeEEEEECcCCCCc--eeeeeecc
Confidence                                    01345579999999999     675 7776 4 99999998  665  555554  


Q ss_pred             cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee----eeeccCCceeEEEec-C---CcEEEEEeCCC
Q 040307          116 SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET----QLVAHDREVYDISWG-G---FNVFASVSGDC  187 (339)
Q Consensus       116 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~v~~~~~~-~---~~~l~~~~~d~  187 (339)
                      .+.     ..|++++|+| ++++|++++.+|.|++|++.+++...    .+.+|...|++++|+ +   +.+|++++.|+
T Consensus       147 ~~~-----~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~  220 (450)
T 2vdu_B          147 CFS-----KRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE  220 (450)
T ss_dssp             ECS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred             cCC-----CCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence            444     7899999998 99999999999999999998877544    778899999999999 7   78999999999


Q ss_pred             cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--------------
Q 040307          188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--------------  253 (339)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--------------  253 (339)
                      .|++||+++++....+...  |...|.+++|+  ++++|++++.|+. |++||++. ++++..+..              
T Consensus       221 ~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s--d~~~l~s~~~d~~-v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  294 (450)
T 2vdu_B          221 HIKISHYPQCFIVDKWLFG--HKHFVSSICCG--KDYLLLSAGGDDK-IFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLA  294 (450)
T ss_dssp             CEEEEEESCTTCEEEECCC--CSSCEEEEEEC--STTEEEEEESSSE-EEEEETTT-CCEEEEEECHHHHGGGCCTTSBC
T ss_pred             cEEEEECCCCceeeeeecC--CCCceEEEEEC--CCCEEEEEeCCCe-EEEEECCC-CcEeeeecchhhhhhhhhhcccc
Confidence            9999999988755443333  77899999998  8899999999998 99999987 556666652              


Q ss_pred             -----------CCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEe--cCCCCCCCCCCCCCccccee-eecccceeEEEEe
Q 040307          254 -----------HEGSVNGISWAPLYGRRLCSVA-DDSRALIWEV--VGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRW  318 (339)
Q Consensus       254 -----------~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~  318 (339)
                                 ....|.+++|+|++ .+|++++ .|+.|++|++  ....          .+.... ...+ ..|.+++|
T Consensus       295 ~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~----------~l~~~~~~~~~-~~v~~~~~  362 (450)
T 2vdu_B          295 PPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKG----------DLALKQIITFP-YNVISLSA  362 (450)
T ss_dssp             ----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTT----------CEEEEEEEECS-SCEEEEEE
T ss_pred             cccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCC----------ceeeccEeccC-CceEEEEe
Confidence                       23578999999999 5888888 8999999999  4432          112332 3334 88999999


Q ss_pred             cCCCCceEEEec-------CCeEEEEe
Q 040307          319 SPLELDWIAIAF-------VNKLQLLK  338 (339)
Q Consensus       319 ~p~~~~l~~~~~-------d~~v~~w~  338 (339)
                      +|++ .+++++.       ++.|++|.
T Consensus       363 ~~~~-~~v~~~~~~~~~~~~~~i~v~~  388 (450)
T 2vdu_B          363 HNDE-FQVTLDNKESSGVQKNFAKFIE  388 (450)
T ss_dssp             ETTE-EEEEECCTTCCSSCCCSEEEEE
T ss_pred             cCCc-EEEEEecccCCCCCCcceEEEE
Confidence            9964 4555432       45578885

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.9e-34  Score=249.76  Aligned_cols=268  Identities=17%  Similarity=0.216  Sum_probs=223.7

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.+.+.. +++++   +++|++|+    .||.|++|++....  ...  .+ .+|...|.+++|+  +     .+++++
T Consensus       116 ~h~~~v~~-~~~~~---g~~l~sg~----~dg~i~vwd~~~~~--~~~--~~-~~h~~~v~~~~~~--~-----~~l~s~  175 (445)
T 2ovr_B          116 GHDDHVIT-CLQFC---GNRIVSGS----DDNTLKVWSAVTGK--CLR--TL-VGHTGGVWSSQMR--D-----NIIISG  175 (445)
T ss_dssp             CSTTSCEE-EEEEE---TTEEEEEE----TTSCEEEEETTTCC--EEE--EC-CCCSSCEEEEEEE--T-----TEEEEE
T ss_pred             ccCCCcEE-EEEEc---CCEEEEEE----CCCcEEEEECCCCc--EEE--EE-cCCCCCEEEEEec--C-----CEEEEE
Confidence            35565533 46677   88999999    79999998876443  222  22 5899999999998  3     577777


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      + | .|++||+.+++  ....+.+|.     ..|.++.|+   ++.+++|+.||.|++||+++++.+..+.+|...|.++
T Consensus       176 ~~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  245 (445)
T 2ovr_B          176 STDRTLKVWNAETGE--CIHTLYGHT-----STVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  245 (445)
T ss_dssp             ETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             eCCCeEEEEECCcCc--EEEEECCCC-----CcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence            6 5 99999999886  778888888     899999996   4789999999999999999999999999999999999


Q ss_pred             EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      +| +++++++++.|+.|++||+++.+....+ .  .|...+.+++|   ++.++++++.|+. |++||++. .+++..+.
T Consensus       246 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~---~~~~l~~~~~d~~-i~i~d~~~-~~~~~~~~  316 (445)
T 2ovr_B          246 QY-DGRRVVSGAYDFMVKVWDPETETCLHTL-Q--GHTNRVYSLQF---DGIHVVSGSLDTS-IRVWDVET-GNCIHTLT  316 (445)
T ss_dssp             EE-CSSCEEEEETTSCEEEEEGGGTEEEEEE-C--CCSSCEEEEEE---CSSEEEEEETTSC-EEEEETTT-CCEEEEEC
T ss_pred             EE-CCCEEEEEcCCCEEEEEECCCCcEeEEe-c--CCCCceEEEEE---CCCEEEEEeCCCe-EEEEECCC-CCEEEEEc
Confidence            99 5889999999999999999987644433 2  36789999998   6789999999999 99999987 67788999


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eee---cccceeEEEEecCCCCceEEE
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY---QSMAEINVVRWSPLELDWIAI  328 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~i~~~~~~p~~~~l~~~  328 (339)
                      +|...+.++.++  + .+|++++.||.|++||+....             +. ...   .|...|++++|++  ..++++
T Consensus       317 ~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~--~~l~s~  378 (445)
T 2ovr_B          317 GHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQ-------------CLQTLQGPNKHQSAVTCLQFNK--NFVITS  378 (445)
T ss_dssp             CCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC-------------EEEEECSTTSCSSCEEEEEECS--SEEEEE
T ss_pred             CCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCc-------------EEEEEccCCCCCCCEEEEEECC--CEEEEE
Confidence            999999988874  4 489999999999999998877             33 232   2788999999964  578899


Q ss_pred             ecCCeEEEEeC
Q 040307          329 AFVNKLQLLKV  339 (339)
Q Consensus       329 ~~d~~v~~w~v  339 (339)
                      +.||.|++|++
T Consensus       379 ~~dg~v~iwd~  389 (445)
T 2ovr_B          379 SDDGTVKLWDL  389 (445)
T ss_dssp             ETTSEEEEEET
T ss_pred             eCCCeEEEEEC
Confidence            99999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=245.84  Aligned_cols=242  Identities=14%  Similarity=0.186  Sum_probs=211.6

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|...|++++|+|++     ++|++++ + .|++||+.+++  ....+.+|.     ..|.+++|+| ++++|++++.|
T Consensus        29 ~~h~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~~~d   95 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEG-----DLLFSCSKDSSASVWYSLNGE--RLGTLDGHT-----GTIWSIDVDC-FTKYCVTGSAD   95 (369)
T ss_dssp             ECCSSCEEEEEECTTS-----CEEEEEESSSCEEEEETTTCC--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETT
T ss_pred             EEeeceEEEEEEcCCC-----CEEEEEeCCCEEEEEeCCCch--hhhhhhhcC-----CcEEEEEEcC-CCCEEEEEeCC
Confidence            6899999999999999     8888887 5 99999999887  788888888     8999999998 99999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC-----CcEEEEECCCCcceeeE----------EeCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD-----CSVRVFDLRDKERSTII----------YENPVQ  209 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~----------~~~~~~  209 (339)
                      |.|++||+++++.+..+. +...+.+++|+ +++++++++.+     +.|++||++........          ......
T Consensus        96 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             TEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             CeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            999999999999888887 88899999999 79999999999     99999999876532211          122112


Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ...+.+++|+| ++++|++++.++. |++||++....++..+..|...|.+++|+|++ .+|++++.|+.|++||+....
T Consensus       175 ~~~~~~~~~~~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          175 LDAATVAGWST-KGKYIIAGHKDGK-ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             CCCEEEEEECG-GGCEEEEEETTSE-EEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC
T ss_pred             ccceeEEEEcC-CCCEEEEEcCCCE-EEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc
Confidence            23899999998 8999999999998 99999998667788899999999999999999 699999999999999999877


Q ss_pred             CCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC--------------eEEEEeC
Q 040307          290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN--------------KLQLLKV  339 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~--------------~v~~w~v  339 (339)
                                   ......+...+..++|+|+++.+++++.++              .+++|++
T Consensus       252 -------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~  302 (369)
T 3zwl_B          252 -------------VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK  302 (369)
T ss_dssp             -------------EEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred             -------------eeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence                         555556888999999999999988888887              7888874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-34  Score=269.37  Aligned_cols=303  Identities=14%  Similarity=0.160  Sum_probs=235.0

Q ss_pred             CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++.+..+. |..+|.+++|+|+   +++||+|+    .||.|++|++....  ...  .+ ..|...|.+++|+|++  
T Consensus        44 ~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~----~dg~i~vw~~~~~~--~~~--~~-~~~~~~v~~~~~s~~~--  109 (814)
T 3mkq_A           44 TQVEVRSIQVTETPVRAGKFIAR---KNWIIVGS----DDFRIRVFNYNTGE--KVV--DF-EAHPDYIRSIAVHPTK--  109 (814)
T ss_dssp             TTEEEEEEECCSSCEEEEEEEGG---GTEEEEEE----TTSEEEEEETTTCC--EEE--EE-ECCSSCEEEEEECSSS--
T ss_pred             CCceEEEEecCCCcEEEEEEeCC---CCEEEEEe----CCCeEEEEECCCCc--EEE--EE-ecCCCCEEEEEEeCCC--
Confidence            344555555 7889999999999   99999999    79999998876543  222  22 5799999999999999  


Q ss_pred             CCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307           86 LNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV  163 (339)
Q Consensus        86 ~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  163 (339)
                         .+|++++ + .|++|+++++. .....+.+|.     ..|.+++|+|.+++.|++++.||.|++||+.+++....+.
T Consensus       110 ---~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  180 (814)
T 3mkq_A          110 ---PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHE-----HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT  180 (814)
T ss_dssp             ---SEEEEEETTSEEEEEEGGGTS-EEEEEEECCS-----SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred             ---CEEEEEcCCCEEEEEECCCCc-eEEEEEcCCC-----CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence               7888877 4 99999998863 3667777887     8999999998678899999999999999998888777776


Q ss_pred             ccC-CceeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307          164 AHD-REVYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL  239 (339)
Q Consensus       164 ~~~-~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~  239 (339)
                      .+. ..+.+++|+   ++.+|++++.|+.|++||+++++....+ ..  |...+.+++|+| ++.+|++++.|+. |++|
T Consensus       181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~--~~~~v~~~~~~~-~~~~l~~~~~dg~-v~vw  255 (814)
T 3mkq_A          181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EG--HMSNVSFAVFHP-TLPIIISGSEDGT-LKIW  255 (814)
T ss_dssp             CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-EC--CSSCEEEEEECS-SSSEEEEEETTSC-EEEE
T ss_pred             cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cC--CCCCEEEEEEcC-CCCEEEEEeCCCe-EEEE
Confidence            554 889999998   4789999999999999999987754433 33  678999999998 8999999999999 9999


Q ss_pred             ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC----CCC---------CC-----------
Q 040307          240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY----RSG---------NG-----------  295 (339)
Q Consensus       240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~----~~~---------~~-----------  295 (339)
                      |+.. ...+..+..|...+.+++|+|++..++++++.++.+.+|++.....    .+.         ..           
T Consensus       256 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  334 (814)
T 3mkq_A          256 NSST-YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIR  334 (814)
T ss_dssp             ETTT-CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECC
T ss_pred             ECCC-CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecc
Confidence            9987 6778889999999999999999855545555577889998765431    000         00           


Q ss_pred             -------CCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          296 -------GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       296 -------~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                             .............+...+.+++|+|+|+.+++++ |+.+.+|++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          335 GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             cccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence                   0000000111123455678888998887655555 888888863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-35  Score=252.69  Aligned_cols=264  Identities=17%  Similarity=0.160  Sum_probs=207.0

Q ss_pred             EeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC----CCEEE
Q 040307           66 LIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD----TRRVA  140 (339)
Q Consensus        66 ~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~  140 (339)
                      +..+|...|++++|+|+.....+.+++++++ .|++|++.+++  .+..+..+....+...|++++|+| +    +.+|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~   89 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--EIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLA   89 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--CEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--EEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEE
Confidence            3358999999999998511011146666666 99999999776  555555544333447899999998 6    67999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307          141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  218 (339)
                      +|+.||.|++||+++++.+..+.+|...|.+++|+  ++++|++++.|+.|++||+++++....+.....|...|.+++|
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            99999999999999999999999999999999999  4789999999999999999988755554322457889999999


Q ss_pred             ecCCCCeEEEEeeCCCeEEEEecCCCCCce----------------------------EEEecCCCCeeEEEeccCCCCe
Q 040307          219 NKADPRFMATVGMDSNKVVVLDIRFPTNPV----------------------------VVLSKHEGSVNGISWAPLYGRR  270 (339)
Q Consensus       219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~----------------------------~~~~~~~~~v~~~~~~p~~~~~  270 (339)
                      +| ++++|++++.|+. |++||++.. +..                            .....|...|.+++|+  + .+
T Consensus       170 ~~-~~~~l~~~~~dg~-i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~  243 (366)
T 3k26_A          170 DL-LGEKIMSCGMDHS-LKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DL  243 (366)
T ss_dssp             CT-TSSEEEEEETTSC-EEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TE
T ss_pred             CC-CCCEEEEecCCCC-EEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CE
Confidence            98 8999999999999 999999862 222                            2233489999999999  5 59


Q ss_pred             EEEEeCCCcEEEEEecCCCCCCCCCCCC--Cccc-ceeeecccceeEEEEecCC--CCceEEEecCCeEEEEeC
Q 040307          271 LCSVADDSRALIWEVVGPGYRSGNGGPS--GDVE-PELCYQSMAEINVVRWSPL--ELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       271 l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~i~~~~~~p~--~~~l~~~~~d~~v~~w~v  339 (339)
                      |++++.|+.|++||+..... +......  .... ......|...|++++|+|+  ++.|++++.|+.|++|++
T Consensus       244 l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMED-DIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTC-CGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred             EEEEecCCEEEEEeCCCccc-cccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence            99999999999999988761 1000000  0001 1234467888999999999  988889999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-36  Score=263.87  Aligned_cols=249  Identities=12%  Similarity=0.076  Sum_probs=195.6

Q ss_pred             ecCCCCceEEEEcCCCCCC----CCCeEEE-------------------eC-C-cEEEEeecCCccee--EEEeecCCCc
Q 040307           68 FDHPYTPTNIAFFPSEETL----NPDIVAT-------------------SG-D-SLRLWEIHDDRTEL--KSLLNSNKTS  120 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~----~~~~la~-------------------~~-~-~i~iw~~~~~~~~~--~~~~~~~~~~  120 (339)
                      +.+.+.|.+++|+|++...    ..++||+                   ++ | +|+||++.+++...  ...+.+|.  
T Consensus       130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~--  207 (524)
T 2j04_B          130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF--  207 (524)
T ss_dssp             EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC--
T ss_pred             EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC--
Confidence            4577889999999875110    0124444                   43 4 89999998876222  23456666  


Q ss_pred             cCCCCEEEEEEcCC-----CCCEEEEEeCCCeEEEEECCCCee-----------eeeeeccCCceeEEEecCCcEEEEEe
Q 040307          121 EFSSAITSFDWAGF-----DTRRVATCSVDTTCVIWDIDREIL-----------ETQLVAHDREVYDISWGGFNVFASVS  184 (339)
Q Consensus       121 ~~~~~i~~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~  184 (339)
                         ..|.+++|+|.     ++.+||+++.||+|++||+..++.           ...+.+|...|++++|+++..|++|+
T Consensus       208 ---~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs  284 (524)
T 2j04_B          208 ---GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGF  284 (524)
T ss_dssp             ---CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEE
T ss_pred             ---CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEe
Confidence               78999999983     257999999999999999976632           23567899999999999667899999


Q ss_pred             CCCcEEEEECCCCcceeeEEeCCCCCCCeEEE--EEecCCC-CeEEEEeeCCCeEEEEecCCCCCceEEEecCCC--Cee
Q 040307          185 GDCSVRVFDLRDKERSTIIYENPVQDCPLLRL--EWNKADP-RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG--SVN  259 (339)
Q Consensus       185 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~-~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~--~v~  259 (339)
                      .||+|++||++++..+......  |...|.++  +|+| ++ .+|++++.|+. |+|||++. .+++..+.+|..  .|.
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~--H~~~V~sv~~~~s~-~g~~~laS~S~D~t-vklWD~~~-~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQV--HDSYILSVSTAYSD-FEDTVVSTVAVDGY-FYIFNPKD-IATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEEC--SSSCEEEEEEECCT-TSCCEEEEEETTSE-EEEECGGG-HHHHCEEEEECSCCSCC
T ss_pred             CCCEEEEEECCCCCCceEEeec--ccccEEEEEEEcCC-CCCeEEEEeccCCe-EEEEECCC-CCcccccccccccCccc
Confidence            9999999999977544444444  77899999  4665 66 89999999999 99999987 445556666653  588


Q ss_pred             EEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          260 GISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       260 ~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +++|+|++ ..|++++.|++|++||++...            ....+.+|...|++|+|+|+++.|++++.|++|++|++
T Consensus       360 ~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~------------~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          360 PVVYCPQI-YSYIYSDGASSLRAVPSRAAF------------AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CEEEETTT-TEEEEECSSSEEEEEETTCTT------------CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             ceEeCCCc-CeEEEeCCCCcEEEEECcccc------------cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            99999998 589999999999999998876            23456689999999999999999999999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=274.80  Aligned_cols=251  Identities=19%  Similarity=0.242  Sum_probs=210.6

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~  143 (339)
                      .+|.+.|++++|+|++     ++|++|+ | .|++|++..+.......+.+|.     .+|++++|+| +  +++|++|+
T Consensus         6 ~gH~~~V~~l~~s~dg-----~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~-----~~V~~l~~s~-~~~~~~l~s~s   74 (753)
T 3jro_A            6 NAHNELIHDAVLDYYG-----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAH-PKFGTILASCS   74 (753)
T ss_dssp             --CCCCEEEECCCSSS-----CCEEEEETTTEEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-TTSCSEEEEEE
T ss_pred             ccCcceeEEEEECCCC-----CeEEEEECCCcEEEEecCCCCCccceeccCCc-----CceEEEEecC-CCCCCEEEEEe
Confidence            6899999999999999     7888886 5 9999999866555778888888     8999999997 5  89999999


Q ss_pred             CCCeEEEEECCCCe--eeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307          144 VDTTCVIWDIDREI--LETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       144 ~d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  218 (339)
                      .||.|++||+++++  ....+..|...|++++|+ +  ++.+++++.||.|++||++.......... ..|...|.+++|
T Consensus        75 ~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~l~~  153 (753)
T 3jro_A           75 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASW  153 (753)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEEEEE
T ss_pred             CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-ecCCCceEEEEe
Confidence            99999999999886  677778899999999999 5  78999999999999999998753322221 236789999999


Q ss_pred             ecC------------CCCeEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccC---CCCeEEEEeCCCcE
Q 040307          219 NKA------------DPRFMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPL---YGRRLCSVADDSRA  280 (339)
Q Consensus       219 ~p~------------~~~~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~v  280 (339)
                      +|.            ++.++++|+.|+. |++||++...   .+...+.+|...|.+++|+|+   + .+|++++.||.|
T Consensus       154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I  231 (753)
T 3jro_A          154 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTC  231 (753)
T ss_dssp             CCCC---------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCE
T ss_pred             cCcccccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEE
Confidence            985            4899999999999 9999998744   345677889999999999999   6 699999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          281 LIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++||+.......       .........|...|++++|+|+++.+++++.||.|++|++
T Consensus       232 ~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          232 IIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             EEEEESSSSSCC-------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             EEecCCCCCCcc-------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            999999865100       0011233457889999999999999999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-33  Score=248.15  Aligned_cols=279  Identities=14%  Similarity=0.177  Sum_probs=221.6

Q ss_pred             CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--CC
Q 040307            7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--SE   83 (339)
Q Consensus         7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~   83 (339)
                      +++.+..+. |..+|.+++|+|+   + +|++|+    .||.|++|++...  ....  .+ .+|...|.+++|++  ++
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~~---~-~l~s~s----~dg~i~vwd~~~~--~~~~--~~-~~h~~~v~~l~~~~~~~~  217 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAHG---G-ILVSGS----TDRTVRVWDIKKG--CCTH--VF-EGHNSTVRCLDIVEYKNI  217 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECST---T-EEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEEEESSSC
T ss_pred             CCcEEEEEeCCCcCEEEEEEcCC---C-EEEEEe----CCCCEEEEECCCC--cEEE--EE-CCCCCccEEEEEecCCCC
Confidence            345555554 7899999999999   7 889999    7999999887643  3322  23 57999999999995  55


Q ss_pred             CCCCCCeEEEeC-C-cEEEEeecCCcce---------------------eEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307           84 ETLNPDIVATSG-D-SLRLWEIHDDRTE---------------------LKSLLNSNKTSEFSSAITSFDWAGFDTRRVA  140 (339)
Q Consensus        84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~---------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  140 (339)
                           .++++++ | .|++||+.+....                     ....+.+|.     ..|.++.  + ++++++
T Consensus       218 -----~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~--~-~~~~l~  284 (464)
T 3v7d_B          218 -----KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM-----ASVRTVS--G-HGNIVV  284 (464)
T ss_dssp             -----EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS-----SCEEEEE--E-ETTEEE
T ss_pred             -----CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc-----ceEEEEc--C-CCCEEE
Confidence                 6788877 4 9999999876521                     144556666     7888774  4 679999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      +++.|+.|++||+++++.+..+.+|...|.+++|+ +++++++++.|+.|++||+++++....+ .  .|...+.+++|+
T Consensus       285 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~--~h~~~v~~~~~~  361 (464)
T 3v7d_B          285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-Q--GHTALVGLLRLS  361 (464)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE-C--CCSSCEEEEEEC
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e--CCCCcEEEEEEc
Confidence            99999999999999999999999999999999999 7899999999999999999988744433 3  377899999996


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                         +.+|++++.|+. |++||++.. ...... .+...+..++|+|++ .+|++++ ||.|++||+.+++          
T Consensus       362 ---~~~l~s~s~dg~-v~vwd~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~-dg~i~iwd~~~g~----------  423 (464)
T 3v7d_B          362 ---DKFLVSAAADGS-IRGWDANDY-SRKFSY-HHTNLSAITTFYVSD-NILVSGS-ENQFNIYNLRSGK----------  423 (464)
T ss_dssp             ---SSEEEEEETTSE-EEEEETTTC-CEEEEE-ECTTCCCEEEEEECS-SEEEEEE-TTEEEEEETTTCC----------
T ss_pred             ---CCEEEEEeCCCc-EEEEECCCC-ceeeee-cCCCCccEEEEEeCC-CEEEEec-CCeEEEEECCCCc----------
Confidence               489999999999 999999873 333333 356778889999999 5999888 8999999999987          


Q ss_pred             ccccee--eecccceeEEEEecCCCCceEE-EecCCeEEEE
Q 040307          300 DVEPEL--CYQSMAEINVVRWSPLELDWIA-IAFVNKLQLL  337 (339)
Q Consensus       300 ~~~~~~--~~~~~~~i~~~~~~p~~~~l~~-~~~d~~v~~w  337 (339)
                         ++.  ...|...|.+++|+  +..+++ ++.|+.+.+|
T Consensus       424 ---~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          424 ---LVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             ---EEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEE
T ss_pred             ---EEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEE
Confidence               332  45688999999997  335554 5566665554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-34  Score=246.39  Aligned_cols=233  Identities=17%  Similarity=0.311  Sum_probs=201.1

Q ss_pred             ceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           74 PTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      +.++.|+++      .+++++.+ .|++|++.+++  ....+.. |.     ..|++++|+| ++++|++|+.||.|++|
T Consensus        96 ~~~~~~s~~------~l~~~~~d~~v~lw~~~~~~--~~~~~~~~~~-----~~v~~v~~s~-~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           96 LNLLDWSNL------NVVAVALERNVYVWNADSGS--VSALAETDES-----TYVASVKWSH-DGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             CBCEEECTT------SEEEEEETTEEEEEETTTCC--EEEEEECCTT-----CCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             EEEEeecCC------CEEEEECCCeEEEeeCCCCc--EeEeeecCCC-----CCEEEEEECC-CCCEEEEECCCCeEEEE
Confidence            556777763      56666666 99999999987  4444443 45     8999999998 99999999999999999


Q ss_pred             ECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307          152 DIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                      |+.+++.+..+.+|...|.+++|+ +++|++++.|+.|++||++...........  |...|.+++|+| ++.+|++++.
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~s~~~  237 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQG--HSSEVCGLAWRS-DGLQLASGGN  237 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECT-TSSEEEEEET
T ss_pred             ECcCCeEEEEecCCCCceEEEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEcC--CCCCeeEEEEcC-CCCEEEEEeC
Confidence            999999999999999999999995 789999999999999999966555554544  778999999998 9999999999


Q ss_pred             CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecc
Q 040307          232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS  309 (339)
Q Consensus       232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  309 (339)
                      |+. |++||++. ..++..+..|...|.+++|+|++..++++++  .|+.|++||+....             +.....+
T Consensus       238 d~~-v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-------------~~~~~~~  302 (401)
T 4aez_A          238 DNV-VQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-------------RVNTVDA  302 (401)
T ss_dssp             TSC-EEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-------------EEEEEEC
T ss_pred             CCe-EEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-------------EEEEEeC
Confidence            999 99999997 6778888899999999999998877888876  79999999999877             5666677


Q ss_pred             cceeEEEEecCCCCceEEEe--cCCeEEEEeC
Q 040307          310 MAEINVVRWSPLELDWIAIA--FVNKLQLLKV  339 (339)
Q Consensus       310 ~~~i~~~~~~p~~~~l~~~~--~d~~v~~w~v  339 (339)
                      ...|.+++|+|+++.+++++  .|+.|++|++
T Consensus       303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             SSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             CCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence            88999999999999888754  8999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=243.42  Aligned_cols=249  Identities=15%  Similarity=0.199  Sum_probs=199.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC---CCEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD---TRRV  139 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l  139 (339)
                      .+|...|.+++|+|++.    .++++++    + .|++|++.+++......+ +|.     .+|.+++|+| +   +++|
T Consensus        15 ~~h~~~v~~~~~~p~~~----~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~-----~~v~~~~~~~-~~~~~~~l   83 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSA----KFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKA-----KPIKCGTFGA-TSLQQRYL   83 (357)
T ss_dssp             EECSSCEEEEEECTTSS----EEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EES-----SCEEEEECTT-CCTTTCCE
T ss_pred             cCCCCceEEEEEcCCCc----eEEEecCccCCCcEEEEEeCCCCcccceeee-ccc-----CcEEEEEEcC-CCCCCceE
Confidence            57999999999999983    4666663    5 999999998873333333 555     8999999998 6   6999


Q ss_pred             EEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEe------c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-C-CC
Q 040307          140 ATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISW------G-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-P-VQ  209 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~------~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~-~~  209 (339)
                      ++++.||.|++||+++++ .+..+.+|...|.+++|      + ++++|++++.|+.|++||+++.+........ . ..
T Consensus        84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  163 (357)
T 3i2n_A           84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN  163 (357)
T ss_dssp             EEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred             EEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence            999999999999999888 88888999999999955      5 5889999999999999999988743333332 1 12


Q ss_pred             CCCeEEEE----EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc---CCCCeEEEEeCCCcEEE
Q 040307          210 DCPLLRLE----WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP---LYGRRLCSVADDSRALI  282 (339)
Q Consensus       210 ~~~v~~~~----~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~v~i  282 (339)
                      ...+.+++    |+| ++++|++++.++. |++||++. .+. .....|...|.+++|+|   ++ .+|++++.||.|++
T Consensus       164 ~~~v~~~~~~~~~~~-~~~~l~~~~~d~~-i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQ-EERVVCAGYDNGD-IKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHV  238 (357)
T ss_dssp             CCCEEEEEEECCCC--CCCEEEEEETTSE-EEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEE
T ss_pred             CCceEEEEEEeccCC-CCCEEEEEccCCe-EEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEE
Confidence            34788888    666 8999999999998 99999987 333 44567889999999999   77 69999999999999


Q ss_pred             EEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307          283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV  339 (339)
Q Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v  339 (339)
                      ||++.....       ..........|...|++++|+|+++ .+++++.|+.|++|++
T Consensus       239 ~d~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          239 FDMRTQHPT-------KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             EEEEEEETT-------TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred             EeCcCCCcc-------cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence            999986600       0000112237899999999999998 6778999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=256.08  Aligned_cols=265  Identities=8%  Similarity=0.025  Sum_probs=205.7

Q ss_pred             eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      +-+....|.+++|+||   |+++|+++    .|++|+  +  .....     .+ .+|+..|.+++|+|++     .   
T Consensus        11 ~~~~~~~v~sv~~SpD---G~~iASas----~D~TV~--d--~~~~~-----~l-~gh~~~v~~V~FsPdg-----~---   65 (588)
T 2j04_A           11 RKEFEDWKNNLTWARD---GTLYLTTF----PDISIG--Q--PKYAK-----DI-NCNSKNLFHVKEFPLE-----F---   65 (588)
T ss_dssp             SCCCSSSSCCEEECTT---SCEEEECS----SSEEEE--E--ECCCS-----CC-SSBGGGTEEEEEECCC-----C---
T ss_pred             HhHhhccEEEEEECCC---CCEEEEEc----CCceee--c--ccccc-----ee-cCCCccEEEEEECCCC-----C---
Confidence            3445789999999999   99999999    799999  4  22221     22 4899999999999987     1   


Q ss_pred             EeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC-----
Q 040307           93 TSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR-----  167 (339)
Q Consensus        93 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-----  167 (339)
                        .+.+.+|+.+..   ....+ .|.     ..|.+++|+| ++.+||+++.||.|++||.+.  .+..+. |..     
T Consensus        66 --~~~~~~~~~~~~---~~~~~-~~~-----~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~  130 (588)
T 2j04_A           66 --ENKLDFELAQQN---GLLNS-QPV-----CYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR  130 (588)
T ss_dssp             --CCTTTTSCCCSS---CSSTT-SCS-----CCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred             --cceEEEEeCCCc---eEeec-CCC-----CcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence              114444443322   22222 224     7899999999 999999999999999999643  566666 665     


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc------eeeEEe--CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKER------STIIYE--NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV  238 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i  238 (339)
                      .+.+++|+ ++++|++|+.||+|++||+.++..      ......  ..+|...|.+++|+| ++  +++++.|+. +++
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~t-Vrl  206 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNS-VFS  206 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCC-EEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCe-EEE
Confidence            49999999 899999999999999999998753      111111  134678999999998 77  788888998 999


Q ss_pred             EecCCCCC--ceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc-eeeecccceeE
Q 040307          239 LDIRFPTN--PVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP-ELCYQSMAEIN  314 (339)
Q Consensus       239 ~d~~~~~~--~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~  314 (339)
                      ||+.....  ...++ .+|...|.+++|+  + ..||+++ ++.|++||+....             . ....+|...|.
T Consensus       207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~-------------~~~~~~gh~~~V~  269 (588)
T 2j04_A          207 MTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYS-------------ISSLKTGSLENFH  269 (588)
T ss_dssp             ECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTE-------------EEEEECSCCSCCC
T ss_pred             EECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCe-------------EEEEEcCCCceEE
Confidence            99987432  23456 4788999999999  5 5888887 6999999999877             3 34448999999


Q ss_pred             EEEe--cCCCCceEEEecCCeEEEEeC
Q 040307          315 VVRW--SPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       315 ~~~~--~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +++|  +|++..+++++.||+ ++|..
T Consensus       270 ~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          270 IIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             EEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             EEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            9999  999987777888999 99973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.2e-34  Score=246.12  Aligned_cols=240  Identities=17%  Similarity=0.276  Sum_probs=199.7

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      |...|++|+|+|+   +++||+|+    .|+.|+||++...  +...  .+ .+|...+.+++|+  +     .+|++|+
T Consensus       146 ~~~~V~sv~fspd---g~~lasgs----~Dg~v~iWd~~~~--~~~~--~~-~~h~~~v~~~s~~--~-----~~l~sgs  206 (420)
T 4gga_A          146 PGEYISSVAWIKE---GNYLAVGT----SSAEVQLWDVQQQ--KRLR--NM-TSHSARVGSLSWN--S-----YILSSGS  206 (420)
T ss_dssp             TTCCEEEEEECTT---SSEEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEEE--T-----TEEEEEE
T ss_pred             CCCcEEEEEECCC---CCEEEEEE----CCCeEEEEEcCCC--cEEE--EE-eCCCCceEEEeeC--C-----CEEEEEe
Confidence            5678999999999   99999999    7999999887643  3332  33 6899999998885  4     6888887


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeeccCCce
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI----LETQLVAHDREV  169 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~~~~v  169 (339)
                       + .+++|+..... .....+.+|.     ..+..+.|+| ++.++++++.|+.+++|+..+++    .+.....|...|
T Consensus       207 ~d~~i~~~d~~~~~-~~~~~~~~h~-----~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V  279 (420)
T 4gga_A          207 RSGHIHHHDVRVAE-HHVATLSGHS-----QEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  279 (420)
T ss_dssp             TTSEEEEEETTSSS-CEEEEEECCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred             CCCceeEeeecccc-eeeEEecccc-----cceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence             4 99999988764 3567788888     8999999998 99999999999999999998765    345566789999


Q ss_pred             eEEEec--CCcEEEEE--eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCC
Q 040307          170 YDISWG--GFNVFASV--SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRF  243 (339)
Q Consensus       170 ~~~~~~--~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~  243 (339)
                      .+++|+  ..++++++  +.|+.|++||+++++....+..    ...+.++.|+| +++.+++++  .|+. |+|||+.+
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~-~~~~lv~~sg~~d~~-I~iwd~~~  353 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSP-HYKELISGHGFAQNQ-LVIWKYPT  353 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEET-TTTEEEEEECTTTCC-EEEEETTT
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecC-CCCeEEEEEecCCCE-EEEEECCC
Confidence            999999  35676664  4799999999999886555443    36899999998 666666654  6777 99999987


Q ss_pred             CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                       .+++..+.+|.+.|++++|+|++ .+|++|+.|++|+|||+....
T Consensus       354 -~~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          354 -MAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             -CCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCSS
T ss_pred             -CcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence             67899999999999999999999 699999999999999998755

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.2e-34  Score=246.66  Aligned_cols=303  Identities=12%  Similarity=0.087  Sum_probs=200.7

Q ss_pred             eeeeccCCeeEEEeeecC-CcccEEEEeeeccccCCeEEEEecCCCCCc----ccceeeEeecCCCCceEEEEcCCCCC-
Q 040307           12 HTYMAQWPISTVAWSVRH-DRKSRLAVGSFLEDYSNKIELVNFNPETSD----FSADNRLIFDHPYTPTNIAFFPSEET-   85 (339)
Q Consensus        12 ~~~~~~~~v~~i~~sp~~-~~~~~la~g~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~-   85 (339)
                      +.+..+...+++.|.... +...++++|.     ++.|.+|+...+...    ..........+...+..+.|++.... 
T Consensus        10 ~~lpl~~~p~~~~w~~~~~~~~~l~a~g~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (393)
T 4gq1_A           10 YQLPLNVRPYTTTWCSQSPSCSNLLAIGH-----DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYS   84 (393)
T ss_dssp             EECCTTCCEEEEEECTTSGGGTTEEEEEE-----SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEE
T ss_pred             eEecCCCCCeEEEEeCCCCCCCCEEEEEC-----CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcccc
Confidence            334456678888885321 1345666666     899999876543221    11111122345555556655532100 


Q ss_pred             --------------CCCCeEEEeC-C-cEEEEeecCCcce---eEEEeecCCCccCCCCEEEEEEcC-------CCCCEE
Q 040307           86 --------------LNPDIVATSG-D-SLRLWEIHDDRTE---LKSLLNSNKTSEFSSAITSFDWAG-------FDTRRV  139 (339)
Q Consensus        86 --------------~~~~~la~~~-~-~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~l  139 (339)
                                    ....+||+++ | +|+|||++.++..   ....+.+|.     ..|++++|+|       .++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----~~v~~v~~~p~~~~~~~~d~~~l  159 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----NFVNDIDIADVYSADNRLAEQVI  159 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----SCEEEEEEEEEECTTCSEEEEEE
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----CceEEEEEccccccccCCCCCEE
Confidence                          0005788887 5 9999999988622   223355666     9999999986       367899


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-C-cEEEEEeCCCcEEEEECCCCcceeeEE-------------
Q 040307          140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-F-NVFASVSGDCSVRVFDLRDKERSTIIY-------------  204 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-------------  204 (339)
                      |+|+.|++|+|||++++.++..+..|...+.+++|+| + ++|++++.|+.|++||+++++......             
T Consensus       160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred             EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence            9999999999999988888888888999999999994 3 589999999999999999875322211             


Q ss_pred             ---------eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE--------------
Q 040307          205 ---------ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI--------------  261 (339)
Q Consensus       205 ---------~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~--------------  261 (339)
                               ....+...+.++.|++.+++.|++++.|+. +++||+.. .+....+..|...+..+              
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (393)
T 4gq1_A          240 NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPS  317 (393)
T ss_dssp             ESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------------CCSCSEEEECSSCC
T ss_pred             ccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECcc-CCCCceEeeecCccccEEEccccccccccCc
Confidence                     112356678899998669999999999998 99999976 33344444443333333              


Q ss_pred             ----Eecc-CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          262 ----SWAP-LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       262 ----~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                          .|+| .+..++++|+.||.|+|||+..+.            .......|..+|.+++|+|+|++|++++ ++.+.+
T Consensus       318 ~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~------------~~~~~~~~~~~V~svafspdG~~LA~as-~~Gv~l  384 (393)
T 4gq1_A          318 LLGACPHPRYMDYFATAHSQHGLIQLINTYEKD------------SNSIPIQLGMPIVDFCWHQDGSHLAIAT-EGSVLL  384 (393)
T ss_dssp             SSCCEECSSCTTEEEEEETTTTEEEEEETTCTT------------CCEEEEECSSCEEEEEECTTSSEEEEEE-SSEEEE
T ss_pred             ceeEEEccCCCCEEEEEECCCCEEEEEECCCCc------------EEEEecCCCCcEEEEEEcCCCCEEEEEe-CCCeEE
Confidence                3333 233467788899999999999877            3345567888999999999998766665 455666


Q ss_pred             EeC
Q 040307          337 LKV  339 (339)
Q Consensus       337 w~v  339 (339)
                      |++
T Consensus       385 vrL  387 (393)
T 4gq1_A          385 TRL  387 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-34  Score=247.82  Aligned_cols=242  Identities=12%  Similarity=0.113  Sum_probs=203.5

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCC----C-
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFD----T-  136 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~-  136 (339)
                      .+|.+.|++++|+| .      +|++++ | .|++|++.+.+    ......+.+|.     .+|++++|+| +    + 
T Consensus        13 ~~h~~~i~~~~~~~-~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~~g~   79 (397)
T 1sq9_A           13 KAHDADIFSVSACN-S------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-----SGLHHVDVLQ-AIERDAF   79 (397)
T ss_dssp             SCSSSCEEEEEECS-S------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT-----TCEEEEEEEE-EEETTTE
T ss_pred             hhhhcCeEEEEecC-C------eEEEEcCCCEEEEEECCCcccccCCCcceEEecCC-----CcEEEEEEec-ccccCCc
Confidence            58999999999998 4      555555 6 99999998875    34567777887     8999999998 7    8 


Q ss_pred             --CEEEEEeCCCeEEEEECCCCee-----eeeeecc-----CCceeEEEec----C-CcE-EEEEeCCCcEEEEECCC--
Q 040307          137 --RRVATCSVDTTCVIWDIDREIL-----ETQLVAH-----DREVYDISWG----G-FNV-FASVSGDCSVRVFDLRD--  196 (339)
Q Consensus       137 --~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~-~~~-l~~~~~d~~i~i~d~~~--  196 (339)
                        ++|++++.||.|++||+.+++.     ...+..|     ...|.+++|+    + +++ |++++.|+.|++||++.  
T Consensus        80 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  159 (397)
T 1sq9_A           80 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA  159 (397)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred             cccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence              9999999999999999988876     7788888     5899999999    4 678 99999999999999998  


Q ss_pred             ----Cccee-----eEEe----CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---C---CCC
Q 040307          197 ----KERST-----IIYE----NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---H---EGS  257 (339)
Q Consensus       197 ----~~~~~-----~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~---~~~  257 (339)
                          .+...     .+..    ...+...+.+++|+| ++ ++++++.++. |++||++. .+++..+..   |   ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~-i~i~d~~~-~~~~~~~~~~~~h~~~~~~  235 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGT-VQISELST-LRPLYNFESQHSMINNSNS  235 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSE-EEEEETTT-TEEEEEEECCC---CCCCC
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCc-EEEEECCC-CceeEEEeccccccccCCc
Confidence                54333     3221    023678899999998 77 9999999998 99999987 677888888   8   999


Q ss_pred             eeEEEeccCCCCeEEEEeCC---CcEEEEEecCCCCCCCCCCCCCcccceeeec-------------ccceeEEEEecCC
Q 040307          258 VNGISWAPLYGRRLCSVADD---SRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-------------SMAEINVVRWSPL  321 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~p~  321 (339)
                      |.+++|+|++ .+|++++.|   +.|++||+....            .......             |...|.+++|+|+
T Consensus       236 i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          236 IRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             EEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC------------EEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             cceEEECCCC-CEEEEEecCCCCceEEEEECCCCc------------ccceeccCcccccccccccccCCcEEEEEECCC
Confidence            9999999998 699999999   999999998876            2223334             8899999999999


Q ss_pred             CCceEEEecCCeEEEEeC
Q 040307          322 ELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       322 ~~~l~~~~~d~~v~~w~v  339 (339)
                      +++|++++.|+.|++|++
T Consensus       303 ~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          303 GETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             SSEEEEEETTSEEEEEET
T ss_pred             CCEEEEEeCCCeEEEEEc
Confidence            999999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.3e-33  Score=237.07  Aligned_cols=285  Identities=11%  Similarity=0.140  Sum_probs=204.7

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA-   92 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la-   92 (339)
                      ..|..+|.+++|+|+   +++||+|+     ++.++||+.+..  ....    ...+ ..+..+++.+++     .+++ 
T Consensus        16 ~~h~~~V~~v~fs~d---g~~la~g~-----~~~~~iw~~~~~--~~~~----~~~~-~~~~~~~~~~~~-----~~~~~   75 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQD---QSCLILST-----LKSFEIYNVHPV--AHIM----SQEM-RHLSKVRMLHRT-----NYVAF   75 (355)
T ss_dssp             ---CCCCCEEEECTT---SSEEEEEC-----SSEEEEEEETTE--EEEE----EEEC-SCCCEEEECTTS-----SEEEE
T ss_pred             ccCCCceEEEEECCC---CCEEEEEc-----CCEEEEEecCCc--ceee----eeec-CCeEEEEEcCCC-----CEEEE
Confidence            347899999999999   99999998     456899886642  2221    1222 258889999888     5664 


Q ss_pred             EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCce
Q 040307           93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREV  169 (339)
Q Consensus        93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v  169 (339)
                      +++ + .|++||+.+++  .+..+. +.     .+|.++.|++ +  .++++ .++.|++||+.++ +.+..+..   +.
T Consensus        76 ~~~~d~~v~iWd~~~~~--~~~~~~-~~-----~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~  140 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQ--DVSRIK-VD-----APVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FG  140 (355)
T ss_dssp             ECSSTTEEEEEETTTTE--EEEEEE-CS-----SCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred             EECCccEEEEEECCCCc--EEEEEE-CC-----CceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence            444 4 99999999887  666665 33     6899999986 3  34444 4789999999988 66666654   33


Q ss_pred             eEEEecCCcEEEE--EeCCCcEEEEECCCCcc--------------e-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          170 YDISWGGFNVFAS--VSGDCSVRVFDLRDKER--------------S-TIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       170 ~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~--------------~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      ..+++++ .+++.  ++.||.|++||+++...              + .....  .|...|.+++|+| ++++|++++.|
T Consensus       141 ~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--~h~~~v~~~~~s~-~g~~l~s~s~d  216 (355)
T 3vu4_A          141 GVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--AHTNPIKMVRLNR-KSDMVATCSQD  216 (355)
T ss_dssp             EEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEEC--CCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             ceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--ccCCceEEEEECC-CCCEEEEEeCC
Confidence            3445555 56665  57899999999997641              1 22233  4889999999999 99999999999


Q ss_pred             CCeEEEEecCCCCCceEEEe-c-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC-C-------CCccc
Q 040307          233 SNKVVVLDIRFPTNPVVVLS-K-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG-P-------SGDVE  302 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~-------~~~~~  302 (339)
                      +..|++||+++ ++++..+. + |...|.+++|+|++ .+|++++.|+.|++||+........... .       .....
T Consensus       217 ~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
T 3vu4_A          217 GTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS  294 (355)
T ss_dssp             CSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred             CCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence            93399999997 66788887 5 99999999999999 6999999999999999987541110000 0       00000


Q ss_pred             --ce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          303 --PE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       303 --~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                        .. ...........++|+|++..+++++.||.+++|++
T Consensus       295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             SEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              00 00112233477999999998999999999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-35  Score=255.41  Aligned_cols=280  Identities=13%  Similarity=0.151  Sum_probs=205.0

Q ss_pred             EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-cEEE
Q 040307           24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP-SEETLNPDIVATSG-D-SLRL  100 (339)
Q Consensus        24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-~i~i  100 (339)
                      .|+|+   +..++++.          .  |+..+....   .+..+|.+.|++++|+| ++     .+||+|+ | .|+|
T Consensus        34 ~f~~~---~~~~~~~~----------~--w~~~g~~~~---~~~~~h~~~V~~~~~s~~~~-----~~l~s~s~dg~v~v   90 (437)
T 3gre_A           34 EFGPI---QEIVRSPN----------M--GNLRGKLIA---TLMENEPNSITSSAVSPGET-----PYLITGSDQGVIKI   90 (437)
T ss_dssp             GGCCC---CCCCCCCC----------G--GGCCCCEEE---EECTTTTSCEEEEEEECSSS-----CEEEEEETTSEEEE
T ss_pred             hcCCc---cccccccc----------c--ccccceEEe---eeccCCCCceEEEEECCCCC-----CEEEEecCCceEEE
Confidence            46677   76666654          1  443332222   33357899999999999 88     8999987 4 9999


Q ss_pred             EeecC---Cc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC---CCeeeeeeec---------
Q 040307          101 WEIHD---DR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID---REILETQLVA---------  164 (339)
Q Consensus       101 w~~~~---~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~---~~~~~~~~~~---------  164 (339)
                      ||+.+   +. ......+ .|.     ..|++++|+| ++++|++++.||.|++||++   +++....+..         
T Consensus        91 wd~~~~~~~~~~~~~~~~-~h~-----~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~  163 (437)
T 3gre_A           91 WNLKEIIVGEVYSSSLTY-DCS-----STVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK  163 (437)
T ss_dssp             EEHHHHHTTCCCSCSEEE-ECS-----SCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred             eECcccccCcccceeeec-cCC-----CCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc
Confidence            99977   33 1122233 366     8999999998 99999999999999999995   4443333222         


Q ss_pred             ---cCCceeEEEe--c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307          165 ---HDREVYDISW--G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV  238 (339)
Q Consensus       165 ---~~~~v~~~~~--~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i  238 (339)
                         +...+.++.+  + ++.+|++++.|+.|++||+++.+....+.. +.|...|.+++|+| ++++|++++.|+. |++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~-i~i  240 (437)
T 3gre_A          164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDE-ECCVLILGTTRGI-IDI  240 (437)
T ss_dssp             GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECT-TSCEEEEEETTSC-EEE
T ss_pred             CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECC-CCCEEEEEcCCCe-EEE
Confidence               4456666664  3 588999999999999999999875554433 22567999999998 8999999999999 999


Q ss_pred             EecCCCCCceEEEe-cCCCCeeEEEecc----CCCCeEEEEeCCCcEEEEEecCCCCCC---CCCC--------CC-Ccc
Q 040307          239 LDIRFPTNPVVVLS-KHEGSVNGISWAP----LYGRRLCSVADDSRALIWEVVGPGYRS---GNGG--------PS-GDV  301 (339)
Q Consensus       239 ~d~~~~~~~~~~~~-~~~~~v~~~~~~p----~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~--------~~-~~~  301 (339)
                      ||++. .+++..+. .|...|.+++|+|    ++ .+|++++.||.|++||+.......   ....        +. ..+
T Consensus       241 wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (437)
T 3gre_A          241 WDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL  318 (437)
T ss_dssp             EETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred             EEcCC-ccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence            99997 66777775 7788999996654    56 599999999999999998765100   0000        00 000


Q ss_pred             cceeeec--ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          302 EPELCYQ--SMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       302 ~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ......+  |...|++++|+ +++.|++++.|+.|++|++
T Consensus       319 ~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          319 EELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             GGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred             ccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence            0001122  77889999999 6677889999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=253.19  Aligned_cols=249  Identities=13%  Similarity=0.208  Sum_probs=192.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---------ceeEEEeecCCCc-------cCCCCEEEE
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---------TELKSLLNSNKTS-------EFSSAITSF  129 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---------~~~~~~~~~~~~~-------~~~~~i~~~  129 (339)
                      ..+.+.|.+++|+|++     .+||+|+ | .|+||++.+.+         ......+.+|..+       .....|+++
T Consensus        25 ~~~~~~V~~v~~s~~g-----~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           25 VAEADIISTVEFNHSG-----ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             CCGGGSEEEEEECSSS-----SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred             ccccCcEEEEEECCCC-----CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence            4567899999999999     8999987 4 99999998754         2246667776410       001569999


Q ss_pred             EEcCCCC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------ee-eeccCC
Q 040307          130 DWAGFDT--RRVATCSVDTTCVIWDIDREILE---------------------------------------TQ-LVAHDR  167 (339)
Q Consensus       130 ~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~---------------------------------------~~-~~~~~~  167 (339)
                      +|+| ++  .+|++++.|+.|++||+.+++..                                       .. ..+|..
T Consensus       100 ~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B          100 RWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             EECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             EEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            9998 66  79999999999999998764431                                       12 357999


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-----eCCCCCCCeEEEEEecCCC-CeEEEEeeCCCeEEEEe
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-----ENPVQDCPLLRLEWNKADP-RFMATVGMDSNKVVVLD  240 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~-~~l~~~~~d~~~i~i~d  240 (339)
                      .|.+++|+ ++++|+++ .|+.|++||++.........     ....|...|.+++|+| ++ ++|++++.|+. |++||
T Consensus       179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~-i~iwd  255 (447)
T 3dw8_B          179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT-IRLCD  255 (447)
T ss_dssp             CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC-EEEEE
T ss_pred             ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe-EEEEE
Confidence            99999999 78899998 79999999999544333221     1234778999999999 65 99999999999 99999


Q ss_pred             cCCCCC---ceEEEecCCC------------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-
Q 040307          241 IRFPTN---PVVVLSKHEG------------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-  304 (339)
Q Consensus       241 ~~~~~~---~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-  304 (339)
                      ++....   .+..+..|..            .|.+++|+|++ .+|++++. +.|++||++...            .+. 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~------------~~~~  321 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMEN------------RPVE  321 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCS------------SCSC
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCc------------cccc
Confidence            987332   2678888876            89999999999 69999998 999999998733            122 


Q ss_pred             eeecccc---------------eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          305 LCYQSMA---------------EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       305 ~~~~~~~---------------~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ....|..               .+..++|+|++++|++++.|+.|++|++
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence            2333432               1345999999999999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=266.86  Aligned_cols=253  Identities=15%  Similarity=0.212  Sum_probs=209.4

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIV   91 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l   91 (339)
                      ..|.++|++++|+|+   +++|++|+    .||.|+||++.........  .+ .+|.+.|.+++|+|+  +     .+|
T Consensus         6 ~gH~~~V~~l~~s~d---g~~latg~----~dg~I~vwd~~~~~~~~~~--~l-~~h~~~V~~l~~s~~~~~-----~~l   70 (753)
T 3jro_A            6 NAHNELIHDAVLDYY---GKRLATCS----SDKTIKIFEVEGETHKLID--TL-TGHEGPVWRVDWAHPKFG-----TIL   70 (753)
T ss_dssp             --CCCCEEEECCCSS---SCCEEEEE----TTTEEEEEEEETTEEEEEE--EE-CCCSSCEEEEEECCTTSC-----SEE
T ss_pred             ccCcceeEEEEECCC---CCeEEEEE----CCCcEEEEecCCCCCccce--ec-cCCcCceEEEEecCCCCC-----CEE
Confidence            357899999999999   99999999    7999999988754433332  33 589999999999988  6     788


Q ss_pred             EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe--eeeeeecc
Q 040307           92 ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI--LETQLVAH  165 (339)
Q Consensus        92 a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~  165 (339)
                      ++|+ | .|++||+.+++......+..|.     ..|++++|+| +  ++++++|+.||.|++||++++.  ....+.+|
T Consensus        71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-----~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~  144 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGRWSQIAVHAVHS-----ASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH  144 (753)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred             EEEeCCCeEEEEECCCCcccccccccCCC-----CCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence            8887 5 9999999998755777777887     8999999998 7  8999999999999999998773  34456789


Q ss_pred             CCceeEEEecC--------------CcEEEEEeCCCcEEEEECCCCcce-eeEEeCCCCCCCeEEEEEecCC--CCeEEE
Q 040307          166 DREVYDISWGG--------------FNVFASVSGDCSVRVFDLRDKERS-TIIYENPVQDCPLLRLEWNKAD--PRFMAT  228 (339)
Q Consensus       166 ~~~v~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~--~~~l~~  228 (339)
                      ...|.+++|++              +.+|++++.||.|++||+++.... ........|...|.+++|+|+.  +.+|++
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s  224 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  224 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence            99999999995              789999999999999999987533 2222233478899999999933  899999


Q ss_pred             EeeCCCeEEEEecCCCCC----ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          229 VGMDSNKVVVLDIRFPTN----PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++.|+. |++||++....    .......|...|++++|+|++ .+|++++.||.|++|++....
T Consensus       225 ~s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          225 VSQDRT-CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EESSSC-EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSSS
T ss_pred             EecCCE-EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCCC
Confidence            999999 99999987432    233345578899999999999 599999999999999998543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.6e-34  Score=250.69  Aligned_cols=207  Identities=16%  Similarity=0.181  Sum_probs=169.9

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|...|++|+|+|...    .+||+|+ | .|+|||+.+++......+.+|.     ..|++++|+|.++++|++|+.|
T Consensus       116 ~~~~~~V~~l~~~P~~~----~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~-----~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          116 APFDRRATSLAWHPTHP----STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG-----GSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             EECSSCEEEEEECSSCT----TCEEEEETTSCEEEECSSCCSCCEEECCCSSS-----CCCCEEEECSSCTTEEEEECSS
T ss_pred             CCCCCCEEEEEEeCCCC----CEEEEEeCCCEEEEEECCCCCceeEEEccCCC-----CCEEEEEEeCCCCCEEEEEeCC
Confidence            57888999999999653    7999987 4 9999999887655556667787     8999999998778999999999


Q ss_pred             CeEEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          146 TTCVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      |+|++||++++.......  .+...+.+++|+ ++.+|++|+.||.|++||++.... .   ....|...|.+++|+|..
T Consensus       187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-~---~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-W---NLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC-C---CSBCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee-E---EEecccceEEeeeecCCC
Confidence            999999998765433332  233457889999 789999999999999999976432 1   223477899999999965


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..+|++++.|+. |++||++....  .+....+|...|++++|+|++ .+|++++.||.|+|||+....
T Consensus       263 ~~~~~s~s~d~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          263 DWFLATASVDQT-VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             SSEEEEEETTSB-CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS
T ss_pred             ceEEEEecCcce-eeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc
Confidence            668889999999 99999987432  223346789999999999999 699999999999999998876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-33  Score=231.26  Aligned_cols=233  Identities=13%  Similarity=0.117  Sum_probs=199.1

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.+.|.+++| |++     .+|++++ | .|++||+.+.+  ....+..|.     ..|.+++|+| ++++|++++.|
T Consensus        15 ~~h~~~v~~~~~-~~~-----~~l~s~~~dg~v~vw~~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d   80 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDD-----SKVASVSRDGTVRLWSKDDQW--LGTVVYTGQ-----GFLNSVCYDS-EKELLLFGGKD   80 (313)
T ss_dssp             CCCSSCEEEEEE-EET-----TEEEEEETTSEEEEEEESSSE--EEEEEEECS-----SCEEEEEEET-TTTEEEEEETT
T ss_pred             hCCCCCcEEEEe-cCC-----CEEEEEEcCCcEEEEECCCCE--EEEEeecCC-----ccEEEEEECC-CCCEEEEecCC
Confidence            689999999999 888     7888887 4 99999998876  677777777     8999999998 99999999999


Q ss_pred             CeEEEEECCCC---eeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          146 TTCVIWDIDRE---ILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       146 ~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                      |.|++|++...   +.+..+..|...|.+++|. ++++++++.|+.|++||  ..+ .......  |...+.+++|+|.+
T Consensus        81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~-~~~~~~~--~~~~v~~~~~~~~~  154 (313)
T 3odt_A           81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGS-LVYNLQA--HNASVWDAKVVSFS  154 (313)
T ss_dssp             SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTE-EEEEEEC--CSSCEEEEEEEETT
T ss_pred             CeEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCc-EEEeccc--CCCceeEEEEccCC
Confidence            99999998654   4567778899999999995 78999999999999999  222 2233333  67899999999878


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      ++++++++.++. |++||.   ......+.. |...+.+++|+|++ . +++++.||.|++||++..+            
T Consensus       155 ~~~l~~~~~d~~-i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~------------  216 (313)
T 3odt_A          155 ENKFLTASADKT-IKLWQN---DKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD------------  216 (313)
T ss_dssp             TTEEEEEETTSC-EEEEET---TEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC------------
T ss_pred             CCEEEEEECCCC-EEEEec---CceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh------------
Confidence            999999999999 999994   445667776 88999999999998 4 9999999999999999877            


Q ss_pred             cceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .......|...|++++|+|++ .+++++.|+.|++|++
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred             hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEEC
Confidence            223455789999999999999 5899999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-33  Score=239.87  Aligned_cols=250  Identities=8%  Similarity=0.040  Sum_probs=189.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeee-------ccccCCeEEEEecCCCCCcccceeeE----eecCCCCceEEEEcCCCC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSF-------LEDYSNKIELVNFNPETSDFSADNRL----IFDHPYTPTNIAFFPSEE   84 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~-------~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~   84 (339)
                      +.+.|.+++++     +..+++|..       .+..|+.+++|+++............    ...+...+.+++|+||+ 
T Consensus        72 ~~~~v~s~~~~-----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-  145 (365)
T 4h5i_A           72 NDDSPTAIDAS-----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-  145 (365)
T ss_dssp             TSCCCCEEEEE-----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-
T ss_pred             CCCceEEEEeC-----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-
Confidence            34567776654     446766643       22358899999987765544332111    12345568899999999 


Q ss_pred             CCCCCeEEEe--C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307           85 TLNPDIVATS--G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        85 ~~~~~~la~~--~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                          +++|++  + | +|+|||+++.+  ++..+. |.     ..|.+++|+| ++++|++++.+ .+.+|+..+++.+.
T Consensus       146 ----~~la~as~~~d~~i~iwd~~~~~--~~~~~~-~~-----~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          146 ----TVAAIASSKVPAIMRIIDPSDLT--EKFEIE-TR-----GEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIA  211 (365)
T ss_dssp             ----SCEEEEESCSSCEEEEEETTTTE--EEEEEE-CS-----SCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEE
T ss_pred             ----CEEEEEECCCCCEEEEeECCCCc--EEEEeC-CC-----CceEEEEEcc-CCceEEeccce-eEEEEEeccCccee
Confidence                776543  3 4 89999999886  666665 44     6899999998 99999999855 56666666666443


Q ss_pred             --eeeccCCceeEEEec-CCcEEEEEeCCC----cEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          161 --QLVAHDREVYDISWG-GFNVFASVSGDC----SVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       161 --~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                        ....|...|.+++|+ ++..+++++.|+    .+++||+....... .......|...|.+++|+| ++++||+|+.|
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D  290 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASND  290 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETT
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCC
Confidence              345688899999999 899999999887    58889988765322 1222234678999999999 99999999999


Q ss_pred             CCeEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          233 SNKVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +. |+|||+++ .+++.. +.+|...|++++|+|++ ++|++|+.|++|+|||+....
T Consensus       291 ~~-V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          291 NS-IALVKLKD-LSMSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             SC-EEEEETTT-TEEEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTTT
T ss_pred             CE-EEEEECCC-CcEEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC
Confidence            99 99999987 566766 47899999999999999 699999999999999997544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=6.7e-33  Score=241.65  Aligned_cols=288  Identities=6%  Similarity=-0.016  Sum_probs=224.2

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +.+..+.....+.+++|+|+   +.++++++    .++.|++|+.................|...|.+++|+|++     
T Consensus       114 ~~~~~~~~~~~~~~~~~s~~---~~~~~~~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-----  181 (433)
T 3bws_A          114 RFISRFKTGFQPKSVRFIDN---TRLAIPLL----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-----  181 (433)
T ss_dssp             EEEEEEECSSCBCCCEESSS---SEEEEEBT----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-----
T ss_pred             eEEEEEcCCCCceEEEEeCC---CeEEEEeC----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-----
Confidence            45555666677889999998   88899888    6899999876643322111000113788899999999999     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEECCCCeeeeeeecc
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                      .++++++ + .|++||+++++  ....+..|.     ..+.+++|+| +++.++ +++.++.|++||+++++.+..+.. 
T Consensus       182 ~~~~s~~~d~~v~~~d~~~~~--~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-  252 (433)
T 3bws_A          182 ELWVSQMQANAVHVFDLKTLA--YKATVDLTG-----KWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-  252 (433)
T ss_dssp             EEEEEEGGGTEEEEEETTTCC--EEEEEECSS-----SSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCC-
T ss_pred             EEEEEECCCCEEEEEECCCce--EEEEEcCCC-----CCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecC-
Confidence            8888887 3 99999999876  667777766     7899999998 777775 555899999999999988877764 


Q ss_pred             CCceeEEEec-CCcEEEEEe--------CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC-eEEEEeeCCCe
Q 040307          166 DREVYDISWG-GFNVFASVS--------GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR-FMATVGMDSNK  235 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~d~~~  235 (339)
                      ...+.+++|+ +++.+++++        .|+.|++||+++++......    +...+..++|+| +++ ++++++.++. 
T Consensus       253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~-  326 (433)
T 3bws_A          253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGN-TENKIYVSDMCCSK-  326 (433)
T ss_dssp             CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECS-STTEEEEEETTTTE-
T ss_pred             CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECC-CCCEEEEEecCCCE-
Confidence            4568999999 677888887        58899999999886544432    235788999998 665 5566677777 


Q ss_pred             EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC---------------CCcEEEEEecCCCCCCCCCCCCCc
Q 040307          236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD---------------DSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      |++||+.. .+.+..+. +...+.+++|+|++ ++|++++.               ||.|++||+...+           
T Consensus       327 v~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-----------  392 (433)
T 3bws_A          327 IEVYDLKE-KKVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-----------  392 (433)
T ss_dssp             EEEEETTT-TEEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-----------
T ss_pred             EEEEECCC-CcEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCc-----------
Confidence            99999986 55555555 67789999999999 57777775               5799999998876           


Q ss_pred             ccceeeecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307          301 VEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                        ..........+.+++|+|+++.+++++ .|+.|++|++
T Consensus       393 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          393 --VKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             --EEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             --EEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence              444444566799999999999888776 4999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.1e-33  Score=237.08  Aligned_cols=245  Identities=12%  Similarity=0.080  Sum_probs=197.2

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEe
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCS  143 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~  143 (339)
                      .+|.+.|.+++|+|++     .+|++++ + .|++|++.+.+ ......+..|.     ..|++++|+| +++ +|++|+
T Consensus         8 ~~h~~~v~~~~~s~~~-----~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~l~~~~   76 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSK-----SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK-----HPLLCCNFID-NTDLQIYVGT   76 (342)
T ss_dssp             SCCSSCEEEEEEEGGG-----TEEEEEETTSEEEEEEEETTTTEEEEEEEEECS-----SCEEEEEEEE-SSSEEEEEEE
T ss_pred             cCCCCcEEEEEEcCCC-----CEEEEEcCCCeEEEEEeCCCCccccceeeeecC-----CceEEEEECC-CCCcEEEEEc
Confidence            4799999999999999     7888876 5 99999998875 12234455666     8999999998 899 999999


Q ss_pred             CCCeEEEEEC-CCCeeeeeeec--cCCceeEEEecCCcEEEEEeCCCcEEEEECCC---------CcceeeEEeCCCCCC
Q 040307          144 VDTTCVIWDI-DREILETQLVA--HDREVYDISWGGFNVFASVSGDCSVRVFDLRD---------KERSTIIYENPVQDC  211 (339)
Q Consensus       144 ~d~~v~i~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~  211 (339)
                      .||.|++||+ ++++. ..+..  |...|.+++|+++++|++++.|+.|++||+++         .+....+    .+..
T Consensus        77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~  151 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----KVKN  151 (342)
T ss_dssp             TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----SSCC
T ss_pred             CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE----eeCC
Confidence            9999999999 77754 66778  99999999999888999999999999999986         4422221    1567


Q ss_pred             CeEEEEEecCCCCeEEEEeeCCCeEEEEecCC-CCCc-eEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCC
Q 040307          212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRF-PTNP-VVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~-~~~~-~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      .+.+++|+| ++  +++++.++. |++||++. .... ......|...+.+++|+| ++ .+|++++.||.|++|+++..
T Consensus       152 ~v~~~~~~~-~~--l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          152 KIFTMDTNS-SR--LIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             CEEEEEECS-SE--EEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTT
T ss_pred             ceEEEEecC-Cc--EEEEeCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCC
Confidence            899999997 44  889999998 99999987 4443 334556788999999999 98 69999999999999999886


Q ss_pred             CCCCCCCCCCCcccceeeeccc---------ceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          289 GYRSGNGGPSGDVEPELCYQSM---------AEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .. ..     ..........|.         ..|.+++|+|++++|++++.|+.|++|++
T Consensus       227 ~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          227 GD-DY-----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CC-ST-----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             Cc-cc-----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            10 00     000122333443         48999999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.1e-33  Score=239.14  Aligned_cols=252  Identities=14%  Similarity=0.155  Sum_probs=190.1

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|...|.+++|+|++.    ++|++|+ | .|++|++.+.+........+|.     ..|.+++|+|.++++|++++.|
T Consensus        70 ~~h~~~v~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHP----TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG-----DAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             CCCSSCEEEEEECSSCT----TEEEEEEBTSCEEEEETTSTTCEEEECCCSTT-----CBEEEEEEETTEEEEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCC----CEEEEEcCCCeEEEEeCCCcccceeeecCCcC-----CceeEEEeCCCCCCEEEEEeCC
Confidence            58999999999999974    6888887 5 9999999988733333334576     8999999998567999999999


Q ss_pred             CeEEEEECCCCeeeeeeec---cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          146 TTCVIWDIDREILETQLVA---HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                      +.|++||++. ..+..+..   |...|.+++|+ ++++|++++.|+.|++||++. + .......  |...|.+++|+| 
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~-~~~~~~~--h~~~v~~~~~~~-  214 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-H-EIFKEKL--HKAKVTHAEFNP-  214 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-C-EEEEEEC--SSSCEEEEEECS-
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-C-EEEEecc--CCCcEEEEEECC-
Confidence            9999999986 44555543   34789999999 789999999999999999953 3 2222333  678999999999 


Q ss_pred             CCC-eEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCCCCCC-CC
Q 040307          222 DPR-FMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPGYRSG-NG  295 (339)
Q Consensus       222 ~~~-~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~  295 (339)
                      ++. +|++++.|+. |++||++...   .++..+ .|...|.+++|+| ++ .+|++++.|+.|++||+........ ..
T Consensus       215 ~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~  291 (383)
T 3ei3_B          215 RCDWLMATSSVDAT-VKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIII  291 (383)
T ss_dssp             SCTTEEEEEETTSE-EEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred             CCCCEEEEEeCCCE-EEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcccccccc
Confidence            666 9999999998 9999998632   334444 6999999999999 88 6999999999999999998761000 00


Q ss_pred             C---CCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          296 G---PSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       296 ~---~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .   ......+. ........+..++|+|++++  +++.|+.|++|++
T Consensus       292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~  337 (383)
T 3ei3_B          292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA  337 (383)
T ss_dssp             CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET
T ss_pred             ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec
Confidence            0   00000000 01111244556777777765  7779999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.7e-33  Score=240.35  Aligned_cols=249  Identities=15%  Similarity=0.195  Sum_probs=201.7

Q ss_pred             eccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcc---cceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307           15 MAQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF---SADNRLIFDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        15 ~~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      .|..+|.+++|+| +   +.+||+|+    .||.|+||++.......   .....+ .+|...|.+++|+|++.    .+
T Consensus        79 ~h~~~V~~~~~~p~~---~~~l~s~s----~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~----~~  146 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHN---DNVIASGS----EDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQ----NV  146 (402)
T ss_dssp             CCSSCEEEEEECTTC---TTEEEEEE----TTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBT----TE
T ss_pred             cCCCCEEEEEeCCCC---CCEEEEEe----CCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCC----CE
Confidence            4788999999999 7   99999999    79999999887653211   111123 68999999999999973    58


Q ss_pred             EEEeC-C-cEEEEeecCCcceeEEEe--ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-ecc
Q 040307           91 VATSG-D-SLRLWEIHDDRTELKSLL--NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAH  165 (339)
Q Consensus        91 la~~~-~-~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~  165 (339)
                      |++++ | .|++||+.+++  ....+  ..|.     ..|.+++|+| ++++|++++.|+.|++||+++++.+..+ ..|
T Consensus       147 l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  218 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGA--AVLTLGPDVHP-----DTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPH  218 (402)
T ss_dssp             EEEEETTSCEEEEETTTTE--EEEEECTTTCC-----SCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEcCCCEEEEEECCCCC--ccEEEecCCCC-----CceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCC
Confidence            88876 5 99999999886  67777  6677     8999999998 9999999999999999999999988888 678


Q ss_pred             CCc-eeEEEec-CCcEEEEE---eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE-EeeCCCeEEEE
Q 040307          166 DRE-VYDISWG-GFNVFASV---SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT-VGMDSNKVVVL  239 (339)
Q Consensus       166 ~~~-v~~~~~~-~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d~~~i~i~  239 (339)
                      .+. +.++.|+ ++.+|+++   +.|+.|++||+++.+.+...... .+...+.+++|+| ++++|++ ++.|+. |++|
T Consensus       219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~g~~dg~-i~i~  295 (402)
T 2aq5_A          219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDP-DTNIVYLCGKGDSS-IRYF  295 (402)
T ss_dssp             CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEET-TTTEEEEEETTCSC-EEEE
T ss_pred             CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcC-CCCEEEEEEcCCCe-EEEE
Confidence            765 8999999 78888888   78999999999987754443332 2456899999998 7777765 556888 9999


Q ss_pred             ecCCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          240 DIRFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       240 d~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |+......+..+..|  ...|.+++|+|++ .++++  .++.+++|++....
T Consensus       296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~-~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          296 EITSEAPFLHYLSMFSSKESQRGMGYMPKR-GLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EECSSTTCEEEEEEECCSSCCSEEEECCGG-GSCGG--GTEEEEEEEEETTE
T ss_pred             EecCCCcceEeecccccCCcccceEEeccc-cccee--cceeEEEEEcCCCc
Confidence            998844335555554  5899999999998 46654  56799999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=236.16  Aligned_cols=282  Identities=16%  Similarity=0.237  Sum_probs=195.7

Q ss_pred             ccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           16 AQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        16 ~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      |..+|.+++|+| +   +.+|++++    .|+.|++|++...  ....    ...+...+.++.|+|.+.  +..+++++
T Consensus        98 ~~~~v~~~~~~~~~---~~~l~s~~----~d~~i~iwd~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~  162 (408)
T 4a11_B           98 HRYSVETVQWYPHD---TGMFTSSS----FDKTLKVWDTNTL--QTAD----VFNFEETVYSHHMSPVST--KHCLVAVG  162 (408)
T ss_dssp             CSSCEEEEEECTTC---TTCEEEEE----TTSEEEEEETTTT--EEEE----EEECSSCEEEEEECSSCS--SCCEEEEE
T ss_pred             CCCcEEEEEEccCC---CcEEEEEe----CCCeEEEeeCCCC--ccce----eccCCCceeeeEeecCCC--CCcEEEEE
Confidence            788999999999 5   78999999    7999999877643  3332    246788999999999652  11478777


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCe-eeeee--------
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREI-LETQL--------  162 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~-~~~~~--------  162 (339)
                      + + .|++||+.+++  ....+..|.     ..|.+++|+| ++. +|++++.||.|++||++++. .+..+        
T Consensus       163 ~~~~~v~~~d~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  234 (408)
T 4a11_B          163 TRGPKVQLCDLKSGS--CSHILQGHR-----QEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS  234 (408)
T ss_dssp             ESSSSEEEEESSSSC--CCEEECCCC-----SCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred             cCCCeEEEEeCCCcc--eeeeecCCC-----CcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence            6 4 99999999886  677788887     8999999998 666 69999999999999998765 33333        


Q ss_pred             -------eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          163 -------VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       163 -------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                             ..|...|.+++|+ ++++|++++.|+.|++||+++.+......... ..........+.+..+..+++++.++
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred             eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence                   5688999999999 78999999999999999999887543322110 01111122233333566777888888


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI  313 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (339)
                      . |++||+.. .+++..+.+|...|.+++|+|++ .+|++++.||.|++||+...+             +........  
T Consensus       315 ~-i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~-------------~~~~~~~~~--  376 (408)
T 4a11_B          315 T-IAVYTVYS-GEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYE-------------PVPDDDETT--  376 (408)
T ss_dssp             E-EEEEETTT-CCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC--------------------------
T ss_pred             E-EEEEECcC-CcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCC-------------ccCCCCceE--
Confidence            8 99999987 77889999999999999999999 699999999999999999987             222111111  


Q ss_pred             EEEEecCCCC-ceEEEecCCeEEEEe
Q 040307          314 NVVRWSPLEL-DWIAIAFVNKLQLLK  338 (339)
Q Consensus       314 ~~~~~~p~~~-~l~~~~~d~~v~~w~  338 (339)
                      ....+.|... .+.+.+.++.+++|.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          377 TKSQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             --------------------------
T ss_pred             eccccccccceeecccCccCceeecC
Confidence            1223344332 244566889999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-32  Score=237.79  Aligned_cols=244  Identities=13%  Similarity=0.053  Sum_probs=194.6

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc-ceeEEEeecCCC------------------------------
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR-TELKSLLNSNKT------------------------------  119 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~-~~~~~~~~~~~~------------------------------  119 (339)
                      .++.+++|+|++     ++|+++.+ .|++||+.+++ ...+..+..+..                              
T Consensus         5 ~p~~~v~~s~dg-----~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            5 HPLQNLLTSRDG-----SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             CCCCEEEECSSS-----SEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             ccEEEEEecCCC-----CEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            478999999999     77777766 99999998876 112223322110                              


Q ss_pred             -------------------ccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECC--CCeeeeeee--ccCCceeEEEec
Q 040307          120 -------------------SEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDID--REILETQLV--AHDREVYDISWG  175 (339)
Q Consensus       120 -------------------~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~--~~~~~~~~~--~~~~~v~~~~~~  175 (339)
                                         ..+...|++++|+| ++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             --------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                               11224799999998 88885 899999999999998  788777775  567889999999


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCC---CCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          176 -GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKAD---PRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       176 -~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                       ++.+|++++.++.|++|++.+..... .......|...|.+++|+| +   +++|++++.|+. |++||++. ...+..
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~-i~vwd~~~-~~~~~~  235 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEH-IKISHYPQ-CFIVDK  235 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSC-EEEEEESC-TTCEEE
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCc-EEEEECCC-Cceeee
Confidence             78999999999999999998876432 1112223678999999999 6   889999999999 99999987 455555


Q ss_pred             -EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee----------------------
Q 040307          251 -LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY----------------------  307 (339)
Q Consensus       251 -~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----------------------  307 (339)
                       +.+|...|.+++|+ ++ .+|++++.|+.|++||+..++             +....                      
T Consensus       236 ~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (450)
T 2vdu_B          236 WLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGK-------------NLSTFDYNSLIKPYLNDQHLAPPRFQN  300 (450)
T ss_dssp             ECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCC-------------EEEEEECHHHHGGGCCTTSBC------
T ss_pred             eecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCc-------------Eeeeecchhhhhhhhhhcccccccccc
Confidence             66899999999999 88 699999999999999998876             22111                      


Q ss_pred             ----cccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307          308 ----QSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       308 ----~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                          .....|.+++|+|+++++++++ .|+.|++|++
T Consensus       301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                2235699999999999888888 8999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-32  Score=230.87  Aligned_cols=266  Identities=10%  Similarity=0.018  Sum_probs=194.1

Q ss_pred             EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEE
Q 040307           23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRL  100 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~i  100 (339)
                      ..+.++   +.+|++|+    .||.|++|++.........    .   ...|.++.|+|       . +++++ | +|++
T Consensus        42 ~~~~~d---~~~l~sg~----~Dg~v~iwd~~~~~~~~~~----~---~~~v~~~~~~~-------~-~~s~s~D~~i~~   99 (343)
T 3lrv_A           42 KSMYYD---KWVCMCRC----EDGALHFTQLKDSKTITTI----T---TPNPRTGGEHP-------A-IISRGPCNRLLL   99 (343)
T ss_dssp             SSSSEE---EEEEEEEE----ETTEEEEEEESSSSCEEEE----E---EECCCTTCCCC-------S-EEEECSTTEEEE
T ss_pred             hhhcCC---CCEEEEEC----CCCcEEEEECCCCcEEEEE----e---cCCceeeeeCC-------c-eEEecCCCeEEE
Confidence            345567   88999999    7999999888754332222    1   35677777776       4 56665 5 8999


Q ss_pred             EeecCCc-------ceeEEEee-cCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCcee
Q 040307          101 WEIHDDR-------TELKSLLN-SNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVY  170 (339)
Q Consensus       101 w~~~~~~-------~~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~  170 (339)
                      |+.....       ...+..+. .|.     .+|.+++|+|. ++++|++++.||.|++||+++++...... .+...+.
T Consensus       100 w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~  174 (343)
T 3lrv_A          100 LYPGNQITILDSKTNKVLREIEVDSA-----NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS  174 (343)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCCS-----SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC
T ss_pred             EEccCceEEeecCCcceeEEeecCCC-----CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE
Confidence            9765321       11233333 444     78999999962 67899999999999999999998766553 4556899


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      +++|+ ++.+|++|+.|+.|++||+++++.....+.. .|..+|.+++|+| ++.+|++++ ++. |++||++.. +.+.
T Consensus       175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~-~g~~l~s~~-~~~-v~iwd~~~~-~~~~  249 (343)
T 3lrv_A          175 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFAD-NGYWMVVEC-DQT-VVCFDLRKD-VGTL  249 (343)
T ss_dssp             EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECT-TSSEEEEEE-SSB-EEEEETTSS-TTCB
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeC-CCCEEEEEe-CCe-EEEEEcCCC-Ccce
Confidence            99999 7999999999999999999998865222222 2678999999998 899999999 446 999999984 3333


Q ss_pred             EEe---cCCCCee--EEEeccCCCCeEEEEeC-CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC---
Q 040307          250 VLS---KHEGSVN--GISWAPLYGRRLCSVAD-DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP---  320 (339)
Q Consensus       250 ~~~---~~~~~v~--~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p---  320 (339)
                      .+.   .|...+.  +++|+|++ ++|++++. |+.++||++....            .....    .++..++|+|   
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~------------~~~~~----~~~~~~~~~~~~~  312 (343)
T 3lrv_A          250 AYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKT------------KNWTK----DEESALCLQSDTA  312 (343)
T ss_dssp             SSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTT------------CSEEE----EEEEECCC----C
T ss_pred             eecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccc------------cceEe----cCceeEecCcccc
Confidence            333   2444444  59999999 69999888 9999999997765            11211    5678888988   


Q ss_pred             CCCceEEEecCCeEEEE
Q 040307          321 LELDWIAIAFVNKLQLL  337 (339)
Q Consensus       321 ~~~~l~~~~~d~~v~~w  337 (339)
                      +...+++++.|+.++++
T Consensus       313 ~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          313 DFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CCCEEEEEEETTEEEEE
T ss_pred             ccceeEEEecCCceEEE
Confidence            77778888888888775

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-31  Score=222.26  Aligned_cols=249  Identities=16%  Similarity=0.252  Sum_probs=197.0

Q ss_pred             CCceeeee---eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307            7 KKPGVHTY---MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE   83 (339)
Q Consensus         7 ~~~~~~~~---~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~   83 (339)
                      +++.+..+   .|...|.+++|+|+   +++||+|+    .|+.|+||++...  +...  .+ .+|...+.++.+  ++
T Consensus        54 tg~~~~~~~~~~~~~~V~~v~~~~~---~~~l~sgs----~Dg~v~iw~~~~~--~~~~--~~-~~h~~~~~~~~~--~~  119 (318)
T 4ggc_A           54 SGDILQLLQMEQPGEYISSVAWIKE---GNYLAVGT----SSAEVQLWDVQQQ--KRLR--NM-TSHSARVGSLSW--NS  119 (318)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTT---SSEEEEEE----TTSEEEEEETTTT--EEEE--EE-ECCSSCEEEEEE--ET
T ss_pred             CCCEEEEEEecCCCCeEEEEEECCC---CCEEEEEE----CCCcEEEeecCCc--eeEE--Ee-cCccceEEEeec--CC
Confidence            34444444   35678999999999   99999999    7999999876643  3332  23 578887776655  45


Q ss_pred             CCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---
Q 040307           84 ETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL---  158 (339)
Q Consensus        84 ~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---  158 (339)
                           .++++++.  .+++|+..... .....+.+|.     ..+..+.+++ ++++|++++.|+.|++||+++++.   
T Consensus       120 -----~~l~s~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~  187 (318)
T 4ggc_A          120 -----YILSSGSRSGHIHHHDVRVAE-HHVATLSGHS-----QEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV  187 (318)
T ss_dssp             -----TEEEEEETTSEEEEEETTSSS-CEEEEEECCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSC
T ss_pred             -----CEEEEEecCCceEeeecCCCc-eeEEEEcCcc-----CceEEEEEcC-CCCEEEEEecCcceeEEECCCCccccc
Confidence                 68888874  88999887764 3666778887     8999999998 999999999999999999987653   


Q ss_pred             -eeeeeccCCceeEEEec-C-CcEE--EEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--e
Q 040307          159 -ETQLVAHDREVYDISWG-G-FNVF--ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--M  231 (339)
Q Consensus       159 -~~~~~~~~~~v~~~~~~-~-~~~l--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~  231 (339)
                       ......+...|.++.++ . .+.+  ++++.++.|++||.+.........    +...+..+.|+| .+..+++++  .
T Consensus       188 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~-~~~~~~~~sg~~  262 (318)
T 4ggc_A          188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSP-HYKELISGHGFA  262 (318)
T ss_dssp             CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEET-TTTEEEEEECTT
T ss_pred             ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecc-cccceEEEEEcC
Confidence             33445677889999998 3 4443  456678999999999887544433    346899999998 666665544  6


Q ss_pred             CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |+. |++||+++ .+++.++.+|.+.|++++|+|++ .+|++|+.||+|+|||+....
T Consensus       263 d~~-i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          263 QNQ-LVIWKYPT-MAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TCC-EEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCCC
T ss_pred             CCE-EEEEECCC-CcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence            787 99999987 77899999999999999999999 699999999999999997654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.4e-32  Score=229.17  Aligned_cols=230  Identities=11%  Similarity=0.062  Sum_probs=179.3

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE-EEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV-ATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d  145 (339)
                      ..|...|.+++|+|++     .+||+|++ .++||+++..+  .......       ..+..+++.+ +++.+ ++++.|
T Consensus        16 ~~h~~~V~~v~fs~dg-----~~la~g~~~~~~iw~~~~~~--~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~d   80 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQ-----SCLILSTLKSFEIYNVHPVA--HIMSQEM-------RHLSKVRMLH-RTNYVAFVTGVK   80 (355)
T ss_dssp             ---CCCCCEEEECTTS-----SEEEEECSSEEEEEEETTEE--EEEEEEC-------SCCCEEEECT-TSSEEEEECSST
T ss_pred             ccCCCceEEEEECCCC-----CEEEEEcCCEEEEEecCCcc--eeeeeec-------CCeEEEEEcC-CCCEEEEEECCc
Confidence            5789999999999999     89999987 89999988764  3332222       3466778886 56655 677888


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCC-cceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDK-ERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      ++|++||+.+++.+..+. +...|.++++++.. ++++ .|+.|++||+.+. +....+..      +...++++|   .
T Consensus        81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s~---~  148 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEFSN---G  148 (355)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEEET---T
T ss_pred             cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc------CCceEEEEc---c
Confidence            999999999999888886 67799999998443 4443 3789999999987 43333221      334566665   5


Q ss_pred             eEEE--EeeCCCeEEEEecCCCC--------------Cc-eEEEecCCCCeeEEEeccCCCCeEEEEeCCCc-EEEEEec
Q 040307          225 FMAT--VGMDSNKVVVLDIRFPT--------------NP-VVVLSKHEGSVNGISWAPLYGRRLCSVADDSR-ALIWEVV  286 (339)
Q Consensus       225 ~l~~--~~~d~~~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~iwd~~  286 (339)
                      ++++  |+.++. |++||++...              .+ +..+.+|...|.+++|+|++ .+|++++.|++ |+|||+.
T Consensus       149 ~la~~sg~~~g~-v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          149 LLVYSNEFNLGQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             EEEEEESSCTTC-EEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETT
T ss_pred             EEEEeCCCcCcE-EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECC
Confidence            6666  577888 9999998643              13 78899999999999999999 69999999998 9999999


Q ss_pred             CCCCCCCCCCCCCcccce-eee-c-ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          287 GPGYRSGNGGPSGDVEPE-LCY-Q-SMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~-~~~-~-~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +.+             +. ... + |...|++++|+|++++|++++.|++|++|++
T Consensus       227 ~~~-------------~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          227 DGV-------------LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             TCC-------------EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             CCc-------------EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            877             44 333 3 8999999999999999999999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-31  Score=233.49  Aligned_cols=232  Identities=15%  Similarity=0.289  Sum_probs=200.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..|...|.+++|  ++     ++|++|+ + .|++||+.+++  ....+.+|.     ..|.+++|   ++++|++|+.|
T Consensus       130 ~~~~~~v~~~~~--d~-----~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~-----~~v~~l~~---~~~~l~sg~~d  192 (435)
T 1p22_A          130 SETSKGVYCLQY--DD-----QKIVSGLRDNTIKIWDKNTLE--CKRILTGHT-----GSVLCLQY---DERVIITGSSD  192 (435)
T ss_dssp             CSSCCCEEEEEC--CS-----SEEEEEESSSCEEEEESSSCC--EEEEECCCS-----SCEEEEEC---CSSEEEEEETT
T ss_pred             cCCCCcEEEEEE--CC-----CEEEEEeCCCeEEEEeCCCCe--EEEEEcCCC-----CcEEEEEE---CCCEEEEEcCC
Confidence            356778998887  56     7888876 4 99999999887  778888888     89999998   56899999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      |.|++||+++++.+..+.+|...|.+++|+ ++.+++++.|+.|++||+++............|...+.+++|   ++++
T Consensus       193 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~  268 (435)
T 1p22_A          193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY  268 (435)
T ss_dssp             SCEEEEESSSCCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTE
T ss_pred             CeEEEEECCCCcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCE
Confidence            999999999999999999999999999998 569999999999999999988755433333447889999999   5689


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307          226 MATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL  305 (339)
Q Consensus       226 l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  305 (339)
                      +++++.|+. |++||++. .+++..+.+|...|.+++|+  + .+|++|+.||.|++||+..+.            ....
T Consensus       269 l~s~~~dg~-i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~------------~~~~  331 (435)
T 1p22_A          269 IVSASGDRT-IKVWNTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA------------CLRV  331 (435)
T ss_dssp             EEEEETTSE-EEEEETTT-CCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC------------EEEE
T ss_pred             EEEEeCCCe-EEEEECCc-CcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC------------EEEE
Confidence            999999998 99999987 67888999999999999994  4 599999999999999999877            2335


Q ss_pred             eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...|...|.+++|  ++..+++++.||.|++|++
T Consensus       332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence            5578999999999  6668889999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=236.33  Aligned_cols=272  Identities=11%  Similarity=0.033  Sum_probs=197.1

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|+..|++++|+|+   |      .     ++.+.+|+  .+.....     ...|...|.+++|||+|     ..||++
T Consensus        50 gh~~~v~~V~FsPd---g------~-----~~~~~~~~--~~~~~~~-----~~~~~~~V~~vawSPdG-----~~LAs~  103 (588)
T 2j04_A           50 CNSKNLFHVKEFPL---E------F-----ENKLDFEL--AQQNGLL-----NSQPVCYPRVCKPSPID-----DWMAVL  103 (588)
T ss_dssp             SBGGGTEEEEEECC---C------C-----CCTTTTSC--CCSSCSS-----TTSCSCCEEEEEECSSS-----SCEEEE
T ss_pred             CCCccEEEEEECCC---C------C-----cceEEEEe--CCCceEe-----ecCCCCcEEEEEECCCC-----CEEEEE
Confidence            57889999999999   7      3     66766633  2222222     24668899999999999     888888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-------eeee---
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-------ETQL---  162 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------~~~~---  162 (339)
                      + + .|++|+.+.    ++..+. |........|.+++||| ++++|++|+.||+|++||+.++..       +.++   
T Consensus       104 s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~  177 (588)
T 2j04_A          104 SNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS  177 (588)
T ss_dssp             ETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS
T ss_pred             eCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc
Confidence            7 4 999999543    555566 54111113599999999 999999999999999999988752       4565   


Q ss_pred             -eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCccee--eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307          163 -VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERST--IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL  239 (339)
Q Consensus       163 -~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~  239 (339)
                       .+|.+.|.+++|+|+. +++++.|+.|++||+.+.....  .... ..|...|.+++|+   ++.||+++ ++. |++|
T Consensus       178 ~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs---g~~LASa~-~~t-IkLW  250 (588)
T 2j04_A          178 DAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV---DYKVVLTC-PGY-VHKI  250 (588)
T ss_dssp             CTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE---TTEEEEEC-SSE-EEEE
T ss_pred             cccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE---CCEEEEEe-CCe-EEEE
Confidence             5677899999999544 8999999999999998877421  1221 1366899999998   48888887 576 9999


Q ss_pred             ecCCCCCceEEEecCCCCeeEEEe--ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC-----------Ccccceee
Q 040307          240 DIRFPTNPVVVLSKHEGSVNGISW--APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS-----------GDVEPELC  306 (339)
Q Consensus       240 d~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~~~~~~~  306 (339)
                      |+.. .+......+|...|..++|  +|++ ..|+++++||+ ++|....-...|. ....           ....++..
T Consensus       251 d~~~-~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd-~~l~a~~d~~v~lW~~~g~~l~~  326 (588)
T 2j04_A          251 DLKN-YSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTAD-NIIAPYLEKKFKKWSTIWNEFNN  326 (588)
T ss_dssp             ETTT-TEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECC-CSSHHHHHHHHHHTTTTTTSSSS
T ss_pred             ECCC-CeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCC-ceEEEEcCCEEEEEECCCCceee
Confidence            9986 4332333389999999999  9999 69999999999 9999742110000 0000           00011223


Q ss_pred             ecccceeEEEEecCCCCceEEEe
Q 040307          307 YQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       307 ~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      ..+...|++++|+|+|+.+++++
T Consensus       327 ~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          327 YETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             SCCEEEEEEEEECTTSSEEEEEE
T ss_pred             eccceEEEEEEECCCCCEEEEEE
Confidence            33456799999999998666554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.8e-32  Score=234.52  Aligned_cols=237  Identities=13%  Similarity=0.080  Sum_probs=169.9

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--------CCCCCCCCeEEEeC-C-cEEEE
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--------SEETLNPDIVATSG-D-SLRLW  101 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--------~~~~~~~~~la~~~-~-~i~iw  101 (339)
                      +.+||+|+    .|++|+||+.+..............+|.+.|++++|+|        ++     ++||+++ | +|+||
T Consensus       101 ~~~las~~----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-----~~las~s~D~tv~~W  171 (393)
T 4gq1_A          101 SLFLACVC----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-----QVIASVGDDCTLIIW  171 (393)
T ss_dssp             EEEEEEEE----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-----EEEEEEETTSEEEEE
T ss_pred             CCEEEEEe----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-----CEEEEEECCCeEEEE
Confidence            77899999    79999998877543322211111258999999999998        66     8999998 4 99999


Q ss_pred             eecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee--------------------
Q 040307          102 EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ--------------------  161 (339)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--------------------  161 (339)
                      |+.++.  +...+..|.     .++.+++|+|.+..+|++++.|++|++||+++++....                    
T Consensus       172 d~~~~~--~~~~~~~~~-----~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          172 RLTDEG--PILAGYPLS-----SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             EEETTE--EEEEEEECS-----SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             ECCCCc--eeeeecCCC-----CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            998876  666666776     89999999994446899999999999999987653221                    


Q ss_pred             -----eeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---------------CCCCCeEEEEEe
Q 040307          162 -----LVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENP---------------VQDCPLLRLEWN  219 (339)
Q Consensus       162 -----~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~~~~v~~~~~~  219 (339)
                           ..+|...+.++.|+  ++..|++++.|+.+++||+...+....+....               ..........|+
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                 13577788999997  68999999999999999998765332221100               001112233444


Q ss_pred             cCC-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          220 KAD-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       220 p~~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      |.. +.++++|+.|+. |++||+.. +.+...+..|..+|++++|+|+| ++||+++.+| +.+|.+...
T Consensus       325 ~~~~~~~~~sgs~Dg~-V~lwd~~~-~~~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL~gf  390 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGL-IQLINTYE-KDSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRLMGF  390 (393)
T ss_dssp             SSCTTEEEEEETTTTE-EEEEETTC-TTCCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEEGGG
T ss_pred             cCCCCEEEEEECCCCE-EEEEECCC-CcEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEEeCc
Confidence            433 445666778888 99999987 55677778889999999999999 6999998665 677776543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=222.41  Aligned_cols=242  Identities=12%  Similarity=0.200  Sum_probs=191.8

Q ss_pred             ecCCCCceEEEEcCC---CCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           68 FDHPYTPTNIAFFPS---EETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~---~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .+|.+.|++++|+|+   +     .+|++++ + .|++|++.+........+.+|.     ..|++++|+| ++++|+++
T Consensus        36 ~~h~~~v~~~~~~~~~~~g-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~  104 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPG-----NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT-----GPVLDVCWSD-DGSKVFTA  104 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSS-----EEEEEEETTSEEEEEEECTTSCEEEEEEEECS-----SCEEEEEECT-TSSEEEEE
T ss_pred             cCCCCceEEEEEcCCCCCc-----eEEEEECCCCcEEEEEcCCCCceeEEEecccc-----CCEEEEEECc-CCCEEEEE
Confidence            689999999999999   5     7888877 4 9999999974433447788888     8999999998 99999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEe--c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISW--G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~--~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      +.||.|++||+++++.+. +..|...|.+++|  + ++++|++++.|+.|++||+++.+....+...    ..+.++.+.
T Consensus       105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~  179 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----ERCYCADVI  179 (368)
T ss_dssp             ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS----SCEEEEEEE
T ss_pred             cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC----CCceEEEec
Confidence            999999999999988666 4569999999999  6 6789999999999999999998755544332    467777776


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCC---CeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYG---RRLCSVADDSRALIWEVVGPGYRSGNG  295 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~  295 (339)
                      +   ..+++++.++. +.+|+++.......... .+...+..+.+.++..   ..+++++.||.|++|++....      
T Consensus       180 ~---~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~------  249 (368)
T 3mmy_A          180 Y---PMAVVATAERG-LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN------  249 (368)
T ss_dssp             T---TEEEEEEGGGC-EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC------
T ss_pred             C---CeeEEEeCCCc-EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC------
Confidence            4   57888888988 99999987443333332 2334566677666542   129999999999999998875      


Q ss_pred             CCCCc-ccceeeecccc------------eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          296 GPSGD-VEPELCYQSMA------------EINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       296 ~~~~~-~~~~~~~~~~~------------~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                          . ........|..            .|++++|+|++++|++++.|+.|++|++
T Consensus       250 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          250 ----PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             ----HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ----ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence                1 01123334443            7999999999999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=226.61  Aligned_cols=228  Identities=9%  Similarity=0.045  Sum_probs=176.0

Q ss_pred             EEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-
Q 040307           78 AFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-  154 (339)
Q Consensus        78 ~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-  154 (339)
                      .+.+++     .+|++|+ | .|++||+.+++  .+..+..       ..|.++.|+| +   +++++.|++|++|+.. 
T Consensus        43 ~~~~d~-----~~l~sg~~Dg~v~iwd~~~~~--~~~~~~~-------~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~  104 (343)
T 3lrv_A           43 SMYYDK-----WVCMCRCEDGALHFTQLKDSK--TITTITT-------PNPRTGGEHP-A---IISRGPCNRLLLLYPGN  104 (343)
T ss_dssp             SSSEEE-----EEEEEEEETTEEEEEEESSSS--CEEEEEE-------ECCCTTCCCC-S---EEEECSTTEEEEEETTT
T ss_pred             hhcCCC-----CEEEEECCCCcEEEEECCCCc--EEEEEec-------CCceeeeeCC-c---eEEecCCCeEEEEEccC
Confidence            344566     7888887 5 99999999887  5555552       5788888987 4   9999999999999765 


Q ss_pred             --------CCeeeeeee-ccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          155 --------REILETQLV-AHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       155 --------~~~~~~~~~-~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                              +++.+..+. .|...|.+++|++   +++|++++.|+.|++||+++++.......  .+...+.+++|+| +
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~~p-d  181 (343)
T 3lrv_A          105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHK-D  181 (343)
T ss_dssp             EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC--CSSCCCCEEEECT-T
T ss_pred             ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec--CCCCceEEEEECC-C
Confidence                    444344443 5668899999985   67999999999999999998875333222  2456799999998 9


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      +.+|++|+.|+. |++||++........+.. |...|.+++|+|++ .+|++++ |+.|++||++...          ..
T Consensus       182 g~~lasg~~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~----------~~  248 (343)
T 3lrv_A          182 SLLLALYSPDGI-LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDV----------GT  248 (343)
T ss_dssp             SCEEEEECTTSC-EEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSST----------TC
T ss_pred             CCEEEEEcCCCE-EEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCC----------cc
Confidence            999999999999 999999985444377888 99999999999999 6999999 5599999999876          00


Q ss_pred             ccee-eeccccee--EEEEecCCCCceEEEec-CCeEEEEeC
Q 040307          302 EPEL-CYQSMAEI--NVVRWSPLELDWIAIAF-VNKLQLLKV  339 (339)
Q Consensus       302 ~~~~-~~~~~~~i--~~~~~~p~~~~l~~~~~-d~~v~~w~v  339 (339)
                      ..+. ...|...+  .+++|+|+++++++++. |+.+++|++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            0111 11133333  46999999998888887 999999963

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.3e-30  Score=209.70  Aligned_cols=281  Identities=10%  Similarity=0.096  Sum_probs=190.8

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-CC-c
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-GD-S   97 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~~-~   97 (339)
                      +.++-|-...-....+++++     ...|++|+.... ...+..... ..|+.+|..+.|.|+..    .++..+ ++ .
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-----~~~v~lw~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~~~~~~~~~~  110 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-----EDVVSLWKALDA-WQWEKLYTW-HFAEVPVLQIVPVPDVY----NLVCVALGNLE  110 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-----SSEEEEEEESSS-SBEEEEEEE-ECCSSCEEEECCCTTCC----SCEEEEECSSS
T ss_pred             EeeeeeccCCCCccEEEEec-----cceEEEcccCCC-ccceeeEEE-eccCceeEEEEEcCccc----ceeeeeecccc
Confidence            44555555411123667777     899999887663 444443355 67889999999999885    454444 33 2


Q ss_pred             E-EEEee----cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe--CCCeEEEEEC-CCCeeeeeeeccCCce
Q 040307           98 L-RLWEI----HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS--VDTTCVIWDI-DREILETQLVAHDREV  169 (339)
Q Consensus        98 i-~iw~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~-~~~~~~~~~~~~~~~v  169 (339)
                      + .++.+    ++........-.+|.     ..|..+   + +++++.+++  .|+.|++|++ .+++.+..+..|...+
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~-----~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v  181 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNI-----KAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE  181 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEE-----EEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred             ccceEEEEECCCccccccEEEeCCCe-----EEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence            2 22222    211112222223443     445544   3 677777644  6999999999 5588888888999999


Q ss_pred             eEEEec----CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE------------EEEeeCC
Q 040307          170 YDISWG----GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM------------ATVGMDS  233 (339)
Q Consensus       170 ~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l------------~~~~~d~  233 (339)
                      +.++|+    ++.+|++++.|++|+|||+++++....+.....+...+.+++|+| ++.++            ++|+.|+
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCc
Confidence            988888    358999999999999999999986666543322345678889999 78776            5577788


Q ss_pred             CeEEEEecCCCCCceEEE-----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eee
Q 040307          234 NKVVVLDIRFPTNPVVVL-----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY  307 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~  307 (339)
                      . |++||..+ ++.+..+     .+|...+.+..++  + .++++++.|++|+|||+.+++             .. .+.
T Consensus       261 t-IklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk-------------~l~tL~  322 (356)
T 2w18_A          261 Q-LIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ-------------CTALLP  322 (356)
T ss_dssp             E-EEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS-------------EEEEEC
T ss_pred             E-EEEEECCC-CEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc-------------EEEEec
Confidence            7 99999986 5544443     3565555444444  5 589999999999999999987             44 344


Q ss_pred             cccceeE-EEEecCCCCceEEEecCCeEEEEeC
Q 040307          308 QSMAEIN-VVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       308 ~~~~~i~-~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|...+. .++|+|+|++|++++.|++|+||++
T Consensus       323 gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          323 PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            6766554 6999999999999999999999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.1e-29  Score=218.33  Aligned_cols=261  Identities=11%  Similarity=0.096  Sum_probs=199.5

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeecCCcc
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIHDDRT  108 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~~~~~  108 (339)
                      +.++++++    .++.|++|++..  ++...    ...+...+.+++|+|++     +.+ ++++ + .|++||+.+++ 
T Consensus         2 ~~l~vs~~----~d~~v~v~d~~~--~~~~~----~~~~~~~~~~~~~s~dg-----~~l~~~~~~d~~i~v~d~~~~~-   65 (391)
T 1l0q_A            2 TFAYIANS----ESDNISVIDVTS--NKVTA----TIPVGSNPMGAVISPDG-----TKVYVANAHSNDVSIIDTATNN-   65 (391)
T ss_dssp             EEEEEEET----TTTEEEEEETTT--TEEEE----EEECSSSEEEEEECTTS-----SEEEEEEGGGTEEEEEETTTTE-
T ss_pred             CEEEEEcC----CCCEEEEEECCC--CeEEE----EeecCCCcceEEECCCC-----CEEEEECCCCCeEEEEECCCCe-
Confidence            44677777    799999977653  33332    23444568999999999     654 6664 4 99999998886 


Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEE-EEEeC
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVF-ASVSG  185 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~  185 (339)
                       ....+..+      ..+.+++|+| ++++|+ +++.++.|++||+.+++.+..+.. ...+.+++|+ +++.+ ++++.
T Consensus        66 -~~~~~~~~------~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           66 -VIATVPAG------SSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             -EEEEEECS------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT
T ss_pred             -EEEEEECC------CCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCC
Confidence             66666654      4899999998 888775 455679999999999988887764 4578999999 67766 78888


Q ss_pred             CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE-EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307          186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM-ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA  264 (339)
Q Consensus       186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  264 (339)
                      ++.|++||+++++....+..    ...+..++|+| +++.+ ++++.++. |++||++. .+.+..+. +...+.+++|+
T Consensus       137 ~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~-dg~~l~~~~~~~~~-v~~~d~~~-~~~~~~~~-~~~~~~~~~~~  208 (391)
T 1l0q_A          137 DKTVSVINTVTKAVINTVSV----GRSPKGIAVTP-DGTKVYVANFDSMS-ISVIDTVT-NSVIDTVK-VEAAPSGIAVN  208 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEEC----CSSEEEEEECT-TSSEEEEEETTTTE-EEEEETTT-TEEEEEEE-CSSEEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEEec----CCCcceEEECC-CCCEEEEEeCCCCE-EEEEECCC-CeEEEEEe-cCCCccceEEC
Confidence            99999999998875444332    24679999998 77766 56666777 99999987 44455554 56689999999


Q ss_pred             cCCCCeEEEEe---CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307          265 PLYGRRLCSVA---DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV  339 (339)
Q Consensus       265 p~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v  339 (339)
                      |++ .+|++++   .++.|++||+...+             +.........+.+++|+|+++.++ +++.|+.|++|++
T Consensus       209 ~~g-~~l~~~~~~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          209 PEG-TKAYVTNVDKYFNTVSMIDTGTNK-------------ITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             TTS-SEEEEEEECSSCCEEEEEETTTTE-------------EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCC-CEEEEEecCcCCCcEEEEECCCCe-------------EEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            999 4777776   68999999998876             443343344689999999998775 5578999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.8e-30  Score=224.25  Aligned_cols=285  Identities=9%  Similarity=0.025  Sum_probs=214.6

Q ss_pred             ccCCeeEEE---eeecCCcccEEEEeeec----------cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC
Q 040307           16 AQWPISTVA---WSVRHDRKSRLAVGSFL----------EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS   82 (339)
Q Consensus        16 ~~~~v~~i~---~sp~~~~~~~la~g~~~----------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~   82 (339)
                      ....+..++   |+|+   +..+++.+..          +..++.+.||.++..+......  ........+.+++|+|+
T Consensus        59 ~~~g~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~s~~  133 (433)
T 3bws_A           59 KNIALVEMAIPVYKDE---KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFI--SRFKTGFQPKSVRFIDN  133 (433)
T ss_dssp             TTEEEEEEEEECCCTT---CCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEE--EEEECSSCBCCCEESSS
T ss_pred             cCCccEEEEEeeccCC---CcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEE--EEEcCCCCceEEEEeCC
Confidence            345678888   8988   6655543320          1134445677777655433331  12344556779999996


Q ss_pred             CCCCCCCeEEEeCC--cEEEEeecCCcceeEE-----EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 040307           83 EETLNPDIVATSGD--SLRLWEIHDDRTELKS-----LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR  155 (339)
Q Consensus        83 ~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~  155 (339)
                      +     .+++++++  .|++||+.+++  ...     .+.+|.     ..|.+++|+| ++.++++++.|+.|++||+++
T Consensus       134 ~-----~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          134 T-----RLAIPLLEDEGMDVLDINSGQ--TVRLSPPEKYKKKL-----GFVETISIPE-HNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             S-----EEEEEBTTSSSEEEEETTTCC--EEEECCCHHHHTTC-----CEEEEEEEGG-GTEEEEEEGGGTEEEEEETTT
T ss_pred             C-----eEEEEeCCCCeEEEEECCCCe--EeeecCcccccccC-----CceeEEEEcC-CCEEEEEECCCCEEEEEECCC
Confidence            6     77777764  89999999887  444     233454     7899999987 899999999999999999999


Q ss_pred             CeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee--
Q 040307          156 EILETQLVAHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM--  231 (339)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--  231 (339)
                      ++.+..+..|...+.+++|+ +++.++ +++.|+.|++||+++++....+.    ....+.+++|+| +++++++++.  
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~  275 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRGLLLSK-DGKELYIAQFSA  275 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEEEEECT-TSSEEEEEEEES
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceEEEEcC-CCCEEEEEECCC
Confidence            99888888899999999999 666664 55589999999999876433322    234689999998 8888888874  


Q ss_pred             ------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307          232 ------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL  305 (339)
Q Consensus       232 ------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  305 (339)
                            ++. |++||++. .+.+..+ .|...+.+++|+|+++.++++++.|+.|++||+...+             ...
T Consensus       276 ~~~~~~dg~-i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-------------~~~  339 (433)
T 3bws_A          276 SNQESGGGR-LGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-------------VQK  339 (433)
T ss_dssp             CTTCSCCEE-EEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-------------EEE
T ss_pred             CccccCCCe-EEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-------------EEE
Confidence                  566 99999986 4444443 4566899999999996566777899999999998766             444


Q ss_pred             eecccceeEEEEecCCCCceEEEec---------------CCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIAF---------------VNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~~---------------d~~v~~w~v  339 (339)
                      ...+...+.+++|+|+++.+++++.               ||.|++|++
T Consensus       340 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          340 SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            5567788999999999988877765               569999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.7e-28  Score=210.88  Aligned_cols=247  Identities=11%  Similarity=0.080  Sum_probs=192.4

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEE-EEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRL-AVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~l-a~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++.+..+.+...+.+++|+|+   +++| ++++    .++.|++|+..  +++...    ...+...+.+++|+|++  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~----~d~~i~v~d~~--~~~~~~----~~~~~~~v~~~~~spdg--   85 (391)
T 1l0q_A           21 SNKVTATIPVGSNPMGAVISPD---GTKVYVANA----HSNDVSIIDTA--TNNVIA----TVPAGSSPQGVAVSPDG--   85 (391)
T ss_dssp             TTEEEEEEECSSSEEEEEECTT---SSEEEEEEG----GGTEEEEEETT--TTEEEE----EEECSSSEEEEEECTTS--
T ss_pred             CCeEEEEeecCCCcceEEECCC---CCEEEEECC----CCCeEEEEECC--CCeEEE----EEECCCCccceEECCCC--
Confidence            4566677777778999999999   8876 5665    69999997764  334333    23444589999999999  


Q ss_pred             CCCCeE-EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeee
Q 040307           86 LNPDIV-ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        86 ~~~~~l-a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                         +.| ++++ + .|++||+.+++  ....+..+      ..+.+++|+| +++.| ++++.++.|++||+.+++.+..
T Consensus        86 ---~~l~~~~~~~~~v~v~d~~~~~--~~~~~~~~------~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           86 ---KQVYVTNMASSTLSVIDTTSNT--VAGTVKTG------KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             ---SEEEEEETTTTEEEEEETTTTE--EEEEEECS------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ---CEEEEEECCCCEEEEEECCCCe--EEEEEeCC------CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence               655 5554 3 99999999886  55566554      4689999998 88866 7888899999999999998888


Q ss_pred             eeccCCceeEEEec-CCcEE-EEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe---eCCCeE
Q 040307          162 LVAHDREVYDISWG-GFNVF-ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG---MDSNKV  236 (339)
Q Consensus       162 ~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~d~~~i  236 (339)
                      +..+ ..+.+++|+ +++.+ ++++.++.|++||+++.+....+.    +...+.+++|+| ++++|++++   .++. |
T Consensus       154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~~~-v  226 (391)
T 1l0q_A          154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNP-EGTKAYVTNVDKYFNT-V  226 (391)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECT-TSSEEEEEEECSSCCE-E
T ss_pred             EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECC-CCCEEEEEecCcCCCc-E
Confidence            8655 457999999 66666 677889999999999887544432    235789999998 888888887   4666 9


Q ss_pred             EEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++||++. .+++..+..|. .+.+++|+|++..++++++.|+.|++||+...+
T Consensus       227 ~~~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          227 SMIDTGT-NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEEETTT-TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEECCC-CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            9999987 55677777654 578999999995344777899999999998765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=7.9e-29  Score=202.29  Aligned_cols=253  Identities=12%  Similarity=0.105  Sum_probs=174.6

Q ss_pred             ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      +.+++.. ++.+|..+.+.||   ..-|++.....-+.+.|+..-+..++..+... ....+|...|..+   +++    
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~-l~s~g~~~~v~~l---~~g----  145 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPD---VYNLVCVALGNLEIREIRALFCSSDDESEKQV-LLKSGNIKAVLGL---TKR----  145 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTT---CCSCEEEEECSSSEEEEEEECC------CCEE-EEEEEEEEEEEEE---TTT----
T ss_pred             eeeEEEeccCceeEEEEEcCc---ccceeeeeeccccccceEEEEECCCccccccE-EEeCCCeEEEEec---CCC----
Confidence            5566665 4569999999998   43333333211133344443344443222221 1123455556554   566    


Q ss_pred             CCeEEEeC---C-cEEEEeecC-CcceeEEEeecCCCccCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCeeee
Q 040307           88 PDIVATSG---D-SLRLWEIHD-DRTELKSLLNSNKTSEFSSAITSFDWAGF--DTRRVATCSVDTTCVIWDIDREILET  160 (339)
Q Consensus        88 ~~~la~~~---~-~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~  160 (339)
                       +++.+++   + .|++|++.. ++  .+..+..|.     ..++.++|+|.  ++.+|++++.|++|+|||++++++++
T Consensus       146 -~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~~~~~-----~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~  217 (356)
T 2w18_A          146 -RLVSSSGTLSDQQVEVMTFAEDGG--GKENQFLMP-----PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLK  217 (356)
T ss_dssp             -EEEEEESSSTTCEEEEEEECTTSC--EEEEEEECC-----CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             -cEEEecccCCCCcEEEEEECCCCc--eeeeeccCC-----CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEE
Confidence             7888754   5 999999954 54  666777777     77888888863  67999999999999999999999999


Q ss_pred             eeeccC---CceeEEEec-CCcEE------------EEEeCCCcEEEEECCCCcceeeEEe--CCCCCCCeEEEEEecCC
Q 040307          161 QLVAHD---REVYDISWG-GFNVF------------ASVSGDCSVRVFDLRDKERSTIIYE--NPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       161 ~~~~~~---~~v~~~~~~-~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~  222 (339)
                      ++.+|.   ..+.+++|+ ++.++            ++|+.|++|++||..+++....+..  ...|...+.+..+   +
T Consensus       218 tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---s  294 (356)
T 2w18_A          218 KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---K  294 (356)
T ss_dssp             EEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---E
T ss_pred             EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---C
Confidence            997654   357777899 67665            6688899999999998875443321  1234444544444   3


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCee-EEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN-GISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      +.++++++.|++ |+|||+.+ ++.+.++.+|...+. .++|+|++ ++|++|+.|++|+|||+.
T Consensus       295 g~~lASgS~DgT-IkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          295 DHCAAAILTSGT-IAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TTEEEEEETTSC-EEEEETTT-CSEEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEEC
T ss_pred             CCEEEEEcCCCc-EEEEECCC-CcEEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecCC
Confidence            788999999999 99999998 778899999987665 58999999 699999999999999963

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=9.5e-28  Score=207.55  Aligned_cols=283  Identities=13%  Similarity=0.098  Sum_probs=203.9

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCC----eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC-----------
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSN----KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS-----------   82 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------   82 (339)
                      ..+...+|++.  ..+++++|+.....+|    .++|||....+++......+ ..|...+..+++++.           
T Consensus        63 ~~~~~~~w~~~--g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           63 QEVQPAAWSAL--GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             GGCCHHHHHTT--TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCcCHHHHHhc--CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            46777888888  2356768764323467    89998872122333221133 577778888877751           


Q ss_pred             ---CCCCCCCeEEEeC-------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---eEE
Q 040307           83 ---EETLNPDIVATSG-------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT---TCV  149 (339)
Q Consensus        83 ---~~~~~~~~la~~~-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~v~  149 (339)
                         +.    +++.++.       ..|++||++..   ....+..|.     ..+.+++|+| +++.|++++.++   .|+
T Consensus       140 ~~~~~----~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~-----~~v~~~~~Sp-dg~~la~~s~~~~~~~i~  206 (415)
T 2hqs_A          140 GAFRT----RIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSP-----QPLMSPAWSP-DGSKLAYVTFESGRSALV  206 (415)
T ss_dssp             CCTTC----EEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEES-----SCEEEEEECT-TSSEEEEEECTTSSCEEE
T ss_pred             CcCCC----EEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCC-----CcceeeEEcC-CCCEEEEEEecCCCcEEE
Confidence               31    4444432       28999999764   345566666     7899999999 999999999885   999


Q ss_pred             EEECCCCeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          150 IWDIDREILETQLVAHDREVYDISWG-GFNVFA-SVSGDCS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       150 i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      +||+++++.. .+..|...+.+++|+ +++.|+ +++.++.  |++||+++++.. . .  ..+...+.+++|+| +++.
T Consensus       207 ~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~-l--~~~~~~~~~~~~sp-dg~~  280 (415)
T 2hqs_A          207 IQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q-V--TDGRSNNTEPTWFP-DSQN  280 (415)
T ss_dssp             EEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E-C--CCCSSCEEEEEECT-TSSE
T ss_pred             EEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e-C--cCCCCcccceEECC-CCCE
Confidence            9999988765 456788899999999 788777 6666655  999999887632 2 2  22557899999999 8888


Q ss_pred             EEEEeeC-CC-eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC---CcEEEEEecCCCCCCCCCCCCCc
Q 040307          226 MATVGMD-SN-KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD---SRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       226 l~~~~~d-~~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      |++++.+ +. .|++||+.. ++ ...+..+...+.+++|+|+| ++|++++.+   ..|++||+....           
T Consensus       281 l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~-----------  346 (415)
T 2hqs_A          281 LAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG-----------  346 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC-----------
T ss_pred             EEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC-----------
Confidence            8887764 32 377778875 33 45566677889999999999 577777654   589999998876           


Q ss_pred             ccceeeecccceeEEEEecCCCCceEEEecCC---eEEEEeC
Q 040307          301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVN---KLQLLKV  339 (339)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~---~v~~w~v  339 (339)
                        ......+. .+.+++|+|+|+.|+.++.++   .|++|++
T Consensus       347 --~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          347 --VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             --EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             --EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence              33333443 899999999999888877666   6888864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=8e-26  Score=201.36  Aligned_cols=301  Identities=9%  Similarity=0.023  Sum_probs=218.6

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC----C
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP----S   82 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~   82 (339)
                      +++.+.++.....+..++|+|+   +++|++++    .++.|.+|+++..+.....  .  ..+...+..++|+|    +
T Consensus       168 t~~~~~~i~~g~~~~~v~~spd---g~~l~v~~----~d~~V~v~D~~~~t~~~~~--~--i~~g~~p~~va~sp~~~~d  236 (543)
T 1nir_A          168 SKKIVKVIDTGYAVHISRMSAS---GRYLLVIG----RDARIDMIDLWAKEPTKVA--E--IKIGIEARSVESSKFKGYE  236 (543)
T ss_dssp             TCCEEEEEECSTTEEEEEECTT---SCEEEEEE----TTSEEEEEETTSSSCEEEE--E--EECCSEEEEEEECCSTTCT
T ss_pred             CceEEEEEecCcccceEEECCC---CCEEEEEC----CCCeEEEEECcCCCCcEEE--E--EecCCCcceEEeCCCcCCC
Confidence            4556666665555899999999   99999999    6899999888433444433  2  34566789999999    9


Q ss_pred             CCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCCC--c----cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307           83 EETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNKT--S----EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI  153 (339)
Q Consensus        83 ~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~--~----~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~  153 (339)
                      +     ++|++++  + +|.+||..+.+  ++..+..+..  .    .....+..+.++|....++++...++.|.+||.
T Consensus       237 g-----~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~  309 (543)
T 1nir_A          237 D-----RYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  309 (543)
T ss_dssp             T-----TEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             C-----CEEEEEEccCCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence            9     7777765  4 99999998877  5555543210  0    001368899999855567777888999999999


Q ss_pred             CCCeeee--eeeccCCceeEEEec-CCcEEEEE-eCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEE
Q 040307          154 DREILET--QLVAHDREVYDISWG-GFNVFASV-SGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       154 ~~~~~~~--~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      .+.+.+.  .+ .+...+.++.|+ ++++|+++ ..+++|.+||+.+++....+.... .|......+ ++|..+.++++
T Consensus       310 ~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s  387 (543)
T 1nir_A          310 KDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST  387 (543)
T ss_dssp             TTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred             cCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence            8866443  44 356678899999 77766655 468999999999987555443221 133333333 46745777777


Q ss_pred             Ee-eCCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCCCCeEEEEe-------CCCcEEEEEecCCCCCCCC
Q 040307          229 VG-MDSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-------DDSRALIWEVVGPGYRSGN  294 (339)
Q Consensus       229 ~~-~d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~  294 (339)
                      +. .++. |.+||+...      .+.+.++..|...+..++++|++ +.|++++       .+++|.+||+.+.+     
T Consensus       388 ~~~~d~~-V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~-----  460 (543)
T 1nir_A          388 SHLGDGS-ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD-----  460 (543)
T ss_dssp             EBSSSSE-EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTT-----
T ss_pred             ccCCCce-EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCC-----
Confidence            65 4566 999999762      46788999998889999999999 5888887       26799999999887     


Q ss_pred             CCCCCcc-ccee------eecccceeEEEEecCCCCceEEEe-----cCCeEEEEeC
Q 040307          295 GGPSGDV-EPEL------CYQSMAEINVVRWSPLELDWIAIA-----FVNKLQLLKV  339 (339)
Q Consensus       295 ~~~~~~~-~~~~------~~~~~~~i~~~~~~p~~~~l~~~~-----~d~~v~~w~v  339 (339)
                           .. +.+.      +..+...+..+.|+|+|+.++.+.     .++.|.||+.
T Consensus       461 -----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          461 -----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             -----SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             -----CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence                 11 1110      124567899999999999877553     3799999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=1.3e-25  Score=189.20  Aligned_cols=267  Identities=12%  Similarity=0.079  Sum_probs=181.6

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C--cEEEEeec--CCcceeEEEeecCC
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D--SLRLWEIH--DDRTELKSLLNSNK  118 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~--~i~iw~~~--~~~~~~~~~~~~~~  118 (339)
                      .++.|++|+++.. +....  .....+...+.+++|+|++     ++|++++ +  .|.+|+++  +++...+..+..+ 
T Consensus        13 ~~~~v~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-   83 (343)
T 1ri6_A           13 ESQQIHVWNLNHE-GALTL--TQVVDVPGQVQPMVVSPDK-----RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-   83 (343)
T ss_dssp             GGTEEEEEEECTT-SCEEE--EEEEECSSCCCCEEECTTS-----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred             CCCeEEEEEECCC-CcEEE--eeeEecCCCCceEEECCCC-----CEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence            6999999998752 32222  1225677889999999999     6555554 3  99999998  5554444455443 


Q ss_pred             CccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECC---CCeeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEE
Q 040307          119 TSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDID---REILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVF  192 (339)
Q Consensus       119 ~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~---~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~  192 (339)
                           ..+..++|+| ++++|++++. ++.|.+||+.   ..+....+.. ...+.+++|+ +++.+++++ .++.|.+|
T Consensus        84 -----~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  156 (343)
T 1ri6_A           84 -----GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLF  156 (343)
T ss_dssp             -----SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             -----CCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence                 3678999998 8887766654 8899999994   3344444443 3458899999 677777776 89999999


Q ss_pred             ECCC-Ccceee---EEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCCeEEEEecCCC-CCc--eEEEec----C--CCCe
Q 040307          193 DLRD-KERSTI---IYENPVQDCPLLRLEWNKADPRFMATVG-MDSNKVVVLDIRFP-TNP--VVVLSK----H--EGSV  258 (339)
Q Consensus       193 d~~~-~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~~i~i~d~~~~-~~~--~~~~~~----~--~~~v  258 (339)
                      |+.. ++....   .... .....+..++|+| +++++++++ .++. |.+||+... +..  ......    +  ...+
T Consensus       157 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-dg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  233 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHP-NEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWA  233 (343)
T ss_dssp             EECTTSCEEEEEEEEEEC-STTCCEEEEEECT-TSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             EecCCCceeeeccccccc-CCCCCcceEEECC-CCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCc
Confidence            9987 432211   1121 1235788999998 788666555 5666 999999642 222  222221    1  2356


Q ss_pred             eEEEeccCCCCeEE-EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe-cCCeEEE
Q 040307          259 NGISWAPLYGRRLC-SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQL  336 (339)
Q Consensus       259 ~~~~~~p~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~  336 (339)
                      ..++|+|++. +|+ ++..++.|.+||+....         ..............+..++|+|+++.+++++ .++.+.+
T Consensus       234 ~~i~~s~dg~-~l~v~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          234 ADIHITPDGR-HLYACDRTASLITVFSVSEDG---------SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  303 (343)
T ss_dssp             EEEEECTTSS-EEEEEETTTTEEEEEEECTTS---------CCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             cceEECCCCC-EEEEEecCCCEEEEEEEcCCC---------CceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEE
Confidence            6899999995 555 56689999999998422         0012222233333488999999999888777 6899999


Q ss_pred             EeC
Q 040307          337 LKV  339 (339)
Q Consensus       337 w~v  339 (339)
                      |++
T Consensus       304 ~~~  306 (343)
T 1ri6_A          304 YEI  306 (343)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            953

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=6.7e-25  Score=185.72  Aligned_cols=288  Identities=9%  Similarity=0.036  Sum_probs=206.5

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeecc---ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLE---DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      .+........+..++|+|+   +++|++++..+   ..++.|.+|+  ..+.+...  .  ......+..++|+|++   
T Consensus        33 ~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~~~~~~~v~~~d--~~~~~~~~--~--~~~~~~~~~~~~s~dg---  100 (353)
T 3vgz_A           33 EMLRKAVGKGAYEMAYSQQ---ENALWLATSQSRKLDKGGVVYRLD--PVTLEVTQ--A--IHNDLKPFGATINNTT---  100 (353)
T ss_dssp             CEEEEEEESSEEEEEEETT---TTEEEEEECCCTTTEESEEEEEEC--TTTCCEEE--E--EEESSCCCSEEEETTT---
T ss_pred             hhhhhhhccCccceEECCC---CCEEEEEcCCCcCCCCCccEEEEc--CCCCeEEE--E--EecCCCcceEEECCCC---
Confidence            3455566778999999999   98888877310   0156788855  44444443  2  2334568899999999   


Q ss_pred             CCC-eEEEeC-C-cEEEEeecCCcceeEEEeecCCCcc----CCCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCe
Q 040307           87 NPD-IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSE----FSSAITSFDWAGFDTRRVATCS--VDTTCVIWDIDREI  157 (339)
Q Consensus        87 ~~~-~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~  157 (339)
                        + ++++.. + .|.+||..+++  ....+..+....    ....+.+++|+| +++.+++++  .++.|.+||+++++
T Consensus       101 --~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A          101 --QTLWFGNTVNSAVTAIDAKTGE--VKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIK  175 (353)
T ss_dssp             --TEEEEEETTTTEEEEEETTTCC--EEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTE
T ss_pred             --CEEEEEecCCCEEEEEeCCCCe--eEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCc
Confidence              5 555555 3 99999999887  555555432100    001268899998 888777665  47899999999999


Q ss_pred             eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307          158 LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDSNK  235 (339)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~~~  235 (339)
                      ....+..+...+.+++|+ +++.+++++.++.|.+||+.+.+....+.... .+...+..++|+| +++.+++++.+...
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAE  254 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSE
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCE
Confidence            888876566668899999 78899999999999999999887555444321 2345678899998 77777776665334


Q ss_pred             EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE
Q 040307          236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV  315 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  315 (339)
                      |.+||... .+.+..+....  ...++|+|++..++++...++.|.+||+.+.+             ..........+.+
T Consensus       255 v~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~~  318 (353)
T 3vgz_A          255 VLVVDTRN-GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK-------------VVKTFDTPTHPNS  318 (353)
T ss_dssp             EEEEETTT-CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTE-------------EEEEEECCSEEEE
T ss_pred             EEEEECCC-CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCe-------------EEEEEecCCCCCe
Confidence            99999987 55566666433  36799999995345555578999999998876             4444445567899


Q ss_pred             EEecCCCCceEEEecC
Q 040307          316 VRWSPLELDWIAIAFV  331 (339)
Q Consensus       316 ~~~~p~~~~l~~~~~d  331 (339)
                      ++|+|+++.++.+..+
T Consensus       319 ~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          319 LALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEECTTSCEEEEEEEC
T ss_pred             EEEcCCCCEEEEEEcc
Confidence            9999999977665543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=3.4e-25  Score=187.31  Aligned_cols=282  Identities=11%  Similarity=0.087  Sum_probs=190.9

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcc
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRT  108 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~  108 (339)
                      +.+++|++....++.|.+|.++..++.+...  ....+...+..++|+|++     ++++++.   + .|.+|++.+++.
T Consensus         3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~--~~~~~~~~p~~~a~spdg-----~l~~~~~~~~~~~v~~~~~~~g~~   75 (347)
T 3hfq_A            3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTND--GLLAATQNPTYLALSAKD-----CLYSVDKEDDEGGIAAWQIDGQTA   75 (347)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTTEEEEE--EEEEECSCCCCEEECTTC-----EEEEEEEETTEEEEEEEEEETTEE
T ss_pred             cEEEEEeccCCCCCCEEEEEEcCCCCeEEEe--eeeeccCCcceEEEccCC-----eEEEEEecCCCceEEEEEecCCcE
Confidence            4677776544457789999999877766542  123455678899999999     7665553   3 999999987765


Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCC-Ce--eeeeeec---------cCCceeEEEec
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDR-EI--LETQLVA---------HDREVYDISWG  175 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~-~~--~~~~~~~---------~~~~v~~~~~~  175 (339)
                      +.+..+..+.     ..+..++|+| ++++|++++ .++.|.+|++.. +.  .+..+..         ....+.+++|+
T Consensus        76 ~~~~~~~~~~-----~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s  149 (347)
T 3hfq_A           76 HKLNTVVAPG-----TPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT  149 (347)
T ss_dssp             EEEEEEEEES-----CCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred             EEeeeeecCC-----CCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence            4555544444     6788999998 999888887 689999999963 22  2333321         11247889999


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCCcceeeEEe-CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc---eEE
Q 040307          176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYE-NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP---VVV  250 (339)
Q Consensus       176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~---~~~  250 (339)
                       +++++++...++.|++||+........... .......+..++|+| +++++++++.....+.+|++......   +..
T Consensus       150 pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  228 (347)
T 3hfq_A          150 PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGI  228 (347)
T ss_dssp             TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence             677666666788999999983322222111 111234678899998 88877665544434999998752221   222


Q ss_pred             EecCC------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCC
Q 040307          251 LSKHE------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLEL  323 (339)
Q Consensus       251 ~~~~~------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~  323 (339)
                      +....      ..+..++|+|+|..++++...++.|.+|++....          ..... ....+...+..++|+|+++
T Consensus       229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g----------~~~~~~~~~~~~~~~~~~~~spdg~  298 (347)
T 3hfq_A          229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG----------HLTLIQQISTEGDFPRDFDLDPTEA  298 (347)
T ss_dssp             EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG----------CEEEEEEEECSSSCCCEEEECTTSS
T ss_pred             eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC----------cEEEeEEEecCCCCcCeEEECCCCC
Confidence            32222      3488899999994334666678999999997432          01122 2223455689999999999


Q ss_pred             ceEEEec-CCeEEEEe
Q 040307          324 DWIAIAF-VNKLQLLK  338 (339)
Q Consensus       324 ~l~~~~~-d~~v~~w~  338 (339)
                      +|++++. ++.+.+|+
T Consensus       299 ~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYA  314 (347)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEEcCCCcEEEEE
Confidence            8877764 58999995

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=3.1e-26  Score=212.79  Aligned_cols=279  Identities=11%  Similarity=0.034  Sum_probs=203.0

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeecccc-CC-----eEEEEecCCCCCcccceeeEee-cCC------------------
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDY-SN-----KIELVNFNPETSDFSADNRLIF-DHP------------------   71 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~-~~-----~i~i~~~~~~~~~~~~~~~~~~-~~~------------------   71 (339)
                      ...+.+++||||   |++|++++    . ++     .|.+|+.+.  ++...  .... .+.                  
T Consensus        36 ~~~~~~~~~Spd---G~~la~~~----~~d~~~~~~~i~~~d~~~--g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (741)
T 2ecf_A           36 GPTLMKPKVAPD---GSRVTFLR----GKDSDRNQLDLWSYDIGS--GQTRL--LVDSKVVLPGTETLSDEEKARRERQR  104 (741)
T ss_dssp             CCCCEEEEECTT---SSEEEEEE----CCSSCTTEEEEEEEETTT--CCEEE--EECGGGTC------------------
T ss_pred             CCCCCCceEecC---CCEEEEEe----ccCCCCcccEEEEEECCC--CceeE--ccchhhcccccccccchhhhhhhhhh
Confidence            456999999999   99999998    5 66     788866554  33322  1111 111                  


Q ss_pred             ----CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCC---cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307           72 ----YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDD---RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        72 ----~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                          ..|.+++|+||+     +.|+++++ .|++||+.++   +.   ..+..+.     ..+..++|+| ++++|++++
T Consensus       105 ~~~~~~v~~~~~SpDg-----~~l~~~~~~~i~~~d~~~~~~~~~---~~l~~~~-----~~~~~~~~SP-DG~~la~~~  170 (741)
T 2ecf_A          105 IAAMTGIVDYQWSPDA-----QRLLFPLGGELYLYDLKQEGKAAV---RQLTHGE-----GFATDAKLSP-KGGFVSFIR  170 (741)
T ss_dssp             --CCEESCCCEECTTS-----SEEEEEETTEEEEEESSSCSTTSC---CBCCCSS-----SCEEEEEECT-TSSEEEEEE
T ss_pred             hccccCcceeEECCCC-----CEEEEEeCCcEEEEECCCCCcceE---EEcccCC-----cccccccCCC-CCCEEEEEe
Confidence                238899999999     88888776 9999999887   42   2344454     6799999999 999999987


Q ss_pred             CCCeEEEEECCCCeeeeeeeccCCc----------------eeEEEec-CCcEEEEEeCCC-------------------
Q 040307          144 VDTTCVIWDIDREILETQLVAHDRE----------------VYDISWG-GFNVFASVSGDC-------------------  187 (339)
Q Consensus       144 ~d~~v~i~d~~~~~~~~~~~~~~~~----------------v~~~~~~-~~~~l~~~~~d~-------------------  187 (339)
                       ++.|++||+.+++.......+...                +..++|+ ++++|++++.|+                   
T Consensus       171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence             469999999988765544433332                4789999 789999887765                   


Q ss_pred             --------------cEEEEECCC-CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-----CCCeEEEEecCCCCCc
Q 040307          188 --------------SVRVFDLRD-KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-----DSNKVVVLDIRFPTNP  247 (339)
Q Consensus       188 --------------~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----d~~~i~i~d~~~~~~~  247 (339)
                                    .|++||+.+ ++.... .....+...+..++| | +++.|++++.     +.. |++||+.+ ++.
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~-i~~~d~~~-g~~  324 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQWI-DLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLD-LVEVTLAS-NQQ  324 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCEEE-CCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEE-EEEEETTT-CCE
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceEEe-cCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEE-EEEEECCC-Cce
Confidence                          788999988 664332 221235567899999 9 8888887765     234 99999987 455


Q ss_pred             eEEEecCCC----CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEE-EecCCC
Q 040307          248 VVVLSKHEG----SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVV-RWSPLE  322 (339)
Q Consensus       248 ~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~p~~  322 (339)
                      ...+..+..    .+..++|+|+| +++++++.||.++||.+....            ....+..+...|..+ .|+|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~------------~~~~l~~~~~~v~~~~~~s~dg  391 (741)
T 2ecf_A          325 RVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKG------------KAAALTHGNWSVDELLAVDEKA  391 (741)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSS------------CEEESCCSSSCEEEEEEEETTT
T ss_pred             EEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCC------------CeeeeeecceEEEeEeEEeCCC
Confidence            555554443    45689999999 599999999999999887554            123344566678887 599999


Q ss_pred             CceEEEe-cCC--eEEEEeC
Q 040307          323 LDWIAIA-FVN--KLQLLKV  339 (339)
Q Consensus       323 ~~l~~~~-~d~--~v~~w~v  339 (339)
                      +.++..+ .++  .++||++
T Consensus       392 ~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          392 GLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             TEEEEEECSSCTTCBEEEEE
T ss_pred             CEEEEEEeCCCCceEEEEEE
Confidence            8776544 455  7899874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.4e-25  Score=192.50  Aligned_cols=248  Identities=14%  Similarity=0.119  Sum_probs=184.5

Q ss_pred             ccEEEEeeeccccC---CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C----cEEEEee
Q 040307           32 KSRLAVGSFLEDYS---NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D----SLRLWEI  103 (339)
Q Consensus        32 ~~~la~g~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~----~i~iw~~  103 (339)
                      +..+++++... .+   +.|++|+++.  ....   .+ ..|...+.+++|+|++     +.|++++ +    .|++||+
T Consensus       143 ~~~l~~~s~~~-~~~~~~~i~i~d~~g--~~~~---~l-~~~~~~v~~~~~Spdg-----~~la~~s~~~~~~~i~~~d~  210 (415)
T 2hqs_A          143 RTRIAYVVQTN-GGQFPYELRVSDYDG--YNQF---VV-HRSPQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTL  210 (415)
T ss_dssp             TCEEEEEEECS-SSSCCEEEEEEETTS--CSCE---EE-EEESSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEET
T ss_pred             CCEEEEEEecC-CCCccceEEEEcCCC--CCCE---EE-eCCCCcceeeEEcCCC-----CEEEEEEecCCCcEEEEEEC
Confidence            44566665210 12   7999988763  2222   22 5788899999999999     7777765 2    8999999


Q ss_pred             cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCe--EEEEECCCCeeeeeeeccCCceeEEEec-CCcE
Q 040307          104 HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTT--CVIWDIDREILETQLVAHDREVYDISWG-GFNV  179 (339)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~  179 (339)
                      .+++  .. .+..+.     ..+.+++|+| +++.|+ +++.++.  |++||+++++. ..+..|...+.+++|+ +++.
T Consensus       211 ~tg~--~~-~l~~~~-----~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~  280 (415)
T 2hqs_A          211 ANGA--VR-QVASFP-----RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQN  280 (415)
T ss_dssp             TTCC--EE-EEECCS-----SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSE
T ss_pred             CCCc--EE-EeecCC-----CcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCE
Confidence            9886  32 455555     7899999999 898777 6665554  99999988765 5666788899999999 7888


Q ss_pred             EEEEeC-CC--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCCceEEEecC
Q 040307          180 FASVSG-DC--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTNPVVVLSKH  254 (339)
Q Consensus       180 l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~~~~~  254 (339)
                      |++++. ++  .|++||+.+++....  .  .+...+.+++|+| ++++|++++.+.  ..|++||+.. ++ ...+..+
T Consensus       281 l~~~s~~~g~~~i~~~d~~~~~~~~l--~--~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~-~~-~~~l~~~  353 (415)
T 2hqs_A          281 LAFTSDQAGRPQVYKVNINGGAPQRI--T--WEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLSST  353 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCCEEC--C--CSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTT-CC-EEECCCS
T ss_pred             EEEEECCCCCcEEEEEECCCCCEEEE--e--cCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCC-CC-EEEecCC
Confidence            888776 44  677779887763222  1  1345788999998 899998887752  2499999986 33 3556655


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCC---cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDS---RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL  323 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  323 (339)
                      . .+.+++|+|++ ++|++++.++   .|++||+....             ...+..|.+.|.+++|+|...
T Consensus       354 ~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~-------------~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          354 F-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRF-------------KARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             S-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCC-------------EEECCCSSSEEEEEEECCCCC
T ss_pred             C-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCc-------------EEEeeCCCCCCcCCccccccc
Confidence            4 89999999999 5888877666   79999987655             456667889999999999754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=4e-26  Score=188.13  Aligned_cols=253  Identities=11%  Similarity=0.095  Sum_probs=183.3

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecC-CcceeEEEeecCCCcc
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHD-DRTELKSLLNSNKTSE  121 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~-~~~~~~~~~~~~~~~~  121 (339)
                      .++.|++|+...  ++...    ...|...|.+++|+|++     ++|+++++ .|++||+.+ ++  .......+.   
T Consensus        20 ~~~~i~~~d~~~--~~~~~----~~~~~~~v~~~~~spdg-----~~l~~~~~~~i~~~d~~~~~~--~~~~~~~~~---   83 (297)
T 2ojh_A           20 MRSSIEIFNIRT--RKMRV----VWQTPELFEAPNWSPDG-----KYLLLNSEGLLYRLSLAGDPS--PEKVDTGFA---   83 (297)
T ss_dssp             CCEEEEEEETTT--TEEEE----EEEESSCCEEEEECTTS-----SEEEEEETTEEEEEESSSCCS--CEECCCTTC---
T ss_pred             cceeEEEEeCCC--Cceee----eccCCcceEeeEECCCC-----CEEEEEcCCeEEEEeCCCCCC--ceEeccccc---
Confidence            689999977653  33332    25678899999999999     88888877 999999998 76  444444431   


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeC--CC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCcEEEEECC
Q 040307          122 FSSAITSFDWAGFDTRRVATCSV--DT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLR  195 (339)
Q Consensus       122 ~~~~i~~~~~~~~~~~~l~~~~~--d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~  195 (339)
                       ...+.+++|+| ++++|++++.  ++  .|..+++.+++ ...+..+ ..+..++|+ +++.|+ +++.++.+++|++.
T Consensus        84 -~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A           84 -TICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             -CCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             -cccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence             15678999998 9999999983  34  45555555554 3444433 358899999 677666 78889999999865


Q ss_pred             CCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307          196 DKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG-MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV  274 (339)
Q Consensus       196 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  274 (339)
                      ..........  .+...+.+++|+| ++++|++++ .++. +++|++......+..+..|...+..++|+|++ ++|+++
T Consensus       160 ~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~  234 (297)
T 2ojh_A          160 IDSGVETRLT--HGEGRNDGPDYSP-DGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-DKVVFV  234 (297)
T ss_dssp             TTTCCEEECC--CSSSCEEEEEECT-TSSEEEEEECTTSS-CEEEEEETTSSCEEECCCCSEEEEEEEECTTS-SEEEEE
T ss_pred             CCCCcceEcc--cCCCccccceECC-CCCEEEEEecCCCC-ccEEEECCCCCCcEEEecCCcccCCeEECCCC-CEEEEE
Confidence            3322222222  2457899999998 888777666 4777 99999875456677888888889999999999 577777


Q ss_pred             eCC-----------CcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCC
Q 040307          275 ADD-----------SRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       275 ~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~  332 (339)
                      +.+           +.|.+||+...+           ...+ ....|...+..++|+|+++.|++++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~-----------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGN-----------VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCS-----------CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCC-----------ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            755           569999998766           1112 2336778899999999999888776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=6e-25  Score=203.05  Aligned_cols=283  Identities=13%  Similarity=0.116  Sum_probs=197.8

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      ..|.+++|||+   +.++++ .     ++.|++|++..  ++...    ...+...+.+++|+|++     +.||.+.+ 
T Consensus        82 ~~v~~~~~spd---~~~~~~-~-----~~~i~~~d~~~--~~~~~----l~~~~~~~~~~~~SpdG-----~~la~~~~~  141 (706)
T 2z3z_A           82 FPSFRTLDAGR---GLVVLF-T-----QGGLVGFDMLA--RKVTY----LFDTNEETASLDFSPVG-----DRVAYVRNH  141 (706)
T ss_dssp             CCCEEEEETTT---TEEEEE-E-----TTEEEEEETTT--TEEEE----EECCTTCCTTCEECTTS-----SEEEEEETT
T ss_pred             cCceeEEECCC---CeEEEE-E-----CCEEEEEECCC--CceEE----ccCCcccccCCcCCCCC-----CEEEEEECC
Confidence            57999999999   655444 5     69999977653  33332    24567789999999999     78888776 


Q ss_pred             cEEEEeecC-----CcceeEEEeecCCCc---------cCCCCEEEEEEcCCCCCEEEEEe-------------------
Q 040307           97 SLRLWEIHD-----DRTELKSLLNSNKTS---------EFSSAITSFDWAGFDTRRVATCS-------------------  143 (339)
Q Consensus        97 ~i~iw~~~~-----~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~-------------------  143 (339)
                      .|++|++.+     ++  .......+...         +....+.++.|+| ++++|++++                   
T Consensus       142 ~i~v~~~~~~~~~~g~--~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~  218 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSR--AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEA  218 (706)
T ss_dssp             EEEEEECBCTTSCCCC--CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred             eEEEEecCcccccCCC--cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCC
Confidence            999999988     65  33322222200         0001257899999 999999987                   


Q ss_pred             --------------CCCeEEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCC-----cEEEEECCCCccee
Q 040307          144 --------------VDTTCVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDC-----SVRVFDLRDKERST  201 (339)
Q Consensus       144 --------------~d~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~i~d~~~~~~~~  201 (339)
                                    .+..|++||+.+++......  .|...+.+++|+ +++.|++++.++     .|++||+.+++...
T Consensus       219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~  298 (706)
T 2z3z_A          219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR  298 (706)
T ss_dssp             EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred             ceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence                          44689999999887544432  466779999999 788888887775     89999999884333


Q ss_pred             eEEeCCCCC---CCeEEEEEec-CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEeC
Q 040307          202 IIYENPVQD---CPLLRLEWNK-ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVAD  276 (339)
Q Consensus       202 ~~~~~~~~~---~~v~~~~~~p-~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~  276 (339)
                      .+.... +.   ..+..++|+| .+++++++++.++. ++||++...+..+..+..+...+.. ++|+|++..++++++.
T Consensus       299 ~~~~~~-~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          299 TLFVET-DKHYVEPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEEEEE-CSSCCCCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             EEEEcc-CCCeECccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            333211 11   1246789997 26678888888887 8999887445667778778778877 7999999534444555


Q ss_pred             CC--cEEEEEe--cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC----CeEEEEeC
Q 040307          277 DS--RALIWEV--VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV----NKLQLLKV  339 (339)
Q Consensus       277 dg--~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----~~v~~w~v  339 (339)
                      ++  .+.||.+  ....              .....+...+.+++|+|++++++.++.+    +.|++|++
T Consensus       377 ~~~~~~~l~~~d~~~~~--------------~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          377 ASPLERHFYCIDIKGGK--------------TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             SCTTCBEEEEEETTCCC--------------CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             CCCceEEEEEEEcCCCC--------------ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            54  3455544  4433              2222356678999999999987765433    45899874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.8e-24  Score=192.67  Aligned_cols=278  Identities=12%  Similarity=0.076  Sum_probs=200.3

Q ss_pred             EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEE
Q 040307           24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLW  101 (339)
Q Consensus        24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw  101 (339)
                      +|+|+   +.+++++.    .++.|.+||..  +++...  .+..++.  +..++|+|++     ++|++++ + .|++|
T Consensus       144 ~~~p~---~~~~vs~~----~d~~V~v~D~~--t~~~~~--~i~~g~~--~~~v~~spdg-----~~l~v~~~d~~V~v~  205 (543)
T 1nir_A          144 DLDLP---NLFSVTLR----DAGQIALVDGD--SKKIVK--VIDTGYA--VHISRMSASG-----RYLLVIGRDARIDMI  205 (543)
T ss_dssp             CCCGG---GEEEEEEG----GGTEEEEEETT--TCCEEE--EEECSTT--EEEEEECTTS-----CEEEEEETTSEEEEE
T ss_pred             ccCCC---CEEEEEEc----CCCeEEEEECC--CceEEE--EEecCcc--cceEEECCCC-----CEEEEECCCCeEEEE
Confidence            48898   88888888    79999997654  444443  3322333  8999999999     7777766 4 99999


Q ss_pred             ee--cCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEEeC-CCeEEEEECCCCeeeeeeec----------c
Q 040307          102 EI--HDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATCSV-DTTCVIWDIDREILETQLVA----------H  165 (339)
Q Consensus       102 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~----------~  165 (339)
                      |+  .+.+  .+..+...      ..+..++|+|.   +++++++++. +++|.+||..+++++..+..          |
T Consensus       206 D~~~~t~~--~~~~i~~g------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          206 DLWAKEPT--KVAEIKIG------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             ETTSSSCE--EEEEEECC------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             ECcCCCCc--EEEEEecC------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence            99  6654  66666643      46789999961   6788888874 89999999999998887754          2


Q ss_pred             C-CceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEec
Q 040307          166 D-REVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDI  241 (339)
Q Consensus       166 ~-~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~  241 (339)
                      . ..+..+.++ + ..++++...++.|.+||+.+.+........  +...+..++|+| +++++++++. ++. |.+||+
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~sp-dg~~l~va~~~~~~-v~v~D~  353 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDS-SHRYFMTAANNSNK-VAVIDS  353 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECT-TSCEEEEEEGGGTE-EEEEET
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECC-CCCEEEEEecCCCe-EEEEEC
Confidence            2 268889999 3 556777888999999999887644321111  245678899999 8887766654 566 999999


Q ss_pred             CCCCCceEEEec----CCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEE
Q 040307          242 RFPTNPVVVLSK----HEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINV  315 (339)
Q Consensus       242 ~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~  315 (339)
                      .+ ++.+..+..    |.+....+ ++|++..+++++. .|++|.+||+..... +     ....+.+ .+..|...+..
T Consensus       354 ~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~-~-----~~~~~~v~~l~~~g~~~~~  425 (543)
T 1nir_A          354 KD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH-P-----QYAWKKVAELQGQGGGSLF  425 (543)
T ss_dssp             TT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC-T-----TTBTSEEEEEECSCSCCCC
T ss_pred             CC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC-c-----hhcCeEEEEEEcCCCCceE
Confidence            87 566666664    44433333 4787445777776 689999999988330 0     0001233 44456777889


Q ss_pred             EEecCCCCceEEEe-------cCCeEEEEeC
Q 040307          316 VRWSPLELDWIAIA-------FVNKLQLLKV  339 (339)
Q Consensus       316 ~~~~p~~~~l~~~~-------~d~~v~~w~v  339 (339)
                      ++++|++++|.+.+       .+++|.+|++
T Consensus       426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             EECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             EEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            99999999877766       2789999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=9.5e-24  Score=177.81  Aligned_cols=282  Identities=13%  Similarity=0.075  Sum_probs=186.7

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +.+..+.+...+.+++|+|+   +++|++++.   .++.|.+|+++..++.......+  .....+..++|+|++     
T Consensus        29 ~~~~~~~~~~~~~~~~~spd---g~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg-----   95 (343)
T 1ri6_A           29 TLTQVVDVPGQVQPMVVSPD---KRYLYVGVR---PEFRVLAYRIAPDDGALTFAAES--ALPGSLTHISTDHQG-----   95 (343)
T ss_dssp             EEEEEEECSSCCCCEEECTT---SSEEEEEET---TTTEEEEEEECTTTCCEEEEEEE--ECSSCCSEEEECTTS-----
T ss_pred             EEeeeEecCCCCceEEECCC---CCEEEEeec---CCCeEEEEEecCCCCceeecccc--ccCCCCcEEEEcCCC-----
Confidence            44555667788999999999   998888882   23999999998655554432222  333488999999999     


Q ss_pred             CeEE-EeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCC-Ceeee--
Q 040307           89 DIVA-TSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDR-EILET--  160 (339)
Q Consensus        89 ~~la-~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~-~~~~~--  160 (339)
                      +.|+ ++. + .|.+|++.++. ......+..+      ..+.+++|+| +++++++++ .++.|.+||+.+ ++...  
T Consensus        96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  168 (343)
T 1ri6_A           96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL------DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQD  168 (343)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC------TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             CEEEEEecCCCeEEEEECCCCccccccccccCC------CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence            6554 444 4 89999996332 1233444433      4588999998 888888777 899999999987 54322  


Q ss_pred             --eeec-cCCceeEEEec-CCcEEEEE-eCCCcEEEEECCC--Ccc--eeeEEeCC---CCCCCeEEEEEecCCCCeEEE
Q 040307          161 --QLVA-HDREVYDISWG-GFNVFASV-SGDCSVRVFDLRD--KER--STIIYENP---VQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       161 --~~~~-~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~--~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~  228 (339)
                        .+.. ....+.+++|+ ++++++++ ..++.|.+||+..  ++.  .......+   .....+..++|+| ++++|++
T Consensus       169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v  247 (343)
T 1ri6_A          169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYA  247 (343)
T ss_dssp             EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEE
T ss_pred             ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEE
Confidence              2222 33478899999 67766544 4789999999964  321  11111111   1124577899998 7777765


Q ss_pred             Ee-eCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307          229 VG-MDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEP  303 (339)
Q Consensus       229 ~~-~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~  303 (339)
                      +. .++. |.+||+....   +.+..+..+.. +..++|+|++ ++|++++ .++.|.+|+++...         +....
T Consensus       248 ~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~---------g~~~~  315 (343)
T 1ri6_A          248 CDRTASL-ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQ---------GLLHE  315 (343)
T ss_dssp             EETTTTE-EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEETTT---------TEEEE
T ss_pred             EecCCCE-EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEcCCC---------ceeeE
Confidence            55 5666 9999997321   23344444444 8999999999 5777766 68999999877543         01122


Q ss_pred             eeeecccceeEEEEecCCCC
Q 040307          304 ELCYQSMAEINVVRWSPLEL  323 (339)
Q Consensus       304 ~~~~~~~~~i~~~~~~p~~~  323 (339)
                      +..........+++|.|+..
T Consensus       316 ~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          316 KGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEECSSSCCEEEEEEEC-
T ss_pred             ccccccCCCCeeEEEEcccC
Confidence            22223334566777777543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1e-24  Score=202.53  Aligned_cols=282  Identities=13%  Similarity=0.116  Sum_probs=199.2

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC-cccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS-DFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      .|.+++||||   +++|++++     ++.|.+|+.+.... ....    ...|...+..++|+||+     +.||.+++ 
T Consensus       110 ~v~~~~~SpD---g~~l~~~~-----~~~i~~~d~~~~~~~~~~~----l~~~~~~~~~~~~SPDG-----~~la~~~~~  172 (741)
T 2ecf_A          110 GIVDYQWSPD---AQRLLFPL-----GGELYLYDLKQEGKAAVRQ----LTHGEGFATDAKLSPKG-----GFVSFIRGR  172 (741)
T ss_dssp             ESCCCEECTT---SSEEEEEE-----TTEEEEEESSSCSTTSCCB----CCCSSSCEEEEEECTTS-----SEEEEEETT
T ss_pred             CcceeEECCC---CCEEEEEe-----CCcEEEEECCCCCcceEEE----cccCCcccccccCCCCC-----CEEEEEeCC
Confidence            3889999999   99999999     59999987764410 2222    24677889999999999     88888876 


Q ss_pred             cEEEEeecCCcceeEEEeecCCCcc-----------CCCCEEEEEEcCCCCCEEEEEeCCC-------------------
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSE-----------FSSAITSFDWAGFDTRRVATCSVDT-------------------  146 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~l~~~~~d~-------------------  146 (339)
                      .|++|++.+++  .......+....           ....+..+.|+| ++++|++++.|+                   
T Consensus       173 ~i~~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          173 NLWVIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             EEEEEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             cEEEEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence            99999998875  333332222000           001247899998 999999988765                   


Q ss_pred             --------------eEEEEECCC-Ceeeeeee--ccCCceeEEEecC-CcEEEEEeC-----CCcEEEEECCCCcceeeE
Q 040307          147 --------------TCVIWDIDR-EILETQLV--AHDREVYDISWGG-FNVFASVSG-----DCSVRVFDLRDKERSTII  203 (339)
Q Consensus       147 --------------~v~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~-~~~l~~~~~-----d~~i~i~d~~~~~~~~~~  203 (339)
                                    .|.+||+.+ ++......  .|...+..++| + ++.|++++.     +..|++||+.+++.....
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence                          889999988 76544332  36778899999 6 677776653     567999999988754443


Q ss_pred             EeCCCCCC---CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE-EeccCCCCeEEEEeCCC-
Q 040307          204 YENPVQDC---PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI-SWAPLYGRRLCSVADDS-  278 (339)
Q Consensus       204 ~~~~~~~~---~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg-  278 (339)
                      ...  ...   .+..++|+| +++++++++.++. ++||.+...+. ...+..|...+..+ .|+|++..++++++.++ 
T Consensus       329 ~~~--~~~~~~~~~~~~~sp-dg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~  403 (741)
T 2ecf_A          329 HET--SPTWVPLHNSLRFLD-DGSILWSSERTGF-QHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA  403 (741)
T ss_dssp             EEE--CSSCCCCCSCCEECT-TSCEEEEECTTSS-CEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred             EcC--CCCcCCcCCceEECC-CCeEEEEecCCCc-cEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence            332  112   346889998 7888888888887 78887764345 77788888888887 59999953445566665 


Q ss_pred             -cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC----CeEEEEe
Q 040307          279 -RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV----NKLQLLK  338 (339)
Q Consensus       279 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----~~v~~w~  338 (339)
                       .++||++....            ...........+..++|+|+++.++....+    ..+.+|+
T Consensus       404 ~~~~l~~~~~~g------------~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          404 RESQIYAVPLQG------------GQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             TCBEEEEEETTC------------CCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEEEcCC------------CCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence             89999998643            112222235568899999999987754332    3455554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.7e-25  Score=207.24  Aligned_cols=287  Identities=7%  Similarity=-0.002  Sum_probs=188.3

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC---CceEEEEcCCCCCCCCCeEEE
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY---TPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ...+.+++|+|+   ++++++ +    .||.|++|+....  +...  .+ ..|..   .|.+++||||+     +.|++
T Consensus        16 ~~~~~~~~~spd---g~~~~~-~----~dg~i~~~d~~~g--~~~~--~~-~~~~~~~~~v~~~~~SpDg-----~~l~~   77 (723)
T 1xfd_A           16 KIHDPEAKWISD---TEFIYR-E----QKGTVRLWNVETN--TSTV--LI-EGKKIESLRAIRYEISPDR-----EYALF   77 (723)
T ss_dssp             CCCCCCCCBSSS---SCBCCC-C----SSSCEEEBCGGGC--CCEE--EE-CTTTTTTTTCSEEEECTTS-----SEEEE
T ss_pred             cccccccEEcCC---CcEEEE-e----CCCCEEEEECCCC--cEEE--Ee-ccccccccccceEEECCCC-----CEEEE
Confidence            345789999999   997766 4    4899999665543  3332  12 33443   49999999999     77777


Q ss_pred             eC-----------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307           94 SG-----------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL  162 (339)
Q Consensus        94 ~~-----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  162 (339)
                      ++           ..+.+||+.+++...+.....+.     ..+..++|+| +++.|++++. +.|++||+.+++.....
T Consensus        78 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-----~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A           78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN-----AKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             EESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS-----CCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred             EecCccceeecceeeEEEEECCCCceEeccCCcccc-----ccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence            64           25789999988632222222222     4588899999 9999999886 89999999988766555


Q ss_pred             eccCCce------------------eEEEec-CCcEEEEEeCCC----------------------------------cE
Q 040307          163 VAHDREV------------------YDISWG-GFNVFASVSGDC----------------------------------SV  189 (339)
Q Consensus       163 ~~~~~~v------------------~~~~~~-~~~~l~~~~~d~----------------------------------~i  189 (339)
                      ..+...+                  .+++|+ +++.|++++.|+                                  .|
T Consensus       151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            4433333                  789999 788998887553                                  78


Q ss_pred             EEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEecCCCCCceEEEec-CCCCee---
Q 040307          190 RVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLDIRFPTNPVVVLSK-HEGSVN---  259 (339)
Q Consensus       190 ~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~~~~~~~~~-~~~~v~---  259 (339)
                      ++||+.+++....+...   ..+...+..++|+| +|+++++....+   ..|++||+.. ++....+.. +...+.   
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~  308 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQN  308 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEeccC
Confidence            99999887642322211   01245788999999 888887765432   2499999986 444444433 344443   


Q ss_pred             -EEEeccCCCCeEEE-EeCCC----c--EEEEEecCCCCCCCCCCCCCcccceeeecccceeEE-EEecCCCCceEEEec
Q 040307          260 -GISWAPLYGRRLCS-VADDS----R--ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV-VRWSPLELDWIAIAF  330 (339)
Q Consensus       260 -~~~~~p~~~~~l~~-~~~dg----~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~l~~~~~  330 (339)
                       .++|+|+|..+++. +..++    .  |.+||+.... .        ......+..+...+.. ++|+|+++.|+..+.
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~--------~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~  379 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS-S--------NDNIQSITSGDWDVTKILAYDEKGNKIYFLST  379 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS-S--------SCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC-C--------ccceeEeecCCeEEEeeeEEcCCCCEEEEEEc
Confidence             88999999533333 45677    4  5555522322 0        0001222222333444 799999998876654


Q ss_pred             C---CeEEEEeC
Q 040307          331 V---NKLQLLKV  339 (339)
Q Consensus       331 d---~~v~~w~v  339 (339)
                      +   +.++||++
T Consensus       380 ~~~~~~~~l~~~  391 (723)
T 1xfd_A          380 EDLPRRRQLYSA  391 (723)
T ss_dssp             SSCTTCCEEEEE
T ss_pred             CCCCcceEEEEE
Confidence            4   78899874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=9.2e-24  Score=177.25  Aligned_cols=275  Identities=9%  Similarity=0.059  Sum_probs=184.0

Q ss_pred             EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEeC-C-cEEE
Q 040307           24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATSG-D-SLRL  100 (339)
Q Consensus        24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~~-~-~i~i  100 (339)
                      .|.++  .+..++++.    .++.|.+|+...  ++...  .+ ..+...+ .++|+|++     + +++++. + .|.+
T Consensus         4 ~~~~~--~~~~~v~~~----~~~~v~~~d~~~--~~~~~--~~-~~~~~~~-~~~~s~dg-----~~l~~~~~~~~~i~~   66 (331)
T 3u4y_A            4 MFQTT--SNFGIVVEQ----HLRRISFFSTDT--LEILN--QI-TLGYDFV-DTAITSDC-----SNVVVTSDFCQTLVQ   66 (331)
T ss_dssp             ---CC--CCEEEEEEG----GGTEEEEEETTT--CCEEE--EE-ECCCCEE-EEEECSSS-----CEEEEEESTTCEEEE
T ss_pred             eEcCC--CCEEEEEec----CCCeEEEEeCcc--cceee--eE-EccCCcc-eEEEcCCC-----CEEEEEeCCCCeEEE
Confidence            45555  134455555    689999976553  34433  22 2334456 99999999     6 455554 3 9999


Q ss_pred             EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT---TCVIWDIDREILETQLVAHDREVYDISWG-G  176 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~  176 (339)
                      ||+.+++. ....+..+.     .+..+++|+| ++++++++..++   .|.+||+.+++.+..+.. .....+++|+ +
T Consensus        67 ~d~~~~~~-~~~~~~~~~-----~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spd  138 (331)
T 3u4y_A           67 IETQLEPP-KVVAIQEGQ-----SSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPN  138 (331)
T ss_dssp             EECSSSSC-EEEEEEECS-----SCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTT
T ss_pred             EECCCCce-eEEecccCC-----CCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCC
Confidence            99998872 155555554     4555599998 999888655553   899999999988877764 4456899999 6


Q ss_pred             Cc-EEEEEeCCCc-EEEEECCCCcceeeE-EeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCCCc---eE
Q 040307          177 FN-VFASVSGDCS-VRVFDLRDKERSTII-YENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPTNP---VV  249 (339)
Q Consensus       177 ~~-~l~~~~~d~~-i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~~~---~~  249 (339)
                      ++ ++++...++. |.+|++......... .........+..++|+| +++++++++. ++. |.+||+.. .+.   +.
T Consensus       139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~-v~v~d~~~-~~~~~~~~  215 (331)
T 3u4y_A          139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNS-IGILETQN-PENITLLN  215 (331)
T ss_dssp             SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTE-EEEEECSS-TTSCEEEE
T ss_pred             CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCe-EEEEECCC-Ccccceee
Confidence            66 4455566688 999999865432111 11001235679999998 7886666554 555 99999986 555   55


Q ss_pred             EEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCCCCCCCCCCCCcccceee-e-------cccceeEEEEecC
Q 040307          250 VLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-Y-------QSMAEINVVRWSP  320 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~i~~~~~~p  320 (339)
                      .+.. ...+..++|+|++ ++|+++ ..++.|.+||+.+.+           ...... .       ........++|+|
T Consensus       216 ~~~~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~sp  282 (331)
T 3u4y_A          216 AVGT-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGT-----------LSFVKSFGHGLLIDPRPLFGANQMALNK  282 (331)
T ss_dssp             EEEC-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTE-----------EEEEEEEECCCCCCCGGGTTCCCEEECT
T ss_pred             eccC-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCc-----------eeeecccccccccCCCCcccccceEECC
Confidence            6654 4677899999999 455544 467889999998766           100110 0       1112235689999


Q ss_pred             CCCceEEEe-cCCeEEEEeC
Q 040307          321 LELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       321 ~~~~l~~~~-~d~~v~~w~v  339 (339)
                      +++++++++ .++.|.+|++
T Consensus       283 dg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          283 TETKLFISANISRELKVFTI  302 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEET
T ss_pred             CCCEEEEecCCCCcEEEEEe
Confidence            999876655 5679999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=2.4e-24  Score=206.82  Aligned_cols=280  Identities=8%  Similarity=0.011  Sum_probs=212.4

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|...+.++.|+++    .+++++.    .++.+.||.++..+.....   + ..|. .+..++|+|++     +.|+.
T Consensus       200 ~~~~~~v~~~~~s~d----~l~~~~~----~dg~~~l~~~~~~g~~~~~---l-~~~~-~~~~~~~SpDG-----~~la~  261 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH----RIYFITD----IDGFGQIYSTDLDGKDLRK---H-TSFT-DYYPRHLNTDG-----RRILF  261 (1045)
T ss_dssp             ECCSSCCEEEEEETT----EEEEEEC----TTSSCEEEEEETTSCSCEE---C-CCCC-SSCEEEEEESS-----SCEEE
T ss_pred             cCCCCcccceEEeCC----EEEEEEe----ccCceEEEEEeCCCCcceE---e-cCCC-CcceeeEcCCC-----CEEEE
Confidence            346788999999987    3445555    5889999988876554443   1 2333 57788999999     77777


Q ss_pred             eCC-cEEEEeecCCcceeEEEeecCCCc------cCCCCEEEEEEc-CCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           94 SGD-SLRLWEIHDDRTELKSLLNSNKTS------EFSSAITSFDWA-GFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        94 ~~~-~i~iw~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                      +.+ .|.+|++....   +..+..+...      .+...+..++|+ | +++.|++++ ++.|.+|++..++.. .+..|
T Consensus       262 ~~~~~i~~~d~~~~~---l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~-~~~~~  335 (1045)
T 1k32_A          262 SKGGSIYIFNPDTEK---IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL-KVPEP  335 (1045)
T ss_dssp             EETTEEEEECTTTCC---EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE-ECSCC
T ss_pred             EeCCEEEEecCCceE---eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE-EccCC
Confidence            776 99999984433   2244331100      011468899999 9 999999888 789999999877644 35567


Q ss_pred             CC-ceeEEEecCCcEEEEEeCCCcEE-EEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          166 DR-EVYDISWGGFNVFASVSGDCSVR-VFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       166 ~~-~v~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      .. .+..++|++++.|+.++.+..+. +||+...+.... .   .+...+..++|+| ++++|++++.++. |++||+..
T Consensus       336 ~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l-~---~~~~~~~~~~~Sp-DG~~la~~~~~~~-v~~~d~~t  409 (1045)
T 1k32_A          336 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF-E---ENLGNVFAMGVDR-NGKFAVVANDRFE-IMTVDLET  409 (1045)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC-C---CCCCSEEEEEECT-TSSEEEEEETTSE-EEEEETTT
T ss_pred             CcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEe-c---CCccceeeeEECC-CCCEEEEECCCCe-EEEEECCC
Confidence            76 88999999677888888888888 899887653322 2   2567899999998 9999999999887 99999986


Q ss_pred             CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC----------cEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS----------RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI  313 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (339)
                       ++.......|...+.+++|+|+| ++|++++.++          .|++||+....             ......|...+
T Consensus       410 -g~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-------------~~~l~~~~~~~  474 (1045)
T 1k32_A          410 -GKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------------IFAATTENSHD  474 (1045)
T ss_dssp             -CCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------------EEECSCSSSBE
T ss_pred             -CceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-------------EEEeeCCCccc
Confidence             55556666888999999999999 5888776543          89999998765             44555677788


Q ss_pred             EEEEecCCCCceEEEecCCeEEEEe
Q 040307          314 NVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       314 ~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ..++|+|+|+.|+.++.++..++|+
T Consensus       475 ~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          475 YAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             CCceEcCCCCEEEEEecccCCcCcc
Confidence            9999999999888888877766664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.7e-23  Score=175.75  Aligned_cols=268  Identities=10%  Similarity=0.008  Sum_probs=186.1

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-CceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-TPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE  109 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~  109 (339)
                      ++|++++    .++.|.+|+..  +.+...  .+..++.. .+..++|+|+++    .+++++. + .|.+||+.+++  
T Consensus         2 ~~~v~~~----~~~~v~~~d~~--~~~~~~--~~~~~~~~~~~~~~~~s~dg~----~l~v~~~~~~~v~~~d~~~~~--   67 (337)
T 1pby_B            2 DYILAPA----RPDKLVVIDTE--KMAVDK--VITIADAGPTPMVPMVAPGGR----IAYATVNKSESLVKIDLVTGE--   67 (337)
T ss_dssp             EEEEEEE----TTTEEEEEETT--TTEEEE--EEECTTCTTCCCCEEECTTSS----EEEEEETTTTEEEEEETTTCC--
T ss_pred             cEEEEcC----CCCeEEEEECC--CCcEEE--EEEcCCCCCCccceEEcCCCC----EEEEEeCCCCeEEEEECCCCC--
Confidence            4678887    69999997654  334333  22223322 588999999993    3445555 3 99999998887  


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe------------CCCeEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS------------VDTTCVIWDIDREILETQLVAHDREVYDISWG-G  176 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~  176 (339)
                      ....+.......+...+..++|+| ++++++++.            .++.|.+||+.+++.+..+.. ...+.+++|+ +
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d  145 (337)
T 1pby_B           68 TLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD  145 (337)
T ss_dssp             EEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT
T ss_pred             eEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC
Confidence            444443211000002566899998 898888886            579999999999887777754 4567889999 7


Q ss_pred             CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----------------------
Q 040307          177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----------------------  234 (339)
Q Consensus       177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----------------------  234 (339)
                      +++|+++  ++.|.+||+.+++....+... ....   .+.|+| ++..++..+..+.                      
T Consensus       146 g~~l~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T 1pby_B          146 GSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-SWEA---ETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             SSCEEEE--SSSEEEEETTTTEEEEEECST-TTTT---TTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             CCEEEEe--CCeEEEEECCCCcEeeeeecc-ccCC---CceeCC-CccEEeeeccCCCceeeeeeccccccccccccccc
Confidence            7777777  689999999988754333222 1112   237887 6665554443322                      


Q ss_pred             -eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307          235 -KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI  313 (339)
Q Consensus       235 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (339)
                       .|.+||+.........+..+...+.+++|+|++ ++|+++  ++.|.+||+...+             ..........+
T Consensus       219 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~-------------~~~~~~~~~~~  282 (337)
T 1pby_B          219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------------SIKRVPLPHSY  282 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------------EEEEEECSSCC
T ss_pred             cceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc-------------CcceecCCCce
Confidence             268999987432233445566778899999999 577777  7999999998766             33333445568


Q ss_pred             EEEEecCCCCceEEEecCCeEEEEeC
Q 040307          314 NVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       314 ~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .+++|+|+++.+++++.++.|++|++
T Consensus       283 ~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          283 YSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             eeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            89999999998888889999999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.2e-23  Score=194.85  Aligned_cols=283  Identities=8%  Similarity=0.046  Sum_probs=186.0

Q ss_pred             CeeEEEeeecCCcccEEEEeeecc-----ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLE-----DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .|.+++||||   |++||+++...     ..++.+.+|+++........   ....|...+..++||||+     +.||.
T Consensus        62 ~v~~~~~SpD---g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~~~~SPdG-----~~la~  130 (723)
T 1xfd_A           62 RAIRYEISPD---REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD---PPEVSNAKLQYAGWGPKG-----QQLIF  130 (723)
T ss_dssp             TCSEEEECTT---SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC---CTTCCSCCCSBCCBCSST-----TCEEE
T ss_pred             ccceEEECCC---CCEEEEEecCccceeecceeeEEEEECCCCceEecc---CCccccccccccEECCCC-----CEEEE
Confidence            4899999999   99999987210     01378889877654321111   112455568999999999     88888


Q ss_pred             eCC-cEEEEeecCCcceeEEEeecCCCc-------------cCCCCEEEEEEcCCCCCEEEEEeCCC-------------
Q 040307           94 SGD-SLRLWEIHDDRTELKSLLNSNKTS-------------EFSSAITSFDWAGFDTRRVATCSVDT-------------  146 (339)
Q Consensus        94 ~~~-~i~iw~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~l~~~~~d~-------------  146 (339)
                      +++ .|++|++.+++  .......+...             +....+.+++|+| +++.|++++.++             
T Consensus       131 ~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          131 IFENNIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EETTEEEEESSSSSC--CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EECCeEEEEECCCCc--eEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCC
Confidence            886 99999999876  33333332200             0002347899999 999999987653             


Q ss_pred             ---------------------eEEEEECCCCeeeeeeecc------CCceeEEEec-CCcEEEEEeC----CCcEEEEEC
Q 040307          147 ---------------------TCVIWDIDREILETQLVAH------DREVYDISWG-GFNVFASVSG----DCSVRVFDL  194 (339)
Q Consensus       147 ---------------------~v~i~d~~~~~~~~~~~~~------~~~v~~~~~~-~~~~l~~~~~----d~~i~i~d~  194 (339)
                                           .|++||+.+++....+..+      ...+..++|+ +++++++...    +..|++||+
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence                                 7999999888755555543      5678999999 7877766643    357999999


Q ss_pred             CCCcceeeEEeCCCCCCCe----EEEEEecCCCCeEEEE--eeCC----C-eEEEEecCCCCC--ceEEEecCCCCeeE-
Q 040307          195 RDKERSTIIYENPVQDCPL----LRLEWNKADPRFMATV--GMDS----N-KVVVLDIRFPTN--PVVVLSKHEGSVNG-  260 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~l~~~--~~d~----~-~i~i~d~~~~~~--~~~~~~~~~~~v~~-  260 (339)
                      .+++........  +...+    ..++|+| +|+.|+..  ..++    . .|.+||....+.  ....+..+...+.. 
T Consensus       288 ~~g~~~~~~~~~--~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~  364 (723)
T 1xfd_A          288 TTGVCTKKHEDE--SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI  364 (723)
T ss_dssp             TTCCEEEEEEEE--CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred             CCCcceEEEEec--cCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence            988754443332  22333    3789999 77766654  3444    2 377777323233  13444443445554 


Q ss_pred             EEeccCCCCeEEEEeC-C--CcEEEEEecCCCCCCCCCCCCCcccceeeec---ccceeEEEEecCCCCceEEEe
Q 040307          261 ISWAPLYGRRLCSVAD-D--SRALIWEVVGPGYRSGNGGPSGDVEPELCYQ---SMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       261 ~~~~p~~~~~l~~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      ++|+|++. .|+..+. +  +.++||++....          ......+..   |...+..++|+|+++.++...
T Consensus       365 ~~~spdg~-~l~~~~~~~~~~~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          365 LAYDEKGN-KIYFLSTEDLPRRRQLYSANTVG----------NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEETTTT-EEEEEESSSCTTCCEEEEECSST----------TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             eEEcCCCC-EEEEEEcCCCCcceEEEEEeCCC----------CCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            69999994 6665554 4  789999998654          001122221   566789999999998777543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=2.3e-22  Score=170.91  Aligned_cols=284  Identities=10%  Similarity=0.072  Sum_probs=187.4

Q ss_pred             EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC------
Q 040307           23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD------   96 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~------   96 (339)
                      .+..+.   ..++.+|++..+.++.|.+|.++..++.+..  .... +...+..++|+|++     ++|++++.      
T Consensus         7 ~~~~~~---~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~--~~~~-~~~~p~~l~~spdg-----~~l~~~~~~~~~~~   75 (361)
T 3scy_A            7 PSTTDS---ELTMLVGTYTSGNSKGIYTFRFNEETGESLP--LSDA-EVANPSYLIPSADG-----KFVYSVNEFSKDQA   75 (361)
T ss_dssp             CCGGGG---EEEEEEEECCSSSCCEEEEEEEETTTCCEEE--EEEE-ECSCCCSEEECTTS-----SEEEEEECCSSTTC
T ss_pred             hhhCCC---ceEEEEEeccCCCCCCEEEEEEeCCCCCEEE--eecc-cCCCCceEEECCCC-----CEEEEEEccCCCCC
Confidence            334445   6788888865556789999999988777665  2223 67778899999999     66655432      


Q ss_pred             cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeee---c------
Q 040307           97 SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLV---A------  164 (339)
Q Consensus        97 ~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~---~------  164 (339)
                      .|.+|+++.  ++...+.....+.     .....+++   ++++|++++ .++.|.+|++.....+..+.   .      
T Consensus        76 ~v~~~~~~~~~g~~~~~~~~~~~~-----~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~  147 (361)
T 3scy_A           76 AVSAFAFDKEKGTLHLLNTQKTMG-----ADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP  147 (361)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSS-----SCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred             cEEEEEEeCCCCcEEEeeEeccCC-----CCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence            899999876  3333444444333     45667777   456666655 68899999997543322211   1      


Q ss_pred             -----cCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcc------ee-----eEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          165 -----HDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKER------ST-----IIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       165 -----~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~------~~-----~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                           +...+.+++|+ +++++++++ .++.|.+|++.....      ..     ..... .....+..++|+| +++++
T Consensus       148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~sp-dg~~l  225 (361)
T 3scy_A          148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNS-DGKFA  225 (361)
T ss_dssp             CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECT-TSSEE
T ss_pred             CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcC-CCCEE
Confidence                 12235789999 677565554 588999999876542      11     11121 1345678999998 88888


Q ss_pred             EEEee-CCCeEEEEecCCCCCc--eEEEe---cCCCCeeEEEeccCCCCeEEEEeC--CCcEEEEEecCCCCCCCCCCCC
Q 040307          227 ATVGM-DSNKVVVLDIRFPTNP--VVVLS---KHEGSVNGISWAPLYGRRLCSVAD--DSRALIWEVVGPGYRSGNGGPS  298 (339)
Q Consensus       227 ~~~~~-d~~~i~i~d~~~~~~~--~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~  298 (339)
                      ++++. ++. |.+||+.. +..  +..+.   .+......++|+|++ ++|+++..  ++.|.+|++....         
T Consensus       226 ~v~~~~~~~-v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~---------  293 (361)
T 3scy_A          226 YLINEIGGT-VIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETN---------  293 (361)
T ss_dssp             EEEETTTCE-EEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTT---------
T ss_pred             EEEcCCCCe-EEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCC---------
Confidence            77774 555 99999974 322  22222   223456799999999 57765554  5899999997432         


Q ss_pred             CcccceeeecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307          299 GDVEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                      +.............+..++|+|++++|++++ .++.|.+|++
T Consensus       294 g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          294 GTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             CCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            0111222222245688999999999888776 6789999753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=2e-22  Score=174.90  Aligned_cols=206  Identities=13%  Similarity=0.168  Sum_probs=150.1

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC------CC---c-ccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE------TS---D-FSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~------~~---~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      .+..++++++   +.++++|+    .++ ++||+....      ..   . ..........+...|.+++|+|++     
T Consensus        38 ~~n~lavs~~---~~~l~~~~----~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-----  104 (434)
T 2oit_A           38 RSSLLAVSNK---YGLVFAGG----ASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-----  104 (434)
T ss_dssp             CCBCEEEETT---TTEEEEEE----TTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-----
T ss_pred             CccEEEEecC---CCEEEEEC----CCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-----
Confidence            5889999999   88999988    455 888764311      00   0 001111224567789999999999     


Q ss_pred             CeEE----EeC-C-cEEEEeecCC-----c----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307           89 DIVA----TSG-D-SLRLWEIHDD-----R----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI  153 (339)
Q Consensus        89 ~~la----~~~-~-~i~iw~~~~~-----~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~  153 (339)
                      ++||    +++ | .|+|||+.+.     +    ......+.+|.     ..|++++|+|.++++|++++.||+|++||+
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG-----GMVIDMKWNPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG-----GSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC-----CceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence            7888    666 4 9999998764     1    11234555666     899999999944899999999999999999


Q ss_pred             CCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC----CCCCCeEEEEEecCCCCeEEE
Q 040307          154 DREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP----VQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      +++.......+|...|.+++|+ ++++|++|+.|+.|++||++ ++....+....    .|...+.+++|++ ++.++++
T Consensus       180 ~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~  257 (434)
T 2oit_A          180 TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIV  257 (434)
T ss_dssp             SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEE
T ss_pred             CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEE
Confidence            9987766667788999999999 79999999999999999998 33222222111    1234789999998 6666655


Q ss_pred             Ee-eCCC-----eEEEEecCCC
Q 040307          229 VG-MDSN-----KVVVLDIRFP  244 (339)
Q Consensus       229 ~~-~d~~-----~i~i~d~~~~  244 (339)
                      .+ .+|.     .+++|+++..
T Consensus       258 ~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          258 YAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTCCSSSCCEEEEEECCCT
T ss_pred             EccCCCccCCCCceEEEEeccC
Confidence            43 2221     3889999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=7.8e-23  Score=168.36  Aligned_cols=240  Identities=13%  Similarity=0.085  Sum_probs=168.7

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCC-CCCcccceeeEeecC-CCCceEEEEcCCCCC
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNP-ETSDFSADNRLIFDH-PYTPTNIAFFPSEET   85 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~   85 (339)
                      ++......+...|.+++|+|+   +++|+++.     ++.|.+|++.. ......    . ..+ ...+.+++|+|++  
T Consensus        32 ~~~~~~~~~~~~v~~~~~spd---g~~l~~~~-----~~~i~~~d~~~~~~~~~~----~-~~~~~~~~~~~~~spdg--   96 (297)
T 2ojh_A           32 RKMRVVWQTPELFEAPNWSPD---GKYLLLNS-----EGLLYRLSLAGDPSPEKV----D-TGFATICNNDHGISPDG--   96 (297)
T ss_dssp             TEEEEEEEESSCCEEEEECTT---SSEEEEEE-----TTEEEEEESSSCCSCEEC----C-CTTCCCBCSCCEECTTS--
T ss_pred             CceeeeccCCcceEeeEECCC---CCEEEEEc-----CCeEEEEeCCCCCCceEe----c-cccccccccceEECCCC--
Confidence            344445567889999999999   99999988     78999987765 322211    1 233 4778999999999  


Q ss_pred             CCCCeEEEeC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEECCC-Ceee
Q 040307           86 LNPDIVATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWDIDR-EILE  159 (339)
Q Consensus        86 ~~~~~la~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~-~~~~  159 (339)
                         ++|++++  .  ...||.++.... ....+..+      ..+..++|+| +++.|+ +++.++.+++|+++. ....
T Consensus        97 ---~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~------~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           97 ---ALYAISDKVEFGKSAIYLLPSTGG-TPRLMTKN------LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             ---SEEEEEECTTTSSCEEEEEETTCC-CCEECCSS------SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ---CEEEEEEeCCCCcceEEEEECCCC-ceEEeecC------CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcc
Confidence               7777765  1  566665543221 23334333      3588999998 888776 788899999998632 2334


Q ss_pred             eeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC----
Q 040307          160 TQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS----  233 (339)
Q Consensus       160 ~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~----  233 (339)
                      ..+..+...+.+++|+ +++.|+.++ .++.+++|++...........  .+...+..++|+| ++++|++++.++    
T Consensus       166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSP-SGDKVVFVSYDADVFD  242 (297)
T ss_dssp             EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECT-TSSEEEEEEEETTCCS
T ss_pred             eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECC-CCCEEEEEEcCCCCCc
Confidence            5566678889999999 677777665 589999999863322222222  2456788999998 888888877652    


Q ss_pred             ------CeEEEEecCCCCC-ceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307          234 ------NKVVVLDIRFPTN-PVVVLSKHEGSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       234 ------~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                            ..|++||+..... .+..+..|...+..++|+|++ +.|++++.+
T Consensus       243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~  292 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYF  292 (297)
T ss_dssp             CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEEC
T ss_pred             ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEec
Confidence                  2399999986322 234455788899999999999 477766654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=6.9e-23  Score=196.71  Aligned_cols=270  Identities=7%  Similarity=-0.045  Sum_probs=200.8

Q ss_pred             cCCeeEEEee-ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-CceEEEEcCCCCCCCCCeEEEe
Q 040307           17 QWPISTVAWS-VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-TPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        17 ~~~v~~i~~s-p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      ...+.+++|+ |+   ++.||+++     ++.|.+|+..  ......    ...|.. .+..++|+ ++     +.|+.+
T Consensus       295 ~~~v~~~~~S~pd---G~~la~~~-----~~~i~~~~~~--~~~~~~----~~~~~~~~~~~~~~s-dg-----~~l~~~  354 (1045)
T 1k32_A          295 IPSKFAEDFSPLD---GDLIAFVS-----RGQAFIQDVS--GTYVLK----VPEPLRIRYVRRGGD-TK-----VAFIHG  354 (1045)
T ss_dssp             CGGGGEEEEEECG---GGCEEEEE-----TTEEEEECTT--SSBEEE----CSCCSCEEEEEECSS-SE-----EEEEEE
T ss_pred             ccccceeeecCCC---CCEEEEEE-----cCEEEEEcCC--CCceEE----ccCCCcceEEeeeEc-CC-----CeEEEE
Confidence            3479999999 99   99999988     7899996554  333322    245666 89999999 88     777777


Q ss_pred             CC--cEE-EEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           95 GD--SLR-LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        95 ~~--~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      ++  .+. +|++..++  . ..+.+|.     ..+..++|+| ++++|++++.++.|++||+.+++....+..|...+.+
T Consensus       355 s~~~~l~~~~d~~~~~--~-~~l~~~~-----~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGK--A-EKFEENL-----GNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  425 (1045)
T ss_dssp             ETTEEEEEEEETTTCC--E-EECCCCC-----CSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             ECCCceEEEEECCCCC--c-eEecCCc-----cceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence            64  777 88887765  2 2333555     7899999998 9999999999999999999999877777788889999


Q ss_pred             EEec-CCcEEEEEeCCC----------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          172 ISWG-GFNVFASVSGDC----------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      ++|+ ++++|++++.++          .|++||+.+++ ...+   ..+...+..++|+| +|+.|++++.++. ..+|+
T Consensus       426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l---~~~~~~~~~~~~sp-dG~~l~~~s~~~~-~~~~~  499 (1045)
T 1k32_A          426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA---TTENSHDYAPAFDA-DSKNLYYLSYRSL-DPSPD  499 (1045)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC---SCSSSBEEEEEECT-TSCEEEEEESCCC-CCEEC
T ss_pred             eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe---eCCCcccCCceEcC-CCCEEEEEecccC-CcCcc
Confidence            9999 788888887654          89999998875 2222   22456788899998 8999998887766 66665


Q ss_pred             cCCCC------------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEE-----
Q 040307          241 IRFPT------------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCS-----  273 (339)
Q Consensus       241 ~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~-----  273 (339)
                      .....                                          ..+..+..|.+.+..++++|++ .++++     
T Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g  578 (1045)
T 1k32_A          500 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHG  578 (1045)
T ss_dssp             SSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCC
T ss_pred             hhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccC
Confidence            32110                                          1123344466788999999998 56664     


Q ss_pred             ------Ee--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          274 ------VA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       274 ------~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                            .+  ....|.+||+...+             .....   ..+..++|||||+.|++++.+ .+++|++
T Consensus       579 ~~~~~~~~~~~~~~l~~~d~~~~~-------------~~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~  635 (1045)
T 1k32_A          579 EFAAYYQGAPEKGVLLKYDVKTRK-------------VTEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFP  635 (1045)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCC-------------EEEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred             cccccccccCCCceEEEEECCCCc-------------EEEee---cCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence                  12  23467777776665             22222   568899999999988877665 8999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=3.1e-23  Score=191.56  Aligned_cols=269  Identities=12%  Similarity=0.089  Sum_probs=182.5

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-----------------CCCceEEEEc
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-----------------PYTPTNIAFF   80 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~l~~~   80 (339)
                      ..+..+.|. .   +.+ +++.    .++ | +||..........   + ..+                 ...|.+++|+
T Consensus        26 ~~~~~~~w~-g---~~~-~~~~----~~~-i-~~d~~tg~~~~~~---l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s   90 (706)
T 2z3z_A           26 EYVVGLQWM-G---DNY-VFIE----GDD-L-VFNKANGKSAQTT---R-FSAADLNALMPEGCKFQTTDAFPSFRTLDA   90 (706)
T ss_dssp             --CTTCEEE-T---TEE-EEEE----TTE-E-EEEC-------CE---E-EEHHHHHTTC-----------CCCEEEEET
T ss_pred             ccCCCCcCc-C---CeE-EEEe----CCc-E-EEECCCCcEeeEE---e-echhHhhhhccchhccccccccCceeEEEC
Confidence            456778888 5   554 4445    356 7 9776544330021   1 111                 1569999999


Q ss_pred             CCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-----
Q 040307           81 PSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-----  155 (339)
Q Consensus        81 ~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-----  155 (339)
                      |++     .++++..+.|++||+.+++  .. .+..+.     ..+.+++|+| +++.|+++ .++.|++||+.+     
T Consensus        91 pd~-----~~~~~~~~~i~~~d~~~~~--~~-~l~~~~-----~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           91 GRG-----LVVLFTQGGLVGFDMLARK--VT-YLFDTN-----EETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             TTT-----EEEEEETTEEEEEETTTTE--EE-EEECCT-----TCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred             CCC-----eEEEEECCEEEEEECCCCc--eE-EccCCc-----ccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccC
Confidence            995     7777766699999998875  33 333343     5678899999 99999985 689999999988     


Q ss_pred             CeeeeeeeccCCc--------------eeEEEec-CCcEEEEEe---------------------------------CCC
Q 040307          156 EILETQLVAHDRE--------------VYDISWG-GFNVFASVS---------------------------------GDC  187 (339)
Q Consensus       156 ~~~~~~~~~~~~~--------------v~~~~~~-~~~~l~~~~---------------------------------~d~  187 (339)
                      ++.......+...              +.++.|+ ++++|++++                                 .+.
T Consensus       156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            7655544333332              4889999 789999887                                 446


Q ss_pred             cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC----CeEEEEecCCCCCceEEEe--cCCC---Ce
Q 040307          188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS----NKVVVLDIRFPTNPVVVLS--KHEG---SV  258 (339)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~----~~i~i~d~~~~~~~~~~~~--~~~~---~v  258 (339)
                      .|++||+.+++.... .....+...+.+++|+| +++.|++++.++    ..|++||+.+... ...+.  .+..   .+
T Consensus       236 ~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          236 TVGIYHLATGKTVYL-QTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPL  312 (706)
T ss_dssp             EEEEEETTTTEEEEC-CCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCC
T ss_pred             EEEEEECCCCceEee-ccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECcc
Confidence            799999988764332 22223456789999998 899898887775    1399999987322 33322  2222   24


Q ss_pred             eEEEecc--CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE-EEecCCCCceEEEecC
Q 040307          259 NGISWAP--LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV-VRWSPLELDWIAIAFV  331 (339)
Q Consensus       259 ~~~~~~p--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~l~~~~~d  331 (339)
                      ..++|+|  ++ +++++++.|+.++||.+....           .....+..+...+.. ++|+|+++.++.++.+
T Consensus       313 ~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~-----------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          313 HPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTG-----------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             SCCEECTTCSS-EEEEEECTTSSCEEEEEETTS-----------CEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             CCceeecCCCC-EEEEEEccCCccEEEEEECCC-----------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            6789999  98 599999999999999988433           012233456666776 8999999887765543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=1.2e-22  Score=183.62  Aligned_cols=262  Identities=10%  Similarity=0.023  Sum_probs=184.9

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCCCCCCCCeEEEeC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ..+|++++|+||   |+.||+++.   .+|+++||+++  ++....   + ..+. ..+..++|+|+.     -++.+..
T Consensus        21 ~~~~~~~~~~~D---G~~la~~s~---~~g~~~lw~~~--~g~~~~---l-t~~~~~~~~~~~~spd~-----~l~~~~~   83 (582)
T 3o4h_A           21 AVEKYSLQGVVD---GDKLLVVGF---SEGSVNAYLYD--GGETVK---L-NREPINSVLDPHYGVGR-----VILVRDV   83 (582)
T ss_dssp             HSCEEEEEEEET---TTEEEEEEE---ETTEEEEEEEE--TTEEEE---C-CSSCCSEECEECTTCSE-----EEEEEEC
T ss_pred             ccchheeecCCC---CCeEEEEEc---cCCceeEEEEc--CCCcEe---e-ecccccccccccCCCCe-----EEEEecc
Confidence            568999999999   999999883   48999999873  333332   2 3444 689999999983     3443332


Q ss_pred             ---C-cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307           96 ---D-SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        96 ---~-~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                         + ...||.++.  ... .. .+...      ..+...+|+| +++ .+++++.++.+.+||+.+++...... +.. 
T Consensus        84 ~~g~~~~~l~~~~~~~~g~-~~-~l~~~------~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~-  152 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGE-EQ-RLEAV------KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELAR-LPG-  152 (582)
T ss_dssp             STTSCCEEEEEEETTSTTC-CE-ECTTS------CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS-
T ss_pred             CCCCcceEEEEEeccCCCc-cc-cccCC------CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeec-CCC-
Confidence               3 566766654  321 11 23222      2344567887 554 33444445555699998887655443 333 


Q ss_pred             eeEEEec-CCcEEEEEeCC----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEecC
Q 040307          169 VYDISWG-GFNVFASVSGD----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-KVVVLDIR  242 (339)
Q Consensus       169 v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d~~  242 (339)
                       .+++|+ ++++|++++.+    +.|++||+.+++... + .  .+...+..++|+| +|+.|+++..++. .|++||+.
T Consensus       153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l-~--~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F-D--SGEGSFSSASISP-GMKVTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-E-C--CSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTT
T ss_pred             -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-e-e--cCCCccccceECC-CCCEEEEccCCCeeEEEEEcCC
Confidence             789999 89999988877    789999998877432 2 2  2456789999999 9999997777771 39999998


Q ss_pred             CCCCceEEEecCCCCeeEEE--------eccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307          243 FPTNPVVVLSKHEGSVNGIS--------WAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN  314 (339)
Q Consensus       243 ~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  314 (339)
                      . ++.. .+..|...+..++        |+|+| .++++++.|+.+++|++  ++             ...  ...+.|.
T Consensus       227 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~-------------~~~--~~~~~v~  286 (582)
T 3o4h_A          227 D-GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GE-------------RVE--APQGNHG  286 (582)
T ss_dssp             T-CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TE-------------EEC--CCSSEEE
T ss_pred             C-CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CC-------------eec--cCCCceE
Confidence            6 4444 6777777777777        99999 79999999999999999  33             121  2346788


Q ss_pred             EEEecCCCCceEEEecCCe
Q 040307          315 VVRWSPLELDWIAIAFVNK  333 (339)
Q Consensus       315 ~~~~~p~~~~l~~~~~d~~  333 (339)
                      +++|+ +++.+++++.+..
T Consensus       287 ~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          287 RVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             EEEEE-TTEEEEEEEETTE
T ss_pred             EEEec-CCEEEEEEcCCCC
Confidence            99999 8877777666644

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=2e-21  Score=163.04  Aligned_cols=234  Identities=9%  Similarity=-0.021  Sum_probs=164.7

Q ss_pred             EEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECC
Q 040307           78 AFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDID  154 (339)
Q Consensus        78 ~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~  154 (339)
                      .|.+++.    .++++++ + .|.+||..+++  ....+..+.     ..+ .++|+| +++++++++. ++.|.+||+.
T Consensus         4 ~~~~~~~----~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~-----~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~   70 (331)
T 3u4y_A            4 MFQTTSN----FGIVVEQHLRRISFFSTDTLE--ILNQITLGY-----DFV-DTAITS-DCSNVVVTSDFCQTLVQIETQ   70 (331)
T ss_dssp             ---CCCC----EEEEEEGGGTEEEEEETTTCC--EEEEEECCC-----CEE-EEEECS-SSCEEEEEESTTCEEEEEECS
T ss_pred             eEcCCCC----EEEEEecCCCeEEEEeCcccc--eeeeEEccC-----Ccc-eEEEcC-CCCEEEEEeCCCCeEEEEECC
Confidence            3555552    5566665 3 99999999887  444444433     556 999998 8886666555 8999999999


Q ss_pred             CCee-eeeeeccCCceeEEEec-CCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307          155 REIL-ETQLVAHDREVYDISWG-GFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       155 ~~~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                      +++. ...+..+..+..+++|+ ++++++++..++   .|.+||+.+++....+..    ......++|+| ++++++++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~sp-dg~~l~~~  145 (331)
T 3u4y_A           71 LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISP-NGNGLILI  145 (331)
T ss_dssp             SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECT-TSSCEEEE
T ss_pred             CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECC-CCCEEEEE
Confidence            9887 66776666666559999 788888555443   899999998875444332    24578999999 78777776


Q ss_pred             eeCCCe-EEEEecCCCCCce---EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307          230 GMDSNK-VVVLDIRFPTNPV---VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL  305 (339)
Q Consensus       230 ~~d~~~-i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  305 (339)
                      +.+... +.+|++...+...   ............++|+|++..+++++..++.|.+||+...+          ...+..
T Consensus       146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~----------~~~~~~  215 (331)
T 3u4y_A          146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE----------NITLLN  215 (331)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT----------SCEEEE
T ss_pred             ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc----------ccceee
Confidence            666555 9999998644321   12223345689999999994345555678999999998876          101133


Q ss_pred             eecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                      .......+..++|+|+|+++++++ .++.|.+|++
T Consensus       216 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          216 AVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             eccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            344556788999999999776654 5778999874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=2.7e-22  Score=174.01  Aligned_cols=204  Identities=12%  Similarity=0.102  Sum_probs=148.8

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcc--------eeEEEeecCCCccCCCCEEEEEEcCCCCCEEE--
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRT--------ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA--  140 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~--  140 (339)
                      ..++.+++++++     .++++++. .+++|+......        .............+...|++++|+| ++++|+  
T Consensus        37 ~~~n~lavs~~~-----~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~  110 (434)
T 2oit_A           37 ERSSLLAVSNKY-----GLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSAC  110 (434)
T ss_dssp             SCCBCEEEETTT-----TEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred             CCccEEEEecCC-----CEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEE
Confidence            458999999998     78888774 888887642110        0111110000001126799999998 899999  


Q ss_pred             --EEeCCCeEEEEECCCC--------ee---eeeeeccCCceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEe
Q 040307          141 --TCSVDTTCVIWDIDRE--------IL---ETQLVAHDREVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYE  205 (339)
Q Consensus       141 --~~~~d~~v~i~d~~~~--------~~---~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  205 (339)
                        +++.|+.|++||++++        +.   +..+.+|...|.+++|+ + +++|++++.||+|++||+++...... ..
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-~~  189 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA-TL  189 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE-EE
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee-cc
Confidence              7889999999998654        21   34556799999999999 4 78999999999999999998853322 22


Q ss_pred             CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------CCCeeEEEeccCCCCeEEE-EeCC
Q 040307          206 NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------EGSVNGISWAPLYGRRLCS-VADD  277 (339)
Q Consensus       206 ~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~-~~~d  277 (339)
                        .|...+.+++|+| ++++|++|+.|+. |++||++  ......+..|       ...|.+++|++++ .++++ .+.|
T Consensus       190 --~~~~~v~~v~wsp-dg~~lasgs~dg~-v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~d  262 (434)
T 2oit_A          190 --PSTVAVTSVCWSP-KGKQLAVGKQNGT-VVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAAD  262 (434)
T ss_dssp             --CGGGCEEEEEECT-TSSCEEEEETTSC-EEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETT
T ss_pred             --CCCCceeEEEEcC-CCCEEEEEcCCCc-EEEEccC--CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCC
Confidence              2567899999999 7999999999999 9999998  3344444433       2379999999987 45543 4455


Q ss_pred             Cc------EEEEEecCCC
Q 040307          278 SR------ALIWEVVGPG  289 (339)
Q Consensus       278 g~------v~iwd~~~~~  289 (339)
                      |.      +++|++...+
T Consensus       263 g~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          263 GTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             CCSSSCCEEEEEECCCTT
T ss_pred             CccCCCCceEEEEeccCC
Confidence            43      8999998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=2.2e-20  Score=158.64  Aligned_cols=279  Identities=10%  Similarity=-0.013  Sum_probs=177.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      +...+..++|+|+   +++|++++..++.++.|.+|+++..++........ ..+...+..+++  ++     ++|++++
T Consensus        48 ~~~~p~~l~~spd---g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg-----~~l~~~~  116 (361)
T 3scy_A           48 EVANPSYLIPSAD---GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NG-----KNIVTAN  116 (361)
T ss_dssp             ECSCCCSEEECTT---SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CS-----SEEEEEE
T ss_pred             cCCCCceEEECCC---CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CC-----CEEEEEE
Confidence            5667888999999   99999988211123899999998876655442222 234556778888  66     5555443


Q ss_pred             --C-cEEEEeecCCc-ceeEEEeecCCC------ccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCee------
Q 040307           96 --D-SLRLWEIHDDR-TELKSLLNSNKT------SEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREIL------  158 (339)
Q Consensus        96 --~-~i~iw~~~~~~-~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~------  158 (339)
                        + .|.+|++.... .........+..      ......+.+++|+| +++++++++ .++.|.+|++.....      
T Consensus       117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~  195 (361)
T 3scy_A          117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK  195 (361)
T ss_dssp             TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred             CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence              3 99999997543 111111111110      01113468899998 888666555 488999998875431      


Q ss_pred             e-------eeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCccee--eEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          159 E-------TQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERST--IIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       159 ~-------~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      +       .........+..++|+ +++++++++ .++.|.+||+.++....  .+...+.+......++|+| ++++|+
T Consensus       196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~  274 (361)
T 3scy_A          196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLY  274 (361)
T ss_dssp             CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEE
T ss_pred             eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEE
Confidence            1       1112344567899999 787777666 68999999998664321  1222222334578999998 889887


Q ss_pred             EEeeC--CCeEEEEecCCC-CC--ceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307          228 TVGMD--SNKVVVLDIRFP-TN--PVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDV  301 (339)
Q Consensus       228 ~~~~d--~~~i~i~d~~~~-~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~  301 (339)
                      ++..+  +. |.+|++... +.  .+..+.. ...+..++|+|++ ++|++++ .++.|.+|++.....         .+
T Consensus       275 v~~~~~~~~-i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g---------~~  342 (361)
T 3scy_A          275 ASNRLKADG-VAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATG---------LL  342 (361)
T ss_dssp             EEECSSSCE-EEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTC---------CE
T ss_pred             EECCCCCCE-EEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCC---------cE
Confidence            77765  55 999999631 22  3334444 5578899999999 5777766 678999987764330         01


Q ss_pred             cceeeecccceeEEEEec
Q 040307          302 EPELCYQSMAEINVVRWS  319 (339)
Q Consensus       302 ~~~~~~~~~~~i~~~~~~  319 (339)
                      .......+...+.++.|.
T Consensus       343 ~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          343 TDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EECSCCEECSSEEEEEEE
T ss_pred             eecceeeeCCCCeEEEEc
Confidence            111111234568888886

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.8e-21  Score=164.23  Aligned_cols=278  Identities=10%  Similarity=0.045  Sum_probs=175.9

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEeC-C-cE
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATSG-D-SL   98 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~~-~-~i   98 (339)
                      .++++++   +.++++++    .++.|.+|+..  +++...  .+..+....+..++|+|++     + +++++. + .|
T Consensus         4 g~~~~~~---~~~~v~~~----~~~~v~~~d~~--~~~~~~--~~~~~~~~~~~~~~~s~dg-----~~~~v~~~~~~~i   67 (349)
T 1jmx_B            4 GPALKAG---HEYMIVTN----YPNNLHVVDVA--SDTVYK--SCVMPDKFGPGTAMMAPDN-----RTAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCCTT---CEEEEEEE----TTTEEEEEETT--TTEEEE--EEECSSCCSSCEEEECTTS-----SEEEEEETTTTEE
T ss_pred             cccccCC---CEEEEEeC----CCCeEEEEECC--CCcEEE--EEecCCCCCCceeEECCCC-----CEEEEEeCCCCcE
Confidence            4567788   88899988    79999997654  334333  2222222368899999999     5 445554 3 99


Q ss_pred             EEEeecCCcceeEEEeecCCC-ccCCCCEEEEEEcCCCCCEEEEEeCC------------CeEEEEECCCCee---eeee
Q 040307           99 RLWEIHDDRTELKSLLNSNKT-SEFSSAITSFDWAGFDTRRVATCSVD------------TTCVIWDIDREIL---ETQL  162 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d------------~~v~i~d~~~~~~---~~~~  162 (339)
                      .+||+.+++  ....+..... ......+..++|+| ++++|++++.+            +.|.+||+.+++.   +..+
T Consensus        68 ~~~d~~t~~--~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           68 YGIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             EEEETTTTE--EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             EEEeCCCCc--EEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence            999998876  4444442210 00002367899998 99999988865            8999999988543   2333


Q ss_pred             eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC-C----------------CC----CeEEEEEec
Q 040307          163 VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV-Q----------------DC----PLLRLEWNK  220 (339)
Q Consensus       163 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~----------------~~----~v~~~~~~p  220 (339)
                      . +...+.+++|+ +++ +++++  +.|.+||+.+++....+..... .                ..    ....+++++
T Consensus       145 ~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (349)
T 1jmx_B          145 P-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK  220 (349)
T ss_dssp             E-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred             c-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence            3 34468899999 677 55554  3499999988774443321100 0                00    233455554


Q ss_pred             CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          221 ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       221 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                       ++............+..+|..........+..+...+..++|+| ++ ++++++  ++.|.+||+.+.+          
T Consensus       221 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~----------  286 (349)
T 1jmx_B          221 -DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRK----------  286 (349)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTE----------
T ss_pred             -CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCe----------
Confidence             22111000001110233555442222223333566788999999 98 577777  8899999998866          


Q ss_pred             cccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          300 DVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                         ..........+.+++|+|+++.|++++.++.|++|++
T Consensus       287 ---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          287 ---LIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             ---EEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ---EEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEec
Confidence               3333334456789999999998888888999999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=1e-20  Score=160.88  Aligned_cols=281  Identities=9%  Similarity=0.034  Sum_probs=180.5

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeec-CCccee
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIH-DDRTEL  110 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~-~~~~~~  110 (339)
                      ..|++|++.  .++.|.+|+++..++.+.............+..++|+|++     ++|++++. .|.+|+++ +++...
T Consensus         3 ~~~~vg~~~--~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg-----~~l~~~~~~~v~~~~~~~~g~~~~   75 (365)
T 1jof_A            3 HHLMIGTWT--PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-----KNIYGAAMKKWSSFAVKSPTEIVH   75 (365)
T ss_dssp             EEEEEEESS--SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-----SEEEEEEBTEEEEEEEEETTEEEE
T ss_pred             EEEEEEEcc--CCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC-----CEEEEEccceEEEEEECCCCCEEE
Confidence            356777731  1257999888877776654222212344578899999999     77776664 99999997 665222


Q ss_pred             EEEeecCCCccCCCCEEEEEEcCCCCCE--EEEEe-------------CCCeEEEEECC-CCeeeeeee----ccCCcee
Q 040307          111 KSLLNSNKTSEFSSAITSFDWAGFDTRR--VATCS-------------VDTTCVIWDID-REILETQLV----AHDREVY  170 (339)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l~~~~-------------~d~~v~i~d~~-~~~~~~~~~----~~~~~v~  170 (339)
                      ......+      .....++|+| ++++  ++++.             .++.+.+|++. +++....+.    .+...+.
T Consensus        76 ~~~~~~~------g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~  148 (365)
T 1jof_A           76 EASHPIG------GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH  148 (365)
T ss_dssp             EEEEECC------SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred             eeEeecC------CCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence            2121111      1244588998 8884  44553             68999999997 455443333    2456789


Q ss_pred             EEEec-CCcEEEEEeC-CCcEEEEECC-CCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-C
Q 040307          171 DISWG-GFNVFASVSG-DCSVRVFDLR-DKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP-T  245 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~-d~~i~i~d~~-~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~-~  245 (339)
                      +++|+ ++++++++.. ++.|++||+. +++.... ....+.+...+..++|+| +++++++++.....|.+|++... +
T Consensus       149 ~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g  227 (365)
T 1jof_A          149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCC
Confidence            99999 7887777654 6799999998 5543211 122111245689999998 88888887764334999987531 2


Q ss_pred             Cce---EEEec-------CCC------CeeEEE-eccCCCCeEEEEeC-CC-----cEEEEEecCCCCCCCCCCCCCccc
Q 040307          246 NPV---VVLSK-------HEG------SVNGIS-WAPLYGRRLCSVAD-DS-----RALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       246 ~~~---~~~~~-------~~~------~v~~~~-~~p~~~~~l~~~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                      +..   ..+..       |..      .+..++ |+|+| ++|+++.. ++     .|.+|++....          .+.
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g----------~~~  296 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCG----------SIE  296 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTS----------CEE
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCC----------CEE
Confidence            321   12221       121      488999 99999 57766553 23     89999997422          011


Q ss_pred             cee--eecccceeEEEEecC---CCCceEEEec-CCeEEEEeC
Q 040307          303 PEL--CYQSMAEINVVRWSP---LELDWIAIAF-VNKLQLLKV  339 (339)
Q Consensus       303 ~~~--~~~~~~~i~~~~~~p---~~~~l~~~~~-d~~v~~w~v  339 (339)
                      ...  ...+...+..++|+|   +|++|++++. ++.|++|++
T Consensus       297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            111  222445577899999   8988887775 589999974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=1.4e-20  Score=158.97  Aligned_cols=258  Identities=11%  Similarity=0.065  Sum_probs=167.7

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..+...+..++|+|+   ++ |++++. .+.++.|.+|+++.  +........ ..+...+..++|+|++     ++|++
T Consensus        36 ~~~~~~p~~~a~spd---g~-l~~~~~-~~~~~~v~~~~~~~--g~~~~~~~~-~~~~~~p~~~a~spdg-----~~l~~  102 (347)
T 3hfq_A           36 LAATQNPTYLALSAK---DC-LYSVDK-EDDEGGIAAWQIDG--QTAHKLNTV-VAPGTPPAYVAVDEAR-----QLVYS  102 (347)
T ss_dssp             EEECSCCCCEEECTT---CE-EEEEEE-ETTEEEEEEEEEET--TEEEEEEEE-EEESCCCSEEEEETTT-----TEEEE
T ss_pred             eeccCCcceEEEccC---Ce-EEEEEe-cCCCceEEEEEecC--CcEEEeeee-ecCCCCCEEEEECCCC-----CEEEE
Confidence            344567888999999   88 555541 01268999988843  333221122 3467789999999999     76665


Q ss_pred             eC--C-cEEEEeecC-CcceeEEEeecCCCc----cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeee--eee
Q 040307           94 SG--D-SLRLWEIHD-DRTELKSLLNSNKTS----EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILE--TQL  162 (339)
Q Consensus        94 ~~--~-~i~iw~~~~-~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~--~~~  162 (339)
                      ++  + .|.+|++.. +....+..+......    .....+.+++|+| +++++++...++.|.+|++. +++..  ..+
T Consensus       103 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~  181 (347)
T 3hfq_A          103 ANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL  181 (347)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             EeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence            54  3 899999964 333333333221100    0113588999998 88877777778999999998 45422  222


Q ss_pred             ec-cCCceeEEEec-CCcEEEE-EeCCCcEEEEECCC--Cccee--eEEeCCC---CCCCeEEEEEecCCCCeEEEEee-
Q 040307          163 VA-HDREVYDISWG-GFNVFAS-VSGDCSVRVFDLRD--KERST--IIYENPV---QDCPLLRLEWNKADPRFMATVGM-  231 (339)
Q Consensus       163 ~~-~~~~v~~~~~~-~~~~l~~-~~~d~~i~i~d~~~--~~~~~--~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~-  231 (339)
                      .. ....+..++|+ +++++++ ...++.|.+|++..  ++...  .....+.   ....+..++|+| ++++|+++.. 
T Consensus       182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~  260 (347)
T 3hfq_A          182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRG  260 (347)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEET
T ss_pred             EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCC
Confidence            22 23367889999 7775554 56788999999875  33111  1111110   013588899998 8887765554 


Q ss_pred             CCCeEEEEecCCCC--CceEEEecCCCCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCC
Q 040307          232 DSNKVVVLDIRFPT--NPVVVLSKHEGSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGP  288 (339)
Q Consensus       232 d~~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~  288 (339)
                      ++. |.+||+...+  ..+..+..+...+..++|+|++ ++|++++. ++.|.+|+++..
T Consensus       261 ~~~-v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          261 YNT-LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             TTE-EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTT
T ss_pred             CCE-EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCC
Confidence            565 9999987422  3345555666678999999999 57777665 589999977643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=6.9e-21  Score=161.00  Aligned_cols=236  Identities=11%  Similarity=0.050  Sum_probs=172.4

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeC--------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSG--------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV  139 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~--------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  139 (339)
                      .....+..++|+|++     +.+++++        + .|.+||..+++  ....+...      ..+..++|+| +++++
T Consensus        38 ~~~~~~~~~~~s~dg-----~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~------~~~~~~~~s~-dg~~l  103 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQE-----NALWLATSQSRKLDKGGVVYRLDPVTLE--VTQAIHND------LKPFGATINN-TTQTL  103 (353)
T ss_dssp             EEESSEEEEEEETTT-----TEEEEEECCCTTTEESEEEEEECTTTCC--EEEEEEES------SCCCSEEEET-TTTEE
T ss_pred             hhccCccceEECCCC-----CEEEEEcCCCcCCCCCccEEEEcCCCCe--EEEEEecC------CCcceEEECC-CCCEE
Confidence            345668899999999     5555544        3 79999999887  55555543      3467899998 77754


Q ss_pred             -EEEeCCCeEEEEECCCCeeeeeeeccCCc---------eeEEEec-CCcEEEEEe--CCCcEEEEECCCCcceeeEEeC
Q 040307          140 -ATCSVDTTCVIWDIDREILETQLVAHDRE---------VYDISWG-GFNVFASVS--GDCSVRVFDLRDKERSTIIYEN  206 (339)
Q Consensus       140 -~~~~~d~~v~i~d~~~~~~~~~~~~~~~~---------v~~~~~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~  206 (339)
                       ++...++.|.+||+.+++.+..+..+...         +.+++|+ +++.+++++  .++.|.+||+.+.+....+. .
T Consensus       104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~  182 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-N  182 (353)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-C
T ss_pred             EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-C
Confidence             55556799999999999887777654322         6889999 677666665  47889999999887544432 1


Q ss_pred             CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec----CCCCeeEEEeccCCCCeEEEEe-CCCcEE
Q 040307          207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK----HEGSVNGISWAPLYGRRLCSVA-DDSRAL  281 (339)
Q Consensus       207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~-~dg~v~  281 (339)
                        +...+..++|+| +++.+++++.++. |.+||... .+.+..+..    +...+..++|+|++. .+++++ .++.|.
T Consensus       183 --~~~~~~~~~~s~-dg~~l~~~~~~~~-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~v~  256 (353)
T 3vgz_A          183 --TGKMSTGLALDS-EGKRLYTTNADGE-LITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQ-RAFITDSKAAEVL  256 (353)
T ss_dssp             --CCTTCCCCEEET-TTTEEEEECTTSE-EEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTT-EEEEEESSSSEEE
T ss_pred             --CCCccceEEECC-CCCEEEEEcCCCe-EEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCC-EEEEEeCCCCEEE
Confidence              234578899998 8888888888887 99999987 555555543    455688899999995 555544 569999


Q ss_pred             EEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307          282 IWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       282 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                      +||+...+             ......... ...++|+|+++.+++++ .++.|.+|++
T Consensus       257 ~~d~~~~~-------------~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          257 VVDTRNGN-------------ILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             EEETTTCC-------------EEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCc-------------EEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            99998876             332222222 25799999998766655 7899999974

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=1.1e-20  Score=158.61  Aligned_cols=247  Identities=9%  Similarity=-0.025  Sum_probs=173.5

Q ss_pred             CCceeeeeeccC---CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC----CCCceEEEE
Q 040307            7 KKPGVHTYMAQW---PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH----PYTPTNIAF   79 (339)
Q Consensus         7 ~~~~~~~~~~~~---~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~   79 (339)
                      +++.+..+....   .+..++|+|+   ++.++++..   .++.|.+|+...  .+...  .+...+    ...+..++|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~v~~~---~~~~v~~~d~~~--~~~~~--~~~~~~~~~~~~~~~~~~~   89 (337)
T 1pby_B           20 KMAVDKVITIADAGPTPMVPMVAPG---GRIAYATVN---KSESLVKIDLVT--GETLG--RIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTT---SSEEEEEET---TTTEEEEEETTT--CCEEE--EEECCBTTEEEECTTCEEE
T ss_pred             CCcEEEEEEcCCCCCCccceEEcCC---CCEEEEEeC---CCCeEEEEECCC--CCeEe--eEEcCCcccccccccceEE
Confidence            345566666665   6899999999   876655442   578999977653  33332  222222    226889999


Q ss_pred             cCCCCCCCCCeEEEe-------------CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           80 FPSEETLNPDIVATS-------------GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        80 ~~~~~~~~~~~la~~-------------~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      +|++     +.|+++             .+ .|.+||+.+++  ....+...      ..+.+++|+| ++++|+++  +
T Consensus        90 s~dg-----~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~------~~~~~~~~s~-dg~~l~~~--~  153 (337)
T 1pby_B           90 SPDG-----KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFEAP------RQITMLAWAR-DGSKLYGL--G  153 (337)
T ss_dssp             CTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEECC------SSCCCEEECT-TSSCEEEE--S
T ss_pred             CCCC-----CEEEEEecccccccccccccCceEEEEECCCCc--EEEEEeCC------CCcceeEECC-CCCEEEEe--C
Confidence            9999     677666             34 99999998876  44555432      4577899998 88888887  6


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC-C-----------------------cEEEEECCCCcce
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD-C-----------------------SVRVFDLRDKERS  200 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-~-----------------------~i~i~d~~~~~~~  200 (339)
                      +.|.+||+.+++....+..+.. ...+.|+ ++..++..+.. +                       .|.+||+.+.+..
T Consensus       154 ~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  232 (337)
T 1pby_B          154 RDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence            8999999999987776654331 1123566 44444333322 2                       4789999988754


Q ss_pred             eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE
Q 040307          201 TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA  280 (339)
Q Consensus       201 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  280 (339)
                      .....  .+...+..++|+| ++++++++  ++. |.+||+.. .+.+..+.. ...+.+++|+|++ ++|++++.++.|
T Consensus       233 ~~~~~--~~~~~~~~~~~s~-dg~~l~~~--~~~-v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~i  303 (337)
T 1pby_B          233 MREVR--IMDVFYFSTAVNP-AKTRAFGA--YNV-LESFDLEK-NASIKRVPL-PHSYYSVNVSTDG-STVWLGGALGDL  303 (337)
T ss_dssp             EEEEE--ECSSCEEEEEECT-TSSEEEEE--ESE-EEEEETTT-TEEEEEEEC-SSCCCEEEECTTS-CEEEEESBSSEE
T ss_pred             EeecC--CCCCceeeEEECC-CCCEEEEe--CCe-EEEEECCC-CcCcceecC-CCceeeEEECCCC-CEEEEEcCCCcE
Confidence            22222  2446788999998 88888887  566 99999986 455555554 4568899999999 588888889999


Q ss_pred             EEEEecCCC
Q 040307          281 LIWEVVGPG  289 (339)
Q Consensus       281 ~iwd~~~~~  289 (339)
                      .+||+.+.+
T Consensus       304 ~v~d~~~~~  312 (337)
T 1pby_B          304 AAYDAETLE  312 (337)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECcCCc
Confidence            999998877

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=1.3e-20  Score=161.56  Aligned_cols=276  Identities=8%  Similarity=-0.013  Sum_probs=177.2

Q ss_pred             EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEE
Q 040307           23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRL  100 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~i  100 (339)
                      .+||||   +++||+++.   .++...||.++..+++...   +...+...+..+.|+|++     +.|+.++ + .|++
T Consensus        41 ~~~SpD---g~~l~~~~~---~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg-----~~l~~~~~~~~l~~  106 (388)
T 3pe7_A           41 KCFTRD---GSKLLFGGA---FDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDD-----DALFYVKDGRNLMR  106 (388)
T ss_dssp             CCBCTT---SCEEEEEEC---TTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTS-----SEEEEEETTTEEEE
T ss_pred             ccCCCC---CCEEEEEEc---CCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCC-----CEEEEEeCCCeEEE
Confidence            789999   999999882   2676556556666665543   113455555678899999     7777766 4 8999


Q ss_pred             EeecCCcceeEEEeecCCCccCCCCEEEEE--EcCCCCCEEEEE----------------------eCCCeEEEEECCCC
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFSSAITSFD--WAGFDTRRVATC----------------------SVDTTCVIWDIDRE  156 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~----------------------~~d~~v~i~d~~~~  156 (339)
                      ||+.+++  ....+..+.     ..+....  ++| ++.+++..                      ..+..|.+||+.++
T Consensus       107 ~d~~~g~--~~~~~~~~~-----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          107 VDLATLE--ENVVYQVPA-----EWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             EETTTCC--EEEEEECCT-----TEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             EECCCCc--ceeeeechh-----hcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            9999987  333333333     3333333  477 88887743                      24478999999988


Q ss_pred             eeeeeeeccCCceeEEEecC--CcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          157 ILETQLVAHDREVYDISWGG--FNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      +.. .+..+...+..++|+|  ++.|+.+..+      ..|.++|+........ ... .....+..++|+| +|+.|+.
T Consensus       179 ~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~-~~~~~~~~~~~sp-dg~~l~~  254 (388)
T 3pe7_A          179 EST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV-KTH-AEGESCTHEFWVP-DGSALVY  254 (388)
T ss_dssp             CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES-CCC-CTTEEEEEEEECT-TSSCEEE
T ss_pred             ceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe-eeC-CCCcccccceECC-CCCEEEE
Confidence            644 4445667789999996  6677776653      3788888776543222 221 1113577889999 7877655


Q ss_pred             EeeC-CC---eEEEEecCCCCC-ceEEEecCCC---CeeEEEeccCCCCeEEEE---------eCCCcEEEEEecCCCCC
Q 040307          229 VGMD-SN---KVVVLDIRFPTN-PVVVLSKHEG---SVNGISWAPLYGRRLCSV---------ADDSRALIWEVVGPGYR  291 (339)
Q Consensus       229 ~~~d-~~---~i~i~d~~~~~~-~~~~~~~~~~---~v~~~~~~p~~~~~l~~~---------~~dg~v~iwd~~~~~~~  291 (339)
                      .+.. +.   .|++||+..... .+..+..+..   ....++|+|+|. .|+..         ..+..|++||+....  
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~~--  331 (388)
T 3pe7_A          255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS-DAPVDVQDDSGYKIENDPFLYVFNMKNGT--  331 (388)
T ss_dssp             EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC-CC------------CCCCEEEEEETTTTE--
T ss_pred             EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC-cceeEeeeccccccCCCCEEEEEeccCCc--
Confidence            4443 32   299999986331 2222222100   122347999995 55533         456689999998866  


Q ss_pred             CCCCCCCCcccceeeecccc-----------eeEEEEecCCCCceEEEe-cCCeEEEEe
Q 040307          292 SGNGGPSGDVEPELCYQSMA-----------EINVVRWSPLELDWIAIA-FVNKLQLLK  338 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~p~~~~l~~~~-~d~~v~~w~  338 (339)
                                 ...+..+..           .+..++|+|+|+.|+.++ .++...||.
T Consensus       332 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~  379 (388)
T 3pe7_A          332 -----------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL  379 (388)
T ss_dssp             -----------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             -----------eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence                       333333443           478899999999877655 577777775

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=3e-21  Score=178.70  Aligned_cols=276  Identities=10%  Similarity=0.030  Sum_probs=180.4

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC---CceEEEEcCCCCCCCCCeEEEeC-
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY---TPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      -.+++|+|+   +++++.+.     ++.|++|+....  +...  .+ ..+..   .+.+++||||+     +.|+.++ 
T Consensus        18 ~~~~~~s~d---g~~~~~~~-----d~~i~~~~~~~g--~~~~--~~-~~~~~~~~~~~~~~~SpDg-----~~la~~~~   79 (719)
T 1z68_A           18 TFFPNWISG---QEYLHQSA-----DNNIVLYNIETG--QSYT--IL-SNRTMKSVNASNYGLSPDR-----QFVYLESD   79 (719)
T ss_dssp             CCCCEESSS---SEEEEECT-----TSCEEEEESSSC--CEEE--EE-CHHHHHTTTCSEEEECTTS-----SEEEEEEE
T ss_pred             CCccEECCC---CeEEEEcC-----CCCEEEEEcCCC--cEEE--EE-ccccccccceeeEEECCCC-----CeEEEEec
Confidence            348899999   87666554     899999776543  3332  11 22222   48999999999     7777653 


Q ss_pred             ---------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-ec
Q 040307           96 ---------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VA  164 (339)
Q Consensus        96 ---------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~  164 (339)
                               + .|++||+++++......+.        ..+..++||| +++.|+++. ++.|++||+.+++..... .+
T Consensus        80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~  149 (719)
T 1z68_A           80 YSKLWRYSYTATYYIYDLSNGEFVRGNELP--------RPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNG  149 (719)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCCC--------SSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCC
T ss_pred             CceeEEeecceEEEEEECCCCccccceecC--------cccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCC
Confidence                     3 8999999888620001221        4578899999 999999986 789999999887754432 22


Q ss_pred             cCCce-----------------eEEEec-CCcEEEEEeCCC----------------------------------cEEEE
Q 040307          165 HDREV-----------------YDISWG-GFNVFASVSGDC----------------------------------SVRVF  192 (339)
Q Consensus       165 ~~~~v-----------------~~~~~~-~~~~l~~~~~d~----------------------------------~i~i~  192 (339)
                      +...+                 .+++|+ +++.|++++.|.                                  .|++|
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            22222                 489999 789999887652                                  78899


Q ss_pred             ECCCCcce--eeEEe---CCCCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEe----cCCCCCceEEE----ecCCC
Q 040307          193 DLRDKERS--TIIYE---NPVQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLD----IRFPTNPVVVL----SKHEG  256 (339)
Q Consensus       193 d~~~~~~~--~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d----~~~~~~~~~~~----~~~~~  256 (339)
                      |+.+++..  ..+..   ...+...+.+++|+| +++++++.....   ..|.+||    ... ++....+    ..|..
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~  307 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTG  307 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSS
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCc
Confidence            99887632  11110   012556789999999 677776644322   1388899    654 3333333    45677


Q ss_pred             Cee-----EEEeccCCCCeEE-EEeCCCc--EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE
Q 040307          257 SVN-----GISWAPLYGRRLC-SVADDSR--ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI  328 (339)
Q Consensus       257 ~v~-----~~~~~p~~~~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  328 (339)
                      .+.     .+.|+|+|..+++ +...+|.  |.+||+....             ...+..+...+..+.++ +++.++..
T Consensus       308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-------------~~~lt~~~~~v~~~~~~-d~~~i~~~  373 (719)
T 1z68_A          308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-------------AIQITSGKWEAINIFRV-TQDSLFYS  373 (719)
T ss_dssp             CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-------------CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred             eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-------------eEecccCceEEEEEEEE-eCCEEEEE
Confidence            776     8999999953333 3445665  5555554433             33333445567777777 77777766


Q ss_pred             ecC-----CeEEEEeC
Q 040307          329 AFV-----NKLQLLKV  339 (339)
Q Consensus       329 ~~d-----~~v~~w~v  339 (339)
                      +.+     +..++|.+
T Consensus       374 ~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          374 SNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             ESCGGGCTTCBEEEEE
T ss_pred             EecCCCCCceEEEEEE
Confidence            654     77888863

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=6e-21  Score=172.39  Aligned_cols=230  Identities=10%  Similarity=0.050  Sum_probs=161.7

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC--
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV--  144 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  144 (339)
                      +..+|++++|+|||     +.||.++  + +++||++++++  .......+.     ..+..+.|+| + +++++++.  
T Consensus        20 ~~~~~~~~~~~~DG-----~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~-----~~~~~~~~sp-d-~~l~~~~~~~   85 (582)
T 3o4h_A           20 IAVEKYSLQGVVDG-----DKLLVVGFSEGSVNAYLYDGGE--TVKLNREPI-----NSVLDPHYGV-G-RVILVRDVSK   85 (582)
T ss_dssp             HHSCEEEEEEEETT-----TEEEEEEEETTEEEEEEEETTE--EEECCSSCC-----SEECEECTTC-S-EEEEEEECST
T ss_pred             hccchheeecCCCC-----CeEEEEEccCCceeEEEEcCCC--cEeeecccc-----cccccccCCC-C-eEEEEeccCC
Confidence            35579999999999     7888765  4 99999997664  333333322     4788999998 7 77777765  


Q ss_pred             -CCeEEEEECCC---CeeeeeeeccCCceeEEEec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307          145 -DTTCVIWDIDR---EILETQLVAHDREVYDISWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       145 -d~~v~i~d~~~---~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  218 (339)
                       +....+|.+..   +... .+... ..+...+|+ ++ ..+++.+.++.+.+||+.+++........    .  .+++|
T Consensus        86 g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~----~--~~~~~  157 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP----G--FGFVS  157 (582)
T ss_dssp             TSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES----S--CEEEE
T ss_pred             CCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC----C--ceEEE
Confidence             45555655432   2222 33222 223455666 44 34444445556669999887644333222    1  78999


Q ss_pred             ecCCCCeEEEEeeC----CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC--cEEEEEecCCCCCC
Q 040307          219 NKADPRFMATVGMD----SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS--RALIWEVVGPGYRS  292 (339)
Q Consensus       219 ~p~~~~~l~~~~~d----~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~iwd~~~~~~~~  292 (339)
                      +| +|+.|++++.+    .. |++||+.. ++ ...+..|...+..++|+||| +.|+++..++  .|++||+..++   
T Consensus       158 sp-DG~~la~~~~~~~~~~~-i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~---  229 (582)
T 3o4h_A          158 DI-RGDLIAGLGFFGGGRVS-LFTSNLSS-GG-LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGS---  229 (582)
T ss_dssp             EE-ETTEEEEEEEEETTEEE-EEEEETTT-CC-CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCC---
T ss_pred             CC-CCCEEEEEEEcCCCCeE-EEEEcCCC-CC-ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCc---
Confidence            99 99999988777    55 99999876 33 45778888899999999999 5888888888  89999998876   


Q ss_pred             CCCCCCCcccceeeecccceeEEEE--------ecCCCCceEEEecCCeEEEEeC
Q 040307          293 GNGGPSGDVEPELCYQSMAEINVVR--------WSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~--------~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                                +.....+...+..++        |+|+|..+++++.|+.+++|++
T Consensus       230 ----------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          230 ----------VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ----------EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ----------EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                      334445555666666        9999965667889999999975

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=2.1e-20  Score=173.08  Aligned_cols=288  Identities=10%  Similarity=0.049  Sum_probs=182.7

Q ss_pred             CeeEEEeeecCCcccEEEEeeecc-----ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLE-----DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .+.+++||||   |++||+++...     ..++.|++|+++.  ++...    .......+..++||||+     +.||.
T Consensus        61 ~~~~~~~SpD---g~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~----~~~l~~~~~~~~~SPDG-----~~la~  126 (719)
T 1z68_A           61 NASNYGLSPD---RQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVR----GNELPRPIQYLCWSPVG-----SKLAY  126 (719)
T ss_dssp             TCSEEEECTT---SSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECC----SSCCCSSBCCEEECSST-----TCEEE
T ss_pred             ceeeEEECCC---CCeEEEEecCceeEEeecceEEEEEECCC--Ccccc----ceecCcccccceECCCC-----CEEEE
Confidence            4899999999   99999987200     0158899976653  33310    01113568999999999     78888


Q ss_pred             eCC-cEEEEeecCCcceeEEEe-ecCCCc---cC---------CCCEEEEEEcCCCCCEEEEEeCCC-------------
Q 040307           94 SGD-SLRLWEIHDDRTELKSLL-NSNKTS---EF---------SSAITSFDWAGFDTRRVATCSVDT-------------  146 (339)
Q Consensus        94 ~~~-~i~iw~~~~~~~~~~~~~-~~~~~~---~~---------~~~i~~~~~~~~~~~~l~~~~~d~-------------  146 (339)
                      +.+ .|++|++.+++  ..... .++...   ++         .....+++|+| |++.|++++.|.             
T Consensus       127 ~~~~~i~~~~~~~g~--~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~  203 (719)
T 1z68_A          127 VYQNNIYLKQRPGDP--PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGD  203 (719)
T ss_dssp             EETTEEEEESSTTSC--CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCS
T ss_pred             EECCeEEEEeCCCCC--cEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCC
Confidence            877 99999998876  22221 222100   00         01124899999 999999987652             


Q ss_pred             ---------------------eEEEEECCCCeee--------eeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEE
Q 040307          147 ---------------------TCVIWDIDREILE--------TQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVF  192 (339)
Q Consensus       147 ---------------------~v~i~d~~~~~~~--------~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~  192 (339)
                                           .|++||+.+++..        ..+.+|...+..++|+ ++.++++....    ..|.+|
T Consensus       204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~  283 (719)
T 1z68_A          204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSIC  283 (719)
T ss_dssp             SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEE
T ss_pred             CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEE
Confidence                                 7889999887642        1233577789999999 66666654332    248889


Q ss_pred             E----CCCCcceeeEE---eCCCCCCCeE-----EEEEecCCCCeEEE--EeeCCC-eEEEEecCCCCCceEEEecCCCC
Q 040307          193 D----LRDKERSTIIY---ENPVQDCPLL-----RLEWNKADPRFMAT--VGMDSN-KVVVLDIRFPTNPVVVLSKHEGS  257 (339)
Q Consensus       193 d----~~~~~~~~~~~---~~~~~~~~v~-----~~~~~p~~~~~l~~--~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~  257 (339)
                      |    +.+++......   ..  +...+.     .++|+| +|+.|+.  ...++. .|.+||+.. ++ ...+..+...
T Consensus       284 d~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~-~~-~~~lt~~~~~  358 (719)
T 1z68_A          284 DFREDWQTWDCPKTQEHIEES--RTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTV-EN-AIQITSGKWE  358 (719)
T ss_dssp             EECSSSSSEECCGGGEEEEEC--SSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCS-TT-CEECSCSSSC
T ss_pred             cccCCCCCCceEEEEeccccc--CCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCC-Cc-eEecccCceE
Confidence            9    76665433331   22  344554     789998 7775544  334443 377777765 33 5566666667


Q ss_pred             eeEEEeccCCCCeEEEEeC----CCcEEEEEecCCCCCCCCCCCCCcccceeee----cccceeEEEEecCCCCceEEE-
Q 040307          258 VNGISWAPLYGRRLCSVAD----DSRALIWEVVGPGYRSGNGGPSGDVEPELCY----QSMAEINVVRWSPLELDWIAI-  328 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~p~~~~l~~~-  328 (339)
                      +..+.++ ++..+++++..    ++..++|.+.....         ..++..+.    ++...+..+.|+|+++.++.. 
T Consensus       359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~  428 (719)
T 1z68_A          359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY---------PPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC  428 (719)
T ss_dssp             EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS---------SCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred             EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC---------CCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence            8888877 77444444444    48899999876320         00112111    255678899999999877743 


Q ss_pred             ecC--CeEEEEe
Q 040307          329 AFV--NKLQLLK  338 (339)
Q Consensus       329 ~~d--~~v~~w~  338 (339)
                      +..  ..+.+|+
T Consensus       429 s~~~~p~~~l~d  440 (719)
T 1z68_A          429 YGPGIPISTLHD  440 (719)
T ss_dssp             CCBSSCEEEEEC
T ss_pred             CCCCCCeEEEEE
Confidence            332  3455654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=2.7e-18  Score=146.01  Aligned_cols=246  Identities=7%  Similarity=-0.019  Sum_probs=165.2

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC--eEEEe-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD--IVATS-   94 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~--~la~~-   94 (339)
                      ..+..++|+|+   +++|++++    .+ .|.+|+++. .+....  .......+.+.+++|+|++     +  +++++ 
T Consensus        40 ~~~~~~a~spd---g~~l~~~~----~~-~v~~~~~~~-~g~~~~--~~~~~~~g~~~~~~~spdg-----~~l~~~~~~  103 (365)
T 1jof_A           40 EPISWMTFDHE---RKNIYGAA----MK-KWSSFAVKS-PTEIVH--EASHPIGGHPRANDADTNT-----RAIFLLAAK  103 (365)
T ss_dssp             CCCSEEEECTT---SSEEEEEE----BT-EEEEEEEEE-TTEEEE--EEEEECCSSGGGGCTTSCC-----EEEEEEECS
T ss_pred             CCCcEEEECCC---CCEEEEEc----cc-eEEEEEECC-CCCEEE--eeEeecCCCCccEEECCCC-----CEEEEEEec
Confidence            46889999999   99998888    45 999988763 233322  1111112346779999999     6  34444 


Q ss_pred             -------------CC-cEEEEeecC-CcceeEEEeec----CCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECC
Q 040307           95 -------------GD-SLRLWEIHD-DRTELKSLLNS----NKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDID  154 (339)
Q Consensus        95 -------------~~-~i~iw~~~~-~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~  154 (339)
                                   .+ .+.+|+++. ++  ....+..    +.     ..+.+++|+| ++++++++.. ++.|++||+.
T Consensus       104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~-----~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A          104 QPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQEN-----TGIHGMVFDP-TETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTT-----CCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCC-----CcceEEEECC-CCCEEEEEcCCCCEEEEEEEC
Confidence                         34 899999974 44  2222221    22     5788999998 8988887764 6899999998


Q ss_pred             -CCeee--eeee--ccCCceeEEEec-CCcEEEEEeC-CCcEEEEECC--CCccee---eEEeCCCC----CC------C
Q 040307          155 -REILE--TQLV--AHDREVYDISWG-GFNVFASVSG-DCSVRVFDLR--DKERST---IIYENPVQ----DC------P  212 (339)
Q Consensus       155 -~~~~~--~~~~--~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~~~~~~----~~------~  212 (339)
                       +++..  ..+.  .+...+..++|+ +++++++++. ++.|.+|++.  +++...   .+...+..    ..      .
T Consensus       176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  255 (365)
T 1jof_A          176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY  255 (365)
T ss_dssp             TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred             CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence             66542  2333  235678999999 7878877764 6899999875  333211   12211111    11      4


Q ss_pred             eEEEE-EecCCCCeEEEEeeCCC-----eEEEEecCCCCCceE---EEecCCCCeeEEEecc---CCCCeEEEEeC-CCc
Q 040307          213 LLRLE-WNKADPRFMATVGMDSN-----KVVVLDIRFPTNPVV---VLSKHEGSVNGISWAP---LYGRRLCSVAD-DSR  279 (339)
Q Consensus       213 v~~~~-~~p~~~~~l~~~~~d~~-----~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~p---~~~~~l~~~~~-dg~  279 (339)
                      +..++ |+| ++++|+++..+..     .|.+|++...++...   ....+...+..++|+|   ++ ++|++++. ++.
T Consensus       256 ~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~v~~~~~~~  333 (365)
T 1jof_A          256 RADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGW  333 (365)
T ss_dssp             EEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCE
T ss_pred             cccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-CEEEEEEcCCCe
Confidence            78999 998 8888887765432     399999964344332   2333555678899999   78 58888876 489


Q ss_pred             EEEEEecCCC
Q 040307          280 ALIWEVVGPG  289 (339)
Q Consensus       280 v~iwd~~~~~  289 (339)
                      |.+|++....
T Consensus       334 v~v~~~~~~~  343 (365)
T 1jof_A          334 LEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEchhh
Confidence            9999997654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.85  E-value=7.6e-19  Score=161.09  Aligned_cols=284  Identities=9%  Similarity=-0.021  Sum_probs=180.4

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCce---------EEEEc--CCCC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT---------NIAFF--PSEE   84 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~---------~l~~~--~~~~   84 (339)
                      +...+..++|+++   ..+++...  .+.++...||.+... +....   + ..+...+.         ...|+  ||+ 
T Consensus        22 ~~~~~~~~~~s~~---~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~---l-~~~~~~~~~~~~~~~~~~~~~~~SPDg-   90 (662)
T 3azo_A           22 RSGRPACVGAVGD---EVWWVAPR--PAEAGRATLVRRRAD-GAEES---A-LPAPWNVRNRVFEYSGFPWAGVPRPAG-   90 (662)
T ss_dssp             TCSCCEEEEEETT---EEEEEEEE--TTTTTEEEEEEECTT-SCEEE---S-SCTTCCBCCCGGGTCCCCEEEECCSSS-
T ss_pred             cCCccceeEEcCC---eEEEEecC--cccCCcEEEEEECCC-CCcce---e-CCCCccccccccccCCccceeeeecCC-
Confidence            5678999999988   76666652  115788999887433 32221   1 34555555         56666  999 


Q ss_pred             CCCCCe-EEEeCC---cEEEEeec--C-CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----------Ce
Q 040307           85 TLNPDI-VATSGD---SLRLWEIH--D-DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----------TT  147 (339)
Q Consensus        85 ~~~~~~-la~~~~---~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------~~  147 (339)
                          +. |+.+++   .|.++++.  . ++   ...+.......+...+..++|+| +++.|++++.+          ..
T Consensus        91 ----~~~la~~~~~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           91 ----GPLLVFTHFGDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             ----SCEEEEEBTTTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEE
T ss_pred             ----CeEEEEEECCCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeE
Confidence                66 666654   56666655  2 33   22333310000115788999998 99999998877          58


Q ss_pred             EEEEECCC------Ceeeeeee-ccCCceeEEEec-CCcEEEEEeCC--------CcEEEEECC-CCc--ceeeEEeCCC
Q 040307          148 CVIWDIDR------EILETQLV-AHDREVYDISWG-GFNVFASVSGD--------CSVRVFDLR-DKE--RSTIIYENPV  208 (339)
Q Consensus       148 v~i~d~~~------~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d--------~~i~i~d~~-~~~--~~~~~~~~~~  208 (339)
                      |++||+.+      ++. ..+. .+...+..++|+ ++++|+.++.+        ..|++||+. ++.  ....+...  
T Consensus       163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~--  239 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG--  239 (662)
T ss_dssp             EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred             EEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC--
Confidence            99999987      543 4444 556678889999 78889887755        379999998 451  23333332  


Q ss_pred             CCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCC---------eeEEEeccCCCCeEEEEeCCC
Q 040307          209 QDCPLLRLEWNKADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGS---------VNGISWAPLYGRRLCSVADDS  278 (339)
Q Consensus       209 ~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~---------v~~~~~~p~~~~~l~~~~~dg  278 (339)
                      +...+..++|+| +|++++++..++. .|.+||+.. ++ ...+..+...         +..++|+|++ +++++++. +
T Consensus       240 ~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~-~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~  314 (662)
T 3azo_A          240 PEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPAT-GA-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-G  314 (662)
T ss_dssp             TTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTT-CC-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-S
T ss_pred             CCceEcceEECC-CCeEEEEECCCCCeEEEEEECCC-Cc-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-C
Confidence            356889999999 7777777777764 266666543 33 3333322222         5678999998 69999988 9


Q ss_pred             cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE--EEecCCeEEEEe
Q 040307          279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI--AIAFVNKLQLLK  338 (339)
Q Consensus       279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~--~~~~d~~v~~w~  338 (339)
                      .++||.+....           .....+..+...+..+ |++++..++  +.+.+....+|.
T Consensus       315 ~~~l~~~d~~~-----------~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          315 AAVLGILDPES-----------GELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             SCEEEEEETTT-----------TEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEECCC-----------CcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEE
Confidence            99999766433           0123334456667766 144444433  345555555553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=1.1e-18  Score=161.91  Aligned_cols=250  Identities=11%  Similarity=0.112  Sum_probs=168.8

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----  145 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----  145 (339)
                      .....++.|+|++     ++++++.+.|++|++.+++  ....+.+|....+......+.||| |+++|+.++.+     
T Consensus        16 ~~~~~~~~w~~dg-----~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           16 RLKLYSLRWISDH-----EYLYKQENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCCCEEECSSS-----EEEEEETTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSS
T ss_pred             cccccccEECCCC-----cEEEEcCCcEEEEECCCCc--eEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEE
Confidence            3446789999999     8999883399999999987  556677765333333445689999 99999998876     


Q ss_pred             ----CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe-------
Q 040307          146 ----TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL-------  213 (339)
Q Consensus       146 ----~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v-------  213 (339)
                          +.+.+||+.+++.. .+..+...+..++|| +++.|+.+. ++.|++||+.++.........  +...+       
T Consensus        88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g--~~~~~~~g~~~~  163 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG--KEDIIYNGITDW  163 (740)
T ss_dssp             SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC--BTTTEEESBCCH
T ss_pred             EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC--CccceecCcccc
Confidence                56779999998754 456677889999999 788888875 689999999887643322211  11112       


Q ss_pred             ----------EEEEEecCCCCeEEEEeeCCC-----------------------------------eEEEEecCC---CC
Q 040307          214 ----------LRLEWNKADPRFMATVGMDSN-----------------------------------KVVVLDIRF---PT  245 (339)
Q Consensus       214 ----------~~~~~~p~~~~~l~~~~~d~~-----------------------------------~i~i~d~~~---~~  245 (339)
                                ..+.|+| +|+.||..+.|.+                                   .|++||+..   ..
T Consensus       164 v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~  242 (740)
T 4a5s_A          164 VYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT  242 (740)
T ss_dssp             HHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred             cccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence                      3589999 8999988764432                                   377788875   32


Q ss_pred             C-ceEEEec------CCCCeeEEEeccCCCCeEEEEeC----CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307          246 N-PVVVLSK------HEGSVNGISWAPLYGRRLCSVAD----DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN  314 (339)
Q Consensus       246 ~-~~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  314 (339)
                      . ....+..      |...+..++|+||+ ++++....    +..|++||+.+++....    ......+....+...|.
T Consensus       243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~----~~~~~~l~~~~~~~~v~  317 (740)
T 4a5s_A          243 NATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWN----CLVARQHIEMSTTGWVG  317 (740)
T ss_dssp             CCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEE----ECGGGCEEEECSSSCSS
T ss_pred             cceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccc----eeEEEEeeeccCCceEc
Confidence            1 2334432      67789999999999 56665432    33799999987640000    00001112234554444


Q ss_pred             -----EEEecCCCCceE-EEe-cCCe--EEEEe
Q 040307          315 -----VVRWSPLELDWI-AIA-FVNK--LQLLK  338 (339)
Q Consensus       315 -----~~~~~p~~~~l~-~~~-~d~~--v~~w~  338 (339)
                           .++|+|||+.++ ..+ .+|.  |.+|+
T Consensus       318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence                 789999999776 555 4554  44444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=3.1e-19  Score=153.30  Aligned_cols=274  Identities=9%  Similarity=-0.020  Sum_probs=171.4

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFPSEETLNPDIVATSG-D-   96 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~~~la~~~-~-   96 (339)
                      +.+++|+|+   |++||+...   .++...||.++..+++...   + ..+... ...+.|+|++     +.|+.++ + 
T Consensus        38 ~~~~~~Spd---G~~l~~~~~---~~g~~~l~~~d~~~~~~~~---l-~~~~~~~~~~~~~spdg-----~~l~~~~~~~  102 (396)
T 3c5m_A           38 FYQKCFTQD---GKKLLFAGD---FDGNRNYYLLNLETQQAVQ---L-TEGKGDNTFGGFISTDE-----RAFFYVKNEL  102 (396)
T ss_dssp             TTSCCBCTT---SCEEEEEEC---TTSSCEEEEEETTTTEEEE---C-CCSSCBCTTTCEECTTS-----SEEEEEETTT
T ss_pred             eecCcCCCC---CCEEEEEEe---cCCCceEEEEECCCCcEEE---e-ecCCCCccccceECCCC-----CEEEEEEcCC
Confidence            788999999   999888762   2333333435555554432   1 222333 3448899999     7776665 4 


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEE-------------------EEEcCCCCCEEEEE-----eCCCeEEEEE
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITS-------------------FDWAGFDTRRVATC-----SVDTTCVIWD  152 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l~~~-----~~d~~v~i~d  152 (339)
                      .|++|++.+++  .......+.     .....                   ..|+| +++.++..     ..+..|.+||
T Consensus       103 ~l~~~d~~~~~--~~~~~~~~~-----~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A          103 NLMKVDLETLE--EQVIYTVDE-----EWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             EEEEEETTTCC--EEEEEECCT-----TEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEE
T ss_pred             cEEEEECCCCC--cEEEEeccc-----ccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEE
Confidence            89999998876  333333222     11111                   34666 66666554     3567899999


Q ss_pred             CCCCeeeeeeeccCCceeEEEecC--CcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          153 IDREILETQLVAHDREVYDISWGG--FNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +.+++..... .+...+..+.|++  +..|+..+.+      ..|.+||+........ ... .....+..++|+| +++
T Consensus       175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~-~~~~~~~~~~~sp-dg~  250 (396)
T 3c5m_A          175 IETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-KEH-AEGESCTHEFWIP-DGS  250 (396)
T ss_dssp             TTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-SCC-CTTEEEEEEEECT-TSS
T ss_pred             CCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-ecc-CCCccccceEECC-CCC
Confidence            9888755444 4667789999995  6667666543      3688899876542222 111 1123578899998 888


Q ss_pred             eEEEEeeCC----CeEEEEecCCCCCceEEEecCCCCeeEEEecc-CCCCeEEEEe----------------CCCcEEEE
Q 040307          225 FMATVGMDS----NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP-LYGRRLCSVA----------------DDSRALIW  283 (339)
Q Consensus       225 ~l~~~~~d~----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~----------------~dg~v~iw  283 (339)
                      .|+..+.++    ..|++||+.. ++. ..+..... .. +.|+| ++ +++++++                .++.|++|
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~-g~~-~~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~  325 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPET-LEN-EEVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVL  325 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTT-CCE-EEEEECCS-EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEE
T ss_pred             EEEEEecCCCCccceEEEEECCC-CCe-EEeeeCCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEE
Confidence            777665541    1299999876 332 22322222 33 89999 98 4777654                34679999


Q ss_pred             EecCCCCCCCCCCCCCcccceeeecccc-----------eeEEEEecCCCCceEEEe-cCCeEEEEe
Q 040307          284 EVVGPGYRSGNGGPSGDVEPELCYQSMA-----------EINVVRWSPLELDWIAIA-FVNKLQLLK  338 (339)
Q Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~p~~~~l~~~~-~d~~v~~w~  338 (339)
                      |+....             ...+..+..           .+..++|+|+|+.|+.++ .++...+|.
T Consensus       326 d~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          326 NTKAKS-------------AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             ETTTTB-------------CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ecccCc-------------eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence            987765             222333332           256789999998877665 456666664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=5e-18  Score=157.43  Aligned_cols=241  Identities=10%  Similarity=0.081  Sum_probs=157.7

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-----CceEEEEcCCCCCCCCCeEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-----TPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~~~~~la   92 (339)
                      ....+++|+|+   +++|+++      ++.|++|+......  ..  .+ ..|..     ....++||||+     +.|+
T Consensus        17 ~~~~~~~w~~d---g~~~~~~------~~~i~~~~~~~~~~--~~--~~-~~~~~~~~~~~~~~~~~Spdg-----~~l~   77 (740)
T 4a5s_A           17 LKLYSLRWISD---HEYLYKQ------ENNILVFNAEYGNS--SV--FL-ENSTFDEFGHSINDYSISPDG-----QFIL   77 (740)
T ss_dssp             CCCCCEEECSS---SEEEEEE------TTEEEEEETTTCCE--EE--EE-CTTTTTTCCSCCCEEEECTTS-----SEEE
T ss_pred             ccccccEECCC---CcEEEEc------CCcEEEEECCCCce--EE--EE-echhhhhhcccccceEECCCC-----CEEE
Confidence            35779999999   9888773      68999977665432  21  11 33332     23458999999     7777


Q ss_pred             EeCC-----------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           93 TSGD-----------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        93 ~~~~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                      .+++           .+.+||+.+++  . ..+..+.     ..+...+||| +++.||.+. ++.|++|++.+++..+.
T Consensus        78 ~~~~~~~~~r~~~~~~~~~~d~~~~~--~-~~l~~~~-----~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           78 LEYNYVKQWRHSYTASYDIYDLNKRQ--L-ITEERIP-----NNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTE--E-CCSSCCC-----TTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             EEECCeeeEEEccceEEEEEECCCCc--E-EEcccCC-----CcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEE
Confidence            7653           35699999886  2 2344444     6799999999 999999885 68999999988764432


Q ss_pred             e-eccCCce-----------------eEEEec-CCcEEEEEeCCC-----------------------------------
Q 040307          162 L-VAHDREV-----------------YDISWG-GFNVFASVSGDC-----------------------------------  187 (339)
Q Consensus       162 ~-~~~~~~v-----------------~~~~~~-~~~~l~~~~~d~-----------------------------------  187 (339)
                      . .++...+                 ..+.|+ +++.|+.++.|.                                   
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence            1 2222222                 348899 788888875332                                   


Q ss_pred             -cEEEEECCC---Ccc--eeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEecCCCC-----CceEE
Q 040307          188 -SVRVFDLRD---KER--STIIYENP---VQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLDIRFPT-----NPVVV  250 (339)
Q Consensus       188 -~i~i~d~~~---~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~-----~~~~~  250 (339)
                       .|++||+.+   ++.  ...+....   .+...+..++|+| +++.++.....+   ..|.+||+....     ..+..
T Consensus       228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~  306 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ  306 (740)
T ss_dssp             EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred             eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence             477888887   631  22221100   1456789999999 788666554332   149999998743     01222


Q ss_pred             E--ecCCCCee-----EEEeccCCCCeEE-EEe-CCC--cEEEEEecCCC
Q 040307          251 L--SKHEGSVN-----GISWAPLYGRRLC-SVA-DDS--RALIWEVVGPG  289 (339)
Q Consensus       251 ~--~~~~~~v~-----~~~~~p~~~~~l~-~~~-~dg--~v~iwd~~~~~  289 (339)
                      +  ..|...|.     .++|+|||. .|+ ..+ .+|  .|++||+....
T Consensus       307 l~~~~~~~~v~~~~~~~p~fspDG~-~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          307 HIEMSTTGWVGRFRPSEPHFTLDGN-SFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSS-EEEEEEECTTSCEEEEEEETTCSS
T ss_pred             eeeccCCceEccCcCCCceEcCCCC-EEEEEEEcCCCceEEEEEECCCCc
Confidence            2  45666555     789999994 555 555 444  47777776655

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=1.2e-16  Score=133.99  Aligned_cols=264  Identities=8%  Similarity=-0.002  Sum_probs=175.8

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      ..|.+++|+|+   +..++...    .++.++.|.    ...+.   .+ ..+...+.+++|+|++     ++++++. +
T Consensus         6 ~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~----~~~~~---~~-~~~~~~~~~~~~~~~g-----~l~~~~~~~   65 (333)
T 2dg1_A            6 QDLPTLFYSGK---SNSAVPII----SESELQTIT----AEPWL---EI-SKKGLQLEGLNFDRQG-----QLFLLDVFE   65 (333)
T ss_dssp             CCCCBCCSCGG---GGCSSCCC----CGGGSCEEE----CEEEE---EE-ESSCCCEEEEEECTTS-----CEEEEETTT
T ss_pred             cccceeeecCC---ccceeEEe----ecccCcccc----cceeE---EE-eccCccccCcEECCCC-----CEEEEECCC
Confidence            45788999999   77777766    588888861    11222   22 4556678999999999     8887765 3


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeeeeeee--ccCCce
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILETQLV--AHDREV  169 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~--~~~~~v  169 (339)
                       .|.+|+.++++  .......+.     ..+.+++++| +++++++...+    +.|.+||.++++....+.  .....+
T Consensus        66 ~~i~~~d~~~~~--~~~~~~~~~-----~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           66 GNIFKINPETKE--IKRPFVSHK-----ANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             CEEEEECTTTCC--EEEEEECSS-----SSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CEEEEEeCCCCc--EEEEeeCCC-----CCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence             89999998876  332222333     6799999998 88888877666    689999998776443332  234568


Q ss_pred             eEEEec-CCcEEEEEeC------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE-eeCCCeEEEEec
Q 040307          170 YDISWG-GFNVFASVSG------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV-GMDSNKVVVLDI  241 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~d~~~i~i~d~  241 (339)
                      .+++++ +++++++...      .+.|..+|..+.+.......    ...+..++|+| +++.|+++ ..++. |.+||+
T Consensus       138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~-dg~~l~v~~~~~~~-i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----ISVANGIALST-DEKVLWVTETTANR-LHRIAL  211 (333)
T ss_dssp             EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----ESSEEEEEECT-TSSEEEEEEGGGTE-EEEEEE
T ss_pred             cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----CCcccceEECC-CCCEEEEEeCCCCe-EEEEEe
Confidence            899999 6777666553      24566666655442222111    23578899998 77766554 44566 999999


Q ss_pred             CCCCCceEEE--------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-ccc--
Q 040307          242 RFPTNPVVVL--------SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSM--  310 (339)
Q Consensus       242 ~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~--  310 (339)
                      ...+..+..+        ..+ ..+..+++++++ +++++...++.|.+||.. .+             ..... ...  
T Consensus       212 ~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~-------------~~~~~~~~~~~  275 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GY-------------PIGQILIPGRD  275 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SC-------------EEEEEECTTGG
T ss_pred             cCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CC-------------EEEEEEcCCCc
Confidence            6433333211        111 367889999998 577777778899999874 33             22222 121  


Q ss_pred             ----ceeEEEEecCCCCceEEEecC
Q 040307          311 ----AEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       311 ----~~i~~~~~~p~~~~l~~~~~d  331 (339)
                          ..+.+++|+|++..|+.++.+
T Consensus       276 ~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          276 EGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cccccCcceEEECCCCCEEEEEeCc
Confidence                268999999998766655443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=1.5e-17  Score=140.27  Aligned_cols=250  Identities=10%  Similarity=-0.006  Sum_probs=156.7

Q ss_pred             CCceeeeeeccC--CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-----CCCceEEEE
Q 040307            7 KKPGVHTYMAQW--PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-----PYTPTNIAF   79 (339)
Q Consensus         7 ~~~~~~~~~~~~--~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~   79 (339)
                      +++.+..+....  .+..++|+|+   +++++++..   .++.|.+|+..  +++...  .+...+     ...+..++|
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~s~d---g~~~~v~~~---~~~~i~~~d~~--t~~~~~--~~~~~~~~~~~~~~~~~~~~   99 (349)
T 1jmx_B           30 SDTVYKSCVMPDKFGPGTAMMAPD---NRTAYVLNN---HYGDIYGIDLD--TCKNTF--HANLSSVPGEVGRSMYSFAI   99 (349)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTT---SSEEEEEET---TTTEEEEEETT--TTEEEE--EEESCCSTTEEEECSSCEEE
T ss_pred             CCcEEEEEecCCCCCCceeEECCC---CCEEEEEeC---CCCcEEEEeCC--CCcEEE--EEEcccccccccccccceEE
Confidence            345555565555  7889999999   886655442   58899997654  333332  222222     234889999


Q ss_pred             cCCCCCCCCCeEEEeC--------------CcEEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           80 FPSEETLNPDIVATSG--------------DSLRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        80 ~~~~~~~~~~~la~~~--------------~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      +|++     +.|++++              +.|.+||+.+++. .....+..+      ..+.+++|+| +++ +++++ 
T Consensus       100 spdg-----~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~-dg~-l~~~~-  165 (349)
T 1jmx_B          100 SPDG-----KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP------RQVYLMRAAD-DGS-LYVAG-  165 (349)
T ss_dssp             CTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC------SSCCCEEECT-TSC-EEEES-
T ss_pred             CCCC-----CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC------CcccceeECC-CCc-EEEcc-
Confidence            9999     7777765              4999999987542 122333332      4578899998 888 55554 


Q ss_pred             CCeEEEEECCCCeeeeeeeccCC------------------------ceeEEEec-CCcEE-EEEeCCCcEEEEECCCCc
Q 040307          145 DTTCVIWDIDREILETQLVAHDR------------------------EVYDISWG-GFNVF-ASVSGDCSVRVFDLRDKE  198 (339)
Q Consensus       145 d~~v~i~d~~~~~~~~~~~~~~~------------------------~v~~~~~~-~~~~l-~~~~~d~~i~i~d~~~~~  198 (339)
                       +.|.+||+.+++....+..+..                        ....++++ ++... ........+..+|..+++
T Consensus       166 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  244 (349)
T 1jmx_B          166 -PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  244 (349)
T ss_dssp             -SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             -CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc
Confidence             3499999999887766643320                        22334444 11000 000000112224544443


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS  278 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  278 (339)
                      ........  ....+..++|+|.++++++++  ++. |.+||+.+ .+.+..+.. ...+.+++|+|++ +.|++++.++
T Consensus       245 ~~~~~~~~--~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~  316 (349)
T 1jmx_B          245 THTQEFAD--LTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQ-RKLIKAANL-DHTYYCVAFDKKG-DKLYLGGTFN  316 (349)
T ss_dssp             EEEEEEEE--CSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTT-TEEEEEEEC-SSCCCEEEECSSS-SCEEEESBSS
T ss_pred             EEeccccc--CCCcceeeEecCCCCCEEEEE--cCe-EEEEECcc-CeEEEEEcC-CCCccceEECCCC-CEEEEecCCC
Confidence            22221111  345788999997467777777  666 99999987 555555553 4467899999999 4777788889


Q ss_pred             cEEEEEecCCC
Q 040307          279 RALIWEVVGPG  289 (339)
Q Consensus       279 ~v~iwd~~~~~  289 (339)
                      .|.+||+.+.+
T Consensus       317 ~v~v~d~~~~~  327 (349)
T 1jmx_B          317 DLAVFNPDTLE  327 (349)
T ss_dssp             EEEEEETTTTE
T ss_pred             eEEEEeccccc
Confidence            99999998766

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1.5e-16  Score=130.42  Aligned_cols=240  Identities=9%  Similarity=-0.013  Sum_probs=164.6

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC-CccCCCCEEEEEEcCCCCCEEEEEeC-C
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK-TSEFSSAITSFDWAGFDTRRVATCSV-D  145 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~-d  145 (339)
                      +-..+.++++++++     .++++.. + .|.+|+.+..   ....+.... ...+...+..+++.+.++.++++... +
T Consensus        28 ~~~~p~~v~~~~~g-----~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~   99 (286)
T 1q7f_A           28 QFTEPSGVAVNAQN-----DIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT   99 (286)
T ss_dssp             CBSCEEEEEECTTC-----CEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred             ccCCCceEEECCCC-----CEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence            44568899999999     7888765 3 8999998743   333333210 11122568899995326666666543 8


Q ss_pred             CeEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          146 TTCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      +.|.+|| .+++.+..+. .+...+.+++++ +++++++...++.|.+||... +.... .....+...+..++++| ++
T Consensus       100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~-~~~~~~~~~p~~i~~~~-~g  175 (286)
T 1q7f_A          100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK-FGCSKHLEFPNGVVVND-KQ  175 (286)
T ss_dssp             CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE-EECTTTCSSEEEEEECS-SS
T ss_pred             CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEE-eCCCCccCCcEEEEECC-CC
Confidence            9999999 5666666553 234568899999 678887777789999999654 32222 22212335689999998 78


Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEeCCC-cEEEEEecCCCCCCCCCCCCCc
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDS-RALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      +++++...++. |++||..  +..+..+..+  ...+..++++|++ .++++...++ .|.+|+.....           
T Consensus       176 ~l~v~~~~~~~-i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~-----------  240 (286)
T 1q7f_A          176 EIFISDNRAHC-VKVFNYE--GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQL-----------  240 (286)
T ss_dssp             EEEEEEGGGTE-EEEEETT--CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCE-----------
T ss_pred             CEEEEECCCCE-EEEEcCC--CCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCE-----------
Confidence            87777666777 9999974  3455555443  3578999999999 5888887776 99999954322           


Q ss_pred             ccceeeec--ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          301 VEPELCYQ--SMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       301 ~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                        ......  ....+.+++++|+|..+++ +.|+.|++|++
T Consensus       241 --~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          241 --ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             --EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             --EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence              112222  2234789999999974444 78999999984

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=1.5e-16  Score=134.22  Aligned_cols=258  Identities=14%  Similarity=0.138  Sum_probs=168.5

Q ss_pred             CCeeEEEeeecCCcccEEEEeeec-----cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFL-----EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~-----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      ..+..+++  +   |+.+|.....     ...++.|.+|+.  .++....     .   ..+..++|+|++     +.||
T Consensus        15 ~~~~~~~~--d---G~~i~~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~-----l---~~~~~~~~SpDg-----~~la   74 (347)
T 2gop_A           15 AYLSDPRT--K---GELVAYVLTKANLKDNKYENTIVIENL--KNNARRF-----I---ENATMPRISPDG-----KKIA   74 (347)
T ss_dssp             CEEEEEEE--E---TTEEEEEEEEEETTTTEEEEEEEEEET--TTCCEEE-----E---ESCEEEEECTTS-----SEEE
T ss_pred             EEcccceE--C---CcEEEEEEeecCcccCCccceEEEEeC--CCCceEE-----c---ccCCCeEECCCC-----CEEE
Confidence            45677778  7   8888875421     012456667554  4444332     2   468899999999     7777


Q ss_pred             EeC-----C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------------------
Q 040307           93 TSG-----D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------------------  145 (339)
Q Consensus        93 ~~~-----~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------------  145 (339)
                      ..+     +  .|.+|++.+++  ...... +.     . +..+.|+| +++.|+.++.+                    
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~g~--~~~l~~-~~-----~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  144 (347)
T 2gop_A           75 FMRANEEKKVSEIWVADLETLS--SKKILE-AK-----N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDL  144 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTTTE--EEEEEE-ES-----E-EEEEEECT-TSSEEEEEEECCCC---------CCCC----
T ss_pred             EEEeccCCCcceEEEEECCCCc--eEEEEc-CC-----C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence            654     2  48888887765  333222 22     4 88999998 89988887642                    


Q ss_pred             -------CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC-------cEEEEECCCCcceeeEEeCCCCC
Q 040307          146 -------TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC-------SVRVFDLRDKERSTIIYENPVQD  210 (339)
Q Consensus       146 -------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~  210 (339)
                             ..|++||+.+++.+..+.. . .+..+.|+ ++ +++++..+.       ...+|.+.+++ ...+..   + 
T Consensus       145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~---~-  216 (347)
T 2gop_A          145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFE---K-  216 (347)
T ss_dssp             -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEE---E-
T ss_pred             ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEecc---C-
Confidence                   5799999988876455554 4 78899999 56 777776542       33454444333 333222   1 


Q ss_pred             CCeEEEEEecCCCCeEEEEeeCC-------CeEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEeCCCcEEE
Q 040307          211 CPLLRLEWNKADPRFMATVGMDS-------NKVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVADDSRALI  282 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~-------~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~v~i  282 (339)
                      ..+..+  +| +|+.|+.++.+.       ..|.+||  . ++.......+...+.. +.|+ ++  ++++++.++.++|
T Consensus       217 ~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l  287 (347)
T 2gop_A          217 VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNL  287 (347)
T ss_dssp             ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEE
T ss_pred             cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEE
Confidence            344444  88 888887776443       2378888  2 4433333455677886 9999 75  8888999999999


Q ss_pred             EEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeE-EEEe
Q 040307          283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKL-QLLK  338 (339)
Q Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v-~~w~  338 (339)
                      | +..++             ......+...|.+++|+|  ..+++++.++.. ++|.
T Consensus       288 ~-~~~g~-------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          288 Y-IWDGE-------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             E-EESSS-------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             E-EcCCc-------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence            9 88433             344445577899999999  455666666654 7775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=8.9e-16  Score=128.47  Aligned_cols=248  Identities=10%  Similarity=0.033  Sum_probs=173.1

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccC------------------------CeEEEEecCCCCCcccceeeEeecCCCC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYS------------------------NKIELVNFNPETSDFSADNRLIFDHPYT   73 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~------------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~   73 (339)
                      ..+.+++++|+   ++++++..    .+                        +.|.+  ++..++.+..  .....+-..
T Consensus        24 ~~v~~va~d~~---G~l~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~d~~~g~~~~--~~~~~~~~~   92 (329)
T 3fvz_A           24 GQVSGVALDSK---NNLVIFHR----GDHVWDGNSFDSKFVYQQRGLGPIEEDTILV--IDPNNAEILQ--SSGKNLFYL   92 (329)
T ss_dssp             SCEEEEEECTT---CCEEEEEC----TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEE--ECTTTCCEEE--EECTTTCSS
T ss_pred             CCceEEEECCC---CCEEEEeC----CCCeEEeeccCcceeecccccccccCCcEEE--EECCCCeEEe--ccCCCccCC
Confidence            57999999999   99888777    34                        36777  5554444443  221234457


Q ss_pred             ceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCC----CccCCCCEEEEEEcCCCCCEEEEEe-CCC
Q 040307           74 PTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNK----TSEFSSAITSFDWAGFDTRRVATCS-VDT  146 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~-~d~  146 (339)
                      +..++++|++     +++++...  .|++|+.+... ..+..+....    ..........++++|.++.++++.+ .++
T Consensus        93 p~gia~d~~g-----~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           93 PHGLSIDTDG-----NYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             EEEEEECTTS-----CEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             ceEEEECCCC-----CEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            8999999999     88888764  99999986542 1233332100    0112256889999975677777775 689


Q ss_pred             eEEEEECCCCeeeeeeeccC----------CceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307          147 TCVIWDIDREILETQLVAHD----------REVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL  214 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~----------~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  214 (339)
                      .|++|| .+++.+..+....          .....++++ + ++++++...++.|++||..+++....+ ....+...+.
T Consensus       167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-~~~~~~~~~~  244 (329)
T 3fvz_A          167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-KHASFGRNVF  244 (329)
T ss_dssp             EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CCTTTTTCEE
T ss_pred             eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-eccccCCCcc
Confidence            999999 4666666663222          337899998 5 677788888899999999866644443 2223456788


Q ss_pred             EEEEecCCCCeEEEEee-------CCCeEEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          215 RLEWNKADPRFMATVGM-------DSNKVVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~-------d~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      .++|+|  +..+.+.+.       +.. |++||... ++.+..+.   .+.....+++++|+| .++++...++.|++|+
T Consensus       245 ~~~~~p--g~~~~~~g~~~v~~~~~~~-v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          245 AISYIP--GFLFAVNGKPYFGDQEPVQ-GFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EEEEET--TEEEEEECCCCTTCSCCCC-EEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEE
T ss_pred             eeeecC--CEEEEeCCCEEeccCCCcE-EEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEe
Confidence            999997  333333322       235 99999887 56666663   566778999999999 6999999999999999


Q ss_pred             ecCCC
Q 040307          285 VVGPG  289 (339)
Q Consensus       285 ~~~~~  289 (339)
                      +....
T Consensus       320 ~~~~~  324 (329)
T 3fvz_A          320 LTEKM  324 (329)
T ss_dssp             EEECS
T ss_pred             CCccc
Confidence            97654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=2.7e-16  Score=133.13  Aligned_cols=277  Identities=9%  Similarity=-0.004  Sum_probs=177.6

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec-----CCCCce
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD-----HPYTPT   75 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-----~~~~v~   75 (339)
                      +++.+.++...... .++|+|+   +++|+++..      .++.++.|.+|+..  +.+...  .+...     +.....
T Consensus        40 t~~~~~~i~~g~~p-~i~~spd---g~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~--~i~~~~~~~~~g~~p~  111 (361)
T 2oiz_A           40 NGKFLGMVPTAFNG-HVQVSND---GKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEK--EISLPPKRVQGLNYDG  111 (361)
T ss_dssp             TCCEEEEEECCEEE-EEEECTT---SSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEE--EEEECTTBCCBCCCGG
T ss_pred             CCeEEEEecCCCCC-ceEECCC---CCEEEEEEecccccccCCCCCEEEEEECc--CCcEEE--EEEcCccccccCCCcc
Confidence            34445455444344 8999999   999988762      11136789997654  333333  22221     235678


Q ss_pred             EEEEcCCCCCCCCCeEEEe--C-C-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Q 040307           76 NIAFFPSEETLNPDIVATS--G-D-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI  150 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~--~-~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i  150 (339)
                      .++|+|++     ++|.++  + + .|.+||+.+.+  .+.. +..       .....+.+.|.....+++.+.||.+.+
T Consensus       112 ~i~~spdg-----~~l~v~n~~~~~~v~v~d~~~~~--~~~~~i~~-------~~~~~v~~~p~~~~~~~~~~~dg~~~~  177 (361)
T 2oiz_A          112 LFRQTTDG-----KFIVLQNASPATSIGIVDVAKGD--YVEDVTAA-------AGCWSVIPQPNRPRSFMTICGDGGLLT  177 (361)
T ss_dssp             GEEECTTS-----SEEEEEEESSSEEEEEEETTTTE--EEEEEGGG-------TTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred             eEEECCCC-----CEEEEECCCCCCeEEEEECCCCc--EEEEEecC-------CCcceeEEcCCCCeeEEEECCCCcEEE
Confidence            99999999     666654  2 3 89999999886  5555 443       223335667744478888899999999


Q ss_pred             EECCC-Ceeee------eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCCC----C----CCCe
Q 040307          151 WDIDR-EILET------QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENPV----Q----DCPL  213 (339)
Q Consensus       151 ~d~~~-~~~~~------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~----~----~~~v  213 (339)
                      |+... ++...      .+.....++ .+.++ ++..++..+.++.+.++|+......... .....    .    ....
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~  256 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY  256 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred             EEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence            99865 44331      111222222 22223 4556677778899999999765422111 11000    0    0111


Q ss_pred             EEEEEecCCCCeEEEEee-C---------CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          214 LRLEWNKADPRFMATVGM-D---------SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~~-d---------~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      ..++|+| +++.++++.. +         ...|.+||+.+ .+.+.++..+.  +.+++|+|++ ++|++++. +.|.+|
T Consensus       257 ~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          257 NLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVY  330 (361)
T ss_dssp             SCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEE
T ss_pred             eEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEE
Confidence            2368998 6666666543 1         12399999987 66788888776  9999999999 58888776 999999


Q ss_pred             EecCCCCCCCCCCCCCcccceee-ecccceeEEEEecCCCC
Q 040307          284 EVVGPGYRSGNGGPSGDVEPELC-YQSMAEINVVRWSPLEL  323 (339)
Q Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~  323 (339)
                      |..+..           ++.+.. .........++++|+|.
T Consensus       331 D~~t~~-----------l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          331 DISQPE-----------PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECSSSS-----------CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ECCCCc-----------ceeeEEeccCCCCcEEEEecCCCC
Confidence            999882           114434 35677788999999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=2.9e-17  Score=140.69  Aligned_cols=230  Identities=12%  Similarity=0.012  Sum_probs=150.2

Q ss_pred             EEEcCCCCCCCCCeEEEeC--C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           77 IAFFPSEETLNPDIVATSG--D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        77 l~~~~~~~~~~~~~la~~~--~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      .+|+||+     +.|+.++  +   .|.+||+.+++  ......++.     ..+..+.|+| +++.|+.++.++.|++|
T Consensus        41 ~~~SpDg-----~~l~~~~~~~g~~~l~~~d~~~g~--~~~lt~~~~-----~~~~~~~~sp-dg~~l~~~~~~~~l~~~  107 (388)
T 3pe7_A           41 KCFTRDG-----SKLLFGGAFDGPWNYYLLDLNTQV--ATQLTEGRG-----DNTFGGFLSP-DDDALFYVKDGRNLMRV  107 (388)
T ss_dssp             CCBCTTS-----CEEEEEECTTSSCEEEEEETTTCE--EEECCCSSC-----BCSSSCEECT-TSSEEEEEETTTEEEEE
T ss_pred             ccCCCCC-----CEEEEEEcCCCCceEEEEeCCCCc--eEEeeeCCC-----CCccceEEcC-CCCEEEEEeCCCeEEEE
Confidence            7899999     6666654  2   48888888876  444444443     3444678998 99999999999999999


Q ss_pred             ECCCCeeeeeeeccCCceeEEEe--c-CCcEEEEE----------------------eCCCcEEEEECCCCcceeeEEeC
Q 040307          152 DIDREILETQLVAHDREVYDISW--G-GFNVFASV----------------------SGDCSVRVFDLRDKERSTIIYEN  206 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~--~-~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~  206 (339)
                      |+.+++....+..+...+....|  + ++..++..                      ..+..|.+||+.+++..... . 
T Consensus       108 d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~-  185 (388)
T 3pe7_A          108 DLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-Q-  185 (388)
T ss_dssp             ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-E-
T ss_pred             ECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-c-
Confidence            99998876666655555544444  5 56666632                      23467999999988644333 2 


Q ss_pred             CCCCCCeEEEEEecCCCCeEEEEeeCC----C-eEEEEecCCCCCceEEEecCC--CCeeEEEeccCCCCeEEEEe-CCC
Q 040307          207 PVQDCPLLRLEWNKADPRFMATVGMDS----N-KVVVLDIRFPTNPVVVLSKHE--GSVNGISWAPLYGRRLCSVA-DDS  278 (339)
Q Consensus       207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~----~-~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~-~dg  278 (339)
                        +...+..++|+|.+++.|+.....+    . .|.++|... . ....+..+.  ..+..++|+|+|. .|+..+ .++
T Consensus       186 --~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg~-~l~~~~~~~~  260 (388)
T 3pe7_A          186 --ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTHEFWVPDGS-ALVYVSYLKG  260 (388)
T ss_dssp             --ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEEEEECTTSS-CEEEEEEETT
T ss_pred             --CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCcccccceECCCCC-EEEEEecCCC
Confidence              2357899999984667776666532    1 278888754 2 334454444  3578899999995 554433 222


Q ss_pred             ----cEEEEEecCCCCCCCCCCCCCcccceeeecccc------eeEEEEecCCCCceEEE---------ecCCeEEEEeC
Q 040307          279 ----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA------EINVVRWSPLELDWIAI---------AFVNKLQLLKV  339 (339)
Q Consensus       279 ----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~~p~~~~l~~~---------~~d~~v~~w~v  339 (339)
                          .|++||+..++             ...+.....      ....++|+|+|+.|+..         ..+..|.+|++
T Consensus       261 ~~~~~l~~~d~~~g~-------------~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          261 SPDRFIYSADPETLE-------------NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             CCCEEEEEECTTTCC-------------EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             CCcceEEEEecCCCc-------------eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence                39999998876             221111111      02224799999887743         34567888874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=3e-16  Score=128.61  Aligned_cols=241  Identities=11%  Similarity=0.067  Sum_probs=167.1

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE--eecCCCCceEEEE-cCCCCCCCCCeEEEe
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL--IFDHPYTPTNIAF-FPSEETLNPDIVATS   94 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~-~~~~~~~~~~~la~~   94 (339)
                      ..+.+++++|+   +.++++..    .++.|.+|+.+  +.........  ...+...+..+++ .+++     .++++.
T Consensus        30 ~~p~~v~~~~~---g~l~v~~~----~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-----~l~v~~   95 (286)
T 1q7f_A           30 TEPSGVAVNAQ---NDIIVADT----NNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-----DIIVTE   95 (286)
T ss_dssp             SCEEEEEECTT---CCEEEEEG----GGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTT-----EEEEEE
T ss_pred             CCCceEEECCC---CCEEEEEC----CCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCC-----eEEEEc
Confidence            46889999999   88888777    58999996644  3222210000  0123356889999 4777     777777


Q ss_pred             C--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--ccCCce
Q 040307           95 G--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--AHDREV  169 (339)
Q Consensus        95 ~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~v  169 (339)
                      .  + .|.+|+. +++  ....+....    ...+.+++++| +++++++...++.|.+||.. ++.+..+.  .+...+
T Consensus        96 ~~~~~~i~~~d~-~g~--~~~~~~~~~----~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p  166 (286)
T 1q7f_A           96 RSPTHQIQIYNQ-YGQ--FVRKFGATI----LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP  166 (286)
T ss_dssp             CGGGCEEEEECT-TSC--EEEEECTTT----CSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred             CCCCCEEEEECC-CCc--EEEEecCcc----CCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCc
Confidence            3  4 9999994 444  444443211    15688999998 88888887788999999964 55555553  344568


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC-CeEEEEecCCCCCc
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS-NKVVVLDIRFPTNP  247 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-~~i~i~d~~~~~~~  247 (339)
                      ..++++ +++++++...++.|++||..... ... .....+...+..++++| +++++++...++ . |.+||..  ++.
T Consensus       167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~-~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~-i~~~~~~--g~~  240 (286)
T 1q7f_A          167 NGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQ-IGGEGITNYPIGVGINS-NGEILIADNHNNFN-LTIFTQD--GQL  240 (286)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEE-ESCTTTSCSEEEEEECT-TCCEEEEECSSSCE-EEEECTT--SCE
T ss_pred             EEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEE-EccCCccCCCcEEEECC-CCCEEEEeCCCCEE-EEEECCC--CCE
Confidence            899999 67877777788999999975432 222 22212235688999998 788887776665 6 9999954  455


Q ss_pred             eEEEecCCC--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          248 VVVLSKHEG--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       248 ~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +..+..+..  .+.+++++|++ +++++ +.|+.|++|++....
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          241 ISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred             EEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence            666665443  47799999998 56666 679999999987644

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=2.6e-16  Score=131.74  Aligned_cols=239  Identities=12%  Similarity=0.007  Sum_probs=166.9

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeCC--------------------------cEEEEeecCCcceeEEEeecCCCccCCC
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSGD--------------------------SLRLWEIHDDRTELKSLLNSNKTSEFSS  124 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~~--------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~  124 (339)
                      -+.+.+++++|++     +++++..+                          .|.+||..+++  ....+...    ...
T Consensus        23 l~~v~~va~d~~G-----~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~----~~~   91 (329)
T 3fvz_A           23 PGQVSGVALDSKN-----NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--ILQSSGKN----LFY   91 (329)
T ss_dssp             CSCEEEEEECTTC-----CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--EEEEECTT----TCS
T ss_pred             cCCceEEEECCCC-----CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--EEeccCCC----ccC
Confidence            3568999999999     88888763                          38999988776  44433311    115


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeee---------eccCCceeEEEecC--CcEEEEEe-CCCcEEE
Q 040307          125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQL---------VAHDREVYDISWGG--FNVFASVS-GDCSVRV  191 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~---------~~~~~~v~~~~~~~--~~~l~~~~-~d~~i~i  191 (339)
                      ....++++| +++++++...++.|++||..... .+..+         ..+-.....+++++  ++++++.+ .++.|++
T Consensus        92 ~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           92 LPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             CceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            788999998 88988888889999999986442 44444         23344688999993  66667765 5899999


Q ss_pred             EECCCCcceeeEEeC-------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe--cCCCCeeEEE
Q 040307          192 FDLRDKERSTIIYEN-------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS--KHEGSVNGIS  262 (339)
Q Consensus       192 ~d~~~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~  262 (339)
                      ||. .+.....+...       +.+-.....++++|+.+.++++...++. |++||... ++.+..+.  .+...+.+++
T Consensus       171 ~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~-G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          171 FSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDT-KEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             ECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTT-CCEEEEECCTTTTTCEEEEE
T ss_pred             EcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCC-CcEEEEEeccccCCCcceee
Confidence            994 34433332211       0111347899999843777776666666 99999875 55666663  3556788999


Q ss_pred             eccCCCCeEEEEe-------CCCcEEEEEecCCCCCCCCCCCCCcccceeee----cccceeEEEEecCCCCceEEEecC
Q 040307          263 WAPLYGRRLCSVA-------DDSRALIWEVVGPGYRSGNGGPSGDVEPELCY----QSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       263 ~~p~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      |+| + ..+++.+       .+..|++|++..++             .+...    .+...+..|+++|+|..+++...+
T Consensus       248 ~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~-------------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          248 YIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGE-------------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             EET-T-EEEEEECCCCTTCSCCCCEEEEETTTCC-------------EEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             ecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCe-------------EEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence            999 3 3333333       34589999988876             33332    455678999999999656677789


Q ss_pred             CeEEEEeC
Q 040307          332 NKLQLLKV  339 (339)
Q Consensus       332 ~~v~~w~v  339 (339)
                      +.|++|++
T Consensus       313 ~~I~~~~~  320 (329)
T 3fvz_A          313 NTVWKFTL  320 (329)
T ss_dssp             CCEEEEEE
T ss_pred             CEEEEEeC
Confidence            99999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=6.5e-17  Score=148.27  Aligned_cols=232  Identities=10%  Similarity=0.011  Sum_probs=150.6

Q ss_pred             EEEee--ecCCcccE-EEEeeeccccCCeEEEEecCCC--C-CcccceeeEeec-----CCCCceEEEEcCCCCCCCCCe
Q 040307           22 TVAWS--VRHDRKSR-LAVGSFLEDYSNKIELVNFNPE--T-SDFSADNRLIFD-----HPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        22 ~i~~s--p~~~~~~~-la~g~~~~~~~~~i~i~~~~~~--~-~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      ...|+  ||   ++. |+.+.     +....||.++..  + +....   + ..     |...+..++|+||+     +.
T Consensus        81 ~~~~~~SPD---g~~~la~~~-----~~~~~l~~~~~~~~g~~~~~~---l-~~~~~~~~~~~~~~~~~spDg-----~~  143 (662)
T 3azo_A           81 PWAGVPRPA---GGPLLVFTH-----FGDQRLYAFEPDAPGGAVPRP---L-TPVSAVGGGLRWADPVLLPER-----GE  143 (662)
T ss_dssp             CEEEECCSS---SSCEEEEEB-----TTTCCEEEECTTSTTCCCCEE---C-SCCCCSTTCEEEEEEEEETTT-----TE
T ss_pred             cceeeeecC---CCeEEEEEE-----CCCCeEEEEcCCCCCCCCCEe---c-cCCccCCCCccccCcEECCCC-----CE
Confidence            56666  99   888 88776     324445556654  2 33322   1 22     56678999999999     77


Q ss_pred             EEEeC-C-----------cEEEEeecC------CcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCC------
Q 040307           91 VATSG-D-----------SLRLWEIHD------DRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVD------  145 (339)
Q Consensus        91 la~~~-~-----------~i~iw~~~~------~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------  145 (339)
                      |+.++ +           .|++|++.+      ++  . ..+. .+.     ..+..++|+| |+++|+.++.+      
T Consensus       144 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~-~~l~~~~~-----~~~~~~~~Sp-DG~~la~~~~~~~~~~~  214 (662)
T 3azo_A          144 VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA--V-RELSDDAH-----RFVTGPRLSP-DGRQAVWLAWDHPRMPW  214 (662)
T ss_dssp             EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--S-EESSCSCS-----SEECCCEECT-TSSEEEEEEECTTCCTT
T ss_pred             EEEEEecccCCCCCCceeEEEEEECCCCccccCCc--e-eEEEecCC-----CcccCceECC-CCCEEEEEECCCCCCCC
Confidence            76654 2           688999887      44  2 2333 333     5677899998 99999987755      


Q ss_pred             --CeEEEEECC-CC---eeeeeeeccCCceeEEEec-CCcEEEEEeCCC--cEEEEECCCCcceeeEEeCCCCCC-----
Q 040307          146 --TTCVIWDID-RE---ILETQLVAHDREVYDISWG-GFNVFASVSGDC--SVRVFDLRDKERSTIIYENPVQDC-----  211 (339)
Q Consensus       146 --~~v~i~d~~-~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~-----  211 (339)
                        ..|++||+. ++   +.......+...+..+.|+ ++++++++..++  .|.+||+.+++.... ...  +..     
T Consensus       215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~--~~~~~~p~  291 (662)
T 3azo_A          215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-CRR--EEEFAGPL  291 (662)
T ss_dssp             TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-SCC--SSBSSCCC
T ss_pred             CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-ccc--cccccCcc
Confidence              379999998 56   4444444557789999999 788888888888  566666655542222 111  111     


Q ss_pred             ---CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE-EeccCCCCeEEEEeCCCcEEEEEec
Q 040307          212 ---PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI-SWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       212 ---~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                         .+..++|+| +++++++++. +. ++||.+......+..+..|...+..+ +++++. .++++++.+....+|.+.
T Consensus       292 w~~~~~~~~~~~-~~~~~~~~~~-~~-~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          292 WTPGMRWFAPLA-NGLIAVVHGK-GA-AVLGILDPESGELVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             CSTTCCSEEECT-TSCEEEEEBS-SS-CEEEEEETTTTEEEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEE
T ss_pred             ccccCceEeEeC-CCEEEEEEEc-Cc-cEEEEEECCCCcEEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEE
Confidence               145788887 8888888888 77 88885443233467777777777777 544433 234445555555555444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=4.4e-15  Score=137.13  Aligned_cols=277  Identities=8%  Similarity=-0.029  Sum_probs=173.9

Q ss_pred             ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccce---eeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----C--
Q 040307           27 VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSAD---NRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----D--   96 (339)
Q Consensus        27 p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----~--   96 (339)
                      |+   |++++......+ ...-.||..+..++.....   ..+..+|...+..++||||+     +.||.+.     +  
T Consensus        81 ~d---G~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg-----~~la~~~~~~G~~~~  151 (710)
T 2xdw_A           81 KK---GKRYFYFYNTGL-QNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDG-----EYFAYGLSASGSDWV  151 (710)
T ss_dssp             EE---TTEEEEEEECSS-CSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTS-----SEEEEEEEETTCSCE
T ss_pred             EE---CCEEEEEEEcCC-ceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCC-----CEEEEEEcCCCCceE
Confidence            88   888887763111 1122455565444333210   01112344468899999999     7777542     2  


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe----------------EEEEECCCCeee-
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT----------------CVIWDIDREILE-  159 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~----------------v~i~d~~~~~~~-  159 (339)
                      .|++||+.+++.... .+..       ..+..++|+| |++.|+.++.++.                |++|++.+++.. 
T Consensus       152 ~i~v~d~~tg~~~~~-~~~~-------~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~  222 (710)
T 2xdw_A          152 TIKFMKVDGAKELPD-VLER-------VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED  222 (710)
T ss_dssp             EEEEEETTTTEEEEE-EEEE-------ECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred             EEEEEECCCCCCCcc-cccC-------cccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence            899999999873221 2222       2356799998 9999999888766                999999877522 


Q ss_pred             -eeee--ccCCceeEEEec-CCcEEEEEeC-----CCcEEEEECCC------Cc-ceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          160 -TQLV--AHDREVYDISWG-GFNVFASVSG-----DCSVRVFDLRD------KE-RSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       160 -~~~~--~~~~~v~~~~~~-~~~~l~~~~~-----d~~i~i~d~~~------~~-~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                       ..+.  .+...+..+.|+ ++++|+..+.     +..|++||+.+      +. ....+...   ...+.. .|+| ++
T Consensus       223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~~~~-~~s~-dg  297 (710)
T 2xdw_A          223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN---FEGEYD-YVTN-EG  297 (710)
T ss_dssp             EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS---SSSCEE-EEEE-ET
T ss_pred             eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC---CCcEEE-EEec-cC
Confidence             2222  245557889999 7888887764     56899999986      43 23333222   233333 4777 66


Q ss_pred             CeEEEEeeCC---CeEEEEecCCCCC-ceEEEecCCC--CeeEEEeccCCCCeEEEEeCCCcEEEE--EecCCCCCCCCC
Q 040307          224 RFMATVGMDS---NKVVVLDIRFPTN-PVVVLSKHEG--SVNGISWAPLYGRRLCSVADDSRALIW--EVVGPGYRSGNG  295 (339)
Q Consensus       224 ~~l~~~~~d~---~~i~i~d~~~~~~-~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~iw--d~~~~~~~~~~~  295 (339)
                      +.|+..+..+   ..|.+||+..... ....+..|..  .+..++|++++ .++++...|+..+||  ++..++      
T Consensus       298 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~------  370 (710)
T 2xdw_A          298 TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA------  370 (710)
T ss_dssp             TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC------
T ss_pred             CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC------
Confidence            6666555432   1499999876431 2355555544  68889999776 688888888865555  543443      


Q ss_pred             CCCCcccceeeecccceeEEEEecCCCCceEEE-e---cCCeEEEEeC
Q 040307          296 GPSGDVEPELCYQSMAEINVVRWSPLELDWIAI-A---FVNKLQLLKV  339 (339)
Q Consensus       296 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~---~d~~v~~w~v  339 (339)
                            ....+..+.+.+..++++|++..++.. +   ..+.+.+|++
T Consensus       371 ------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          371 ------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             ------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             ------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence                  112333356778999999998766533 2   3467777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=5.1e-14  Score=115.84  Aligned_cols=273  Identities=8%  Similarity=-0.043  Sum_probs=179.1

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      ..+.++++.|+   +.++++..    .++.|.+|+.+   +.+..  .........+.++++.+++     .++++.. +
T Consensus        15 ~~~~~i~~d~~---g~l~v~~~----~~~~v~~~d~~---~~~~~--~~~~~~~~~~~~i~~~~~g-----~l~v~~~~~   77 (299)
T 2z2n_A           15 TGPYGITVSDK---GKVWITQH----KANMISCINLD---GKITE--YPLPTPDAKVMCLTISSDG-----EVWFTENAA   77 (299)
T ss_dssp             CCEEEEEECTT---SCEEEEET----TTTEEEEECTT---CCEEE--EECSSTTCCEEEEEECTTS-----CEEEEETTT
T ss_pred             CCccceEECCC---CCEEEEec----CCCcEEEEcCC---CCeEE--ecCCcccCceeeEEECCCC-----CEEEeCCCC
Confidence            57999999999   88766655    47889996544   33332  1112245678999999999     7877765 3


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-eeccCCceeEEEe
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ-LVAHDREVYDISW  174 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~  174 (339)
                       .|..|+.+ ++. ....+....     ..+.++++.| ++.++++...++.|.+||. +++.... .......+..+++
T Consensus        78 ~~i~~~~~~-g~~-~~~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~  148 (299)
T 2z2n_A           78 NKIGRITKK-GII-KEYTLPNPD-----SAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL  148 (299)
T ss_dssp             TEEEEECTT-SCE-EEEECSSTT-----CCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             CeEEEECCC-CcE-EEEeCCCcC-----CCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence             89999876 331 111121122     5788999997 8888887777889999998 5543322 2234456889999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEe
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLS  252 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~  252 (339)
                      . +++++++...++.|..||. +++... . ..+.....+..+++++ ++++.++...++. |.+||. . +.... ...
T Consensus       149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~~~-~-g~~~~~~~~  221 (299)
T 2z2n_A          149 GSDNALWFTENQNNAIGRITE-SGDITE-F-KIPTPASGPVGITKGN-DDALWFVEIIGNK-IGRITT-S-GEITEFKIP  221 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEECT-T-CCEEEEECS
T ss_pred             cCCCCEEEEeCCCCEEEEEcC-CCcEEE-e-eCCCCCCcceeEEECC-CCCEEEEccCCce-EEEECC-C-CcEEEEECC
Confidence            8 6777777666789999998 544322 2 1222345688999997 6776665545666 999998 4 33222 123


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~  332 (339)
                      .+...+.++++++++ .++++...++.|..||.. ..           ........+...+.++++ +++..+++.. .+
T Consensus       222 ~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~-----------~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~  286 (299)
T 2z2n_A          222 TPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN-NI-----------IEEYPIQIKSAEPHGICF-DGETIWFAME-CD  286 (299)
T ss_dssp             STTCCEEEEEECSTT-CEEEEETTTTEEEEEETT-TE-----------EEEEECSSSSCCEEEEEE-CSSCEEEEET-TT
T ss_pred             CCCCCceeEEECCCC-CEEEeccCCceEEEECCC-Cc-----------eEEEeCCCCCCccceEEe-cCCCEEEEec-CC
Confidence            344678999999998 566666577899999973 22           111112234467899999 8887555544 55


Q ss_pred             eEEEEe
Q 040307          333 KLQLLK  338 (339)
Q Consensus       333 ~v~~w~  338 (339)
                      .+..++
T Consensus       287 ~l~~~~  292 (299)
T 2z2n_A          287 KIGKLT  292 (299)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=1e-16  Score=137.50  Aligned_cols=232  Identities=11%  Similarity=-0.025  Sum_probs=146.5

Q ss_pred             CceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           73 TPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      .+..++|+|++     +.|+...    + .|.+|++.+++  .......+.     .....+.|+| +++.|+.++.++.
T Consensus        37 ~~~~~~~SpdG-----~~l~~~~~~~g~~~l~~~d~~~~~--~~~l~~~~~-----~~~~~~~~sp-dg~~l~~~~~~~~  103 (396)
T 3c5m_A           37 YFYQKCFTQDG-----KKLLFAGDFDGNRNYYLLNLETQQ--AVQLTEGKG-----DNTFGGFIST-DERAFFYVKNELN  103 (396)
T ss_dssp             CTTSCCBCTTS-----CEEEEEECTTSSCEEEEEETTTTE--EEECCCSSC-----BCTTTCEECT-TSSEEEEEETTTE
T ss_pred             eeecCcCCCCC-----CEEEEEEecCCCceEEEEECCCCc--EEEeecCCC-----CccccceECC-CCCEEEEEEcCCc
Confidence            37888999999     6666542    2 68888888775  322222221     2222378998 9999999999999


Q ss_pred             EEEEECCCCeeeeeeeccCCceeE-------------------EEec-CCcEEEEE-----eCCCcEEEEECCCCcceee
Q 040307          148 CVIWDIDREILETQLVAHDREVYD-------------------ISWG-GFNVFASV-----SGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~-~~~~l~~~-----~~d~~i~i~d~~~~~~~~~  202 (339)
                      |++||+.+++.......+......                   +.|+ +++.++..     ..+..|.+||+.+++....
T Consensus       104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence            999999888755554434332222                   2334 34433332     3566899999988764433


Q ss_pred             EEeCCCCCCCeEEEEEecCCCCeEEEEeeCC-----CeEEEEecCCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEe
Q 040307          203 IYENPVQDCPLLRLEWNKADPRFMATVGMDS-----NKVVVLDIRFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-----~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~  275 (339)
                      . .   +...+..+.|+|.++..|+..+.+.     ..|.+||+.. .. ...+..+  ...+..++|+|++. .|+.++
T Consensus       184 ~-~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~-~l~~~~  256 (396)
T 3c5m_A          184 H-Q---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGS-AMAYVS  256 (396)
T ss_dssp             E-E---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSS-CEEEEE
T ss_pred             c-c---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCC-EEEEEe
Confidence            3 2   2457889999985566666555432     1388898864 32 3333333  23578899999994 666554


Q ss_pred             CC-----CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC-CCCceEEEe----------------cCCe
Q 040307          276 DD-----SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP-LELDWIAIA----------------FVNK  333 (339)
Q Consensus       276 ~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~----------------~d~~  333 (339)
                      .+     +.|++||+..+.             ......... .. +.|+| +++.+++++                .+..
T Consensus       257 ~~~~~~~~~l~~~d~~~g~-------------~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          257 YFKGQTDRVIYKANPETLE-------------NEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             EETTTCCEEEEEECTTTCC-------------EEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             cCCCCccceEEEEECCCCC-------------eEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence            33     349999988766             222221222 23 89999 998666544                2467


Q ss_pred             EEEEeC
Q 040307          334 LQLLKV  339 (339)
Q Consensus       334 v~~w~v  339 (339)
                      |.+|++
T Consensus       322 i~~~d~  327 (396)
T 3c5m_A          322 LYVLNT  327 (396)
T ss_dssp             EEEEET
T ss_pred             EEEEec
Confidence            888864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=5e-15  Score=120.21  Aligned_cols=238  Identities=9%  Similarity=0.018  Sum_probs=162.6

Q ss_pred             CeeEEEeeecCCcccEEE-EeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           19 PISTVAWSVRHDRKSRLA-VGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la-~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      .+.+++++|+   +++++ +..    .++.|.+|+  ..+.....   ....+...+.++++.+++     .++++..+ 
T Consensus        25 ~p~~i~~~~~---g~l~v~~~~----~~~~i~~~~--~~~~~~~~---~~~~~~~~p~~i~~~~~g-----~l~v~~~~~   87 (270)
T 1rwi_B           25 SPSGVAVDSA---GNVYVTSEG----MYGRVVKLA--TGSTGTTV---LPFNGLYQPQGLAVDGAG-----TVYVTDFNN   87 (270)
T ss_dssp             CEEEEEECTT---CCEEEEECS----SSCEEEEEC--C-----EE---CCCCSCCSCCCEEECTTC-----CEEEEETTT
T ss_pred             CccceEECCC---CCEEEEccC----CCCcEEEec--CCCcccce---EeeCCcCCcceeEECCCC-----CEEEEcCCC
Confidence            7889999999   88666 435    578898855  33332221   112334568899999998     77777655 


Q ss_pred             cEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307           97 SLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                      .|.+|+.+....   ..+. ...     ..+.+++++| +++++++...++.|.+|+..+.............+.+++++
T Consensus        88 ~i~~~d~~~~~~---~~~~~~~~-----~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~  158 (270)
T 1rwi_B           88 RVVTLAAGSNNQ---TVLPFDGL-----NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  158 (270)
T ss_dssp             EEEEECTTCSCC---EECCCCSC-----SSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC
T ss_pred             EEEEEeCCCceE---eeeecCCc-----CCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe
Confidence            999999876542   2221 111     4688999998 88888877778999999865544332222233457889999


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307          176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH  254 (339)
Q Consensus       176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~  254 (339)
                       +++++++...++.|.+||...........   .....+..++++| ++.++++...++. |.+||... .........+
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~-~g~l~v~~~~~~~-v~~~~~~~-~~~~~~~~~~  232 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDE-AGTVYVTEHNTNQ-VVKLLAGS-TTSTVLPFTG  232 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECT-TCCEEEEETTTSC-EEEECTTC-SCCEECCCCS
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECC-CCCEEEEECCCCc-EEEEcCCC-CcceeeccCC
Confidence             67777777778899999988765322211   1225688999998 7766666556667 99999865 2222212223


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ...+.+++++|++ .++++...++.|+++++...+
T Consensus       233 ~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          233 LNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence            3578999999999 588888899999999988765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=3.7e-13  Score=119.85  Aligned_cols=304  Identities=9%  Similarity=0.002  Sum_probs=196.5

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEc----C
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFF----P   81 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~   81 (339)
                      .+++.+.++.....+..+.|+|+   +++|.+++    .++.|.+||+...+.+...  .  .........++|+    |
T Consensus       185 ~t~~v~~~i~~g~~p~~v~~SpD---Gr~lyv~~----~dg~V~viD~~~~t~~~v~--~--i~~G~~P~~ia~s~~~~p  253 (567)
T 1qks_A          185 STYEIKTVLDTGYAVHISRLSAS---GRYLFVIG----RDGKVNMIDLWMKEPTTVA--E--IKIGSEARSIETSKMEGW  253 (567)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTT---SCEEEEEE----TTSEEEEEETTSSSCCEEE--E--EECCSEEEEEEECCSTTC
T ss_pred             CCCeEEEEEeCCCCccceEECCC---CCEEEEEc----CCCeEEEEECCCCCCcEeE--E--EecCCCCceeEEccccCC
Confidence            34566777777778889999999   99999988    6899999887423333332  2  2334457899999    6


Q ss_pred             CCCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCC--Cc---cC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307           82 SEETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNK--TS---EF-SSAITSFDWAGFDTRRVATCSVDTTCVIWD  152 (339)
Q Consensus        82 ~~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~--~~---~~-~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d  152 (339)
                      ++     ++++++.  . .+.++|..+.+  .+..+....  ..   .+ ...+..+..++....+++....+|.|.++|
T Consensus       254 DG-----k~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd  326 (567)
T 1qks_A          254 ED-----KYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  326 (567)
T ss_dssp             TT-----TEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             CC-----CEEEEEEccCCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence            99     7777665  2 99999988876  554443211  00   00 136778888874455666667789999999


Q ss_pred             CCCCeee--eeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcceeeEEe-C-CCCCCCeEEEEEecCCCCeE
Q 040307          153 IDREILE--TQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERSTIIYE-N-PVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       153 ~~~~~~~--~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~-~~~~~~v~~~~~~p~~~~~l  226 (339)
                      ....+.+  ..+ .......++.|+ ++++|+++. .++.|.++|+.+++....+.. . ..|.+.-..+ ++|..+.+.
T Consensus       327 ~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~  404 (567)
T 1qks_A          327 YTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW  404 (567)
T ss_dssp             TTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred             cCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence            8765422  223 234456788999 777776655 578999999999875544433 1 1122222222 577335555


Q ss_pred             EEEee-CCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCCCCeEEEEeC-------CCcEEEEEecCCCCCC
Q 040307          227 ATVGM-DSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD-------DSRALIWEVVGPGYRS  292 (339)
Q Consensus       227 ~~~~~-d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------dg~v~iwd~~~~~~~~  292 (339)
                      +++.. ++. |.++|....      .+.+.++......-..+..+|++ ++|.+...       .+.|.++|+.+.+. .
T Consensus       405 ~t~~~g~~~-Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~-~  481 (567)
T 1qks_A          405 ATSHMGDDS-VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTG-D  481 (567)
T ss_dssp             EEEBSSSSE-EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCC-S
T ss_pred             EeCCCCCCe-EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccc-c
Confidence            55543 355 999998752      23456666544444568899999 47776552       35999999998720 0


Q ss_pred             CCCCCCCcccceeee---------cccceeEEEEecCCCCceEEEe-----cCCeEEEEe
Q 040307          293 GNGGPSGDVEPELCY---------QSMAEINVVRWSPLELDWIAIA-----FVNKLQLLK  338 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~---------~~~~~i~~~~~~p~~~~l~~~~-----~d~~v~~w~  338 (339)
                            +........         .....+..+.|+|+|.++..+.     .++.|.+++
T Consensus       482 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          482 ------GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             ------SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ------ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence                  000111111         1245789999999999876553     268888876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=5.4e-15  Score=119.98  Aligned_cols=234  Identities=10%  Similarity=-0.008  Sum_probs=156.3

Q ss_pred             CceEEEEcCCCCCCCCCeEE-EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307           73 TPTNIAFFPSEETLNPDIVA-TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la-~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      .+.++++++++     ++++ +.. + .|.+|+..+..  .........     ..+.++++++ +++++++.. ++.|.
T Consensus        25 ~p~~i~~~~~g-----~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~-----~~p~~i~~~~-~g~l~v~~~-~~~i~   90 (270)
T 1rwi_B           25 SPSGVAVDSAG-----NVYVTSEGMYGRVVKLATGSTG--TTVLPFNGL-----YQPQGLAVDG-AGTVYVTDF-NNRVV   90 (270)
T ss_dssp             CEEEEEECTTC-----CEEEEECSSSCEEEEECC-------EECCCCSC-----CSCCCEEECT-TCCEEEEET-TTEEE
T ss_pred             CccceEECCCC-----CEEEEccCCCCcEEEecCCCcc--cceEeeCCc-----CCcceeEECC-CCCEEEEcC-CCEEE
Confidence            67899999999     7777 533 3 89999876553  111111111     4577899997 778666655 88999


Q ss_pred             EEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          150 IWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       150 i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      +||................+..++++ +++++++...++.|.+|+..+......  .. .....+..++++| +++++++
T Consensus        91 ~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~-~~~~~p~~i~~~~-~g~l~v~  166 (270)
T 1rwi_B           91 TLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PF-TGLNDPDGVAVDN-SGNVYVT  166 (270)
T ss_dssp             EECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CC-CSCCSCCCEEECT-TCCEEEE
T ss_pred             EEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--cc-ccCCCceeEEEeC-CCCEEEE
Confidence            99987654322211223568899999 677777777788999998665442221  11 1223567899998 7776666


Q ss_pred             EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307          229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ  308 (339)
Q Consensus       229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  308 (339)
                      ...++. |.+||... .........+...+.+++++++| .++++...++.|.+|+.....            .......
T Consensus       167 ~~~~~~-i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~------------~~~~~~~  231 (270)
T 1rwi_B          167 DTDNNR-VVKLEAES-NNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT------------STVLPFT  231 (270)
T ss_dssp             EGGGTE-EEEECTTT-CCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSC------------CEECCCC
T ss_pred             ECCCCE-EEEEecCC-CceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCc------------ceeeccC
Confidence            555666 99999875 32222222233578899999998 577777788899999986644            1111122


Q ss_pred             ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          309 SMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +...+.+++++|+|..+++...++.|+++++
T Consensus       232 ~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          232 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             SCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            3356899999999986667778999999874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=1.2e-15  Score=140.57  Aligned_cols=278  Identities=11%  Similarity=-0.026  Sum_probs=173.3

Q ss_pred             eeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee---EeecCCCCceEEEEcCCCCCCCCCeEE-----EeCC
Q 040307           25 WSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR---LIFDHPYTPTNIAFFPSEETLNPDIVA-----TSGD   96 (339)
Q Consensus        25 ~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~~~la-----~~~~   96 (339)
                      .+|+   |.+++......+ ...-.||..+..++.......   +..+|...+..++||||+     ++||     .|++
T Consensus        75 p~~d---G~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-----~~la~~~~~~G~~  145 (695)
T 2bkl_A           75 PSRR---NGRFFYVRTHKD-KEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG-----KKVAFAQKPNAAD  145 (695)
T ss_dssp             CEEE---TTEEEEEEECTT-CSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS-----SEEEEEEEETTCS
T ss_pred             CEEE---CCEEEEEEEcCC-CeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC-----CEEEEEECCCCCc
Confidence            3488   888888774111 114556656544443332000   011355578999999999     7887     3443


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe-------------EEEEECCCCe----
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT-------------CVIWDIDREI----  157 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-------------v~i~d~~~~~----  157 (339)
                        .|++||+.+++......+..       .....++|+| +++.|+.++.|..             |++|++.++.    
T Consensus       146 ~~~i~v~dl~tg~~~~~~~~~~-------~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~  217 (695)
T 2bkl_A          146 EAVLHVIDVDSGEWSKVDVIEG-------GKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT  217 (695)
T ss_dssp             CCEEEEEETTTCCBCSSCCBSC-------CTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE
T ss_pred             eEEEEEEECCCCCCcCCcccCc-------ccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce
Confidence              89999999987320111111       1125789998 9999999988776             9999998776    


Q ss_pred             eeeeeeccCCceeEEEec-CCcEEEEEeCCC----cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-
Q 040307          158 LETQLVAHDREVYDISWG-GFNVFASVSGDC----SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-  231 (339)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-  231 (339)
                      .+.....+...+..+.|+ ++++|+.++.++    .|+++|..++. ...+...   ...+....| | ++.+++.... 
T Consensus       218 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~---~~~~~~~~~-~-~g~l~~~s~~~  291 (695)
T 2bkl_A          218 VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG---VGAKYEVHA-W-KDRFYVLTDEG  291 (695)
T ss_dssp             EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC---SSCCEEEEE-E-TTEEEEEECTT
T ss_pred             EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC---CCceEEEEe-c-CCcEEEEECCC
Confidence            222333455678899999 788888777665    67777665544 2333322   234556666 4 4454444332 


Q ss_pred             --CCCeEEEEecCCCCC-ceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307          232 --DSNKVVVLDIRFPTN-PVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC  306 (339)
Q Consensus       232 --d~~~i~i~d~~~~~~-~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  306 (339)
                        ++. |.+||+..... ....+..+  ...+..++|+ ++ .++++...|+..+||.+....          . ....+
T Consensus       292 ~~~~~-l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g----------~-~~~~l  357 (695)
T 2bkl_A          292 APRQR-VFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKG----------K-PVRTV  357 (695)
T ss_dssp             CTTCE-EEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTC----------C-EEEEC
T ss_pred             CCCCE-EEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC----------C-eeEEe
Confidence              344 99999876321 12444433  4467888888 54 688999999999999877433          0 11122


Q ss_pred             e-cccceeEEEEecCCCCceEEEe----cCCeEEEEeC
Q 040307          307 Y-QSMAEINVVRWSPLELDWIAIA----FVNKLQLLKV  339 (339)
Q Consensus       307 ~-~~~~~i~~~~~~p~~~~l~~~~----~d~~v~~w~v  339 (339)
                      . .....|..++++|++..++...    ..+.|++|++
T Consensus       358 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          358 QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            2 2356788899999987666322    3467888764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=1.1e-14  Score=123.16  Aligned_cols=273  Identities=10%  Similarity=0.054  Sum_probs=166.9

Q ss_pred             ccEEEEeee--ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----------C-c
Q 040307           32 KSRLAVGSF--LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----------D-S   97 (339)
Q Consensus        32 ~~~la~g~~--~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----------~-~   97 (339)
                      ++++.+...  ....|+.|.+||.  .+.+...  .+ ..+..+  .++|+|++     +++.++.           + .
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~--~t~~~~~--~i-~~g~~p--~i~~spdg-----~~lyv~~~~~~~~~~g~~~~~   82 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDY--TNGKFLG--MV-PTAFNG--HVQVSNDG-----KKIYTMTTYHERITRGKRSDV   82 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEET--TTCCEEE--EE-ECCEEE--EEEECTTS-----SEEEEEEEEETTSSSSCEEEE
T ss_pred             CCEEEEECCCCCccccCeEEEEEC--CCCeEEE--Ee-cCCCCC--ceEECCCC-----CEEEEEEecccccccCCCCCE
Confidence            555555431  1113679999664  3444433  33 223333  89999999     6665542           2 7


Q ss_pred             EEEEeecCCcceeEEEeecCCC-ccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeee-eeccCCceeEEE
Q 040307           98 LRLWEIHDDRTELKSLLNSNKT-SEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQ-LVAHDREVYDIS  173 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~-~~~~~~~v~~~~  173 (339)
                      |.+||..+.+  ....+..... .........++++| ++++|+++..  ++.|.+||+.+++.+.. +. ... ...+.
T Consensus        83 v~v~d~~t~~--~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~  157 (361)
T 2oiz_A           83 VEVWDADKLT--FEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVI  157 (361)
T ss_dssp             EEEEETTTCC--EEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEE
T ss_pred             EEEEECcCCc--EEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeE
Confidence            9999998776  5555543210 00013456799998 9999988874  58999999999988777 54 222 22244


Q ss_pred             ec--CCcEEEEEeCCCcEEEEECCCCccee-eEE---eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307          174 WG--GFNVFASVSGDCSVRVFDLRDKERST-IIY---ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP  247 (339)
Q Consensus       174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~  247 (339)
                      +.  ....+++.+.||.+.+|++....... ...   .......+ ..+.+.| ++..++..+.++. +.++|+......
T Consensus       158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~-v~v~d~~~~~~~  234 (361)
T 2oiz_A          158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGN-VYSADFSGDEVK  234 (361)
T ss_dssp             ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSE-EEEEECSSSSCE
T ss_pred             EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCe-EEEEEecCCCce
Confidence            44  24688889999999999987533222 111   00011122 2344455 5666666777777 999998753221


Q ss_pred             e-EEEec------CC----CCeeEEEeccCCCCeEEEEe----------CCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307          248 V-VVLSK------HE----GSVNGISWAPLYGRRLCSVA----------DDSRALIWEVVGPGYRSGNGGPSGDVEPELC  306 (339)
Q Consensus       248 ~-~~~~~------~~----~~v~~~~~~p~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  306 (339)
                      + ..+..      +.    .....++|+|++.+++++..          ..+.|.+||+.+.+             .+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-------------~v~~  301 (361)
T 2oiz_A          235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-------------RVAR  301 (361)
T ss_dssp             EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-------------EEEE
T ss_pred             ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-------------EEEE
Confidence            1 11110      00    11223789999854444433          13479999998877             3433


Q ss_pred             ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          307 YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       307 ~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ..... +.+++|+|+|++|++++. +.|.+|++
T Consensus       302 i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          302 IPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             EECTT-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             EecCC-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            32233 999999999998777776 99999984

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=1.7e-14  Score=118.82  Aligned_cols=227  Identities=7%  Similarity=-0.075  Sum_probs=153.0

Q ss_pred             cCCCCceEEEEcCCCCCCCCC-eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           69 DHPYTPTNIAFFPSEETLNPD-IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~-~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+.....+++|+|++     + +++++. + .|..|+.+++    ...+..+.     ..+.+++++| +++++++...+
T Consensus        25 ~~~~~~eg~~~d~~g-----~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~-----~~~~~l~~~~-dg~l~v~~~~~   89 (296)
T 3e5z_A           25 DGFTWTEGPVYVPAR-----SAVIFSDVRQNRTWAWSDDGQ----LSPEMHPS-----HHQNGHCLNK-QGHLIACSHGL   89 (296)
T ss_dssp             CCCSSEEEEEEEGGG-----TEEEEEEGGGTEEEEEETTSC----EEEEESSC-----SSEEEEEECT-TCCEEEEETTT
T ss_pred             cCCccccCCeEeCCC-----CEEEEEeCCCCEEEEEECCCC----eEEEECCC-----CCcceeeECC-CCcEEEEecCC
Confidence            455667899999999     6 777766 3 9999998875    23333343     6789999998 88888877777


Q ss_pred             CeEEEEECCCCeeeeeeecc----CCceeEEEec-CCcEEEEEeC-----------------CCcEEEEECCCCcceeeE
Q 040307          146 TTCVIWDIDREILETQLVAH----DREVYDISWG-GFNVFASVSG-----------------DCSVRVFDLRDKERSTII  203 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~----~~~v~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~  203 (339)
                      +.|.+||..+++........    ...+.+++++ +++++++.+.                 .+.|..++.. ++ ....
T Consensus        90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~  167 (296)
T 3e5z_A           90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP  167 (296)
T ss_dssp             TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred             CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence            99999999877644332211    2346679999 6887776321                 2355555554 32 2222


Q ss_pred             EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc---eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE
Q 040307          204 YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP---VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA  280 (339)
Q Consensus       204 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  280 (339)
                      ..   +......++|+| +++.+++.+.++. |.+||+...+..   ...+..+...+.+++++++| +++++.  ++.|
T Consensus       168 ~~---~~~~~~gi~~s~-dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v  239 (296)
T 3e5z_A          168 IR---DRVKPNGLAFLP-SGNLLVSDTGDNA-THRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGV  239 (296)
T ss_dssp             EC---CCSSEEEEEECT-TSCEEEEETTTTE-EEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEE
T ss_pred             ec---CCCCCccEEECC-CCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeE
Confidence            22   345678999998 8888866555666 999998733333   22333345567899999999 455555  7899


Q ss_pred             EEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEe-cCCCCceEEEecCCeEE
Q 040307          281 LIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRW-SPLELDWIAIAFVNKLQ  335 (339)
Q Consensus       281 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-~p~~~~l~~~~~d~~v~  335 (339)
                      .+|+.. ++             .+ ....+.. +++++| +|+++.|++++.++..+
T Consensus       240 ~~~~~~-g~-------------~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          240 HVLTPD-GD-------------ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             EEECTT-SC-------------EEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             EEECCC-CC-------------EEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            999976 33             23 2333444 899999 58888777777764433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=2.8e-14  Score=119.24  Aligned_cols=258  Identities=7%  Similarity=-0.067  Sum_probs=167.8

Q ss_pred             cCCeEEEEecCCCCCcccceeeE---eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC
Q 040307           44 YSNKIELVNFNPETSDFSADNRL---IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK  118 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~  118 (339)
                      .++.|.++|.  ++.++......   ..........+.+.. +     +++++.. + .|.+||..+.+  .+.++... 
T Consensus        15 ~~~~l~~~d~--~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~-----~lyv~~~~~~~v~viD~~t~~--~~~~i~~~-   83 (328)
T 3dsm_A           15 SNATLSYYDP--ATCEVENEVFYRANGFKLGDVAQSMVIRD-G-----IGWIVVNNSHVIFAIDINTFK--EVGRITGF-   83 (328)
T ss_dssp             CCBEEEEEET--TTTEEECSHHHHHHSSCCBSCEEEEEEET-T-----EEEEEEGGGTEEEEEETTTCC--EEEEEECC-
T ss_pred             CCceEEEEEC--CCCEEhhhhHhhhcCcccCccceEEEEEC-C-----EEEEEEcCCCEEEEEECcccE--EEEEcCCC-
Confidence            4789999554  44444321000   011224467788754 3     5656555 3 99999999887  55555432 


Q ss_pred             CccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC-----CceeEEEecCCcEEEEEe-CCCcEEEE
Q 040307          119 TSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD-----REVYDISWGGFNVFASVS-GDCSVRVF  192 (339)
Q Consensus       119 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~-~d~~i~i~  192 (339)
                           .....+++++ ++.++++...++.|.+||+.+++....+....     .....+++.++.++++.. .++.|.++
T Consensus        84 -----~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~vi  157 (328)
T 3dsm_A           84 -----TSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKI  157 (328)
T ss_dssp             -----SSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEE
T ss_pred             -----CCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEE
Confidence                 5678999987 77555554489999999999998776665322     145567775444444443 48899999


Q ss_pred             ECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC----------CCeEEEEecCCCCCceEEEecC-CCCeeEE
Q 040307          193 DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD----------SNKVVVLDIRFPTNPVVVLSKH-EGSVNGI  261 (339)
Q Consensus       193 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~  261 (339)
                      |+.+.+....+...    .....++++| ++++++++..+          +. |.++|..+ .+....+... ......+
T Consensus       158 D~~t~~~~~~i~~g----~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t-~~v~~~~~~~~g~~p~~l  230 (328)
T 3dsm_A          158 DTETDKVVDELTIG----IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPS-LYRIDAET-FTVEKQFKFKLGDWPSEV  230 (328)
T ss_dssp             ETTTTEEEEEEECS----SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCE-EEEEETTT-TEEEEEEECCTTCCCEEE
T ss_pred             ECCCCeEEEEEEcC----CCccceEEcC-CCCEEEEECCCccCCccccCCce-EEEEECCC-CeEEEEEecCCCCCceeE
Confidence            99988755444332    3456889998 78876665544          55 99999876 4444455432 2368899


Q ss_pred             EeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceE-EE----ecCCeEE
Q 040307          262 SWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWI-AI----AFVNKLQ  335 (339)
Q Consensus       262 ~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~-~~----~~d~~v~  335 (339)
                      +|+|++ +.|.++..  .|.+||..+.+           +...... ........++++|++..++ +.    ..++.|.
T Consensus       231 a~~~d~-~~lyv~~~--~v~~~d~~t~~-----------~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~  296 (328)
T 3dsm_A          231 QLNGTR-DTLYWINN--DIWRMPVEADR-----------VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY  296 (328)
T ss_dssp             EECTTS-CEEEEESS--SEEEEETTCSS-----------CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred             EEecCC-CEEEEEcc--EEEEEECCCCc-----------eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence            999998 47776654  89999987766           1011111 1245688999999554455 44    4678899


Q ss_pred             EEeC
Q 040307          336 LLKV  339 (339)
Q Consensus       336 ~w~v  339 (339)
                      +|+.
T Consensus       297 v~d~  300 (328)
T 3dsm_A          297 RYSP  300 (328)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8863

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=3.3e-14  Score=117.05  Aligned_cols=235  Identities=11%  Similarity=0.013  Sum_probs=159.9

Q ss_pred             cCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           17 QWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      .....+++|+|+   ++ +++++.    .++.|..|+.+  +. ..   .+ ..+...+.+++++|++     +++++..
T Consensus        27 ~~~~eg~~~d~~---g~~l~~~~~----~~~~i~~~~~~--~~-~~---~~-~~~~~~~~~l~~~~dg-----~l~v~~~   87 (296)
T 3e5z_A           27 FTWTEGPVYVPA---RSAVIFSDV----RQNRTWAWSDD--GQ-LS---PE-MHPSHHQNGHCLNKQG-----HLIACSH   87 (296)
T ss_dssp             CSSEEEEEEEGG---GTEEEEEEG----GGTEEEEEETT--SC-EE---EE-ESSCSSEEEEEECTTC-----CEEEEET
T ss_pred             CccccCCeEeCC---CCEEEEEeC----CCCEEEEEECC--CC-eE---EE-ECCCCCcceeeECCCC-----cEEEEec
Confidence            456779999999   88 677777    68899986654  33 22   22 3466779999999999     8888775


Q ss_pred             C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE----Ee-------------CCCeEEEEECCCC
Q 040307           96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT----CS-------------VDTTCVIWDIDRE  156 (339)
Q Consensus        96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~-------------~d~~v~i~d~~~~  156 (339)
                      +  .|.+|+..+++....  ....... ....+..++++| +++++++    |+             ..+.|..++.. +
T Consensus        88 ~~~~i~~~d~~~g~~~~~--~~~~~~~-~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (296)
T 3e5z_A           88 GLRRLERQREPGGEWESI--ADSFEGK-KLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G  162 (296)
T ss_dssp             TTTEEEEECSTTCCEEEE--ECEETTE-ECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred             CCCeEEEEcCCCCcEEEE--eeccCCC-CCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence            3  899999977763222  2111100 013567899998 8888887    33             13466666655 4


Q ss_pred             eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECC-CCcc-e-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          157 ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLR-DKER-S-TIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~-~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      + ...+..+......++|+ +++.+++.+.++.|.+||+. .+.. . ...+.  .+...+..+++++ +|+++++.  +
T Consensus       163 ~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~p~~i~~d~-~G~l~v~~--~  236 (296)
T 3e5z_A          163 T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT--VEPGKTDGLRVDA-GGLIWASA--G  236 (296)
T ss_dssp             C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC--CSSSCCCSEEEBT-TSCEEEEE--T
T ss_pred             C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee--CCCCCCCeEEECC-CCCEEEEc--C
Confidence            4 33444556677899999 78877777778999999997 3332 1 12222  2345667899997 78766655  6


Q ss_pred             CCeEEEEecCCCCCceEEEecCCCCeeEEEe-ccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISW-APLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +. |.+||..  ++.+..+..+.. +.+++| +|++ +.|++++.+   .+|.++...
T Consensus       237 ~~-v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~-~~L~v~t~~---~l~~~~~~~  286 (296)
T 3e5z_A          237 DG-VHVLTPD--GDELGRVLTPQT-TSNLCFGGPEG-RTLYMTVST---EFWSIETNV  286 (296)
T ss_dssp             TE-EEEECTT--SCEEEEEECSSC-CCEEEEESTTS-CEEEEEETT---EEEEEECSC
T ss_pred             Ce-EEEECCC--CCEEEEEECCCC-ceeEEEECCCC-CEEEEEcCC---eEEEEEccc
Confidence            66 9999985  556777777777 999999 5887 577777765   355555443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=1.6e-14  Score=133.46  Aligned_cols=247  Identities=12%  Similarity=0.051  Sum_probs=163.5

Q ss_pred             CeeEEEeeecCCcccEEEEeeecccc-CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDY-SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      .+..++||||   |++||++...++. ...|++|++.  +++...  .. ..+ ..+..++|+||+     +.|+.++ +
T Consensus       126 ~~~~~~~SPD---g~~la~~~~~~G~~~~~i~v~d~~--tg~~~~--~~-~~~-~~~~~~~wspDg-----~~l~~~~~~  191 (710)
T 2xdw_A          126 ALRGYAFSED---GEYFAYGLSASGSDWVTIKFMKVD--GAKELP--DV-LER-VKFSCMAWTHDG-----KGMFYNAYP  191 (710)
T ss_dssp             EEEEEEECTT---SSEEEEEEEETTCSCEEEEEEETT--TTEEEE--EE-EEE-ECSCCEEECTTS-----SEEEEEECC
T ss_pred             EEEEEEECCC---CCEEEEEEcCCCCceEEEEEEECC--CCCCCc--cc-ccC-cccceEEEEeCC-----CEEEEEEEC
Confidence            5788999999   9999988731111 1278886654  444443  11 221 236789999999     6666554 3


Q ss_pred             -c----------------EEEEeecCCcceeEEEeec--CCCccCCCCEEEEEEcCCCCCEEEEEeC-----CCeEEEEE
Q 040307           97 -S----------------LRLWEIHDDRTELKSLLNS--NKTSEFSSAITSFDWAGFDTRRVATCSV-----DTTCVIWD  152 (339)
Q Consensus        97 -~----------------i~iw~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~v~i~d  152 (339)
                       .                |++|++.+++......+..  +.     ..+..+.|+| ++++|+.++.     +..|++||
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~-----~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d  265 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP-----KWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCD  265 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT-----TCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEE
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC-----eEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEE
Confidence             3                9999998875332233332  22     4578999998 9998888765     67899999


Q ss_pred             CCC------Ce-eeeeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEE
Q 040307          153 IDR------EI-LETQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVFDLRDKER--STIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       153 ~~~------~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~  218 (339)
                      +.+      +. ....+..+...+... |+ +++.|+..+..    ..|.+||+.++..  ...+... .....+..++|
T Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~  343 (710)
T 2xdw_A          266 LQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE-HEKDVLEWVAC  343 (710)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSCEEEEEEE
T ss_pred             CcccccccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC-CCCCeEEEEEE
Confidence            976      43 355566666665553 55 66766655543    3599999987642  2233322 11135778999


Q ss_pred             ecCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCC
Q 040307          219 NKADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPG  289 (339)
Q Consensus       219 ~p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~  289 (339)
                      ++ ++.++++...++. .|.+||+.. ++.+..+..+.+.+..+.++|++..++++.+   ..+.+.+||+.+++
T Consensus       344 ~~-~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          344 VR-SNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ET-TTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             Ec-CCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            85 7778888888875 366777654 4556777777788999999999854444444   34789999987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=2.3e-14  Score=120.04  Aligned_cols=238  Identities=9%  Similarity=0.066  Sum_probs=159.3

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEe-CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATS-GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC  148 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v  148 (339)
                      ...|.++.|+++.     ..++.. ++ .++.|   ..+  ....+..+.     ..+.+++|+| ++++++++..++.|
T Consensus         5 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~--~~~~~~~~~-----~~~~~~~~~~-~g~l~~~~~~~~~i   68 (333)
T 2dg1_A            5 QQDLPTLFYSGKS-----NSAVPIISESELQTI---TAE--PWLEISKKG-----LQLEGLNFDR-QGQLFLLDVFEGNI   68 (333)
T ss_dssp             -CCCCBCCSCGGG-----GCSSCCCCGGGSCEE---ECE--EEEEEESSC-----CCEEEEEECT-TSCEEEEETTTCEE
T ss_pred             ccccceeeecCCc-----cceeEEeecccCccc---ccc--eeEEEeccC-----ccccCcEECC-CCCEEEEECCCCEE
Confidence            3457888999988     444443 34 88888   222  445555544     5678999997 88888888889999


Q ss_pred             EEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307          149 VIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      .+||..+++.......+...+.+++++ +++++++...+    +.|.+||..+....... ........+..++++| ++
T Consensus        69 ~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~-~g  146 (333)
T 2dg1_A           69 FKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDS-KG  146 (333)
T ss_dssp             EEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECT-TS
T ss_pred             EEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECC-CC
Confidence            999998877554443466789999999 67777776666    68999998877643222 2112345789999998 77


Q ss_pred             CeEEEEee------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307          224 RFMATVGM------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       224 ~~l~~~~~------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  297 (339)
                      +++++...      .+. |..+|... .+ +..+..+...+..++|+|++..++++.+.++.|.+|++.....       
T Consensus       147 ~l~v~~~~~~~~~~~~~-l~~~~~~~-~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~-------  216 (333)
T 2dg1_A          147 GFYFTDFRGYSTNPLGG-VYYVSPDF-RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV-------  216 (333)
T ss_dssp             CEEEEECCCBTTBCCEE-EEEECTTS-CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS-------
T ss_pred             CEEEEeccccccCCCce-EEEEeCCC-CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc-------
Confidence            77766543      133 66666543 22 3333333456789999999842445555678999999964320       


Q ss_pred             CCcccc---eee--ecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          298 SGDVEP---ELC--YQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       298 ~~~~~~---~~~--~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                        ....   ...  ......+..++++++|..+++...++.|.+|+
T Consensus       217 --~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          217 --TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             --SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             --CcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence              0000   011  11114678899999998666777788999886

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.69  E-value=2e-15  Score=139.04  Aligned_cols=246  Identities=10%  Similarity=0.014  Sum_probs=160.6

Q ss_pred             CeeEEEeeecCCcccEEEEeeec-cccCCeEEEEecCCCCCccc-ceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFL-EDYSNKIELVNFNPETSDFS-ADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~-~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      .+.+++||||   |++||.+... +..+..|++|++...  +.. .  .. ... .....++|+||+     +.|+.++ 
T Consensus       122 ~~~~~~~SPD---G~~la~~~~~~G~~~~~i~v~dl~tg--~~~~~--~~-~~~-~~~~~~~wspDg-----~~l~~~~~  187 (695)
T 2bkl_A          122 SLGTWAVSWD---GKKVAFAQKPNAADEAVLHVIDVDSG--EWSKV--DV-IEG-GKYATPKWTPDS-----KGFYYEWL  187 (695)
T ss_dssp             EEEEEEECTT---SSEEEEEEEETTCSCCEEEEEETTTC--CBCSS--CC-BSC-CTTCCCEECTTS-----SEEEEEEC
T ss_pred             EEEEEEECCC---CCEEEEEECCCCCceEEEEEEECCCC--CCcCC--cc-cCc-ccccceEEecCC-----CEEEEEEe
Confidence            6889999999   9999976531 113568999776543  333 1  00 111 112689999999     6666654 


Q ss_pred             C-c-------------EEEEeecCCcce--eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC----eEEEEECCC
Q 040307           96 D-S-------------LRLWEIHDDRTE--LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT----TCVIWDIDR  155 (339)
Q Consensus        96 ~-~-------------i~iw~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~----~v~i~d~~~  155 (339)
                      + .             |++|++.+++..  .+.....+.     ..+..+.|+| ++++|+.++.++    .|++++..+
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~-----~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~  261 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP-----TTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGE  261 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-----TCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTC
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC-----EEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCC
Confidence            3 4             999999887632  332333333     5688999998 999888877666    677777655


Q ss_pred             CeeeeeeeccCCceeEEEecCCcEEEEEe---CCCcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          156 EILETQLVAHDREVYDISWGGFNVFASVS---GDCSVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                      ++ ...+..+...+....++++.+++...   .++.|.+||+.++..  ...+... .....+..++|+  ++.++++..
T Consensus       262 ~~-~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~l~~~~~~--~~~lv~~~~  337 (695)
T 2bkl_A          262 KD-FRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-DSSASLLSVSIV--GGHLSLEYL  337 (695)
T ss_dssp             SS-CEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC-CSSCEEEEEEEE--TTEEEEEEE
T ss_pred             Cc-eEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC-CCCCeEEEEEEE--CCEEEEEEE
Confidence            54 44455566666666677555444444   257899999987653  1232322 123457788887  667888888


Q ss_pred             eCCCeEEEEecCCCCCceEEEecC-CCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCC
Q 040307          231 MDSNKVVVLDIRFPTNPVVVLSKH-EGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPG  289 (339)
Q Consensus       231 ~d~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~  289 (339)
                      .++. .+||.+...+.....+..+ ...+..++++|+++.++++.+   ..+.|++||+.+++
T Consensus       338 ~dg~-~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          338 KDAT-SEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ETTE-EEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ECCE-EEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8887 7777655334445556555 567888999999853444443   34689999987765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=2.7e-13  Score=120.75  Aligned_cols=272  Identities=13%  Similarity=0.087  Sum_probs=175.4

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeec--CCc
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIH--DDR  107 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~--~~~  107 (339)
                      +.++++..    .++.|.++|  ..+.+...  .  ......+..+.|+|++     +++.+++ + .|.+||+.  +.+
T Consensus       167 ~~~~V~~~----~~~~V~viD--~~t~~v~~--~--i~~g~~p~~v~~SpDG-----r~lyv~~~dg~V~viD~~~~t~~  231 (567)
T 1qks_A          167 NLFSVTLR----DAGQIALID--GSTYEIKT--V--LDTGYAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPT  231 (567)
T ss_dssp             GEEEEEET----TTTEEEEEE--TTTCCEEE--E--EECSSCEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCC
T ss_pred             ceEEEEeC----CCCeEEEEE--CCCCeEEE--E--EeCCCCccceEECCCC-----CEEEEEcCCCeEEEEECCCCCCc
Confidence            44455555    689999955  44544443  2  3344567899999999     6666555 4 99999996  554


Q ss_pred             ceeEEEeecCCCccCCCCEEEEEEc----CCCCCEEEEEeC-CCeEEEEECCCCeeeeeeecc----------CC-ceeE
Q 040307          108 TELKSLLNSNKTSEFSSAITSFDWA----GFDTRRVATCSV-DTTCVIWDIDREILETQLVAH----------DR-EVYD  171 (339)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~----------~~-~v~~  171 (339)
                        .+..+...      .....++|+    | ++++++++.. ++.|.++|..+.+.+..+...          .. .+..
T Consensus       232 --~v~~i~~G------~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          232 --TVAEIKIG------SEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             --EEEEEECC------SEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             --EeEEEecC------CCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence              55556543      345789999    5 8887777665 599999999998887766421          12 5667


Q ss_pred             EEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          172 ISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       172 ~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      +..+ + ..+++....+|.|.++|....+........  .......+.|+| ++++++++......|.++|+.+ .+.+.
T Consensus       303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t-~kl~~  378 (567)
T 1qks_A          303 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE-GKLVA  378 (567)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT-TEEEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee--ccccccCceECC-CCCEEEEEeCCCCeEEEEECCC-CcEEE
Confidence            7777 3 456666677899999999876533322221  234677899998 8888877665444499999987 45555


Q ss_pred             EEec-----CCCCeeEEE-eccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceee-ecccceeEEEEecCC
Q 040307          250 VLSK-----HEGSVNGIS-WAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQSMAEINVVRWSPL  321 (339)
Q Consensus       250 ~~~~-----~~~~v~~~~-~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~  321 (339)
                      .+..     |.+  ..+. ++|++..+.+++. .++.|.++|....+. +     ....+.... ......-..+..+|+
T Consensus       379 ~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~-~-----~~~~kvv~~i~~~g~g~~~i~~~p~  450 (567)
T 1qks_A          379 IEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH-P-----DNAWKILDSFPALGGGSLFIKTHPN  450 (567)
T ss_dssp             EEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC-T-----TTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             EEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC-c-----cccCEEEEEEecCCCCCEEEEeCCC
Confidence            5443     222  2233 5787534555554 568999999987430 0     000112222 222223345778999


Q ss_pred             CCceEEEec-------CCeEEEEeC
Q 040307          322 ELDWIAIAF-------VNKLQLLKV  339 (339)
Q Consensus       322 ~~~l~~~~~-------d~~v~~w~v  339 (339)
                      ++++.....       .+.|.++++
T Consensus       451 ~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          451 SQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             CSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             CCeEEEecCCCCCcccCceEEEEEC
Confidence            988776552       457888764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=3e-14  Score=119.99  Aligned_cols=225  Identities=11%  Similarity=0.050  Sum_probs=144.9

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--   95 (339)
                      ..+..++|||+   |+.||++.... .++...||.++..+++...   + ..+.. +..++|+|++     +.|+.++  
T Consensus        59 ~~~~~~~~SpD---g~~la~~~~~~-~~~~~~l~~~~~~~g~~~~---l-~~~~~-~~~~~wspdg-----~~l~~~~~~  124 (347)
T 2gop_A           59 ENATMPRISPD---GKKIAFMRANE-EKKVSEIWVADLETLSSKK---I-LEAKN-IRSLEWNEDS-----RKLLIVGFK  124 (347)
T ss_dssp             ESCEEEEECTT---SSEEEEEEEET-TTTEEEEEEEETTTTEEEE---E-EEESE-EEEEEECTTS-----SEEEEEEEC
T ss_pred             ccCCCeEECCC---CCEEEEEEecc-CCCcceEEEEECCCCceEE---E-EcCCC-ccceeECCCC-----CEEEEEEcc
Confidence            45778999999   99999887311 0156556656665555443   1 22333 9999999999     6666543  


Q ss_pred             --------------------------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC--
Q 040307           96 --------------------------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT--  146 (339)
Q Consensus        96 --------------------------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--  146 (339)
                                                . .|.+|++.+++  ....+.. .      .+..+.|+| ++ +++++..++  
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~------~~~~~~~sp-dg-~~~~~~~~~~~  193 (347)
T 2gop_A          125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P------RFSSGIWHR-DK-IVVNVPHREII  193 (347)
T ss_dssp             CCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E------TTCEEEEET-TE-EEEEEECCCSS
T ss_pred             CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C------CcccccCCC-Ce-EEEEEeccccc
Confidence                                      2 68889988876  3233322 1      356889998 88 777776542  


Q ss_pred             -----eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC--------CcEEEEECCCCcceeeEEeCCCCCCC
Q 040307          147 -----TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD--------CSVRVFDLRDKERSTIIYENPVQDCP  212 (339)
Q Consensus       147 -----~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~  212 (339)
                           ...||.+.+++ ...+..+ ..+..+  + +++.|+.++.+        ..|.+||  +++ ...+..  .+...
T Consensus       194 ~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~--~~~~~  264 (347)
T 2gop_A          194 PQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILD--EVDRG  264 (347)
T ss_dssp             CCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESST--TCCSE
T ss_pred             ccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccc--cCCcc
Confidence                 33444443554 3344444 445544  7 78888777754        3677787  333 222222  24556


Q ss_pred             eEE-EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE-EEEEec
Q 040307          213 LLR-LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA-LIWEVV  286 (339)
Q Consensus       213 v~~-~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v-~iwd~~  286 (339)
                      +.. +.|+  ++ ++++++.++. ++|| +.. ++. ..+..+...|.+++|+| .  ++++++.++.. .||.+.
T Consensus       265 ~~~~~~~s--dg-~~~~~~~~~~-~~l~-~~~-g~~-~~~~~~~~~v~~~~~s~-~--~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          265 VGQAKIKD--GK-VYFTLFEEGS-VNLY-IWD-GEI-KPIAKGRHWIMGFDVDE-I--VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEEET--TE-EEEEEEETTE-EEEE-EES-SSE-EEEECSSSEEEEEEESS-S--EEEEEECSSSCCEEEEES
T ss_pred             cCCccEEc--Cc-EEEEEecCCc-EEEE-EcC-Cce-EEEecCCCeEEeeeeeC-c--EEEEEcCCCChHHheEeC
Confidence            776 8897  56 8888888887 9999 873 443 44555577899999999 3  77777777665 788776

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=1.2e-12  Score=107.67  Aligned_cols=273  Identities=10%  Similarity=-0.054  Sum_probs=178.9

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      ..+.++++.++   +.+.++..    .++.|.+|+.+   ..+..  .........+.++++.+++     .++++.. +
T Consensus        20 ~~p~~i~~d~~---g~l~v~~~----~~~~v~~~~~~---~~~~~--~~~~~~~~~~~~i~~~~~g-----~l~v~~~~~   82 (300)
T 2qc5_A           20 SGPYGITSSED---GKVWFTQH----KANKISSLDQS---GRIKE--FEVPTPDAKVMCLIVSSLG-----DIWFTENGA   82 (300)
T ss_dssp             CCEEEEEECTT---SCEEEEET----TTTEEEEECTT---SCEEE--EECSSTTCCEEEEEECTTS-----CEEEEETTT
T ss_pred             CCcceeeECCC---CCEEEEcC----CCCeEEEECCC---CceEE--EECCCCCCcceeEEECCCC-----CEEEEecCC
Confidence            57889999999   88777665    57899995544   33332  1112234678999999998     7777765 3


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eeeccCCceeEEEe
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET-QLVAHDREVYDISW  174 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~  174 (339)
                       .|..++.. ++. ....+....     ..+.++++.+ +++++++...++.|..+|.. ++... .+......+..+++
T Consensus        83 ~~v~~~d~~-g~~-~~~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~  153 (300)
T 2qc5_A           83 NKIGKLSKK-GGF-TEYPLPQPD-----SGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL  153 (300)
T ss_dssp             TEEEEECTT-SCE-EEEECSSTT-----CCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred             CeEEEECCC-CCe-EEecCCCCC-----CCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence             89999887 442 111222122     5688999997 88888877778899999987 55332 22223456889999


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEe
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLS  252 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~  252 (339)
                      . +++++++...++.|..+|. +++...  ...+.....+..+++++ ++++.++....+. |.+||..  +.... .+.
T Consensus       154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~-i~~~~~~--g~~~~~~~~  226 (300)
T 2qc5_A          154 GSDNALWFTENQNNSIGRITN-TGKLEE--YPLPTNAAAPVGITSGN-DGALWFVEIMGNK-IGRITTT--GEISEYDIP  226 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEE--EECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEECTT--CCEEEEECS
T ss_pred             CCCCCEEEEecCCCeEEEECC-CCcEEE--eeCCCCCCCcceEEECC-CCCEEEEccCCCE-EEEEcCC--CcEEEEECC
Confidence            8 6776666666788999998 444222  22222345788999997 7776665555555 9999983  33222 222


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN  332 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~  332 (339)
                      .+...+.++++++++ .+.++...++.|..|+.. ..           ............+.+++..++|..+++. .+ 
T Consensus       227 ~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~-----------~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~~-  291 (300)
T 2qc5_A          227 TPNARPHAITAGKNS-EIWFTEWGANQIGRITND-NT-----------IQEYQLQTENAEPHGITFGKDGSVWFAL-KC-  291 (300)
T ss_dssp             STTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SC-----------EEEEECCSTTCCCCCEEECTTSCEEEEC-SS-
T ss_pred             CCCCCceEEEECCCC-CEEEeccCCCeEEEECCC-Cc-----------EEEEECCccCCccceeEeCCCCCEEEEc-cC-
Confidence            345678899999998 566666667899999873 33           1111122234568899999999744444 34 


Q ss_pred             eEEEEe
Q 040307          333 KLQLLK  338 (339)
Q Consensus       333 ~v~~w~  338 (339)
                      .|..++
T Consensus       292 ~i~~~~  297 (300)
T 2qc5_A          292 KIGKLN  297 (300)
T ss_dssp             EEEEEE
T ss_pred             ceEEeC
Confidence            655543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=5.7e-14  Score=130.28  Aligned_cols=277  Identities=11%  Similarity=0.031  Sum_probs=168.3

Q ss_pred             eecCCcccEEEEeeeccccCCeEEEEecCCC---CCcccce--e-eEeecCCCCceEEEEcCCCCCCCCCeEEEeC----
Q 040307           26 SVRHDRKSRLAVGSFLEDYSNKIELVNFNPE---TSDFSAD--N-RLIFDHPYTPTNIAFFPSEETLNPDIVATSG----   95 (339)
Q Consensus        26 sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~---~~~~~~~--~-~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----   95 (339)
                      +|+   |++++......+ ...-.||..+..   ++.....  . .+..+|...+..++||||+     +.||.+.    
T Consensus       115 ~pd---G~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG-----~~la~~~~~~G  185 (741)
T 1yr2_A          115 QRR---GASVFYSWNSGL-MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDG-----RLLAYSVQDGG  185 (741)
T ss_dssp             EEE---TTEEEEEEECSS-CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTS-----SEEEEEEEETT
T ss_pred             EEE---CCEEEEEEEcCC-CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCC-----CEEEEEEcCCC
Confidence            488   998888774111 113566666543   3332210  0 0112333468899999999     7777653    


Q ss_pred             -C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe--------------EEEEECCCCee
Q 040307           96 -D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT--------------CVIWDIDREIL  158 (339)
Q Consensus        96 -~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--------------v~i~d~~~~~~  158 (339)
                       +  .|++||+.+++.  +.. ..+.     ..+..++|+| + +.|+.++.++.              |++|++.++..
T Consensus       186 ~e~~~i~v~dl~tg~~--~~~-~~~~-----~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~  255 (741)
T 1yr2_A          186 SDWRTVKFVGVADGKP--LAD-ELKW-----VKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS  255 (741)
T ss_dssp             CSEEEEEEEETTTCCE--EEE-EEEE-----EESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGG
T ss_pred             CceEEEEEEECCCCCC--CCc-cCCC-----ceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch
Confidence             2  699999999873  221 1111     2235789998 8 88888876654              89999977652


Q ss_pred             --eeeee--ccCCceeEEEec-CCcEEEEEeCCC-----cEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          159 --ETQLV--AHDREVYDISWG-GFNVFASVSGDC-----SVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       159 --~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                        ...+.  .+...+..+.|+ ++++|+..+.++     .|++||+.++..  ...+...   ........ +| +++.|
T Consensus       256 ~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~-~~-dg~~l  330 (741)
T 1yr2_A          256 ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQWDFV-DG-VGDQL  330 (741)
T ss_dssp             GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSCEEEE-EE-ETTEE
T ss_pred             hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCceEEEE-ec-cCCEE
Confidence              22222  233357899999 788888776543     899999987621  2333322   22334443 46 67777


Q ss_pred             EEEeeCC---CeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          227 ATVGMDS---NKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       227 ~~~~~d~---~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                      +..+.++   ..|.+||+.... .....+..+...+..++|+ ++ .++++...|+..+||.+....          . .
T Consensus       331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g----------~-~  397 (741)
T 1yr2_A          331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDG----------K-P  397 (741)
T ss_dssp             EEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTS----------C-E
T ss_pred             EEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC----------C-c
Confidence            7666532   248999987631 2233334444556678887 44 688889999998888776432          0 1


Q ss_pred             ceee-ecccceeEEEEecCCCCceEEE-e---cCCeEEEEeC
Q 040307          303 PELC-YQSMAEINVVRWSPLELDWIAI-A---FVNKLQLLKV  339 (339)
Q Consensus       303 ~~~~-~~~~~~i~~~~~~p~~~~l~~~-~---~d~~v~~w~v  339 (339)
                      ...+ ......+..++++|+++.++.. +   ..++|.+|++
T Consensus       398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            1222 2246678999999998766632 2   3467777764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=2.5e-13  Score=113.46  Aligned_cols=241  Identities=10%  Similarity=0.024  Sum_probs=158.5

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-CC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-GD   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~~   96 (339)
                      ..+..+.+..    ++++++..    .++.|.+||  ..+.+...  .  ......+..+++++++     +++++. .+
T Consensus        44 ~~~~~i~~~~----~~lyv~~~----~~~~v~viD--~~t~~~~~--~--i~~~~~p~~i~~~~~g-----~lyv~~~~~  104 (328)
T 3dsm_A           44 DVAQSMVIRD----GIGWIVVN----NSHVIFAID--INTFKEVG--R--ITGFTSPRYIHFLSDE-----KAYVTQIWD  104 (328)
T ss_dssp             SCEEEEEEET----TEEEEEEG----GGTEEEEEE--TTTCCEEE--E--EECCSSEEEEEEEETT-----EEEEEEBSC
T ss_pred             ccceEEEEEC----CEEEEEEc----CCCEEEEEE--CcccEEEE--E--cCCCCCCcEEEEeCCC-----eEEEEECCC
Confidence            3456677643    34444444    579999955  44444443  2  2345678999999998     788777 34


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                       .|.+||..+.+  ....+......+.......+++.  ++.++++.. .++.|.++|+.+++.+..+.. ......+.+
T Consensus       105 ~~v~~iD~~t~~--~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~  179 (328)
T 3dsm_A          105 YRIFIINPKTYE--ITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVM  179 (328)
T ss_dssp             SEEEEEETTTTE--EEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEE
T ss_pred             CeEEEEECCCCe--EEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEE
Confidence             99999998886  44444432100001134566662  555555544 489999999999988777754 334577888


Q ss_pred             c-CCcEEEEEeCC----------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          175 G-GFNVFASVSGD----------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       175 ~-~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      + ++++++++..+          +.|.++|..+.+....+...  .......++++| +++.|+++..  . |.+||...
T Consensus       180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~-d~~~lyv~~~--~-v~~~d~~t  253 (328)
T 3dsm_A          180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNG-TRDTLYWINN--D-IWRMPVEA  253 (328)
T ss_dssp             CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECT-TSCEEEEESS--S-EEEEETTC
T ss_pred             cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEec-CCCEEEEEcc--E-EEEEECCC
Confidence            8 57766666554          78999999887744333322  123678999998 7777777654  5 99999976


Q ss_pred             CCCceEE-EecCCCCeeEEEeccCCCCeEEEE----eCCCcEEEEEecCCC
Q 040307          244 PTNPVVV-LSKHEGSVNGISWAPLYGRRLCSV----ADDSRALIWEVVGPG  289 (339)
Q Consensus       244 ~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~v~iwd~~~~~  289 (339)
                      ....... +.........++++|++..++++.    ..++.|.+||.. ++
T Consensus       254 ~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          254 DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            3321111 121245788999999654577776    678899999988 55

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=7e-13  Score=107.71  Aligned_cols=227  Identities=11%  Similarity=0.044  Sum_probs=158.0

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeE
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELK  111 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~  111 (339)
                      +++|++++    .++.|.+|+  .++++...  .+.......+.++.++|++     ++|++..+.|+.||. +++  .+
T Consensus         5 ~~~lv~~~----~~~~v~~~d--~~tG~~~w--~~~~~~~~~~~~~~~~pdG-----~ilvs~~~~V~~~d~-~G~--~~   68 (276)
T 3no2_A            5 QHLLVGGS----GWNKIAIIN--KDTKEIVW--EYPLEKGWECNSVAATKAG-----EILFSYSKGAKMITR-DGR--EL   68 (276)
T ss_dssp             CEEEEECT----TCSEEEEEE--TTTTEEEE--EEECCTTCCCCEEEECTTS-----CEEEECBSEEEEECT-TSC--EE
T ss_pred             CcEEEeeC----CCCEEEEEE--CCCCeEEE--EeCCCccCCCcCeEECCCC-----CEEEeCCCCEEEECC-CCC--EE
Confidence            57888888    799999954  54555554  2322222468999999999     898855459999998 665  55


Q ss_pred             EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeeec------cCCceeEEEec-CCcEEEEE
Q 040307          112 SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQLVA------HDREVYDISWG-GFNVFASV  183 (339)
Q Consensus       112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~-~~~~l~~~  183 (339)
                      ..+..+.    ...+.++.+.| +++.+++.+. ++.|..+|. +++.+..+..      +......++.. +++++++.
T Consensus        69 W~~~~~~----~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           69 WNIAAPA----GCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             EEEECCT----TCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             EEEcCCC----CccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence            5665432    04678889998 9999999887 788888886 6776665532      11234455666 79999999


Q ss_pred             eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC------CC
Q 040307          184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE------GS  257 (339)
Q Consensus       184 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~------~~  257 (339)
                      ..++.|..||.. ++..-. +..   ...+.++...+ ++++++++..++. |..+|..+ ++.+.++..+.      ..
T Consensus       143 ~~~~~v~~~d~~-G~~~w~-~~~---~~~~~~~~~~~-~g~~~v~~~~~~~-v~~~d~~t-G~~~w~~~~~~~~~~~l~~  214 (276)
T 3no2_A          143 FATSEVREIAPN-GQLLNS-VKL---SGTPFSSAFLD-NGDCLVACGDAHC-FVQLNLES-NRIVRRVNANDIEGVQLFF  214 (276)
T ss_dssp             TTTTEEEEECTT-SCEEEE-EEC---SSCCCEEEECT-TSCEEEECBTTSE-EEEECTTT-CCEEEEEEGGGSBSCCCSE
T ss_pred             cCCCEEEEECCC-CCEEEE-EEC---CCCccceeEcC-CCCEEEEeCCCCe-EEEEeCcC-CcEEEEecCCCCCCccccc
Confidence            999999999988 653333 332   13455677776 8888888777776 99999886 66777776432      23


Q ss_pred             eeEEEeccCCCCeEEEEeCC--------CcEEEEEecCCC
Q 040307          258 VNGISWAPLYGRRLCSVADD--------SRALIWEVVGPG  289 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~~d--------g~v~iwd~~~~~  289 (339)
                      +..++..++| .++++....        +..+++++....
T Consensus       215 ~~~~~~~~~G-~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          215 VAQLFPLQNG-GLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             EEEEEECTTS-CEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             cccceEcCCC-CEEEEeccCccccccccCCceEEEECCCC
Confidence            7788899998 477666311        245677775544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=2.4e-12  Score=105.77  Aligned_cols=234  Identities=10%  Similarity=-0.020  Sum_probs=159.0

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      +...+.++++.+++     .++++.. + .|.+|+.. ++... ..+....     ..+.++++.+ ++.++++...++.
T Consensus        13 ~~~~~~~i~~d~~g-----~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~   79 (299)
T 2z2n_A           13 QDTGPYGITVSDKG-----KVWITQHKANMISCINLD-GKITE-YPLPTPD-----AKVMCLTISS-DGEVWFTENAANK   79 (299)
T ss_dssp             SSCCEEEEEECTTS-----CEEEEETTTTEEEEECTT-CCEEE-EECSSTT-----CCEEEEEECT-TSCEEEEETTTTE
T ss_pred             cCCCccceEECCCC-----CEEEEecCCCcEEEEcCC-CCeEE-ecCCccc-----CceeeEEECC-CCCEEEeCCCCCe
Confidence            34678999999999     7777765 4 89999988 54211 1112222     5788999997 8888887777889


Q ss_pred             EEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          148 CVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       148 v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |..||.. ++ ...+.  .....+..+++. ++.++++...++.|..||. +++....  ..+.....+..+++.| ++.
T Consensus        80 i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~--~~~~~~~~~~~i~~~~-~g~  153 (299)
T 2z2n_A           80 IGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY--ELPNKGSYPSFITLGS-DNA  153 (299)
T ss_dssp             EEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE--ECSSTTCCEEEEEECT-TSC
T ss_pred             EEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe--cCCCCCCCCceEEEcC-CCC
Confidence            9999986 33 22222  244578899998 6777777777889999998 4442222  2222345789999997 777


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP  303 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  303 (339)
                      ++++...++. |..||. . ++.... +......+.++++++++ .+.++...++.|.+||. ...           ...
T Consensus       154 l~v~~~~~~~-i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~-----------~~~  217 (299)
T 2z2n_A          154 LWFTENQNNA-IGRITE-S-GDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGE-----------ITE  217 (299)
T ss_dssp             EEEEETTTTE-EEEECT-T-CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC-----------EEE
T ss_pred             EEEEeCCCCE-EEEEcC-C-CcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCc-----------EEE
Confidence            7666555566 999998 3 332221 23334568899999998 57766667789999998 443           111


Q ss_pred             eeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          304 ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       304 ~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .........+.+++++++|..+++...++.|..|+
T Consensus       218 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          218 FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             EECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            11223446789999999997555555778888876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=1.9e-12  Score=107.30  Aligned_cols=236  Identities=9%  Similarity=0.020  Sum_probs=151.7

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEE-------eC-C-cEEEEeecCCcceeEEEe--ecCCCccCCCCEEEEEEcCCC-CCE
Q 040307           71 PYTPTNIAFFPSEETLNPDIVAT-------SG-D-SLRLWEIHDDRTELKSLL--NSNKTSEFSSAITSFDWAGFD-TRR  138 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~-------~~-~-~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~  138 (339)
                      -..+.+++|++++     .++++       +. + .|.+|+..+++......-  .++.     ..+.++++++ + +++
T Consensus        17 ~~~~~~~~~~~~g-----~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-----~~~~~i~~~~-~~g~l   85 (314)
T 1pjx_A           17 IPGAEGPVFDKNG-----DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-----GIPAGCQCDR-DANQL   85 (314)
T ss_dssp             CTTCEEEEECTTS-----CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-----CCEEEEEECS-SSSEE
T ss_pred             CCCccCceECCCC-----CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC-----CCCceEEEec-CCCcE
Confidence            3457899999998     78777       33 4 899999877763222110  0122     5688999997 6 655


Q ss_pred             EEEEeCCCeEEEEECCCCeeeee-eec----cCCceeEEEec-CCcEEEEEeCC---------------CcEEEEECCCC
Q 040307          139 VATCSVDTTCVIWDIDREILETQ-LVA----HDREVYDISWG-GFNVFASVSGD---------------CSVRVFDLRDK  197 (339)
Q Consensus       139 l~~~~~d~~v~i~d~~~~~~~~~-~~~----~~~~v~~~~~~-~~~~l~~~~~d---------------~~i~i~d~~~~  197 (339)
                      +++. ..+.|.+||.+ ++.... ...    ....+.+++++ +++++++...+               +.|..||.. +
T Consensus        86 ~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (314)
T 1pjx_A           86 FVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             EEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred             EEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence            5544 44589999988 654332 211    12357899998 67777766554               467777765 3


Q ss_pred             cceeeEEeCCCCCCCeEEEEEe----cCCCCeEEEEe-eCCCeEEEEecCCCCC-----ceEEEecCC-CCeeEEEeccC
Q 040307          198 ERSTIIYENPVQDCPLLRLEWN----KADPRFMATVG-MDSNKVVVLDIRFPTN-----PVVVLSKHE-GSVNGISWAPL  266 (339)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~-~d~~~i~i~d~~~~~~-----~~~~~~~~~-~~v~~~~~~p~  266 (339)
                      +. ......   ......++|+    | +++.|+++. .++. |.+||....+.     ....+..+. ..+..++++++
T Consensus       163 ~~-~~~~~~---~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~  236 (314)
T 1pjx_A          163 QM-IQVDTA---FQFPNGIAVRHMNDG-RPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             CE-EEEEEE---ESSEEEEEEEECTTS-CEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             CE-EEeccC---CCCcceEEEecccCC-CCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCC
Confidence            32 222221   2356789999    8 776655554 4565 99999762122     122233333 56789999999


Q ss_pred             CCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307          267 YGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV  339 (339)
Q Consensus       267 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v  339 (339)
                      | .++++...++.|.+||..+..            .......+...+.+++++|++..|+ +...++.|..|++
T Consensus       237 G-~l~v~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          237 N-NLLVANWGSSHIEVFGPDGGQ------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             C-CEEEEEETTTEEEEECTTCBS------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             C-CEEEEEcCCCEEEEEcCCCCc------------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            9 577777788899999987544            1122223446789999999998555 4456678888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=9.2e-13  Score=113.19  Aligned_cols=234  Identities=12%  Similarity=0.024  Sum_probs=155.7

Q ss_pred             CceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC--eE
Q 040307           73 TPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT--TC  148 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~v  148 (339)
                      .+..|+|++++     +++++...  .|++|+.+++.  ........      .... ++|+| +++.|+++..++  .|
T Consensus       132 ~P~~la~d~~g-----~lyv~d~~~~~I~~id~~~g~--~~~~~~~~------~~~~-ia~~~-~g~~l~~~d~~~~~~I  196 (409)
T 3hrp_A          132 YMWGIAAVGNN-----TVLAYQRDDPRVRLISVDDNK--VTTVHPGF------KGGK-PAVTK-DKQRVYSIGWEGTHTV  196 (409)
T ss_dssp             CEEEEEECSTT-----EEEEEETTTTEEEEEETTTTE--EEEEEETC------CBCB-CEECT-TSSEEEEEBSSTTCEE
T ss_pred             CceEEEEeCCC-----CEEEEecCCCcEEEEECCCCE--EEEeeccC------CCCc-eeEec-CCCcEEEEecCCCceE
Confidence            57899999999     78877763  99999998775  33333322      2233 89998 888888888766  79


Q ss_pred             EEEECCCCeeeeee----eccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEe-CCCCCCC--eEEEEEec
Q 040307          149 VIWDIDREILETQL----VAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYE-NPVQDCP--LLRLEWNK  220 (339)
Q Consensus       149 ~i~d~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~--v~~~~~~p  220 (339)
                      .+++...+.....+    ......+.++++++ +..|+.+..++.|+.||..+......... .......  ...++|+|
T Consensus       197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             EEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence            99998665433333    21445678899994 56666677788999999987753221000 1111111  13999998


Q ss_pred             CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------------CCeeEEEeccCCCCeEEEEe-CCCcEEEEE
Q 040307          221 ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE---------------GSVNGISWAPLYGRRLCSVA-DDSRALIWE  284 (339)
Q Consensus       221 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------------~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd  284 (339)
                      .++.++++-..++. |+.|+...  . +..+.++.               .....++++|++ .++++-. .+++|+.|+
T Consensus       277 ~~g~lyv~d~~~~~-I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          277 VDSNFYMSDQNLSS-VYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             TTTEEEEEETTTTE-EEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEE
T ss_pred             CCCEEEEEeCCCCE-EEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEE
Confidence            44555555445555 99998764  2 34444432               347899999999 5777777 789999999


Q ss_pred             ecCCCCCCCCCCCCCcccceeeecc---------------cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          285 VVGPGYRSGNGGPSGDVEPELCYQS---------------MAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +..+.             .....++               -.....++++|++..+++-..++.|+.+.+
T Consensus       352 ~~~G~-------------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          352 ILDGY-------------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTTE-------------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCE-------------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            75544             1111111               245889999999876667778888887753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=2.6e-12  Score=106.45  Aligned_cols=248  Identities=8%  Similarity=0.038  Sum_probs=159.7

Q ss_pred             CCeeEEEeeecCCcccEEEE-------eeeccccCCeEEEEecCCCCCcccceee-EeecCCCCceEEEEcCC-CCCCCC
Q 040307           18 WPISTVAWSVRHDRKSRLAV-------GSFLEDYSNKIELVNFNPETSDFSADNR-LIFDHPYTPTNIAFFPS-EETLNP   88 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~-------g~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~-~~~~~~   88 (339)
                      ..+.+++|+++   +.++++       +.    .++.|.+|+.  .++++..... -..++...+.+++++++ +     
T Consensus        18 ~~~~~~~~~~~---g~l~~~~~~~~~~~~----~~~~i~~~d~--~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-----   83 (314)
T 1pjx_A           18 PGAEGPVFDKN---GDFYIVAPEVEVNGK----PAGEILRIDL--KTGKKTVICKPEVNGYGGIPAGCQCDRDAN-----   83 (314)
T ss_dssp             TTCEEEEECTT---SCEEEEETTCEETTE----ECCEEEEECT--TTCCEEEEECCEETTEECCEEEEEECSSSS-----
T ss_pred             CCccCceECCC---CCEEEEEeccccCCC----CCCEEEEEeC--CCCcEEEEEecccCCCCCCCceEEEecCCC-----
Confidence            46789999988   887777       55    4788988553  3444332000 00114467899999999 7     


Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------------CeEEEE
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------------TTCVIW  151 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------------~~v~i~  151 (339)
                      +++++..+ .|.+|+.+ ++  .... ..... ......+.+++++| +++++++...+               +.|..+
T Consensus        84 ~l~v~~~~~~l~~~d~~-g~--~~~~~~~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (314)
T 1pjx_A           84 QLFVADMRLGLLVVQTD-GT--FEEIAKKDSE-GRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             EEEEEETTTEEEEEETT-SC--EEECCSBCTT-SCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             cEEEEECCCCEEEEeCC-CC--EEEEEeccCC-CccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEE
Confidence            77777665 89999987 54  2222 11111 01114578999998 88877776654               577778


Q ss_pred             ECCCCeeeeeeeccCCceeEEEec----CC-cEE-EEEeCCCcEEEEECC-CCcce--eeEEeCCCCC-CCeEEEEEecC
Q 040307          152 DIDREILETQLVAHDREVYDISWG----GF-NVF-ASVSGDCSVRVFDLR-DKERS--TIIYENPVQD-CPLLRLEWNKA  221 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~~----~~-~~l-~~~~~d~~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~~~~~p~  221 (339)
                      |.. ++... +..+......++++    +. +.+ ++...++.|.+||+. .++..  ......+.+. ..+..+++++ 
T Consensus       159 ~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-  235 (314)
T 1pjx_A          159 TTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-  235 (314)
T ss_dssp             CTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-
T ss_pred             CCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-
Confidence            765 54333 22333456788887    54 344 444567899999986 33211  1222222222 4578899997 


Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +++++++...++. |.+||..+ ++.+..+..+...+.+++|+|++..++++...++.|..|++....
T Consensus       236 ~G~l~v~~~~~~~-i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          236 DNNLLVANWGSSH-IEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             TCCEEEEEETTTE-EEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             CCCEEEEEcCCCE-EEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            7887777666777 99999875 445566666667899999999984244555567889999987644

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.59  E-value=9.5e-14  Score=116.90  Aligned_cols=173  Identities=10%  Similarity=0.056  Sum_probs=131.9

Q ss_pred             CceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc---------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           73 TPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR---------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .++.|++++..     .++++|+. .+.+|+++...         ....... .+.     . |+.++|   ++++|+++
T Consensus        39 ~~nlLais~~~-----gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp-----~-V~~l~f---d~~~L~v~  103 (388)
T 1xip_A           39 SLQNLDISNSK-----SLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIP-----D-VIFVCF---HGDQVLVS  103 (388)
T ss_dssp             CCBCEEEETTT-----TEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECT-----T-EEEEEE---ETTEEEEE
T ss_pred             cccEEEEcCCC-----CEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCC-----C-eeEEEE---CCCEEEEE
Confidence            68999999999     78888875 88889976433         2221222 233     5 999999   67888888


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD  222 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  222 (339)
                       .++.|++||+++.........|...+.++.+.+.+ ++++..||.|.+||+.......       ....|.+++|+| +
T Consensus       104 -~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-k  173 (388)
T 1xip_A          104 -TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-S  173 (388)
T ss_dssp             -ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-S
T ss_pred             -cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-C
Confidence             88999999998776666666788889998888434 8888999999999999876432       124799999998 6


Q ss_pred             CCeEEEEeeCCCeEEEEecCCCCCc--eEEE------e---cCCCCeeEEEeccCCCCeEEEEe
Q 040307          223 PRFMATVGMDSNKVVVLDIRFPTNP--VVVL------S---KHEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       223 ~~~l~~~~~d~~~i~i~d~~~~~~~--~~~~------~---~~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                      |  ++.|..|+. +++|+... ...  ..++      .   +|...|.+|.|.+++ .++++-.
T Consensus       174 G--~~vg~~dg~-i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y~  232 (388)
T 1xip_A          174 Q--LAVLLKDRS-FQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVFG  232 (388)
T ss_dssp             E--EEEEETTSC-EEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEEE
T ss_pred             c--eEEEEcCCc-EEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEEEc
Confidence            6  778899998 99998765 222  3344      2   367899999999998 5777643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.58  E-value=1.1e-12  Score=121.68  Aligned_cols=248  Identities=16%  Similarity=0.098  Sum_probs=156.8

Q ss_pred             CeeEEEeeecCCcccEEEEeeecccc-CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDY-SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      .+..++||||   |++||++...++. ...|++|+++  +++...  .  ..+...+..++|+|| +    .++.+..+ 
T Consensus       164 ~~~~~~~SPD---G~~la~~~~~~G~e~~~i~v~dl~--tg~~~~--~--~~~~~~~~~~~wspD-~----~l~~~~~~~  229 (741)
T 1yr2_A          164 ALDAWAASDD---GRLLAYSVQDGGSDWRTVKFVGVA--DGKPLA--D--ELKWVKFSGLAWLGN-D----ALLYSRFAE  229 (741)
T ss_dssp             EEEEEEECTT---SSEEEEEEEETTCSEEEEEEEETT--TCCEEE--E--EEEEEESCCCEESTT-S----EEEEEECCC
T ss_pred             EEEeEEECCC---CCEEEEEEcCCCCceEEEEEEECC--CCCCCC--c--cCCCceeccEEEECC-C----EEEEEEecC
Confidence            6788999999   9999998731111 1457775554  444433  1  111122467899999 5    67666543 


Q ss_pred             --------------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCC-
Q 040307           97 --------------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDRE-  156 (339)
Q Consensus        97 --------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~-  156 (339)
                                    .|++|++.++.......+....   +...+..+.|+| ++++|+..+.++     .|++||+.++ 
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~---~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~  305 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE---LPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGK  305 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTE
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEeccCC---CCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCC
Confidence                          3889998776532222333221   013478999998 999888877544     8999999876 


Q ss_pred             -eeeeeeeccCCceeEEEecCCcEEEEEeCC----CcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          157 -ILETQLVAHDREVYDISWGGFNVFASVSGD----CSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       157 -~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                       +....+..+...+....+.+++.|+..+.+    +.|.+||+.+.. ....+...  +...+..++|.  ++.++++..
T Consensus       306 ~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~l~~~~~~--~~~lv~~~~  381 (741)
T 1yr2_A          306 IGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE--SKDNLESVGIA--GNRLFASYI  381 (741)
T ss_dssp             ECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC--CSSEEEEEEEE--BTEEEEEEE
T ss_pred             CcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC--CCCeEEEEEEE--CCEEEEEEE
Confidence             314555555555555544467777766654    459999988752 23333322  34456677776  567778888


Q ss_pred             eCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCC
Q 040307          231 MDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPG  289 (339)
Q Consensus       231 ~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~  289 (339)
                      .++. .+||.+...+.....+.. +...+..+.++|+++.++++.+   ..+.|++||+.+++
T Consensus       382 ~dg~-~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          382 HDAK-SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTE-EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ECCE-EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8876 666655432444555654 3567889999999854444443   34789999987654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.57  E-value=9e-12  Score=102.51  Aligned_cols=233  Identities=12%  Similarity=0.093  Sum_probs=147.3

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcE
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSL   98 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i   98 (339)
                      -.-...|+|+  .+.++++..    .++.|..|+.+  +.....     ......+.++++++++     +++++..+.|
T Consensus        14 ~~Egp~w~~~--~~~l~~~d~----~~~~i~~~d~~--~~~~~~-----~~~~~~~~~i~~~~dG-----~l~v~~~~~l   75 (297)
T 3g4e_A           14 CGESPVWEEV--SNSLLFVDI----PAKKVCRWDSF--TKQVQR-----VTMDAPVSSVALRQSG-----GYVATIGTKF   75 (297)
T ss_dssp             BEEEEEEETT--TTEEEEEET----TTTEEEEEETT--TCCEEE-----EECSSCEEEEEEBTTS-----SEEEEETTEE
T ss_pred             cccCCeEECC--CCEEEEEEC----CCCEEEEEECC--CCcEEE-----EeCCCceEEEEECCCC-----CEEEEECCeE
Confidence            3457889996  144555555    57889886654  333332     3456789999999999     8777765599


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCeeeeeeeccCCce
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------TTCVIWDIDREILETQLVAHDREV  169 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~~v  169 (339)
                      .+||.++++...+.......   ....++.++++| +++++++....         ..-.+|.+........+.......
T Consensus        76 ~~~d~~~g~~~~~~~~~~~~---~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p  151 (297)
T 3g4e_A           76 CALNWKEQSAVVLATVDNDK---KNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS  151 (297)
T ss_dssp             EEEETTTTEEEEEEECCTTC---SSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE
T ss_pred             EEEECCCCcEEEEEecCCCC---CCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc
Confidence            99999887633332221111   114578999998 88876654321         223444443222222233344456


Q ss_pred             eEEEec-CCcEE-EEEeCCCcEEEEECC--CCcce--eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          170 YDISWG-GFNVF-ASVSGDCSVRVFDLR--DKERS--TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       170 ~~~~~~-~~~~l-~~~~~d~~i~i~d~~--~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      +.++|+ +++.| ++.+.++.|.+||+.  ++...  ..+.........+..+++++ +|++.++....+. |..||..+
T Consensus       152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~-v~~~d~~t  229 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGR-VIRLDPVT  229 (297)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTE-EEEECTTT
T ss_pred             cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCE-EEEEcCCC
Confidence            889999 66655 555667889999974  44321  12222212234678899997 7876666555566 99999876


Q ss_pred             CCCceEEEecCCCCeeEEEec-cCCCCeEEEEeC
Q 040307          244 PTNPVVVLSKHEGSVNGISWA-PLYGRRLCSVAD  276 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~  276 (339)
                       ++.+..+..+...+++++|. |++..++++...
T Consensus       230 -G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          230 -GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             -CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             -ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence             56777787777789999998 887544444443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=5.6e-11  Score=100.69  Aligned_cols=274  Identities=7%  Similarity=-0.046  Sum_probs=162.9

Q ss_pred             eeecCCcccEEEEeeeccccCC--eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-------
Q 040307           25 WSVRHDRKSRLAVGSFLEDYSN--KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-------   95 (339)
Q Consensus        25 ~sp~~~~~~~la~g~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-------   95 (339)
                      ..|+   +.++.+... .+.+.  .|.+||..  +.+...  .+  ...... .++++|++     +.+..+.       
T Consensus        28 ~~~~---~~~~yv~~~-~~~~~~~~v~v~D~~--t~~~~~--~i--~~g~~p-~i~~spDg-----~~lyv~n~~~~~~~   91 (373)
T 2mad_H           28 PGAD---GRRSYINLP-AHHSAIIQQWVLDAG--SGSILG--HV--NGGFLP-NPVAAHSG-----SEFALASTSFSRIA   91 (373)
T ss_pred             CCCC---CCEEEEeCC-cccCCccEEEEEECC--CCeEEE--Ee--cCCCCC-CeEECCCC-----CEEEEEeccccccc
Confidence            3456   666655541 00111  77785544  444433  23  222233 99999999     5555542       


Q ss_pred             -----CcEEEEeecCCcceeEEEeecC--CCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeee-eecc
Q 040307           96 -----DSLRLWEIHDDRTELKSLLNSN--KTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQ-LVAH  165 (339)
Q Consensus        96 -----~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~-~~~~  165 (339)
                           +.|.+||..+.+  ....+...  ...........+.|+| ++++|+++..  ++.|.++| .+++.+.. +.. 
T Consensus        92 rg~~~~~v~viD~~t~~--~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-  166 (373)
T 2mad_H           92 KGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-  166 (373)
T ss_pred             cCCCCCeEEEEECCCCc--EEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-
Confidence                 379999998776  44443321  0000001234789998 9999998874  57899999 99988777 542 


Q ss_pred             CCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEe--CCCCCCC-eEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          166 DREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYE--NPVQDCP-LLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       166 ~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~-v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                      ...   +.+.  ....+++.+.||.+.++|. +++.......  ......+ .....+.+.++.++++ +..+. +.+.|
T Consensus       167 ~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~-v~vid  240 (373)
T 2mad_H          167 PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGK-ILQAD  240 (373)
T ss_pred             Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCce-EEEEe
Confidence            222   3333  3456777888999999999 6654322110  0001122 2335666644444444 45666 99999


Q ss_pred             cCCCCC-ceEEEec----------CCCCeeEEEeccCCCCeEEEEeC----------CCcEEEEEecCCCCCCCCCCCCC
Q 040307          241 IRFPTN-PVVVLSK----------HEGSVNGISWAPLYGRRLCSVAD----------DSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       241 ~~~~~~-~~~~~~~----------~~~~v~~~~~~p~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                      +..... .+..+..          .......+.++|++. .++++..          .+.|.++|+.+.+          
T Consensus       241 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----------  309 (373)
T 2mad_H          241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----------  309 (373)
T ss_pred             ccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCE----------
Confidence            865321 1122211          112244578999985 5555432          3579999998877          


Q ss_pred             cccceeeecccceeEEEEecCCCC-ceEEEe-cCCeEEEEeC
Q 040307          300 DVEPELCYQSMAEINVVRWSPLEL-DWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~-~d~~v~~w~v  339 (339)
                         .............++|+|||+ .++++. .++.|.++++
T Consensus       310 ---vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          310 ---TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             ---EEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence               443334445689999999998 566666 5899999874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=5.1e-12  Score=102.60  Aligned_cols=210  Identities=8%  Similarity=-0.066  Sum_probs=148.9

Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      ++|++++ + .|.+||.++++  .+..+..+..    ..+.++.+.| ++++++  +.++.|..||. +++.+..+..+.
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~--~~w~~~~~~~----~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~   75 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKE--IVWEYPLEKG----WECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPA   75 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTE--EEEEEECCTT----CCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred             cEEEeeCCCCEEEEEECCCCe--EEEEeCCCcc----CCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence            5777776 4 99999998887  5666665420    2577889998 899888  45788999999 888888887643


Q ss_pred             -CceeEEEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307          167 -REVYDISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENP---VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD  240 (339)
Q Consensus       167 -~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d  240 (339)
                       ..+.++.+. +++++++.+. ++.+..+|. +++....+....   .+......+++.+ +++++++...++. |..||
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~-v~~~d  152 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSE-VREIA  152 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTE-EEEEC
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCE-EEEEC
Confidence             467888888 8999998887 777877776 444332222110   1112344567776 8999998888887 99999


Q ss_pred             cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-c------ccee
Q 040307          241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-S------MAEI  313 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~i  313 (339)
                      ..  ++.+.++... ....++...+++ .++++++.++.|..+|..+++             .+..+. .      ...+
T Consensus       153 ~~--G~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~-------------~~w~~~~~~~~~~~l~~~  215 (276)
T 3no2_A          153 PN--GQLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNR-------------IVRRVNANDIEGVQLFFV  215 (276)
T ss_dssp             TT--SCEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCC-------------EEEEEEGGGSBSCCCSEE
T ss_pred             CC--CCEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCc-------------EEEEecCCCCCCcccccc
Confidence            86  5667777654 456778889998 588888888889999988776             332221 1      1237


Q ss_pred             EEEEecCCCCceEEE
Q 040307          314 NVVRWSPLELDWIAI  328 (339)
Q Consensus       314 ~~~~~~p~~~~l~~~  328 (339)
                      ..++..++|..+++.
T Consensus       216 ~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          216 AQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             ccceEcCCCCEEEEe
Confidence            788888888755554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=6.6e-13  Score=111.81  Aligned_cols=177  Identities=14%  Similarity=0.116  Sum_probs=129.3

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-------CcccceeeEeecCCCCceEEEEcCCCCCCCCCeE
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-------SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV   91 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l   91 (339)
                      ++..+++++.   ..++++|+     ...+.+|+.+.-.       ..+..  .....+.. |+.|+|  ++     .+|
T Consensus        39 ~~nlLais~~---~gll~a~~-----~~~l~v~~~~~l~~~~~~~~~~~~~--~~~~~lp~-V~~l~f--d~-----~~L  100 (388)
T 1xip_A           39 SLQNLDISNS---KSLFVAAS-----GSKAVVGELQLLRDHITSDSTPLTF--KWEKEIPD-VIFVCF--HG-----DQV  100 (388)
T ss_dssp             CCBCEEEETT---TTEEEEEE-----TTEEEEEEHHHHHHHHHSSSCCCCC--SEEEECTT-EEEEEE--ET-----TEE
T ss_pred             cccEEEEcCC---CCEEEEeC-----CCEEEEEEhhHhhhhhccccccccc--eEEeeCCC-eeEEEE--CC-----CEE
Confidence            6899999999   88999998     4577778754211       11221  12345777 999999  77     788


Q ss_pred             EEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           92 ATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        92 a~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      +++.+ .|++||+.+..  .......++     .++.++.+.+ .  .+++++.||.|.+||+.++....    +...|+
T Consensus       101 ~v~~~~~l~v~dv~sl~--~~~~~~~~~-----~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs  166 (388)
T 1xip_A          101 LVSTRNALYSLDLEELS--EFRTVTSFE-----KPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVT  166 (388)
T ss_dssp             EEEESSEEEEEESSSTT--CEEEEEECS-----SCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEE
T ss_pred             EEEcCCcEEEEEchhhh--ccCccceee-----cceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCce
Confidence            88765 99999998875  444555555     6788888875 2  28889999999999998776543    445899


Q ss_pred             EEEecCCcEEEEEeCCCcEEEEECCCCcc--eeeEEeC------CCCCCCeEEEEEecCCCCeEEEE
Q 040307          171 DISWGGFNVFASVSGDCSVRVFDLRDKER--STIIYEN------PVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                      |++|++.. ++.|..||.+++|+......  ...+...      ..+...|.++.|.+ ++.++++-
T Consensus       167 ~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y  231 (388)
T 1xip_A          167 SFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF  231 (388)
T ss_dssp             EEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred             EEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence            99999544 78899999999998887663  2222111      12567899999997 77777763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=1.1e-11  Score=104.01  Aligned_cols=282  Identities=10%  Similarity=-0.002  Sum_probs=173.0

Q ss_pred             EEEeeecCCcccEEEEeeec-cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe------
Q 040307           22 TVAWSVRHDRKSRLAVGSFL-EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS------   94 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~------   94 (339)
                      .....|+   +..+.+.... ...++.|.+  ++..+.+...  .+..+..  .. ++++|+++    .++++.      
T Consensus        37 ~~~~~pd---~~~vyV~~~~~~~~~~~V~V--iD~~t~~v~~--~I~vG~~--P~-va~spDG~----~lyVan~~~~r~  102 (386)
T 3sjl_D           37 LEAPAPD---ARRVYVNDPAHFAAVTQQFV--IDGEAGRVIG--MIDGGFL--PN-PVVADDGS----FIAHASTVFSRI  102 (386)
T ss_dssp             CCCCCCC---TTEEEEEECGGGCSSEEEEE--EETTTTEEEE--EEEECSS--CE-EEECTTSS----CEEEEEEEEEET
T ss_pred             eeccCCC---CCEEEEEcCcccCCCCEEEE--EECCCCeEEE--EEECCCC--Cc-EEECCCCC----EEEEEccccccc
Confidence            3455677   8888887730 001578888  5555555554  3322322  34 99999994    344443      


Q ss_pred             -----CCcEEEEeecCCcceeEEEeecCC--CccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecc
Q 040307           95 -----GDSLRLWEIHDDRTELKSLLNSNK--TSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        95 -----~~~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~  165 (339)
                           ++.|.+||..+.+  ....+....  ..........+.++| ++++++.+..  ++.|.++|+.+++.+.++...
T Consensus       103 ~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~  179 (386)
T 3sjl_D          103 ARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP  179 (386)
T ss_dssp             TEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             ccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence                 1289999999987  555543210  000002345789998 9998888864  689999999999988888532


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCC-CcceeeEEeC-CCCCCCe-EEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRD-KERSTIIYEN-PVQDCPL-LRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~-~~~~~~v-~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                       + . ...+. ....+++.+.||.+.+.++.. ++........ .....++ ....|.+.+|++++ .+.++. +++.|+
T Consensus       180 -g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~  254 (386)
T 3sjl_D          180 -D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDL  254 (386)
T ss_dssp             -S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEEC
T ss_pred             -C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEEC
Confidence             2 1 22233 356777888999999999987 4431111001 0011222 22466544665554 455776 999998


Q ss_pred             CCCCC-ceEEEe----------cCCCCeeEEEeccCCCCeEEEEeC----------CCcEEEEEecCCCCCCCCCCCCCc
Q 040307          242 RFPTN-PVVVLS----------KHEGSVNGISWAPLYGRRLCSVAD----------DSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       242 ~~~~~-~~~~~~----------~~~~~v~~~~~~p~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                      ..... .+..+.          ........++++|++. .++....          .+.|.++|+.+.+           
T Consensus       255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~k-----------  322 (386)
T 3sjl_D          255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGE-----------  322 (386)
T ss_dssp             TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCC-----------
T ss_pred             CCCcceeecceeccccccccccccCCCcceeeECCCCC-eEEEEeccccccccCCCCCEEEEEECCCCe-----------
Confidence            75321 111121          0122345678899985 5554432          2468899998887           


Q ss_pred             ccceeeecccceeEEEEecCCCC-ceEEEe-cCCeEEEEeC
Q 040307          301 VEPELCYQSMAEINVVRWSPLEL-DWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~-~d~~v~~w~v  339 (339)
                        .+....-...+.+++++|+++ .|+++. .++.|.+++.
T Consensus       323 --v~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          323 --RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             --EEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             --EEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence              444444445789999999996 566654 5899999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=5e-11  Score=97.87  Aligned_cols=234  Identities=9%  Similarity=-0.053  Sum_probs=156.3

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC  148 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v  148 (339)
                      ...+.++.+.+++     .++++.. + .|.+|+.. ++... ..+....     ..+.++++.+ +++++++...++.|
T Consensus        19 ~~~p~~i~~d~~g-----~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~v   85 (300)
T 2qc5_A           19 DSGPYGITSSEDG-----KVWFTQHKANKISSLDQS-GRIKE-FEVPTPD-----AKVMCLIVSS-LGDIWFTENGANKI   85 (300)
T ss_dssp             TCCEEEEEECTTS-----CEEEEETTTTEEEEECTT-SCEEE-EECSSTT-----CCEEEEEECT-TSCEEEEETTTTEE
T ss_pred             CCCcceeeECCCC-----CEEEEcCCCCeEEEECCC-CceEE-EECCCCC-----CcceeEEECC-CCCEEEEecCCCeE
Confidence            4578899999999     7877765 3 89999987 54221 1222222     5788999997 88877777668899


Q ss_pred             EEEECCCCeeee-eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          149 VIWDIDREILET-QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       149 ~i~d~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                      ..+|.. ++... .+......+.++++. +++++++...++.|..+|.. ++...  ...+.....+..+++.| ++++.
T Consensus        86 ~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~--~~~~~~~~~~~~i~~d~-~g~l~  160 (300)
T 2qc5_A           86 GKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE--YDLPNKGSYPAFITLGS-DNALW  160 (300)
T ss_dssp             EEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECT-TSSEE
T ss_pred             EEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE--ccCCCCCCCceeEEECC-CCCEE
Confidence            999987 54321 222234568899998 67777777668889999987 44222  22222345789999997 77755


Q ss_pred             EEEeeCCCeEEEEecCCCCCceE-EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVV-VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL  305 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  305 (339)
                      ++...++. |..+|. . ++... ....+...+..+++++++ .+.++....+.|.+|+. ...           .....
T Consensus       161 v~~~~~~~-i~~~~~-~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~-----------~~~~~  224 (300)
T 2qc5_A          161 FTENQNNS-IGRITN-T-GKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGE-----------ISEYD  224 (300)
T ss_dssp             EEETTTTE-EEEECT-T-CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC-----------EEEEE
T ss_pred             EEecCCCe-EEEECC-C-CcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCc-----------EEEEE
Confidence            55444555 999988 3 33222 122334568899999998 57666666778999987 333           01111


Q ss_pred             eecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .......+.++++++++..+++...++.|..|+
T Consensus       225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             CCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            223445688999999997555555678887775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=4.5e-11  Score=98.31  Aligned_cols=223  Identities=10%  Similarity=0.071  Sum_probs=142.3

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      .-..+..|+|++.    .++.+.. + .|..|+..+++.   ..+.. .     ..+.+++++| +++++++ . ++.|.
T Consensus        13 ~~~Egp~w~~~~~----~l~~~d~~~~~i~~~d~~~~~~---~~~~~-~-----~~~~~i~~~~-dG~l~v~-~-~~~l~   76 (297)
T 3g4e_A           13 RCGESPVWEEVSN----SLLFVDIPAKKVCRWDSFTKQV---QRVTM-D-----APVSSVALRQ-SGGYVAT-I-GTKFC   76 (297)
T ss_dssp             SBEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCE---EEEEC-S-----SCEEEEEEBT-TSSEEEE-E-TTEEE
T ss_pred             ccccCCeEECCCC----EEEEEECCCCEEEEEECCCCcE---EEEeC-C-----CceEEEEECC-CCCEEEE-E-CCeEE
Confidence            3456889999652    5666655 3 999999987752   22222 2     5789999998 8885554 3 57899


Q ss_pred             EEECCCCeeeeeeec----cCCceeEEEec-CCcEEEEEeCC---------CcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307          150 IWDIDREILETQLVA----HDREVYDISWG-GFNVFASVSGD---------CSVRVFDLRDKERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       150 i~d~~~~~~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  215 (339)
                      +||.++++.......    ....+.+++++ +++++++....         ..-.+|.+........+...   ......
T Consensus        77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~png  153 (297)
T 3g4e_A           77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNG  153 (297)
T ss_dssp             EEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEE
T ss_pred             EEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cccccc
Confidence            999988764332221    12347889999 67766654321         23355555433222222221   235678


Q ss_pred             EEEecCCCCeEEEEe-eCCCeEEEEecC-CCCCc-----eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307          216 LEWNKADPRFMATVG-MDSNKVVVLDIR-FPTNP-----VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP  288 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~-~d~~~i~i~d~~-~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~  288 (339)
                      ++|+| +++.|+.+. .++. |.+||+. ..+..     +..+..+......++++++| ++.++....+.|..||..++
T Consensus       154 i~~sp-dg~~lyv~~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          154 LDWSL-DHKIFYYIDSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EEECT-TSCEEEEEEGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTC
T ss_pred             eEEcC-CCCEEEEecCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCc
Confidence            99998 777665544 4555 9999974 22321     12222334567899999999 57777777888999998876


Q ss_pred             CCCCCCCCCCCcccce-eeecccceeEEEEec-CCCCceEEEe
Q 040307          289 GYRSGNGGPSGDVEPE-LCYQSMAEINVVRWS-PLELDWIAIA  329 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-p~~~~l~~~~  329 (339)
                      +             .+ .+..+...+++++|. |++..|+.++
T Consensus       231 ~-------------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          231 K-------------RLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             C-------------EEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             e-------------EEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            6             33 233344679999998 8887766443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=1.2e-11  Score=104.03  Aligned_cols=275  Identities=7%  Similarity=-0.044  Sum_probs=170.6

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE---eecCCCCceEEEEcCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL---IFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~   85 (339)
                      +.+.++.  ..+..++++|+   ++++++....  .++.++||.++  .+.....+..   ...+-..+..+++.+++  
T Consensus        10 ~~v~~~~--~~p~~va~~~~---g~~~v~~~~~--~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g--   78 (343)
T 2qe8_A           10 EVVAELS--LAPGNITLTPD---GRLFLSLHQF--YQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNG--   78 (343)
T ss_dssp             EEEEEES--SCEEEEEECTT---SCEEEEECGG--GCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSS--
T ss_pred             EEEEEcC--CCcceEEECCC---CCEEEEeCCC--CCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCC--
Confidence            3444444  68999999999   9988886421  12335666666  2332210000   11345678999999998  


Q ss_pred             CCCCeEEEeC-------CcEEEEeecCCcceeEEEeecCCC-ccCCCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECC
Q 040307           86 LNPDIVATSG-------DSLRLWEIHDDRTELKSLLNSNKT-SEFSSAITSFDWAGFDTRRVATCS---VDTTCVIWDID  154 (339)
Q Consensus        86 ~~~~~la~~~-------~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~---~d~~v~i~d~~  154 (339)
                         +++++..       ..|.+||+.+++  ....+..... ......+..++++|.++..+++-.   .++.|.+||+.
T Consensus        79 ---~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A           79 ---IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             ---EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             ---cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence               7777542       389999998876  3444432210 011134678999973444455544   67899999998


Q ss_pred             CCeeeeeeeccCCcee-EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          155 REILETQLVAHDREVY-DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       155 ~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      +++..+.+..|..... ...+. ++..+.+.+.++.++.|.                 ..+..++|+| +++.|+++...
T Consensus       154 ~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~-dg~~ly~~~~~  215 (343)
T 2qe8_A          154 TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDA-ENEWLYLSPMH  215 (343)
T ss_dssp             TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------CCEEEEEECT-TSCEEEEEESS
T ss_pred             CCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-----------------cccceeEecc-CCCEEEEEeCC
Confidence            8887666654422111 12333 566666667777765442                 2357899998 88888888777


Q ss_pred             CCeEEEEecCC--CCC--------ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          233 SNKVVVLDIRF--PTN--------PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       233 ~~~i~i~d~~~--~~~--------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                      +..+..++...  ...        .+ ...++......++++++| .++++...++.|.+||...++           ..
T Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~-----------~~  282 (343)
T 2qe8_A          216 STSMYRIKSADLSNLQLTDAELGSKI-ERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRA-----------YK  282 (343)
T ss_dssp             CSEEEEEEHHHHTCTTCCHHHHHTTC-EEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTE-----------EE
T ss_pred             CCeEEEEEHHHhcCCCCChhhhhcce-EecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCC-----------EE
Confidence            75466665421  010        01 122334466789999998 688888889999999984433           11


Q ss_pred             ceeeecccceeEEEEecCCCCceEEEec
Q 040307          303 PELCYQSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      .+........+.++++.+++..+++.+.
T Consensus       283 ~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          283 LLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             EEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             EEEECCceecCCeeEECCCCcEEEEeCc
Confidence            1111122456899999999876666653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.50  E-value=1.8e-10  Score=96.06  Aligned_cols=229  Identities=9%  Similarity=-0.018  Sum_probs=144.2

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEE
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLR   99 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~   99 (339)
                      .....|+|+  .+.++.+..    .++.|..|+.+  ++....     ......+.++.|++++     +++++..+.|.
T Consensus        51 ~egp~~~~~--~~~l~~~d~----~~~~i~~~d~~--~~~~~~-----~~~~~~v~~i~~~~dg-----~l~v~~~~gl~  112 (326)
T 2ghs_A           51 GEGPTFDPA--SGTAWWFNI----LERELHELHLA--SGRKTV-----HALPFMGSALAKISDS-----KQLIASDDGLF  112 (326)
T ss_dssp             EEEEEEETT--TTEEEEEEG----GGTEEEEEETT--TTEEEE-----EECSSCEEEEEEEETT-----EEEEEETTEEE
T ss_pred             CcCCeEeCC--CCEEEEEEC----CCCEEEEEECC--CCcEEE-----EECCCcceEEEEeCCC-----eEEEEECCCEE
Confidence            457899997  134455555    57888885543  444332     2345679999999999     78877655899


Q ss_pred             EEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC------CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307          100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV------DTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus       100 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      +||.++++...+......   .....+.++.++| +++++++...      .+.|..++  +++.. .+.........++
T Consensus       113 ~~d~~~g~~~~~~~~~~~---~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~  185 (326)
T 2ghs_A          113 LRDTATGVLTLHAELESD---LPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC  185 (326)
T ss_dssp             EEETTTCCEEEEECSSTT---CTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred             EEECCCCcEEEEeeCCCC---CCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence            999887763322211110   0114688999998 8887665542      24566666  45433 3323334567899


Q ss_pred             ec-CCcEEE-EEeCCCcEEEEECC--CC-cc--eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          174 WG-GFNVFA-SVSGDCSVRVFDLR--DK-ER--STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       174 ~~-~~~~l~-~~~~d~~i~i~d~~--~~-~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      |+ +++.++ +.+.++.|.+||+.  ++ ..  ...+.........+..+++++ ++++.++...++. |..||..  ++
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~-v~~~d~~--g~  261 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGA-VDRYDTD--GN  261 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTE-EEEECTT--CC
T ss_pred             EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCE-EEEECCC--CC
Confidence            99 676554 44557899999986  44 21  112222211234567899987 7776665545566 9999983  55


Q ss_pred             ceEEEecCCCCeeEEEec-cCCCCeEEEEeCC
Q 040307          247 PVVVLSKHEGSVNGISWA-PLYGRRLCSVADD  277 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~d  277 (339)
                      .+..+..+...+.+++|+ |++..++++...+
T Consensus       262 ~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          262 HIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            566777767789999998 8874344444444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.48  E-value=3.9e-11  Score=100.65  Aligned_cols=276  Identities=10%  Similarity=0.021  Sum_probs=168.1

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeecC------CCCc
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFDH------PYTP   74 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~------~~~v   74 (339)
                      +.+.+.+........ ++++|+   +++|.++..      .+..++.|.+|  +..+.+...  .+..+.      ....
T Consensus        68 t~~v~~~I~vG~~P~-va~spD---G~~lyVan~~~~r~~~G~~~~~Vsvi--D~~t~~v~~--~I~v~~g~r~~~g~~P  139 (386)
T 3sjl_D           68 AGRVIGMIDGGFLPN-PVVADD---GSFIAHASTVFSRIARGERTDYVEVF--DPVTLLPTA--DIELPDAPRFLVGTYP  139 (386)
T ss_dssp             TTEEEEEEEECSSCE-EEECTT---SSCEEEEEEEEEETTEEEEEEEEEEE--CTTTCCEEE--EEEETTCCCCCBSCCG
T ss_pred             CCeEEEEEECCCCCc-EEECCC---CCEEEEEcccccccccCCCCCEEEEE--ECCCCeEEE--EEECCCccccccCCCC
Confidence            455666666554444 999999   998877652      01136789995  455555444  222221      2357


Q ss_pred             eEEEEcCCCCCCCCCeEEEe-C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           75 TNIAFFPSEETLNPDIVATS-G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        75 ~~l~~~~~~~~~~~~~la~~-~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      ..+.|+||++    .++++. . + .|.++|+.+.+  .+.++...       .+ ...+ |...+.+++.+.||.+.+.
T Consensus       140 ~~~a~spDGk----~lyVan~~~~~~VsVID~~t~~--vv~tI~v~-------g~-~~~~-P~g~~~~~~~~~DG~~~~v  204 (386)
T 3sjl_D          140 WMTSLTPDGK----TLLFYQFSPAPAVGVVDLEGKA--FKRMLDVP-------DC-YHIF-PTAPDTFFMHCRDGSLAKV  204 (386)
T ss_dssp             GGEEECTTSS----EEEEEECSSSCEEEEEETTTTE--EEEEEECC-------SE-EEEE-EEETTEEEEEETTSCEEEE
T ss_pred             ceEEEcCCCC----EEEEEEcCCCCeEEEEECCCCc--EEEEEECC-------Cc-ceee-cCCCceeEEECCCCCEEEE
Confidence            7899999993    344443 2 3 89999999987  56666432       12 2223 4356677788889999999


Q ss_pred             ECCC-Ceeeeeeecc----CCcee-EEEec-CCcEEEEEeCCCcEEEEECCCCcce--eeEE--e-----CCCCCCCeEE
Q 040307          152 DIDR-EILETQLVAH----DREVY-DISWG-GFNVFASVSGDCSVRVFDLRDKERS--TIIY--E-----NPVQDCPLLR  215 (339)
Q Consensus       152 d~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~--~-----~~~~~~~v~~  215 (339)
                      ++.+ ++.......+    ..++. ...|. +...++..+.+|.|++.|+.+....  ..+.  .     ..-.......
T Consensus       205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~  284 (386)
T 3sjl_D          205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ  284 (386)
T ss_dssp             ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred             ECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence            9876 5532211111    12221 24554 3334444667899999999766421  1111  0     0000122334


Q ss_pred             EEEecCCCCeEEEEeeC---------CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEE-EeCCCcEEEEEe
Q 040307          216 LEWNKADPRFMATVGMD---------SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCS-VADDSRALIWEV  285 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d---------~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~iwd~  285 (339)
                      ++++| +++.+++...+         +..|.++|+.+ .+.+.++.. ...+++++++|++..+|++ ...++.|.++|.
T Consensus       285 ~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          285 VAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             eeECC-CCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            67787 66666665431         12499999988 666666654 3478899999998435555 456899999999


Q ss_pred             cCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      .+.+             .+......+..+.+.+++|
T Consensus       362 ~t~k-------------~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          362 ESGE-------------ELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             TTCC-------------EEEEECCCCSSCCEEEECC
T ss_pred             CCCc-------------EEEEecCCCCCceeEECCc
Confidence            9887             4544444555566677665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.46  E-value=2.3e-11  Score=111.91  Aligned_cols=238  Identities=11%  Similarity=0.071  Sum_probs=145.7

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEE-----eCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVAT-----SGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT  141 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~-----~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  141 (339)
                      ++...+..++||||+     ++||-     |++  .|++||+.+++.... .+..       .....++|+  |++.|+.
T Consensus       126 ~~~~~l~~~~~SpDg-----~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~-------~k~~~~~Ws--Dg~~l~y  190 (693)
T 3iuj_A          126 DGTTALDQLSFSRDG-----RILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD-------VKFSGISWL--GNEGFFY  190 (693)
T ss_dssp             TSCCEEEEEEECTTS-----SEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE-------EESCCCEEE--TTTEEEE
T ss_pred             CCcEEEEEEEECCCC-----CEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC-------ceeccEEEe--CCCEEEE
Confidence            345568889999999     77773     334  899999999873222 2222       112467898  7788888


Q ss_pred             EeCCC-------------eEEEEECCCCee----eeeeec-cCCceeEEEec-CCcEEEEEeC----CCcEEEEECCCCc
Q 040307          142 CSVDT-------------TCVIWDIDREIL----ETQLVA-HDREVYDISWG-GFNVFASVSG----DCSVRVFDLRDKE  198 (339)
Q Consensus       142 ~~~d~-------------~v~i~d~~~~~~----~~~~~~-~~~~v~~~~~~-~~~~l~~~~~----d~~i~i~d~~~~~  198 (339)
                      ++.+.             .|++|++.++..    +..... |......+.|+ ++++|+....    +..|+++|+.++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence            77764             499999977642    222233 44457789999 7777654432    2589999998764


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCC-ceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTN-PVVVLSKHEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                      ........  +....... |++.++.+++....++  ..|..+|+..... ....+..|...+.  .|++++..++++..
T Consensus       271 ~~~~~l~~--~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          271 APLLTVQG--DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             CCCEEEEC--SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             CceEEEeC--CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence            22222222  22333443 5553444555544432  2489999876332 1355666666665  89999854444444


Q ss_pred             CCC--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC----CeEEEEe
Q 040307          276 DDS--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV----NKLQLLK  338 (339)
Q Consensus       276 ~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----~~v~~w~  338 (339)
                      .++  .|++|++....            .........+.+..+.++|++..++....+    +.+..|+
T Consensus       346 ~~g~~~l~~~d~~g~~------------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          346 VDATARVEQFDYEGKR------------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             ETTEEEEEEECTTSCE------------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             ECCeeEEEEEECCCCe------------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            555  57788776433            111223345568888889988776654333    5666665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=4.7e-10  Score=95.01  Aligned_cols=253  Identities=9%  Similarity=-0.071  Sum_probs=154.2

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec------CCCCc
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD------HPYTP   74 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~v   74 (339)
                      +.+.+.+....... .++++||   +++|+++..      .+..++.|.+||..  +.+...  .+..+      +....
T Consensus        56 t~~~~~~i~~g~~p-~i~~spD---g~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~--~i~~~~~~~~~~g~~p  127 (373)
T 2mad_H           56 SGSILGHVNGGFLP-NPVAAHS---GSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIA--DIELPDAPRFDVGPYS  127 (373)
T ss_pred             CCeEEEEecCCCCC-CeEECCC---CCEEEEEeccccccccCCCCCeEEEEECC--CCcEEE--EEECCCccccccCCCc
Confidence            34445555444444 9999999   998888752      01136789996654  333332  11111      12345


Q ss_pred             eEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307           75 TNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        75 ~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      ..+.|+|++     ++|..+.   + .|.++| .+++  .... +...      .   ++.+.|.....+++.+.||.+.
T Consensus       128 ~~~~~spDG-----~~l~v~n~~~~~~v~viD-~t~~--~~~~~i~~~------~---~~~~~~~~~~~~~~~~~dg~~~  190 (373)
T 2mad_H          128 WMNANTPNN-----ADLLFFQFAAGPAVGLVV-QGGS--SDDQLLSSP------T---CYHIHPGAPSTFYLLCAQGGLA  190 (373)
T ss_pred             cceEECCCC-----CEEEEEecCCCCeEEEEE-CCCC--EEeEEcCCC------c---eEEEEeCCCceEEEEcCCCCEE
Confidence            689999999     6655543   2 799999 8876  5555 4331      1   2344443446677778899999


Q ss_pred             EEECCCCeeeeeee-----ccCCce-eEEEec-CCcEEEEEeCCCcEEEEECCCCccee-eEEeC-C-------CCCCCe
Q 040307          150 IWDIDREILETQLV-----AHDREV-YDISWG-GFNVFASVSGDCSVRVFDLRDKERST-IIYEN-P-------VQDCPL  213 (339)
Q Consensus       150 i~d~~~~~~~~~~~-----~~~~~v-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~-~-------~~~~~v  213 (339)
                      ++|. +++......     ....++ ....+. ++..++..+..+.+.+.|+....... ..+.. .       ......
T Consensus       191 ~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~  269 (373)
T 2mad_H          191 KTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW  269 (373)
T ss_pred             EEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence            9999 776553321     111121 223444 33444444467899999997653211 11100 0       011224


Q ss_pred             EEEEEecCCCCeEEEEee----------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEE
Q 040307          214 LRLEWNKADPRFMATVGM----------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALI  282 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~~~----------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i  282 (339)
                      ..+.++| +++.+++...          .+. |.++|..+ .+.+.++.. .....+++|+|++..+++++. .++.|.+
T Consensus       270 ~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~-V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~V  345 (373)
T 2mad_H          270 QQVAYLK-SSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHI  345 (373)
T ss_pred             EeEEECC-CCCEEEEEeccCCcccccCCCCe-EEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence            4578888 6666666543          234 99999987 566677754 446899999999943677766 5899999


Q ss_pred             EEecCCC
Q 040307          283 WEVVGPG  289 (339)
Q Consensus       283 wd~~~~~  289 (339)
                      +|+.+.+
T Consensus       346 iD~~t~~  352 (373)
T 2mad_H          346 YDAGAGD  352 (373)
T ss_pred             EECCCCC
Confidence            9999887

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.44  E-value=4.1e-10  Score=93.85  Aligned_cols=218  Identities=7%  Similarity=-0.009  Sum_probs=136.4

Q ss_pred             ceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           74 PTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      ..+..|+|++.    .++.+.. + .|..|+.++++.   ..+.. .     ..+.++.|+| +++++++. . ..|.+|
T Consensus        51 ~egp~~~~~~~----~l~~~d~~~~~i~~~d~~~~~~---~~~~~-~-----~~v~~i~~~~-dg~l~v~~-~-~gl~~~  114 (326)
T 2ghs_A           51 GEGPTFDPASG----TAWWFNILERELHELHLASGRK---TVHAL-P-----FMGSALAKIS-DSKQLIAS-D-DGLFLR  114 (326)
T ss_dssp             EEEEEEETTTT----EEEEEEGGGTEEEEEETTTTEE---EEEEC-S-----SCEEEEEEEE-TTEEEEEE-T-TEEEEE
T ss_pred             CcCCeEeCCCC----EEEEEECCCCEEEEEECCCCcE---EEEEC-C-----CcceEEEEeC-CCeEEEEE-C-CCEEEE
Confidence            46789999862    5666664 3 899999887652   22222 2     5789999997 78777654 3 459999


Q ss_pred             ECCCCeeeeeeec----cCCceeEEEec-CCcEEEEEeC------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307          152 DIDREILETQLVA----HDREVYDISWG-GFNVFASVSG------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK  220 (339)
Q Consensus       152 d~~~~~~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p  220 (339)
                      |..+++.......    ....+.++.++ +++++++...      .+.|..+|  +++ ...+...   ......++|+|
T Consensus       115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~---~~~~~~i~~s~  188 (326)
T 2ghs_A          115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFAD---ISIPNSICFSP  188 (326)
T ss_dssp             ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEE---ESSEEEEEECT
T ss_pred             ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCC---CcccCCeEEcC
Confidence            9987764322211    12357889999 6776665432      24555555  333 2222221   23567899998


Q ss_pred             CCCCeEEEEee-CCCeEEEEecC-CCC-Cc-----eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307          221 ADPRFMATVGM-DSNKVVVLDIR-FPT-NP-----VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS  292 (339)
Q Consensus       221 ~~~~~l~~~~~-d~~~i~i~d~~-~~~-~~-----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~  292 (339)
                       +++.|+.+.. ++. |.+||+. ..+ ..     +..+.........++++++| .+.++...++.|.+|+.. ++   
T Consensus       189 -dg~~lyv~~~~~~~-I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~-g~---  261 (326)
T 2ghs_A          189 -DGTTGYFVDTKVNR-LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GN---  261 (326)
T ss_dssp             -TSCEEEEEETTTCE-EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CC---
T ss_pred             -CCCEEEEEECCCCE-EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC-CC---
Confidence             7776655544 455 9999985 112 11     11222234567889999998 576666667889999873 33   


Q ss_pred             CCCCCCCcccceeeecccceeEEEEec-CCCCceEEEe
Q 040307          293 GNGGPSGDVEPELCYQSMAEINVVRWS-PLELDWIAIA  329 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-p~~~~l~~~~  329 (339)
                               .......+...+++++|+ |++..|+.++
T Consensus       262 ---------~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          262 ---------HIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ---------EEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ---------EEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence                     112222344569999998 8877665444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.44  E-value=7.4e-11  Score=100.73  Aligned_cols=272  Identities=10%  Similarity=0.015  Sum_probs=166.7

Q ss_pred             ccEEEEeeeccccC----CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-----------CC
Q 040307           32 KSRLAVGSFLEDYS----NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-----------GD   96 (339)
Q Consensus        32 ~~~la~g~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-----------~~   96 (339)
                      +..+.+...   .+    +.|.+  ++..+.+...  .+..+.  .. .+.++|+++    .++++.           ++
T Consensus        84 ~~~vyV~n~---~~~~~~~~VsV--ID~~t~~vv~--~I~vG~--~P-gia~SpDgk----~lyVan~~~~~~~~G~~~~  149 (426)
T 3c75_H           84 ARRVYIQDP---AHFAAITQQFV--IDGSTGRILG--MTDGGF--LP-HPVAAEDGS----FFAQASTVFERIARGKRTD  149 (426)
T ss_dssp             TTEEEEEEC---TTTCSSEEEEE--EETTTTEEEE--EEEECS--SC-EEEECTTSS----CEEEEEEEEEETTEEEEEE
T ss_pred             CCEEEEECC---CcCCCCCeEEE--EECCCCEEEE--EEECCC--CC-ceEECCCCC----EEEEEeccccccccCCCCC
Confidence            566666552   22    78999  5555555554  333332  23 899999994    444443           12


Q ss_pred             cEEEEeecCCcceeEEEeecC--CCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           97 SLRLWEIHDDRTELKSLLNSN--KTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      .|.++|..+.+  ....+.-.  ...........+.++| ++++++.+..  ++.|.+.|+.+.+.+..+..-. . ..+
T Consensus       150 ~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~-~~~  224 (426)
T 3c75_H          150 YVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-C-YHI  224 (426)
T ss_dssp             EEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEE
T ss_pred             EEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-c-eee
Confidence            89999999887  45444321  0000002234788998 9999988874  5789999999999888775321 1 111


Q ss_pred             EecCCcEEEEEeCCCcEEEEECCCCcceee---EEeCCCCCCC-eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-
Q 040307          173 SWGGFNVFASVSGDCSVRVFDLRDKERSTI---IYENPVQDCP-LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-  247 (339)
Q Consensus       173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~-v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-  247 (339)
                      .-.....+++.+.||.+.+.++..++....   .+..  ...+ ...+.+.+ ++..++..+..+. +.+.|+...... 
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v--~~~p~~~~~~~~~-dg~~~~~~s~~g~-V~ViD~~~~~~~v  300 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT--EDELLINHPAFSL-RSGRLVWPTYTGK-IFQADLTAEGATF  300 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC--TTSCBCSCCEECT-TTCEEEEEBTTSE-EEEEEECSSCEEE
T ss_pred             ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc--CCCceeeEeeecC-CCCEEEEEeCCCc-EEEEeccCCceEE
Confidence            111346677788899999999855543211   1111  1112 12356787 6666666666776 999998642210 


Q ss_pred             eEEEec----------CCCCeeEEEeccCCCCeEEEEe---------CCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307          248 VVVLSK----------HEGSVNGISWAPLYGRRLCSVA---------DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ  308 (339)
Q Consensus       248 ~~~~~~----------~~~~v~~~~~~p~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  308 (339)
                      +..+..          .......++++|++.+++++..         .++.|.++|+.+.+             .+....
T Consensus       301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k-------------vv~~I~  367 (426)
T 3c75_H          301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE-------------RINKIE  367 (426)
T ss_dssp             CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-------------EEEEEE
T ss_pred             eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe-------------EEEEEE
Confidence            011100          0112234789999854444432         13579999999988             444444


Q ss_pred             ccceeEEEEecCCCC-ceEEEe-cCCeEEEEeC
Q 040307          309 SMAEINVVRWSPLEL-DWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       309 ~~~~i~~~~~~p~~~-~l~~~~-~d~~v~~w~v  339 (339)
                      -......++|+|+++ .++++. .++.|.++++
T Consensus       368 vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          368 LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             EEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence            444689999999998 777777 5899999874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=3.4e-10  Score=97.19  Aligned_cols=235  Identities=10%  Similarity=-0.016  Sum_probs=150.2

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      ..+..++|+|+   ++++++..    .++.|++|+.  ++.....   + ........ ++|++++     +.|..+. +
T Consensus       131 ~~P~~la~d~~---g~lyv~d~----~~~~I~~id~--~~g~~~~---~-~~~~~~~~-ia~~~~g-----~~l~~~d~~  191 (409)
T 3hrp_A          131 KYMWGIAAVGN---NTVLAYQR----DDPRVRLISV--DDNKVTT---V-HPGFKGGK-PAVTKDK-----QRVYSIGWE  191 (409)
T ss_dssp             CCEEEEEECST---TEEEEEET----TTTEEEEEET--TTTEEEE---E-EETCCBCB-CEECTTS-----SEEEEEBSS
T ss_pred             CCceEEEEeCC---CCEEEEec----CCCcEEEEEC--CCCEEEE---e-eccCCCCc-eeEecCC-----CcEEEEecC
Confidence            36789999999   88777666    5789999554  4444432   1 12233344 9999999     6655554 2


Q ss_pred             ---cEEEEeecCCcceeEEEe---ec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee----eecc
Q 040307           97 ---SLRLWEIHDDRTELKSLL---NS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ----LVAH  165 (339)
Q Consensus        97 ---~i~iw~~~~~~~~~~~~~---~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~----~~~~  165 (339)
                         .|.+++.....  ....+   .. ..     ..+.+++++| ++..|+.+..++.|+.||..++.....    ..+.
T Consensus       192 ~~~~I~~~d~~~~~--~~~~~g~~~~~~~-----~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~  263 (409)
T 3hrp_A          192 GTHTVYVYMKASGW--APTRIGQLGSTFS-----GKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS  263 (409)
T ss_dssp             TTCEEEEEEGGGTT--CEEEEEECCTTSC-----SCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred             CCceEEEEEcCCCc--eeEEeeeccchhc-----CCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence               67777776654  22222   11 11     4567899998 445555577789999999987653222    1122


Q ss_pred             CCce-e-EEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCC------------CCCCCeEEEEEecCCCCeEEEE
Q 040307          166 DREV-Y-DISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENP------------VQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       166 ~~~v-~-~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                      ...- . .++|++  +.++++-...+.|+.||....  ...+....            ..-.....++++| +++++++-
T Consensus       264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad  340 (409)
T 3hrp_A          264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVD  340 (409)
T ss_dssp             CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEE
T ss_pred             CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEe
Confidence            2222 2 899994  556666667788999987654  22222110            0013478999998 78866665


Q ss_pred             e-eCCCeEEEEecCCCCCceEEEecC---------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          230 G-MDSNKVVVLDIRFPTNPVVVLSKH---------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       230 ~-~d~~~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      . .++. |+.||+.. + .+..+.++               -.....++++|++ .++++-..+++|+.++++
T Consensus       341 ~~~~~~-I~~~~~~~-G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          341 GFKGYC-LRKLDILD-G-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTTCE-EEEEETTT-T-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEEC
T ss_pred             CCCCCE-EEEEECCC-C-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEeC
Confidence            5 5555 99999754 3 24555544               2357899999997 688888888889888763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.41  E-value=3.5e-10  Score=93.32  Aligned_cols=225  Identities=11%  Similarity=-0.006  Sum_probs=143.7

Q ss_pred             cCCCCceEEEEcCCCCCCCCC-eEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           69 DHPYTPTNIAFFPSEETLNPD-IVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~-~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..........|+|++     + ++.++..  .|..|+. +++   ...+....     ..+..+++++ +++++++...+
T Consensus        42 ~~~~~~egp~~~~~g-----~~l~~~d~~~~~i~~~~~-~g~---~~~~~~~~-----~~~~gl~~d~-dG~l~v~~~~~  106 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQ-----RTLVWSDLVGRRVLGWRE-DGT---VDVLLDAT-----AFTNGNAVDA-QQRLVHCEHGR  106 (305)
T ss_dssp             CCCSSEEEEEEEGGG-----TEEEEEETTTTEEEEEET-TSC---EEEEEESC-----SCEEEEEECT-TSCEEEEETTT
T ss_pred             cCCcCccCCeEeCCC-----CEEEEEECCCCEEEEEeC-CCC---EEEEeCCC-----CccceeeECC-CCCEEEEECCC
Confidence            444567789999999     6 6666653  8999987 343   23333333     5788999998 88877766666


Q ss_pred             CeEEEEECCCCeeeeeeecc-----CCceeEEEec-CCcEEEE----EeC-------------CCcEEEEECCCCcceee
Q 040307          146 TTCVIWDIDREILETQLVAH-----DREVYDISWG-GFNVFAS----VSG-------------DCSVRVFDLRDKERSTI  202 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~-----~~~v~~~~~~-~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~  202 (339)
                      +.|.+|+.. ++. ..+..+     ...+.++++. +++++++    +..             .+.|..+|..+++....
T Consensus       107 ~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          107 RAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             TEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             CEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence            899999985 542 222111     1346778998 7777775    321             24677777766653333


Q ss_pred             EEeCCCCCCCeEEEEEecCCCCeEEEEeeC------CCeEEEEecCCCCCceEE---E-ecCCCCeeEEEeccCCCCeEE
Q 040307          203 IYENPVQDCPLLRLEWNKADPRFMATVGMD------SNKVVVLDIRFPTNPVVV---L-SKHEGSVNGISWAPLYGRRLC  272 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------~~~i~i~d~~~~~~~~~~---~-~~~~~~v~~~~~~p~~~~~l~  272 (339)
                      . ..    .....++|+| +++.|+++...      +. |.+|++....  +..   + .........++++++| ++ .
T Consensus       185 ~-~~----~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~-i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G-~l-w  253 (305)
T 3dr2_A          185 A-DL----DHPNGLAFSP-DEQTLYVSQTPEQGHGSVE-ITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGG-WL-W  253 (305)
T ss_dssp             E-EE----SSEEEEEECT-TSSEEEEEECCC---CCCE-EEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTS-CE-E
T ss_pred             e-cC----CCCcceEEcC-CCCEEEEEecCCcCCCCCE-EEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCC-CE-E
Confidence            2 22    3567899998 88877776665      45 9999987532  211   1 1123445689999998 44 4


Q ss_pred             EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307          273 SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       273 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      +++.+ .|.+|+... +             .+........+.+++|+|++..|+.++.++..++
T Consensus       254 v~~~~-gv~~~~~~g-~-------------~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          254 SSSGT-GVCVFDSDG-Q-------------LLGHIPTPGTASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             ECCSS-EEEEECTTS-C-------------EEEEEECSSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EecCC-cEEEECCCC-C-------------EEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            44444 488888743 2             2333333336899999999887777766544443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.40  E-value=3.4e-10  Score=93.39  Aligned_cols=226  Identities=9%  Similarity=-0.015  Sum_probs=144.3

Q ss_pred             cCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           17 QWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ........|+|+   ++ +++++.    .++.|..|+.  .+ ...   .+ ..+...+..+++++++     +++++..
T Consensus        44 ~~~~egp~~~~~---g~~l~~~d~----~~~~i~~~~~--~g-~~~---~~-~~~~~~~~gl~~d~dG-----~l~v~~~  104 (305)
T 3dr2_A           44 ATWSEGPAWWEA---QRTLVWSDL----VGRRVLGWRE--DG-TVD---VL-LDATAFTNGNAVDAQQ-----RLVHCEH  104 (305)
T ss_dssp             CSSEEEEEEEGG---GTEEEEEET----TTTEEEEEET--TS-CEE---EE-EESCSCEEEEEECTTS-----CEEEEET
T ss_pred             CcCccCCeEeCC---CCEEEEEEC----CCCEEEEEeC--CC-CEE---EE-eCCCCccceeeECCCC-----CEEEEEC
Confidence            345678899999   88 455555    6788888654  22 222   22 3455678999999999     8777765


Q ss_pred             C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE----EeC-------------CCeEEEEECCCC
Q 040307           96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT----CSV-------------DTTCVIWDIDRE  156 (339)
Q Consensus        96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~~-------------d~~v~i~d~~~~  156 (339)
                      .  .|.+|+.+ ++...+....  . ......+.++++.| +++++++    |..             .+.|..+|..++
T Consensus       105 ~~~~v~~~~~~-g~~~~~~~~~--~-~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g  179 (305)
T 3dr2_A          105 GRRAITRSDAD-GQAHLLVGRY--A-GKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS  179 (305)
T ss_dssp             TTTEEEEECTT-SCEEEEECEE--T-TEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred             CCCEEEEECCC-CCEEEEEecc--C-CCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence            3  89999876 4422221111  1 00113567899998 8888876    332             356888887666


Q ss_pred             eeeeeeeccCCceeEEEec-CCcEEEEEeCC------CcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          157 ILETQLVAHDREVYDISWG-GFNVFASVSGD------CSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      +.....  .......++|+ +++.|+.+...      +.|.+||+......  ..+...  .......+++++ +|++.+
T Consensus       180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~-~G~lwv  254 (305)
T 3dr2_A          180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDR-GGWLWS  254 (305)
T ss_dssp             CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECT-TSCEEE
T ss_pred             cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECC-CCCEEE
Confidence            543332  33456789999 67767766654      68999998765411  111111  223456788887 777444


Q ss_pred             EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS  278 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  278 (339)
                       ++ .+. |.+||..  ++.+..+..+. .+..++|+|++ +.|..++.++
T Consensus       255 -~~-~~g-v~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~  298 (305)
T 3dr2_A          255 -SS-GTG-VCVFDSD--GQLLGHIPTPG-TASNCTFDQAQ-QRLFITGGPC  298 (305)
T ss_dssp             -CC-SSE-EEEECTT--SCEEEEEECSS-CCCEEEECTTS-CEEEEEETTE
T ss_pred             -ec-CCc-EEEECCC--CCEEEEEECCC-ceeEEEEeCCC-CEEEEEcCCe
Confidence             34 345 9999974  55666666554 58899999988 4677766654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.35  E-value=7.5e-10  Score=94.54  Aligned_cols=256  Identities=9%  Similarity=0.001  Sum_probs=157.9

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeec------cccCCeEEEEecCCCCCcccceeeEeec------CCCC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFL------EDYSNKIELVNFNPETSDFSADNRLIFD------HPYT   73 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~   73 (339)
                      .+.+.+.++...... .++++|+   +++|.++...      ++.++.|.+  ++..+.+...  .+..+      ....
T Consensus       107 ~t~~vv~~I~vG~~P-gia~SpD---gk~lyVan~~~~~~~~G~~~~~Vsv--iD~~t~~vv~--~I~v~g~~r~~~g~~  178 (426)
T 3c75_H          107 STGRILGMTDGGFLP-HPVAAED---GSFFAQASTVFERIARGKRTDYVEV--FDPVTFLPIA--DIELPDAPRFLVGTY  178 (426)
T ss_dssp             TTTEEEEEEEECSSC-EEEECTT---SSCEEEEEEEEEETTEEEEEEEEEE--ECTTTCCEEE--EEEETTCCCCCBSCC
T ss_pred             CCCEEEEEEECCCCC-ceEECCC---CCEEEEEeccccccccCCCCCEEEE--EECCCCcEEE--EEECCCccccccCCC
Confidence            345666666665555 8999999   9888887620      113678999  5555555544  22222      1235


Q ss_pred             ceEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307           74 PTNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      ...+.|+|++     +.+..+.   + .|.+.|+.+.+  .+..+....       .  ....|.....+++.+.||.+.
T Consensus       179 P~~~~~spDG-----k~lyV~n~~~~~~VsVID~~t~k--vv~~I~v~g-------~--~~~~p~g~~~~v~~~~dG~~~  242 (426)
T 3c75_H          179 QWMNALTPDN-----KNLLFYQFSPAPAVGVVDLEGKT--FDRMLDVPD-------C--YHIFPASPTVFYMNCRDGSLA  242 (426)
T ss_dssp             GGGSEECTTS-----SEEEEEECSSSCEEEEEETTTTE--EEEEEECCS-------E--EEEEEEETTEEEEEETTSSEE
T ss_pred             cceEEEcCCC-----CEEEEEecCCCCeEEEEECCCCe--EEEEEEcCC-------c--eeeccCCCcEEEEEcCCCCEE
Confidence            6789999999     5555432   3 89999999987  555555421       1  222332335666777788888


Q ss_pred             EEECCCCeeeee----eeccCCce-eEEEec-CCcEEEEEeCCCcEEEEECCCCcceee-EEeCC---C-----CCCCeE
Q 040307          150 IWDIDREILETQ----LVAHDREV-YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTI-IYENP---V-----QDCPLL  214 (339)
Q Consensus       150 i~d~~~~~~~~~----~~~~~~~v-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~---~-----~~~~v~  214 (339)
                      +.+..+++....    +.....++ ..+.|. ++..++.....+.+.+.|......... .....   .     ......
T Consensus       243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~  322 (426)
T 3c75_H          243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ  322 (426)
T ss_dssp             EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred             EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence            888855554321    21111121 124556 566666667788999999876542110 00000   0     001122


Q ss_pred             EEEEecCCCCeEEEEee----------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEE
Q 040307          215 RLEWNKADPRFMATVGM----------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIW  283 (339)
Q Consensus       215 ~~~~~p~~~~~l~~~~~----------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iw  283 (339)
                      .++++| +++.+++...          .+. |.++|+.+ .+.+.++.. .....+++|+|++..++++.. .++.|.++
T Consensus       323 ~va~s~-dg~rlyVa~~~~~~gthk~~s~~-VsVID~~T-~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          323 QTAYHR-QSDRIYLLVDQRDEWKHKAASRF-VVVLNAET-GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             CEEEEG-GGTEEEEEEEECCTTCTTSCEEE-EEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             eeEEcC-CCCEEEEEecccccccccCCCCE-EEEEECCC-CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            368898 6666655543          234 99999988 666777764 235889999999942677776 68999999


Q ss_pred             EecCCC
Q 040307          284 EVVGPG  289 (339)
Q Consensus       284 d~~~~~  289 (339)
                      |+.+.+
T Consensus       399 D~~t~k  404 (426)
T 3c75_H          399 DAATGE  404 (426)
T ss_dssp             ETTTCC
T ss_pred             ECCCCC
Confidence            999988

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=4.8e-10  Score=103.15  Aligned_cols=243  Identities=11%  Similarity=0.052  Sum_probs=145.6

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccc-cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLED-YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      ..+..++||||   +++||.+....+ ....|+++++.  +++.... .+   .......++|+ |+     +.|+.+. 
T Consensus       129 ~~l~~~~~SpD---g~~lAy~~~~~G~~~~~i~v~dl~--tg~~~~~-~~---~~~k~~~~~Ws-Dg-----~~l~y~~~  193 (693)
T 3iuj_A          129 TALDQLSFSRD---GRILAYSLSLAGSDWREIHLMDVE--SKQPLET-PL---KDVKFSGISWL-GN-----EGFFYSSY  193 (693)
T ss_dssp             CEEEEEEECTT---SSEEEEEEECSSCCEEEEEEEETT--TCSEEEE-EE---EEEESCCCEEE-TT-----TEEEEEES
T ss_pred             EEEEEEEECCC---CCEEEEEEecCCCceEEEEEEECC--CCCCCcc-cc---CCceeccEEEe-CC-----CEEEEEEe
Confidence            35788899999   999997653111 23567775554  4444321 11   11113577899 98     5555443 


Q ss_pred             C--------------cEEEEeecCCcceeEEEee--c-CCCccCCCCEEEEEEcCCCCCEEEEEeC----CCeEEEEECC
Q 040307           96 D--------------SLRLWEIHDDRTELKSLLN--S-NKTSEFSSAITSFDWAGFDTRRVATCSV----DTTCVIWDID  154 (339)
Q Consensus        96 ~--------------~i~iw~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~v~i~d~~  154 (339)
                      +              .|++|++.+........+.  . +.     ..+..+.|+| ++++|+....    ...|+++|+.
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~-----~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~  267 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH-----HRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLS  267 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC-----CSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETT
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC-----eEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECC
Confidence            2              3899998876532222222  2 22     4577899998 8887765432    3589999997


Q ss_pred             CCe-eeeeeeccCCceeEEEecCCc-EEEEEeCC---CcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          155 REI-LETQLVAHDREVYDISWGGFN-VFASVSGD---CSVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       155 ~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      ++. ....+..+.........+++. +++....+   +.|..+|+.++..  ...+..   +...+.  .|+| +++.|+
T Consensus       268 ~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~--~~s~-~g~~lv  341 (693)
T 3iuj_A          268 QENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQQVL--TVHS-GSGYLF  341 (693)
T ss_dssp             STTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCE--EEEE-ETTEEE
T ss_pred             CCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCCCEE--EEEE-ECCEEE
Confidence            764 345555566555554223444 44454443   5789999988654  122222   223333  7887 666666


Q ss_pred             EEeeCCC--eEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307          228 TVGMDSN--KVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVAD---DSRALIWEVVGPG  289 (339)
Q Consensus       228 ~~~~d~~--~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~  289 (339)
                      ....++.  .|++||+..  .....+.. ..+.+..+.++|+++.++++.+.   -+.+..||+...+
T Consensus       342 ~~~~~~g~~~l~~~d~~g--~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          342 AEYMVDATARVEQFDYEG--KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEETTEEEEEEECTTS--CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEECCeeEEEEEECCC--CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            6555442  388888763  33444432 34567788888988645555443   2788888876654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.32  E-value=1.3e-08  Score=86.25  Aligned_cols=227  Identities=10%  Similarity=0.011  Sum_probs=137.5

Q ss_pred             CCCCCCCCCeEEEeC-C--cEEEEeecCC--cceeEEEeecCC---CccCCCCEEEEEEcCCCCCEEEEEeCC------C
Q 040307           81 PSEETLNPDIVATSG-D--SLRLWEIHDD--RTELKSLLNSNK---TSEFSSAITSFDWAGFDTRRVATCSVD------T  146 (339)
Q Consensus        81 ~~~~~~~~~~la~~~-~--~i~iw~~~~~--~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~d------~  146 (339)
                      +++     ++|...+ .  .|.++|+.+.  +.+...+++..+   ..+. ..-..+...| ++ +++++..+      |
T Consensus        93 ~~r-----~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g  164 (462)
T 2ece_A           93 IER-----RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGP-DA-IYISALGNEEGEGPG  164 (462)
T ss_dssp             CCS-----CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECS-SC-EEEEEEEETTSCSCC
T ss_pred             ccC-----CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECC-Ce-EEEEcCCCcCCCCCC
Confidence            666     5555544 3  9999999754  334555553100   0000 1334566777 77 66666555      7


Q ss_pred             eEEEEECCCCeeeeeeeccCC---ceeEEEec-CCcEEEEEe-------------------CCCcEEEEECCCCcceeeE
Q 040307          147 TCVIWDIDREILETQLVAHDR---EVYDISWG-GFNVFASVS-------------------GDCSVRVFDLRDKERSTII  203 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~~---~v~~~~~~-~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~  203 (339)
                      .|.++|.++.+.+..+.....   --..+.|+ +++.+++..                   ...+|.+||+.+.+....+
T Consensus       165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence            899999999998888752222   23457778 677777774                   3689999999987544443


Q ss_pred             EeCCCCCCCeEEEEE--ecCCCCeEEEEee-----CCCeEEEEecCCCCCc--eEE--Eec----------------CCC
Q 040307          204 YENPVQDCPLLRLEW--NKADPRFMATVGM-----DSNKVVVLDIRFPTNP--VVV--LSK----------------HEG  256 (339)
Q Consensus       204 ~~~~~~~~~v~~~~~--~p~~~~~l~~~~~-----d~~~i~i~d~~~~~~~--~~~--~~~----------------~~~  256 (339)
                      .... .......+.|  +| +++++++++.     ....|.+|.... +..  ...  +..                -..
T Consensus       245 ~vg~-~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~  321 (462)
T 2ece_A          245 TLGE-ENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP  321 (462)
T ss_dssp             ESCT-TEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred             ecCC-CCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCC
Confidence            3321 1123445555  88 8888888776     544477765543 210  011  000                023


Q ss_pred             CeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc---------------ceeEEEEecC
Q 040307          257 SVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM---------------AEINVVRWSP  320 (339)
Q Consensus       257 ~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~p  320 (339)
                      ....|.+|||+. +|.++. ..+.|.+||+....          ...........               +....++++|
T Consensus       322 ~pa~I~lS~DGr-fLYVSnrg~d~VavfdV~d~~----------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp  390 (462)
T 2ece_A          322 LVTDIDISLDDK-FLYLSLWGIGEVRQYDISNPF----------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR  390 (462)
T ss_dssp             CCCCEEECTTSC-EEEEEETTTTEEEEEECSSTT----------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred             ceeEEEECCCCC-EEEEEeCCCCEEEEEEecCCC----------CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence            578899999995 555544 67899999997443          01111111111               1357899999


Q ss_pred             CCCceEEEe
Q 040307          321 LELDWIAIA  329 (339)
Q Consensus       321 ~~~~l~~~~  329 (339)
                      +|++|+++.
T Consensus       391 DGk~LyVaN  399 (462)
T 2ece_A          391 DGRRVYVTN  399 (462)
T ss_dssp             TSSEEEEEC
T ss_pred             CCCEEEEEc
Confidence            999888776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.24  E-value=1.2e-09  Score=91.71  Aligned_cols=249  Identities=11%  Similarity=-0.004  Sum_probs=149.8

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeec------cccCCeEEEEecCCCCCcccceeeEeecC------CCC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFL------EDYSNKIELVNFNPETSDFSADNRLIFDH------PYT   73 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~------~~~   73 (339)
                      .+.+.+.++...... .+.++|+   ++++.++...      +..++.|.+  ++..+.+...  .+..+.      ...
T Consensus        54 ~t~~v~~~i~vG~~P-~i~~spD---g~~lyVan~~~~r~~~G~~~~~Vsv--iD~~T~~vv~--~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           54 GCGVTLGHSLGAFLS-LAVAGHS---GSDFALASTSFARSAKGKRTDYVEV--FDPVTFLPIA--DIELPDAPRFSVGPR  125 (368)
T ss_dssp             TTTEEEEEEEECTTC-EEEECTT---SSCEEEEEEEETTTTSSSEEEEEEE--ECTTTCCEEE--EEEETTSCSCCBSCC
T ss_pred             CCCeEEEEEeCCCCC-ceEECCC---CCEEEEEcccccccccCCCCCEEEE--EECCCCCEEE--EEECCCccccccCCC
Confidence            456677777765555 8999999   9888887620      113688999  5555555554  332220      135


Q ss_pred             ceEEEEcCCCCCCCCCeEEEe--C-C-cEEE--EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           74 PTNIAFFPSEETLNPDIVATS--G-D-SLRL--WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~--~-~-~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      ...++++||+     +++..+  + + .+.+  +|..+     ...+...      ..   ....|.....+++.+.|+.
T Consensus       126 P~~ia~SpDG-----k~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~------~~---~~~~p~g~~~~~~~~~dg~  186 (368)
T 1mda_H          126 VHIIGNCASS-----ACLLFFLFGSSAAAGLSVPGASD-----DQLTKSA------SC---FHIHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             TTSEEECTTS-----SCEEEEECSSSCEEEEEETTTEE-----EEEEECS------SC---CCCEEEETTEEECCCCTTS
T ss_pred             cceEEEcCCC-----CEEEEEccCCCCeEEEEEEchhh-----ceEEECC------Cc---eEEccCCCeEEEEEcCCCC
Confidence            7899999999     555544  2 2 6777  88766     2223221      11   1122323445566677888


Q ss_pred             EEEEECCC-----Ceeee----eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCccee-eEEeCCC--------C
Q 040307          148 CVIWDIDR-----EILET----QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERST-IIYENPV--------Q  209 (339)
Q Consensus       148 v~i~d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~--------~  209 (339)
                      +.+.|+.+     ++...    .+.....+.   ...++..++..+. +.+.+.|+....... .......        .
T Consensus       187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~  262 (368)
T 1mda_H          187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred             EEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence            88888876     43221    111112233   3444555555556 899999987543111 1010000        0


Q ss_pred             CCCeEEEEEecCCCCeEEEEee-C--------CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCc
Q 040307          210 DCPLLRLEWNKADPRFMATVGM-D--------SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSR  279 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~-d--------~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~  279 (339)
                      ......++++| +++.++++.. .        +. +.++|+.+ .+.+.++.... ....++|+|++.+++++.. .++.
T Consensus       263 p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~  338 (368)
T 1mda_H          263 SAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAEN-TSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV  338 (368)
T ss_dssp             ECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEE-EEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred             cCcceeeEEcC-CCCEEEEEeccccCcccccCCC-EEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe
Confidence            01112268998 6676666543 2        34 77999988 55566665433 6889999999955677777 6999


Q ss_pred             EEEEEecCCC
Q 040307          280 ALIWEVVGPG  289 (339)
Q Consensus       280 v~iwd~~~~~  289 (339)
                      |.++|+.+.+
T Consensus       339 VsVID~~t~k  348 (368)
T 1mda_H          339 LDIYDAASDQ  348 (368)
T ss_dssp             EEEEESSSCE
T ss_pred             EEEEECCCCc
Confidence            9999999987

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.21  E-value=3.5e-08  Score=83.64  Aligned_cols=231  Identities=11%  Similarity=0.064  Sum_probs=141.1

Q ss_pred             ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe---e--cC-CCCceEEEEcCCCCCCCCCeEEEeC-----
Q 040307           27 VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI---F--DH-PYTPTNIAFFPSEETLNPDIVATSG-----   95 (339)
Q Consensus        27 p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~---~--~~-~~~v~~l~~~~~~~~~~~~~la~~~-----   95 (339)
                      ++   +++|.+.+.   .++.|.++|...+.........++   .  .. ......+..+|++     -++.+.+     
T Consensus        93 ~~---r~~l~v~~l---~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-----i~Vs~~g~~~g~  161 (462)
T 2ece_A           93 IE---RRFLIVPGL---RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-----IYISALGNEEGE  161 (462)
T ss_dssp             CC---SCEEEEEBT---TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-----EEEEEEEETTSC
T ss_pred             cc---CCEEEEccC---CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-----EEEEcCCCcCCC
Confidence            66   777777663   789999977754433333322331   0  11 1245677888987     4443322     


Q ss_pred             --CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-------------------CCCeEEEEECC
Q 040307           96 --DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-------------------VDTTCVIWDID  154 (339)
Q Consensus        96 --~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------------------~d~~v~i~d~~  154 (339)
                        +.|.+.|.++.+  .+.++......  ..--..+.|+| +++.++++.                   ...+|.+||+.
T Consensus       162 ~~g~v~vlD~~T~~--v~~~~~~~~~~--~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~  236 (462)
T 2ece_A          162 GPGGILMLDHYSFE--PLGKWEIDRGD--QYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR  236 (462)
T ss_dssp             SCCEEEEECTTTCC--EEEECCSBCTT--CCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred             CCCeEEEEECCCCe--EEEEEccCCCC--ccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence              179999998887  56665532100  01233578898 888888874                   37899999999


Q ss_pred             CCeeeeeeecc--CCceeEEEe--c-CCcEEEEEe------CCCcEEEEECCCCccee--eEEeCCC-------------
Q 040307          155 REILETQLVAH--DREVYDISW--G-GFNVFASVS------GDCSVRVFDLRDKERST--IIYENPV-------------  208 (339)
Q Consensus       155 ~~~~~~~~~~~--~~~v~~~~~--~-~~~~l~~~~------~d~~i~i~d~~~~~~~~--~~~~~~~-------------  208 (339)
                      +++.+.++..-  ......+.|  + +++++.+++      .+++|.+|....+....  .+.....             
T Consensus       237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f  316 (462)
T 2ece_A          237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF  316 (462)
T ss_dssp             TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred             CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence            98877777542  123456666  6 566665555      56788776655432111  1000000             


Q ss_pred             --CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCC--------------CCeeEEEeccCCCCe
Q 040307          209 --QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHE--------------GSVNGISWAPLYGRR  270 (339)
Q Consensus       209 --~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~--------------~~v~~~~~~p~~~~~  270 (339)
                        .......+.++| ++++|+++......|.+||+.....  .+..+....              +.-..++++|+| ++
T Consensus       317 ~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~  394 (462)
T 2ece_A          317 KAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RR  394 (462)
T ss_dssp             TEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SE
T ss_pred             ccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CE
Confidence              013567899998 8999988887666799999864332  233333210              135889999999 57


Q ss_pred             EEEEe
Q 040307          271 LCSVA  275 (339)
Q Consensus       271 l~~~~  275 (339)
                      |+++.
T Consensus       395 LyVaN  399 (462)
T 2ece_A          395 VYVTN  399 (462)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77766

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.18  E-value=2.7e-07  Score=74.32  Aligned_cols=253  Identities=9%  Similarity=-0.023  Sum_probs=144.0

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcc-cceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDF-SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE  109 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~  109 (339)
                      .+|..+.     .+.|+.++++...... .....+ ......+..++|++++.    .++++.. . .|..++.+...  
T Consensus         2 ~~l~~~~-----~~~I~~~~~~g~~~~~~~~~~~~-~~~~~~~~gi~~d~~~~----~ly~~d~~~~~I~~~~~~g~~--   69 (267)
T 1npe_A            2 THLLFAQ-----TGKIERLPLERNTMKKTEAKAFL-HIPAKVIIGLAFDCVDK----VVYWTDISEPSIGRASLHGGE--   69 (267)
T ss_dssp             EEEEEEE-----EEEEEEEEESSSCBCGGGCEEEE-EEEEEEEEEEEEETTTT----EEEEEETTTTEEEEEESSSCC--
T ss_pred             cEEEEEc-----CCeEEEEEecCcccccccceeee-cCCCCcEEEEEEecCCC----EEEEEECCCCEEEEEecCCCC--
Confidence            4566666     4578876665433211 110111 11124578999999762    5555554 3 89999987664  


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeC---
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSG---  185 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~---  185 (339)
                      ....+....     .....++++|..+.++++-...+.|.++++..................+++++ +..|..+..   
T Consensus        70 ~~~~~~~~~-----~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~  144 (267)
T 1npe_A           70 PTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD  144 (267)
T ss_dssp             CEEEECTTC-----CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred             cEEEEECCC-----CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC
Confidence            222222211     45789999973344555555678999999864332222222224568899983 555544443   


Q ss_pred             CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc
Q 040307          186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP  265 (339)
Q Consensus       186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p  265 (339)
                      .+.|..+++..... ..+...  .-.....++++| ++..|+.+......|.++|... ......+.. ......++.. 
T Consensus       145 ~~~I~~~~~dg~~~-~~~~~~--~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi~~d-  217 (267)
T 1npe_A          145 NPKIETSHMDGTNR-RILAQD--NLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAVTSY-  217 (267)
T ss_dssp             SCEEEEEETTSCCC-EEEECT--TCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEEEEE-
T ss_pred             CcEEEEEecCCCCc-EEEEEC--CCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCceEEEEe-
Confidence            36788888765432 222222  224678999998 6666655555444499999864 222222222 2334566654 


Q ss_pred             CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec--ccceeEEEEecCCCC
Q 040307          266 LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ--SMAEINVVRWSPLEL  323 (339)
Q Consensus       266 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~  323 (339)
                       ++.++++....+.|..+|..+++             ......  .......+++.|++.
T Consensus       218 -~~~lyva~~~~~~v~~~d~~~g~-------------~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          218 -GKNLYYTDWKTNSVIAMDLAISK-------------EMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTTE-------------EEEEECCSSCCCCCCEEEECSCC
T ss_pred             -CCEEEEEECCCCeEEEEeCCCCC-------------ceEEEccccccccceeeecCccC
Confidence             43455555567889999987765             222221  122467777777753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.18  E-value=5.5e-09  Score=87.73  Aligned_cols=253  Identities=7%  Similarity=-0.087  Sum_probs=147.7

Q ss_pred             eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-----------CCcEEEEeecCCcceeEEEee
Q 040307           47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-----------GDSLRLWEIHDDRTELKSLLN  115 (339)
Q Consensus        47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-----------~~~i~iw~~~~~~~~~~~~~~  115 (339)
                      .|.+  ++..+.+...  .+..+.. +  .+.++|+++    .++++.           ++.|.+||+.+.+  ...++.
T Consensus        47 ~vsv--ID~~t~~v~~--~i~vG~~-P--~i~~spDg~----~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~  113 (368)
T 1mda_H           47 ENWV--SCAGCGVTLG--HSLGAFL-S--LAVAGHSGS----DFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIE  113 (368)
T ss_dssp             EEEE--EETTTTEEEE--EEEECTT-C--EEEECTTSS----CEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEE
T ss_pred             eEEE--EECCCCeEEE--EEeCCCC-C--ceEECCCCC----EEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEE
Confidence            7778  5666666655  4433433 3  799999994    444443           1289999999987  566654


Q ss_pred             cCCCccC--CCCEEEEEEcCCCCCEEEEEeC--CCeEEE--EECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcE
Q 040307          116 SNKTSEF--SSAITSFDWAGFDTRRVATCSV--DTTCVI--WDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSV  189 (339)
Q Consensus       116 ~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~--d~~v~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i  189 (339)
                      ......+  ......+.++| ++++++++..  +..|.+  +|+.+   +..+.. .+. ..+.-.....+++.+.|+.+
T Consensus       114 v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~-~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          114 LPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC-FHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC-CCCEEEETTEEECCCCTTSC
T ss_pred             CCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc-eEEccCCCeEEEEEcCCCCE
Confidence            3200000  01234789998 9999888875  467888  88876   344431 111 11111234566677788999


Q ss_pred             EEEECCC----CcceeeEE--eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-ceEEEec-------CC
Q 040307          190 RVFDLRD----KERSTIIY--ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-PVVVLSK-------HE  255 (339)
Q Consensus       190 ~i~d~~~----~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~-------~~  255 (339)
                      .+.|+..    ........  ..+-...+.   . .+ ++..++..+. +. +.+.|...... .+..+..       +.
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~  260 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADN  260 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccc
Confidence            8999886    22111000  000112333   3 55 4454444455 76 99999864221 1111110       00


Q ss_pred             ---CCeeEEEeccCCCCeEEEE-e---C-----CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307          256 ---GSVNGISWAPLYGRRLCSV-A---D-----DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL  323 (339)
Q Consensus       256 ---~~v~~~~~~p~~~~~l~~~-~---~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  323 (339)
                         .....++++|++. .++.+ .   .     ++.+.++|+.+.+             .+....-......++|+|+++
T Consensus       261 ~~p~g~~~v~~s~dg~-~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-------------vv~~i~vg~~p~gi~~s~Dg~  326 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQ-------------TSGPISNGHDSDAIIAAQDGA  326 (368)
T ss_dssp             EEECSSSCEEEETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCC-------------EEECCEEEEEECEEEECCSSS
T ss_pred             cccCcceeeEEcCCCC-EEEEEeccccCcccccCCCEEEEECCCCe-------------EEEEEECCCCcceEEECCCCC
Confidence               1122378999985 55543 3   2     2356699999987             343333334689999999998


Q ss_pred             ceE-EEe-cCCeEEEEeC
Q 040307          324 DWI-AIA-FVNKLQLLKV  339 (339)
Q Consensus       324 ~l~-~~~-~d~~v~~w~v  339 (339)
                      .++ +.. .++.|.++++
T Consensus       327 ~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          327 SDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             CEEEEEETTTTEEEEEES
T ss_pred             EEEEEccCCCCeEEEEEC
Confidence            654 555 5899999874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=4.4e-08  Score=89.71  Aligned_cols=181  Identities=11%  Similarity=0.006  Sum_probs=115.8

Q ss_pred             EEEEcCCCCCEEEEEeCCCe-------------------EEEEECCCCeeeeeeec--cC-------CceeEEEec-CCc
Q 040307          128 SFDWAGFDTRRVATCSVDTT-------------------CVIWDIDREILETQLVA--HD-------REVYDISWG-GFN  178 (339)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~~-------------------v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~  178 (339)
                      .++++| +..+++.+..++.                   |..+|.++++.+..++.  |.       .+....... ++.
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            567887 7788888887764                   99999999998877753  21       111111222 343


Q ss_pred             ---EEEEEeCCCcEEEEECCCCcceeeEEeCC-------------------------CCC-----------CCeEEEEEe
Q 040307          179 ---VFASVSGDCSVRVFDLRDKERSTIIYENP-------------------------VQD-----------CPLLRLEWN  219 (339)
Q Consensus       179 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------~~~-----------~~v~~~~~~  219 (339)
                         .++.++.+|.++++|.++++........+                         ...           ..-..++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999988542211110                         000           011236888


Q ss_pred             cCCCCeEEEEee---------------------------------------------CCCeEEEEecCCCCCceEEEecC
Q 040307          220 KADPRFMATVGM---------------------------------------------DSNKVVVLDIRFPTNPVVVLSKH  254 (339)
Q Consensus       220 p~~~~~l~~~~~---------------------------------------------d~~~i~i~d~~~~~~~~~~~~~~  254 (339)
                      | +..++++...                                             ++. |..||+.+ ++.+.++..+
T Consensus       398 p-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~-l~A~D~~t-G~~~W~~~~~  474 (689)
T 1yiq_A          398 P-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK-LIAWDPVK-QQAAWEVPYV  474 (689)
T ss_dssp             T-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE-EEEEETTT-TEEEEEEEES
T ss_pred             C-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee-EEEEECCC-CCeEeEccCC
Confidence            8 5556665532                                             244 88999987 5556666554


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEE
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIA  327 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~  327 (339)
                      . .+..-.+...+ .+++.++.||.++.||.++++             .+-.+  .+.....-+.|..+|+.+++
T Consensus       475 ~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~-------------~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          475 T-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGE-------------KLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             S-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------------EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             C-CccCccceECC-CEEEEECCCCcEEEEECCCCc-------------cceeeeCCCCcccCceEEEECCEEEEE
Confidence            3 33444566666 489999999999999999988             34222  22222344677788876664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.15  E-value=6.5e-08  Score=82.16  Aligned_cols=257  Identities=9%  Similarity=-0.067  Sum_probs=145.6

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCce-EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT-NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~  109 (339)
                      +..+.+++    .++.|..++  ..+++..-  .  ......+. .... .++     .+++...+ .|..+|..+++  
T Consensus       103 ~~~v~v~~----~~g~l~a~d--~~tG~~~W--~--~~~~~~~~~~p~~-~~~-----~v~v~~~~g~l~~~d~~tG~--  164 (376)
T 3q7m_A          103 GGHVYIGS----EKAQVYALN--TSDGTVAW--Q--TKVAGEALSRPVV-SDG-----LVLIHTSNGQLQALNEADGA--  164 (376)
T ss_dssp             TTEEEEEE----TTSEEEEEE--TTTCCEEE--E--EECSSCCCSCCEE-ETT-----EEEEECTTSEEEEEETTTCC--
T ss_pred             CCEEEEEc----CCCEEEEEE--CCCCCEEE--E--EeCCCceEcCCEE-ECC-----EEEEEcCCCeEEEEECCCCc--
Confidence            44666677    588888854  44444433  1  11111221 1122 244     45554445 89999998887  


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc----------e-eEEEecCCc
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE----------V-YDISWGGFN  178 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~----------v-~~~~~~~~~  178 (339)
                      .+....................   .+..++.++.++.|..+|..+++.+.........          + ..... .+.
T Consensus       165 ~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~  240 (376)
T 3q7m_A          165 VKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNG  240 (376)
T ss_dssp             EEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETT
T ss_pred             EEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECC
Confidence            4433332210000000011122   2356777888999999999999877665422110          0 01111 256


Q ss_pred             EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCC
Q 040307          179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGS  257 (339)
Q Consensus       179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~  257 (339)
                      .+..++.++.+..+|.++++..-.. ..    .....+..   .+..+++++.++. +..+|..+ ++.+..... ....
T Consensus       241 ~v~~~~~~g~l~~~d~~tG~~~w~~-~~----~~~~~~~~---~~~~l~~~~~~g~-l~~~d~~t-G~~~w~~~~~~~~~  310 (376)
T 3q7m_A          241 VVFALAYNGNLTALDLRSGQIMWKR-EL----GSVNDFIV---DGNRIYLVDQNDR-VMALTIDG-GVTLWTQSDLLHRL  310 (376)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEE-CC----CCEEEEEE---ETTEEEEEETTCC-EEEEETTT-CCEEEEECTTTTSC
T ss_pred             EEEEEecCcEEEEEECCCCcEEeec-cC----CCCCCceE---ECCEEEEEcCCCe-EEEEECCC-CcEEEeecccCCCc
Confidence            7777888999999999988743221 11    23444444   3566777788888 99999987 455544442 1222


Q ss_pred             eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEE-EEecCCCCceEEEecCCeEE
Q 040307          258 VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINV-VRWSPLELDWIAIAFVNKLQ  335 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~-~~~~p~~~~l~~~~~d~~v~  335 (339)
                      +......  + ..|+.++.+|.|.++|..+++             .+..... ...+.. ... .+ ..++.++.+|.|.
T Consensus       311 ~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~-------------~~~~~~~~~~~~~~~~~~-~~-~~l~v~~~~G~l~  372 (376)
T 3q7m_A          311 LTSPVLY--N-GNLVVGDSEGYLHWINVEDGR-------------FVAQQKVDSSGFQTEPVA-AD-GKLLIQAKDGTVY  372 (376)
T ss_dssp             CCCCEEE--T-TEEEEECTTSEEEEEETTTCC-------------EEEEEECCTTCBCSCCEE-ET-TEEEEEBTTSCEE
T ss_pred             ccCCEEE--C-CEEEEEeCCCeEEEEECCCCc-------------EEEEEecCCCcceeCCEE-EC-CEEEEEeCCCEEE
Confidence            3333332  3 378888999999999998877             3322211 222221 222 23 3588889999999


Q ss_pred             EEe
Q 040307          336 LLK  338 (339)
Q Consensus       336 ~w~  338 (339)
                      .|+
T Consensus       373 ~~~  375 (376)
T 3q7m_A          373 SIT  375 (376)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            886

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=6.5e-08  Score=88.44  Aligned_cols=182  Identities=9%  Similarity=0.023  Sum_probs=117.2

Q ss_pred             EEEEcCCCCCEEEEEeCCC-------------------eEEEEECCCCeeeeeeec--cC-------CceeEEEec-CC-
Q 040307          128 SFDWAGFDTRRVATCSVDT-------------------TCVIWDIDREILETQLVA--HD-------REVYDISWG-GF-  177 (339)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~-------------------~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~-~~-  177 (339)
                      .++++| +..+++.+..++                   .|..+|.++++.+..++.  |.       ....-+... ++ 
T Consensus       247 ~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            567887 677888777654                   599999999998877653  21       111222222 45 


Q ss_pred             --cEEEEEeCCCcEEEEECCCCcceeeEEeCCCC-------CCC-e------------------------EEEEEecCCC
Q 040307          178 --NVFASVSGDCSVRVFDLRDKERSTIIYENPVQ-------DCP-L------------------------LRLEWNKADP  223 (339)
Q Consensus       178 --~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~-v------------------------~~~~~~p~~~  223 (339)
                        ..++.++.+|.++++|.++++..-.....+..       .+. +                        ..++++| +.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~  404 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT  404 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence              68899999999999999998854333211000       000 1                        2568888 55


Q ss_pred             CeEEEEeeC-------------------------------------------CCeEEEEecCCCCCceEEEecCCCCeeE
Q 040307          224 RFMATVGMD-------------------------------------------SNKVVVLDIRFPTNPVVVLSKHEGSVNG  260 (339)
Q Consensus       224 ~~l~~~~~d-------------------------------------------~~~i~i~d~~~~~~~~~~~~~~~~~v~~  260 (339)
                      .++++...+                                           +. |..||+.+ ++.+.++.. ..++..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D~~t-G~~~W~~~~-~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWDPVA-QKAAWSVEH-VSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEETTT-TEEEEEEEE-SSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEeCCC-CcEEeecCC-CCCCcC
Confidence            666665432                                           44 99999987 555555553 345556


Q ss_pred             EEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEE
Q 040307          261 ISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAI  328 (339)
Q Consensus       261 ~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~  328 (339)
                      ..+...+ .+++.++.||.+++||..+++             .+..+  .+.....-+.|.++|+.+++.
T Consensus       482 g~~~~~g-~~v~~g~~dg~l~a~D~~tG~-------------~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          482 GTLTTAG-NVVFQGTADGRLVAYHAATGE-------------KLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             CEEEETT-TEEEEECTTSEEEEEETTTCC-------------EEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cceEeCC-CEEEEECCCCcEEEEECCCCc-------------eeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence            6677777 488889999999999999988             33222  222233446667888765543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.12  E-value=7e-08  Score=76.75  Aligned_cols=204  Identities=9%  Similarity=0.059  Sum_probs=137.7

Q ss_pred             ecCCC--CceEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307           68 FDHPY--TPTNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT  141 (339)
Q Consensus        68 ~~~~~--~v~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  141 (339)
                      +.|..  ....+.|++++     .++++.+   + .|+++|+.+++  .+..+....   . .....+++.  .+.+.++
T Consensus        15 ~p~~~~~f~~Gl~~~~dg-----~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~---~-~fgeGi~~~--g~~lyv~   81 (266)
T 2iwa_A           15 FPHDPYAFTQGLVYAEND-----TLFESTGLYGRSSVRQVALQTGK--VENIHKMDD---S-YFGEGLTLL--NEKLYQV   81 (266)
T ss_dssp             EECCTTCCEEEEEECSTT-----EEEEEECSTTTCEEEEEETTTCC--EEEEEECCT---T-CCEEEEEEE--TTEEEEE
T ss_pred             EECCCCCCcccEEEeCCC-----eEEEECCCCCCCEEEEEECCCCC--EEEEEecCC---C-cceEEEEEe--CCEEEEE
Confidence            45554  35899999987     7777764   2 99999999998  444443211   0 123356665  3455566


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC--CCCCeEEEEEe
Q 040307          142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPV--QDCPLLRLEWN  219 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~  219 (339)
                      .-.++.+.++|..+.+.+.++......-..++. ++..++++..++.|.++|..+.+....+.....  .-..+..+.|.
T Consensus        82 t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           82 VWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             ETTCSEEEEEETTTTEEEEEEECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             EecCCEEEEEECCCCcEEEEEECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            667899999999999988888532122234555 455555666789999999999876555443211  11246778887


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                        ++.+.+....++. |.+.|..+ ++.+..+...             ....+.|+|+|++.++++++...+.+.+.++.
T Consensus       161 --dg~lyvn~~~~~~-V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          161 --NGEVWANIWQTDC-IARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             --TTEEEEEETTSSE-EEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             --CCEEEEecCCCCe-EEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence              5654444434555 99999987 6666666532             13568999999987778888888999999988


Q ss_pred             CCC
Q 040307          287 GPG  289 (339)
Q Consensus       287 ~~~  289 (339)
                      ...
T Consensus       237 ~~~  239 (266)
T 2iwa_A          237 LVR  239 (266)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.11  E-value=1.3e-09  Score=90.81  Aligned_cols=234  Identities=9%  Similarity=-0.039  Sum_probs=131.1

Q ss_pred             CCceeeeeeccCCeeE-EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYMAQWPIST-VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~-i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++.+-++.....+.+ +....+   + .|.+++    .++.|..|+   .+++...  .. ......+.++...+++  
T Consensus         8 ~g~~~W~~~~~~~~~~~~~~d~~---g-~l~v~t----~~~~l~~~d---~~g~~~~--~~-~~~~~~~~~~~~~~~g--   71 (330)
T 3hxj_A            8 DCKIKWEFLIGNSIDSSPILAKN---G-TIYLGS----SNKNLYAIN---TDGSVKW--FF-KSGEIIECRPSIGKDG--   71 (330)
T ss_dssp             ----CCTTTSCEEECCCCEECTT---S-CEECSS----TTTTTEEEC---TTSCEEE--SS-CGGGEEEECCEETTTT--
T ss_pred             CceEEEEEeCCCCcccCceEccC---C-eEEEEc----CCCEEEEEC---CCCcEEE--EE-ecCCCcccceEEecCC--
Confidence            3445555544433322 233233   4 466666    578888855   2333322  11 1122335667777777  


Q ss_pred             CCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           86 LNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        86 ~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                         .+++...+ +..+|. +++  ....+....     .........   +..+..++.++.|..+|.. ++........
T Consensus        72 ---~l~v~t~~-l~~~d~-~g~--~~~~~~~~~-----~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~  135 (330)
T 3hxj_A           72 ---TIYFGSDK-VYAINP-DGT--EKWRFDTKK-----AIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTK  135 (330)
T ss_dssp             ---EECCSSCE-EEEECC-CGG--GGGGSCC----------CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred             ---cEEEecCc-EEEECC-CCc--EEEEEECCC-----CcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence               56555445 777775 333  211121111     111222222   4567778889999999988 7766666545


Q ss_pred             CCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          166 DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       166 ~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      ...+.++...++..+..++.++.|..+|.. ++.... ...  ....+.++...+ ++.+. +++  +. +..+| .. +
T Consensus       136 ~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~-~~~--~~~~~~~~~~d~-~g~l~-v~t--~~-l~~~d-~~-g  204 (330)
T 3hxj_A          136 KAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWR-FKT--NDAITSAASIGK-DGTIY-FGS--DK-VYAIN-PD-G  204 (330)
T ss_dssp             SCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEE-EEC--SSCCCSCCEECT-TCCEE-EES--SS-EEEEC-TT-S
T ss_pred             CceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEE-Eec--CCCceeeeEEcC-CCEEE-EEe--CE-EEEEC-CC-C
Confidence            555566666634446667788999999988 543322 222  234556667754 55544 445  66 99999 44 4


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      +.+.........+.++...+++  .|..++.++.+..+|.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          205 TEKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP  242 (330)
T ss_dssp             CEEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT
T ss_pred             cEEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC
Confidence            5555555555678888888887  4566666777777763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.10  E-value=2e-08  Score=84.23  Aligned_cols=207  Identities=11%  Similarity=0.026  Sum_probs=122.2

Q ss_pred             CCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeee-------eccCCceeEEEec-CCcEEEEEeC-----CCc
Q 040307          124 SAITSFDWAGFDTRRVATCS--VDTTCVIWDIDREILETQL-------VAHDREVYDISWG-GFNVFASVSG-----DCS  188 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~-------~~~~~~v~~~~~~-~~~~l~~~~~-----d~~  188 (339)
                      .....++++| +++++++..  .++.++||.+.+++. ..+       ..+-..+..++++ +++++++-..     ++.
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            3678999998 888888864  234245555545542 222       1234578999999 5665555433     578


Q ss_pred             EEEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEEEEe---eCCCeEEEEecCCCCCceEEEecC--------
Q 040307          189 VRVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMATVG---MDSNKVVVLDIRFPTNPVVVLSKH--------  254 (339)
Q Consensus       189 i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~---~d~~~i~i~d~~~~~~~~~~~~~~--------  254 (339)
                      |.+||+.+++....+...   ..+...+..++++|.++..+++..   .++. |.+||+.. ++....+..|        
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~-g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQT-GLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTT-CCEEEECTTCTTTSCCSC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECCC-CCEEEEecCCCccccccc
Confidence            999999987743333221   012235689999974454445544   4566 99999875 3333333221        


Q ss_pred             ---------------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC--CCCCCCCCCCCcccceeeecccc
Q 040307          255 ---------------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP--GYRSGNGGPSGDVEPELCYQSMA  311 (339)
Q Consensus       255 ---------------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~  311 (339)
                                           ...+..++|+|++ +.|+.+..++. ++|.+...  .....  ........+...++..
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~--~~~~~~~~~~~~g~~g  248 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQL--TDAELGSKIERYSEKP  248 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTC--CHHHHHTTCEEEEECC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCC--ChhhhhcceEecccCC
Confidence                                 1236889999999 57777776653 45554421  10000  0000000011223344


Q ss_pred             eeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          312 EINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ....++++++|..+++...++.|.+|+
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEE
Confidence            567899999998777777888999986

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.09  E-value=3e-07  Score=74.08  Aligned_cols=223  Identities=10%  Similarity=0.036  Sum_probs=128.6

Q ss_pred             eEEEeCCcEEEEeecCCccee---EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           90 IVATSGDSLRLWEIHDDRTEL---KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        90 ~la~~~~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      ++.+..+.|+.++++......   ...+....     ..+.+++|+|.++.++++-...+.|..+++........+....
T Consensus         4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             EEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             EEEEcCCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            333333488888887654210   11121111     3567999997344455555567899999987654333332222


Q ss_pred             CceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC--CCeEEEEecC
Q 040307          167 REVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD--SNKVVVLDIR  242 (339)
Q Consensus       167 ~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--~~~i~i~d~~  242 (339)
                      .....++++ . +.++++-...+.|.++++...... .+...  .......++++| ++..|+.+...  ...|..+++.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~--~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT--GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS--SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC--CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecC
Confidence            467889998 4 445555556788999998754422 22222  124678999998 44444444432  2238888875


Q ss_pred             CCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          243 FPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       243 ~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      .  .....+. ........++++|++..++++-...+.|.++++....             .............++..  
T Consensus       155 g--~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~-------------~~~~~~~~~~P~gi~~d--  217 (267)
T 1npe_A          155 G--TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-------------RRKVLEGLQYPFAVTSY--  217 (267)
T ss_dssp             S--CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-------------EEEEEECCCSEEEEEEE--
T ss_pred             C--CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc-------------eEEEecCCCCceEEEEe--
Confidence            4  2223332 2234678999999875455666667889999987543             12121222233456553  


Q ss_pred             CCceEEEe-cCCeEEEEe
Q 040307          322 ELDWIAIA-FVNKLQLLK  338 (339)
Q Consensus       322 ~~~l~~~~-~d~~v~~w~  338 (339)
                      +..++.+. .++.|..++
T Consensus       218 ~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          218 GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEe
Confidence            34455444 556777665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=3.4e-08  Score=82.09  Aligned_cols=210  Identities=11%  Similarity=-0.059  Sum_probs=132.5

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR  167 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  167 (339)
                      .+.+...+ .+..+|.+ ++  .........     ..+.++...+ ++. +..++.++.|..+|.. ++....+.....
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~--~~~~~~~~~-----~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~  177 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GT--EKWRFKTKK-----AIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA  177 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SC--EEEEEECSS-----CCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred             EEEEEecCCEEEEEcCC-CC--EEEEEcCCC-----ceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence            45554445 89999987 54  333333332     3345555654 444 6667788999999998 776666655555


Q ss_pred             ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307          168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN  246 (339)
Q Consensus       168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~  246 (339)
                      .+.++... ++. +..++  +.|..+| .+++..-. ...  ....+.++...+ ++ .|.+++.++. +..+|..  +.
T Consensus       178 ~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~-~~~--~~~~~~~~~~~~-~g-~l~v~t~~~g-l~~~~~~--g~  245 (330)
T 3hxj_A          178 ITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWN-FYA--GYWTVTRPAISE-DG-TIYVTSLDGH-LYAINPD--GT  245 (330)
T ss_dssp             CCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEE-ECC--SSCCCSCCEECT-TS-CEEEEETTTE-EEEECTT--SC
T ss_pred             ceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEE-Ecc--CCcceeceEECC-CC-eEEEEcCCCe-EEEECCC--CC
Confidence            66777776 455 44444  7899999 55543222 222  234567777765 54 4556677777 8888743  44


Q ss_pred             ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCce
Q 040307          247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDW  325 (339)
Q Consensus       247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l  325 (339)
                      .+..+......+..+...+++  .|..++.+|.|..+|. .++             ..... .....+.++...+++. +
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~-------------~~~~~~~~~~~~~~~~~d~~g~-l  308 (330)
T 3hxj_A          246 EKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGT-------------EKWNFETGSWIIATPVIDENGT-I  308 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSC-------------EEEEEECSSCCCSCCEECTTCC-E
T ss_pred             EeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCc-------------EEEEEEcCCccccceEEcCCCE-E
Confidence            455555544445566666665  5777888888999985 333             22222 2344567777778875 7


Q ss_pred             EEEecCCeEEEEe
Q 040307          326 IAIAFVNKLQLLK  338 (339)
Q Consensus       326 ~~~~~d~~v~~w~  338 (339)
                      ..++.+|.+++..
T Consensus       309 ~~gt~~G~~~~~~  321 (330)
T 3hxj_A          309 YFGTRNGKFYALF  321 (330)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             EEEcCCCeEEEEe
Confidence            7888999888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.07  E-value=4.8e-07  Score=71.95  Aligned_cols=189  Identities=8%  Similarity=-0.035  Sum_probs=125.1

Q ss_pred             EEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccCC-ceeEEEecCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307          126 ITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHDR-EVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       126 i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  202 (339)
                      ...+.|+| ++.++++.+.  ++.|.++|+.+++.+..+.-... ....+++.++.++++.-.++.+.++|..+.+....
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            57999997 6665555553  68999999999998887642221 22356666556666666789999999998876555


Q ss_pred             EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC-----CCeeEEEeccCCCCeEEEEeCC
Q 040307          203 IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-----GSVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      +... . . .  ...+++ +++.++++..++. |.++|..+ .+.+..+....     ..++.+.|. ++ .+.+....+
T Consensus       102 i~~g-~-~-~--g~glt~-Dg~~l~vs~gs~~-l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~  171 (266)
T 2iwa_A          102 FTHQ-M-K-D--GWGLAT-DGKILYGSDGTSI-LYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQT  171 (266)
T ss_dssp             EECC-S-S-S--CCEEEE-CSSSEEEECSSSE-EEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTS
T ss_pred             EECC-C-C-C--eEEEEE-CCCEEEEECCCCe-EEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCC
Confidence            4322 1 1 1  133455 5666666555555 99999987 45555554321     136788888 66 466666578


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCcccceeeecc--------------cceeEEEEecCCCCceEE-EecCCeEEEEe
Q 040307          278 SRALIWEVVGPGYRSGNGGPSGDVEPELCYQS--------------MAEINVVRWSPLELDWIA-IAFVNKLQLLK  338 (339)
Q Consensus       278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~~p~~~~l~~-~~~d~~v~~w~  338 (339)
                      +.|.+.|..+++             .......              ....+.|+|+|++..++. +...+.+...+
T Consensus       172 ~~V~vID~~tg~-------------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          172 DCIARISAKDGT-------------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             SEEEEEETTTCC-------------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             CeEEEEECCCCc-------------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            899999999887             2222111              135689999999877665 44667776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.02  E-value=5.8e-11  Score=100.64  Aligned_cols=177  Identities=8%  Similarity=-0.064  Sum_probs=94.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL  213 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  213 (339)
                      ++..+++++.||.|+.||..+++.+..+..  +.+.+..+. ++..+++++.|+.|+.||..+++..-.. ... ....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~-~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFT-IPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCC-HHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-ecc-Ccccc
Confidence            567899999999999999999998888765  455544444 5667788889999999999877643221 110 00000


Q ss_pred             -EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307          214 -LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS  292 (339)
Q Consensus       214 -~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~  292 (339)
                       .+..+.  .+..+++++.++. ++.||.++ ++.+..+..+.    ...++|++ ..+++++.|+.|+.||..+++   
T Consensus        84 ~~sp~~~--~~~~v~~g~~dg~-v~a~D~~t-G~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~---  151 (369)
T 2hz6_A           84 QASPCRS--SDGILYMGKKQDI-WYVIDLLT-GEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTRE---  151 (369)
T ss_dssp             TTCSCC-------CCCCEEEEE-EEEECCC----------------------------EEEEEEEEEEECCCSSSSS---
T ss_pred             ccCceEe--cCCEEEEEeCCCE-EEEEECCC-CcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCC---
Confidence             011111  3456677788888 99999987 55555555443    24556776 588889999999999998877   


Q ss_pred             CCCCCCCcccceeeecccceeEEEEecCCC---CceEEEecCCeEEEEe
Q 040307          293 GNGGPSGDVEPELCYQSMAEINVVRWSPLE---LDWIAIAFVNKLQLLK  338 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~---~~l~~~~~d~~v~~w~  338 (339)
                                ..-..... .....++.++.   ..+++++.|+.|+.|+
T Consensus       152 ----------~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d  189 (369)
T 2hz6_A          152 ----------LRWNATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVD  189 (369)
T ss_dssp             ----------CCCEEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred             ----------EEEeEecc-cccCccccCCccccceEEEECCCCEEEEEE
Confidence                      22111110 11223333321   3467778888888776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.99  E-value=6.1e-06  Score=77.23  Aligned_cols=283  Identities=10%  Similarity=-0.033  Sum_probs=163.8

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE----eecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL----IFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|.++...++   +.+.+ |+    .++.|.+|+  ..+..+......    ..-....|.++...+++     .+.+.
T Consensus       215 ~~i~~i~~d~~---g~lwi-gt----~~~Gl~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lWig  279 (795)
T 4a2l_A          215 KQIQAILQQSP---TRIWV-AT----EGAGLFLIN--PKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN-----RLWIG  279 (795)
T ss_dssp             CCEEEEEEEET---TEEEE-EE----BSSCEEEEE--TTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS-----CEEEE
T ss_pred             CeeEEEEEcCC---CCEEE-EE----CCCCeEEEe--CCCCeEEEeecCCCCccccCCCeEEEEEEcCCC-----CEEEE
Confidence            45777777766   66444 44    244577744  444333320000    00113568999998888     66665


Q ss_pred             eCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-------cC
Q 040307           94 SGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA-------HD  166 (339)
Q Consensus        94 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-------~~  166 (339)
                      ..+-|.+|+..+.+.............-....|.++...+ ++. |-.|+.++-|..++..+... ..+..       ..
T Consensus       280 t~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~  356 (795)
T 4a2l_A          280 TFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSD  356 (795)
T ss_dssp             ESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSC
T ss_pred             eCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCC
Confidence            5457888988776422211100000011125799998885 555 55677778889998765432 12211       23


Q ss_pred             CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC-----CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307          167 REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN-----PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       167 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                      ..|.++.......|..|+.++-|..||..+..........     ......|.++...+ ++++|.+|+.+++ |..||.
T Consensus       357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~G-l~~~d~  434 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGG-LSILHR  434 (795)
T ss_dssp             SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTE-EEEEET
T ss_pred             CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCc-eeEEeC
Confidence            4688888874334556777778999998876532221110     01235788998875 6764667777777 999998


Q ss_pred             CCCCCceEEEe-----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-----ecccc
Q 040307          242 RFPTNPVVVLS-----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-----YQSMA  311 (339)
Q Consensus       242 ~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  311 (339)
                      .. ++ ...+.     .....|.++...+++.  |..|+. +.+.+||.....           ......     .-...
T Consensus       435 ~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~-----------~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          435 NS-GQ-VENFNQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRS-----------FTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             TT-CC-EEEECTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTE-----------EEECCBCTTCCBCCCC
T ss_pred             CC-Cc-EEEeecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCe-----------EEEccccccccccCCc
Confidence            75 32 33332     1245789999888873  444444 458888876543           001100     01235


Q ss_pred             eeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          312 EINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      .|.++...+++..++++ . +.|..|+
T Consensus       499 ~i~~i~~d~~g~lWigt-~-~Gl~~~~  523 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGG-E-EGLSVFK  523 (795)
T ss_dssp             CEEEEEECTTCCEEEEE-S-SCEEEEE
T ss_pred             eEEEEEECCCCCEEEEe-C-CceEEEe
Confidence            68899999888755544 3 4555553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.99  E-value=1.4e-07  Score=86.19  Aligned_cols=281  Identities=9%  Similarity=-0.044  Sum_probs=153.2

Q ss_pred             eeEEEeee-cCCcccEEEEeeecccc-----CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           20 ISTVAWSV-RHDRKSRLAVGSFLEDY-----SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        20 v~~i~~sp-~~~~~~~la~g~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      -.++++.| +   +++++.|+...+.     .+.-.++.++.....+.....+...+.....++++..++     ++++.
T Consensus       188 ~~~~av~~~~---g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----~lyv~  259 (656)
T 1k3i_A          188 PAAAAIEPTS---GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----QIVVT  259 (656)
T ss_dssp             CSEEEEETTT---TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-----CEEEE
T ss_pred             ceeEEEEecC---CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-----CEEEe
Confidence            34677787 7   8888988731110     122233445555555554333433344455568888999     89999


Q ss_pred             eC-C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CC-----CeEEEEECCCCeeeeeeec
Q 040307           94 SG-D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VD-----TTCVIWDIDREILETQLVA  164 (339)
Q Consensus        94 ~~-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----~~v~i~d~~~~~~~~~~~~  164 (339)
                      |+ +  .+.+||..+.++.....+....     . -.+++..+ ++++++.|+ .+     ..+.+||..+.+-.. +..
T Consensus       260 GG~~~~~v~~yd~~t~~W~~~~~~~~~R-----~-~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~  331 (656)
T 1k3i_A          260 GGNDAKKTSLYDSSSDSWIPGPDMQVAR-----G-YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPN  331 (656)
T ss_dssp             CSSSTTCEEEEEGGGTEEEECCCCSSCC-----S-SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETT
T ss_pred             CCCCCCceEEecCcCCceeECCCCCccc-----c-ccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCccee-CCC
Confidence            88 3  8999999988755443332211     1 12344544 889999988 34     579999998765222 100


Q ss_pred             -----cCCceeEEEec-CCcEEEEEeCC---------CcEEEEECCCCcceeeEEeCCC------CCCCeEEEEEecCCC
Q 040307          165 -----HDREVYDISWG-GFNVFASVSGD---------CSVRVFDLRDKERSTIIYENPV------QDCPLLRLEWNKADP  223 (339)
Q Consensus       165 -----~~~~v~~~~~~-~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~  223 (339)
                           ....-....+. ++..++.++.+         ..+..||..+............      ....-.++.|...++
T Consensus       332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~  411 (656)
T 1k3i_A          332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG  411 (656)
T ss_dssp             SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred             ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCC
Confidence                 00000001122 44455555444         3567888887653322211100      111234555554578


Q ss_pred             CeEEEEeeCC-------C---eEEEEecCCCCCceEEEe---cCCCCe-eEEEeccCCCCeEEEEeCC-----------C
Q 040307          224 RFMATVGMDS-------N---KVVVLDIRFPTNPVVVLS---KHEGSV-NGISWAPLYGRRLCSVADD-----------S  278 (339)
Q Consensus       224 ~~l~~~~~d~-------~---~i~i~d~~~~~~~~~~~~---~~~~~v-~~~~~~p~~~~~l~~~~~d-----------g  278 (339)
                      +++++|+.++       .   .+.+||.... . ...+.   .+.... .++...|++ ++++.|+.+           .
T Consensus       412 ~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~-W~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~  488 (656)
T 1k3i_A          412 KILTFGGSPDYQDSDATTNAHIITLGEPGTS-P-NTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVF  488 (656)
T ss_dssp             EEEEECCBSSSSSSBCCCCEEEEECCSTTSC-C-EEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCC
T ss_pred             eEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-C-eeEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCccc
Confidence            8888888542       0   2777887652 2 22221   122222 345667888 688888754           4


Q ss_pred             cEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceEEEec
Q 040307          279 RALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      .+.+||.....           ...+... ..........+.|+++.+++++.
T Consensus       489 ~v~~ydp~t~~-----------W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          489 TPEIYVPEQDT-----------FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCEEEEGGGTE-----------EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ceEEEcCCCCc-----------eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            68899987644           1111000 01111224455689987777763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.98  E-value=3.8e-10  Score=95.67  Aligned_cols=179  Identities=9%  Similarity=-0.077  Sum_probs=94.5

Q ss_pred             CeEEEe-CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           89 DIVATS-GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        89 ~~la~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      ..++++ .+ .|+.||..+++  .+..+.. .      .+.+..+.. ++..+++++.|+.|+.||.++++.+..+..+.
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~--~~W~~~~-~------~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~   79 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGS--IKWTLKE-D------PVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI   79 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCC--EEEEEEC-C------CSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred             CEEEEEcCCCEEEEEECCCCC--EEEEecC-C------CceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence            344444 45 99999999987  4444443 1      222333333 66778888899999999999888765554321


Q ss_pred             C-cee-EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          167 R-EVY-DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       167 ~-~v~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      . .+. ...+..+..+++++.++.|+.||.++++..-.....   .    ...++| .+..+++++.++. |+.||.++ 
T Consensus        80 ~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p-~~~~v~~~~~dg~-v~a~d~~t-  149 (369)
T 2hz6_A           80 PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSP-STSLLYLGRTEYT-ITMYDTKT-  149 (369)
T ss_dssp             HHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEE-EECCCSSS-
T ss_pred             ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccc-cCCEEEEEecCCE-EEEEECCC-
Confidence            1 111 111223556778888999999999988743332211   1    234566 7788888888888 99999987 


Q ss_pred             CCceEEEecCCCCeeEEEeccCC--CCeEEEEeCCCcEEEEEecCCC
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLY--GRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++.+..+..+.  .....++++.  ...+++++.||.|..||..+++
T Consensus       150 G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          150 RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            44444443221  2233344431  0257778899999999998877

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=4.8e-07  Score=71.15  Aligned_cols=195  Identities=13%  Similarity=0.089  Sum_probs=122.7

Q ss_pred             CceeeeeeccCCe--eEEEeeecCCcccEEEEeeeccccCC--eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307            8 KPGVHTYMAQWPI--STVAWSVRHDRKSRLAVGSFLEDYSN--KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE   83 (339)
Q Consensus         8 ~~~~~~~~~~~~v--~~i~~sp~~~~~~~la~g~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~   83 (339)
                      .+.+.+|.|....  ..+.|+ +   +.++.+.+    .+|  .|+.  ++.++++...  ..  .-..........+++
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~-~---~~LyestG----~~g~S~v~~--vD~~Tgkv~~--~~--~l~~~~FgeGit~~g   96 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYR-N---GYFYESTG----LNGRSSIRK--VDIESGKTLQ--QI--ELGKRYFGEGISDWK   96 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEE-T---TEEEEEEE----ETTEEEEEE--ECTTTCCEEE--EE--ECCTTCCEEEEEEET
T ss_pred             eEEEEEecCCCCcccceEEEE-C---CEEEEECC----CCCCceEEE--EECCCCcEEE--EE--ecCCccceeEEEEeC
Confidence            3556677776554  678888 6   65555554    344  7888  6666666665  22  223344443333344


Q ss_pred             CCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           84 ETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                      .    ++.+... + .+.+||.++.+  .+.++....      .=..+++   +++.|+.+..++.|.++|..+.+.+..
T Consensus        97 ~----~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~~------eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A           97 D----KIVGLTWKNGLGFVWNIRNLR--QVRSFNYDG------EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRT  161 (262)
T ss_dssp             T----EEEEEESSSSEEEEEETTTCC--EEEEEECSS------CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred             C----EEEEEEeeCCEEEEEECccCc--EEEEEECCC------CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence            2    4555543 3 99999999887  666666422      1124443   556666666688999999999887777


Q ss_pred             eecc--C---CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---------CCCCCeEEEEEecCCCCeEE
Q 040307          162 LVAH--D---REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP---------VQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       162 ~~~~--~---~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~p~~~~~l~  227 (339)
                      +...  .   ..++.+.|.++.+++..-.+..|.+.|.++++....+....         ....-.+.|+|+| +++.|+
T Consensus       162 I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lf  240 (262)
T 3nol_A          162 ITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLF  240 (262)
T ss_dssp             EECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEE
T ss_pred             EEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEE
Confidence            6432  1   23456788777777766678899999999998655543320         1123568999999 555555


Q ss_pred             EEeeC
Q 040307          228 TVGMD  232 (339)
Q Consensus       228 ~~~~d  232 (339)
                      +.+..
T Consensus       241 VTGK~  245 (262)
T 3nol_A          241 VTGKL  245 (262)
T ss_dssp             EEETT
T ss_pred             EECCC
Confidence            54444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.95  E-value=4e-06  Score=70.28  Aligned_cols=199  Identities=11%  Similarity=-0.021  Sum_probs=122.0

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      +...|.+..++.     .++.+....|+..+++...  ....+...      ..+..++|++.++.++.+-...+.|..+
T Consensus        34 d~~~C~~~~~~~-----~ll~~~~~~I~~i~~~g~~--~~~~~~~~------~~~~~l~~d~~~~~ly~~D~~~~~I~r~  100 (349)
T 3v64_C           34 DRRSCKALGPEP-----VLLFANRIDIRQVLPHRSE--YTLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRA  100 (349)
T ss_dssp             TSSCEEESSSCC-----EEEEECBSCEEEECTTSCC--EEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCcccccccCc-----eeEeecccceEEEeCCCCe--eEEeecCC------CceEEEEEeccccEEEEEeccCCceEEE
Confidence            344566655643     4444444488888887664  22223322      4578999997455555555567899999


Q ss_pred             ECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307          152 DIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                      ++........+.........+++.  .++++++-...+.|.+.++........ ...  .-.....++++|.++.++.+-
T Consensus       101 ~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~~~--~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          101 NLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQ--SLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             ETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECT--TCSCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-EeC--CCCCcceEEEecCcCeEEEec
Confidence            987655333332222345677776  466667766778999999876543322 222  235678999998555444444


Q ss_pred             eeC-CCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          230 GMD-SNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       230 ~~d-~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ... +. |..+++..  .....+. ..-...+.++++|++.++.++-...+.|..+++....
T Consensus       178 ~~~~~~-I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          178 WGNTPR-IEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             CSSSCE-EEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCCE-EEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence            333 44 88888764  2233332 2234578999999775455555566788888877544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.94  E-value=5.5e-07  Score=79.10  Aligned_cols=192  Identities=13%  Similarity=0.009  Sum_probs=130.1

Q ss_pred             eEEEEcC-----CCCCCCCCeEEEeCC--cEEEEeecCCcceeEE--EeecCCCccCCCCEEEEEE-c-CCCCCEEEEEe
Q 040307           75 TNIAFFP-----SEETLNPDIVATSGD--SLRLWEIHDDRTELKS--LLNSNKTSEFSSAITSFDW-A-GFDTRRVATCS  143 (339)
Q Consensus        75 ~~l~~~~-----~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~-~-~~~~~~l~~~~  143 (339)
                      .....|.     |++    .++++..+  .|.+.|+++.+  ...  .+...      .....+++ + | +++++++++
T Consensus        88 hh~~~s~t~g~~DG~----~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~g------~~phg~~~~~~p-~~~~v~~~~  154 (595)
T 1fwx_A           88 HHVHMSFTEGKYDGR----FLFMNDKANTRVARVRCDVMK--CDAILEIPNA------KGIHGLRPQKWP-RSNYVFCNG  154 (595)
T ss_dssp             CCEEEEEETTEEEEE----EEEEEETTTTEEEEEETTTTE--EEEEEECSSC------CSEEEEEECCSS-BCSEEEEEE
T ss_pred             CccccCCCCCCcCCC----EEEEEcCCCCEEEEEECCCce--EeeEEeCCCC------CCCcceeeeecC-CCcEEEEec
Confidence            3455555     772    34444443  89999999987  444  43322      35778887 4 6 888888885


Q ss_pred             ------------------CCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC-----------------
Q 040307          144 ------------------VDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC-----------------  187 (339)
Q Consensus       144 ------------------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-----------------  187 (339)
                                        .++.+.+.|..+.+...++.--. ....++.+ +++++++.+.+.                 
T Consensus       155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v  233 (595)
T 1fwx_A          155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  233 (595)
T ss_dssp             CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence                              24579999999988877775322 34566777 677777777543                 


Q ss_pred             ---------------------cEEEEECCC--Ccc-eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          188 ---------------------SVRVFDLRD--KER-STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       188 ---------------------~i~i~d~~~--~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                                           .|.+.|.++  ++. ...+...    ....++.++| +|+++++++.....|.++|+.+
T Consensus       234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg----~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~  308 (595)
T 1fwx_A          234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTR  308 (595)
T ss_dssp             EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE----SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGG
T ss_pred             EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC----CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcc
Confidence                                 477888877  333 2222222    3567899999 8888877765555599999985


Q ss_pred             CC-----------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          244 PT-----------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       244 ~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      ..           ....++. -......++|+|+| ...++.-.|+.|.+||+..
T Consensus       309 ~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          309 FDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             HHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            31           1122232 23467899999999 6777888999999999987

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.94  E-value=2.9e-06  Score=72.15  Aligned_cols=197  Identities=11%  Similarity=-0.019  Sum_probs=119.1

Q ss_pred             ceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307           74 PTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI  153 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~  153 (339)
                      -.|.+..+..     .++.+....|+..+++....  .......      .....++|++.++.++.+-...+.|..+++
T Consensus        79 ~~C~~~~~~~-----~l~~~~~~~I~~i~~~~~~~--~~~~~~~------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~  145 (386)
T 3v65_B           79 RSCKALGPEP-----VLLFANRIDIRQVLPHRSEY--TLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRANL  145 (386)
T ss_dssp             SCEEECSSCC-----EEEEECBSCEEEECTTSCCC--EEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CeECCccccc-----eeEeecCccceeeccCCCcE--EEEecCC------CccEEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            3455544433     34444334888888877652  2223222      467899999745555556566789999998


Q ss_pred             CCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307          154 DREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                      ........+.........+++.  .++++++-...+.|.+.++........ ...  .-.....++++|..+.++.+-..
T Consensus       146 ~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l-~~~--~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          146 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQ--SLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             TSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE-ECS--SCSCEEEEEEETTTTEEEEEECS
T ss_pred             CCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe-ecC--CCCCCcEEEEEcCCCeEEEeccC
Confidence            7665333333222344567776  456666666778898888876543222 222  23567899999844444444333


Q ss_pred             C-CCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          232 D-SNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       232 d-~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      . +. |..+++..  .....+. ..-...+.++|+|++.++.++-+..+.|..+++....
T Consensus       223 ~~~~-I~r~~~dG--~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (386)
T 3v65_B          223 NTPR-IEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  279 (386)
T ss_dssp             SSCE-EEEEETTS--CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred             CCCE-EEEEeCCC--CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence            3 34 88888764  2233332 2234578999998775455555566788888876544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=3.7e-07  Score=83.50  Aligned_cols=227  Identities=12%  Similarity=0.057  Sum_probs=134.7

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecC-CCccCCCCEE-EEEEcCCCCCEEEEEeC------CCeEEEEECCCCeee
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSN-KTSEFSSAIT-SFDWAGFDTRRVATCSV------DTTCVIWDIDREILE  159 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~i~-~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~  159 (339)
                      .+++...+ .|..+|..+++  .+-.+... ..... ..+. .....  + ..++.++.      ++.|+.+|.++++.+
T Consensus       130 ~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~-~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          130 KVYVGAWDGRLIALDAATGK--EVWHQNTFEGQKGS-LTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCC--EEEEEETTTTCCSS-CBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             EEEEEcCCCEEEEEECCCCC--EEeeecCCcCcCcC-cccccCcEEE--C-CEEEEEecccccCCCCEEEEEECCCCcEE
Confidence            45555545 99999999987  44444433 10000 0111 11111  3 34454443      799999999999987


Q ss_pred             eeeeccCCc--------------------------------eeEEEec-CCcEEEEEeCCC-------------------
Q 040307          160 TQLVAHDRE--------------------------------VYDISWG-GFNVFASVSGDC-------------------  187 (339)
Q Consensus       160 ~~~~~~~~~--------------------------------v~~~~~~-~~~~l~~~~~d~-------------------  187 (339)
                      ..+......                                ...++++ .+++++.+..++                   
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            766432111                                1245666 567777776653                   


Q ss_pred             cEEEEECCCCcceeeEEeCCCCC-------CCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEEecCC--
Q 040307          188 SVRVFDLRDKERSTIIYENPVQD-------CPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE--  255 (339)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~--  255 (339)
                      .|..+|.++++..=..... .+.       ....-+.... +|   ..++.++.++. ++++|.++ ++++.......  
T Consensus       284 sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~-l~~lD~~t-G~~l~~~~~~~~~  359 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGF-FFVLDRTN-GKFISAKNFVPVN  359 (677)
T ss_dssp             EEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTT-CCEEEEEESSCCS
T ss_pred             EEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCE-EEEEECCC-CCEeccccccccC
Confidence            4999999988744333222 111       1222233333 55   67888888888 99999987 55555443211  


Q ss_pred             ---------CCe------------------------eEEEeccCCCCeEEEEeCC-------------------------
Q 040307          256 ---------GSV------------------------NGISWAPLYGRRLCSVADD-------------------------  277 (339)
Q Consensus       256 ---------~~v------------------------~~~~~~p~~~~~l~~~~~d-------------------------  277 (339)
                               ..+                        ..++++|+.. ++++...+                         
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  438 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT  438 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeeccccccccccccccccccc
Confidence                     001                        2578899874 66665432                         


Q ss_pred             ------------------CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          278 ------------------SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       278 ------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                                        |.|..||+.+++             ..-...+..++....+...+..++.++.|+.+++|++
T Consensus       439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~-------------~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQK-------------AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             TCCCCEEECSSCCCSCCEEEEEEEETTTTE-------------EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccccccccccCCCCCccEEEEEeCCCCc-------------EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                              567778877766             3333334444555556667767778889999999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.91  E-value=1.1e-06  Score=68.49  Aligned_cols=197  Identities=9%  Similarity=0.034  Sum_probs=122.1

Q ss_pred             CCCceeeeeeccCC--eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307            6 EKKPGVHTYMAQWP--ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE   83 (339)
Q Consensus         6 ~~~~~~~~~~~~~~--v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~   83 (339)
                      .+.+.+.+|.|+..  ...+.|+++   .-+..+|..   ..+.|+.  ++..+++...  ..  .-..........+.+
T Consensus         7 ~~~~v~~~~phd~~~ftqGL~~~~~---~LyestG~~---g~S~v~~--vD~~tgkv~~--~~--~l~~~~fgeGi~~~~   74 (243)
T 3mbr_X            7 QGYRVVKRYPHDTTAFTEGLFYLRG---HLYESTGET---GRSSVRK--VDLETGRILQ--RA--EVPPPYFGAGIVAWR   74 (243)
T ss_dssp             CCEEEEEEEECCTTCCEEEEEEETT---EEEEEECCT---TSCEEEE--EETTTCCEEE--EE--ECCTTCCEEEEEEET
T ss_pred             cceEEEEEcCCCCccccccEEEECC---EEEEECCCC---CCceEEE--EECCCCCEEE--EE--eCCCCcceeEEEEeC
Confidence            34567778888654  448888765   333333331   2358999  4555566554  22  223333333333334


Q ss_pred             CCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307           84 ETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ  161 (339)
Q Consensus        84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  161 (339)
                      .    ++.+... + .+.+||.++.+  .+.++....     . =..+++   +++.|+.+..++.|.++|..+.+.+..
T Consensus        75 ~----~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~~-----~-Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~  139 (243)
T 3mbr_X           75 D----RLIQLTWRNHEGFVYDLATLT--PRARFRYPG-----E-GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGS  139 (243)
T ss_dssp             T----EEEEEESSSSEEEEEETTTTE--EEEEEECSS-----C-CCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred             C----EEEEEEeeCCEEEEEECCcCc--EEEEEeCCC-----C-ceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence            2    4555553 3 99999998887  666666432     1 235554   456666666789999999999887777


Q ss_pred             eeccC-----CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC----------CCCCCeEEEEEecCCCCeE
Q 040307          162 LVAHD-----REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP----------VQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       162 ~~~~~-----~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~~l  226 (339)
                      +.-..     ..++.+.|.++.+++..-.+..|.+.|.++++....+....          ....-.+.|+++|..++++
T Consensus       140 I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf  219 (243)
T 3mbr_X          140 IKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF  219 (243)
T ss_dssp             EECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred             EEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence            65321     34567787777777776678899999999998655543220          1223568999999444444


Q ss_pred             EEE
Q 040307          227 ATV  229 (339)
Q Consensus       227 ~~~  229 (339)
                      ++|
T Consensus       220 VTG  222 (243)
T 3mbr_X          220 VTG  222 (243)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.91  E-value=2.3e-06  Score=72.53  Aligned_cols=227  Identities=9%  Similarity=0.008  Sum_probs=127.5

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--------CCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEe
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--------PYTPTNIAFFPSEETLNPDIVATSGD-SLRLWE  102 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--------~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~  102 (339)
                      +..+.+++    .++.|..++.  .+++..-  ......        ...+.+.-...++     .+++...+ .|..+|
T Consensus        53 ~~~v~~~~----~~g~v~a~d~--~tG~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~~~~g~l~a~d  119 (376)
T 3q7m_A           53 DNVVYAAD----RAGLVKALNA--DDGKEIW--SVSLAEKDGWFSKEPALLSGGVTVSGG-----HVYIGSEKAQVYALN  119 (376)
T ss_dssp             TTEEEEEC----TTSEEEEEET--TTCCEEE--EEECCC---CCSCCCCCEEEEEEEETT-----EEEEEETTSEEEEEE
T ss_pred             CCEEEEEc----CCCeEEEEEc--cCCceee--eecCccccccccccCcccccCceEeCC-----EEEEEcCCCEEEEEE
Confidence            44666666    5788888554  4444332  111111        2223222222344     56665555 899999


Q ss_pred             ecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce-----eEEEecCC
Q 040307          103 IHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV-----YDISWGGF  177 (339)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~  177 (339)
                      .++++  .........     ........   .+..++.++.++.|..+|.++++.+..+.......     ...... +
T Consensus       120 ~~tG~--~~W~~~~~~-----~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~  188 (376)
T 3q7m_A          120 TSDGT--VAWQTKVAG-----EALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F  188 (376)
T ss_dssp             TTTCC--EEEEEECSS-----CCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred             CCCCC--EEEEEeCCC-----ceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence            99887  333333321     11111122   23577788889999999999998777765332111     111222 4


Q ss_pred             cEEEEEeCCCcEEEEECCCCcceeeEEeCCC-CCCCeEE---EEEec-CCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          178 NVFASVSGDCSVRVFDLRDKERSTIIYENPV-QDCPLLR---LEWNK-ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~---~~~~p-~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      ..++.+..++.+..+|..+++..-....... ....+..   +.-.| ..+..+++++.++. +..+|.++ ++.+....
T Consensus       189 ~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~t-G~~~w~~~  266 (376)
T 3q7m_A          189 GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRS-GQIMWKRE  266 (376)
T ss_dssp             TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTT-CCEEEEEC
T ss_pred             CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCC-CcEEeecc
Confidence            5677788899999999988874333221100 0000000   10111 02456777777888 99999987 44444443


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .  .....+..  ++ ..++.++.++.|..+|..+++
T Consensus       267 ~--~~~~~~~~--~~-~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          267 L--GSVNDFIV--DG-NRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             C--CCEEEEEE--ET-TEEEEEETTCCEEEEETTTCC
T ss_pred             C--CCCCCceE--EC-CEEEEEcCCCeEEEEECCCCc
Confidence            2  23444443  34 377788889999999998877

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.90  E-value=3.3e-06  Score=69.47  Aligned_cols=233  Identities=10%  Similarity=0.031  Sum_probs=134.8

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL   86 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~   86 (339)
                      +.+.+..+........++|+|+   ++++++-.    .++.|..  ++.++....   .  ......+..+++.+++   
T Consensus        21 ~~~~~~~~p~~~~pegia~~~~---g~lyv~d~----~~~~I~~--~d~~g~~~~---~--~~~~~~p~gia~~~dG---   83 (306)
T 2p4o_A           21 PAKIITSFPVNTFLENLASAPD---GTIFVTNH----EVGEIVS--ITPDGNQQI---H--ATVEGKVSGLAFTSNG---   83 (306)
T ss_dssp             CEEEEEEECTTCCEEEEEECTT---SCEEEEET----TTTEEEE--ECTTCCEEE---E--EECSSEEEEEEECTTS---
T ss_pred             CceEeEeCCCCCCcceEEECCC---CCEEEEeC----CCCeEEE--ECCCCceEE---E--EeCCCCceeEEEcCCC---
Confidence            3455666655567889999999   88666654    5788877  554443222   1  2334578999999999   


Q ss_pred             CCCeEEEeC--Cc--EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eee
Q 040307           87 NPDIVATSG--DS--LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQ  161 (339)
Q Consensus        87 ~~~~la~~~--~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~  161 (339)
                        +++++..  +.  |..++..+++...+..+...      .....++..+ ++..+++-..++.|+.+|...++. +..
T Consensus        84 --~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~------~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~  154 (306)
T 2p4o_A           84 --DLVATGWNADSIPVVSLVKSDGTVETLLTLPDA------IFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWL  154 (306)
T ss_dssp             --CEEEEEECTTSCEEEEEECTTSCEEEEEECTTC------SCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             --cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc------cccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEE
Confidence              7776653  24  55566666653322222111      2234555443 444455544688999999875431 110


Q ss_pred             ee---------ccCCceeEEEec-CC-cEEEEEeCCCcEEEEECCC-Ccc--eeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          162 LV---------AHDREVYDISWG-GF-NVFASVSGDCSVRVFDLRD-KER--STIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       162 ~~---------~~~~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      ..         ..-.....+  + ++ .++++-...+.|..||+.. +..  ...+...    .....+++++ +|++++
T Consensus       155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~-dG~l~v  227 (306)
T 2p4o_A          155 EHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDV-EGNLYG  227 (306)
T ss_dssp             ECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBT-TCCEEE
T ss_pred             ECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECC-CCCEEE
Confidence            00         111233455  4 44 4555666678999999875 221  1111111    2456688887 787766


Q ss_pred             EEeeCCCeEEEEecCCCCCceE--EEecCCCCeeEEEec---cCCCCeEEEEeC
Q 040307          228 TVGMDSNKVVVLDIRFPTNPVV--VLSKHEGSVNGISWA---PLYGRRLCSVAD  276 (339)
Q Consensus       228 ~~~~d~~~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~---p~~~~~l~~~~~  276 (339)
                      +....+. |.++|..  ++...  .+........+++|.   |++. .|+.++.
T Consensus       228 a~~~~~~-V~~~~~~--G~~~~~~~~~~~~~~p~~~a~~g~~~d~~-~LyVt~~  277 (306)
T 2p4o_A          228 ATHIYNS-VVRIAPD--RSTTIIAQAEQGVIGSTAVAFGQTEGDCT-AIYVVTN  277 (306)
T ss_dssp             ECBTTCC-EEEECTT--CCEEEEECGGGTCTTEEEEEECCSTTTTT-EEEEEEC
T ss_pred             EeCCCCe-EEEECCC--CCEEEEeecccccCCceEEEEecccCCCC-EEEEECC
Confidence            5555566 9999864  33322  222223568899998   8874 5554443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.89  E-value=9.6e-06  Score=66.96  Aligned_cols=187  Identities=14%  Similarity=0.048  Sum_probs=114.1

Q ss_pred             CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC----Ceeeeeeec
Q 040307           89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR----EILETQLVA  164 (339)
Q Consensus        89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~----~~~~~~~~~  164 (339)
                      .+|.+....|+..+++..+.  ...+...      ....+++|++.++.++.+-...+.|..+++..    ......+..
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~--~~~~~~~------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEY--TSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCC--EEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCcce--EehhcCC------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence            44555555899999988762  2233322      46789999974445555555678999999875    222222222


Q ss_pred             cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEec
Q 040307          165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDI  241 (339)
Q Consensus       165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~  241 (339)
                      .-.....+++.  .++++++-...+.|.++|+....... +...  .......++++|..+.++.+.... +. |..+++
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~  150 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT-LFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL  150 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE-EEEC--TTCCEEEEEEETTTTEEEEEECSSSCE-EEEEET
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE-EEEC--CCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcC
Confidence            22345778886  35566666678899999987654332 2322  234678999998444444443332 44 888887


Q ss_pred             CCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          242 RFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       242 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..  .....+. ..-...+.++++|++.++.++-+..+.|..+|+....
T Consensus       151 dG--~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~  197 (316)
T 1ijq_A          151 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (316)
T ss_dssp             TS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CC--CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc
Confidence            53  3333332 2234678999999875455555566789999987544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.89  E-value=3.6e-07  Score=71.88  Aligned_cols=185  Identities=15%  Similarity=0.173  Sum_probs=119.4

Q ss_pred             ecCCCCc--eEEEEcCCCCCCCCCeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCE--EEEEEcCCCCCEE
Q 040307           68 FDHPYTP--TNIAFFPSEETLNPDIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAI--TSFDWAGFDTRRV  139 (339)
Q Consensus        68 ~~~~~~v--~~l~~~~~~~~~~~~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~l  139 (339)
                      +.|....  ..|.|+ ++     .++.+.+.    .|+++|+++++  .+..+....      ..  ..++..  .+.+.
T Consensus        37 ~phd~~~ftqGL~~~-~~-----~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~------~~FgeGit~~--g~~ly  100 (262)
T 3nol_A           37 YPHDTKAFTEGFFYR-NG-----YFYESTGLNGRSSIRKVDIESGK--TLQQIELGK------RYFGEGISDW--KDKIV  100 (262)
T ss_dssp             EECCTTCEEEEEEEE-TT-----EEEEEEEETTEEEEEEECTTTCC--EEEEEECCT------TCCEEEEEEE--TTEEE
T ss_pred             ecCCCCcccceEEEE-CC-----EEEEECCCCCCceEEEEECCCCc--EEEEEecCC------ccceeEEEEe--CCEEE
Confidence            4565544  889998 56     67766652    89999999998  444443321      22  235553  44555


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEE
Q 040307          140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLE  217 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~  217 (339)
                      +..-.++.+.++|.++.+.+.++.... .-..+++ ++..|+.+..++.|.++|..+.+....+....  ..-..++.+.
T Consensus       101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe  178 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE  178 (262)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred             EEEeeCCEEEEEECccCcEEEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence            556678999999999999988886432 2234554 45555555567889999999887555543321  0113455677


Q ss_pred             EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC------------CCCeeEEEeccCCCCeEEEE
Q 040307          218 WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH------------EGSVNGISWAPLYGRRLCSV  274 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~~l~~~  274 (339)
                      |.  +|++.+..-.++. |.+.|.++ ++.+..+...            ..-.+.|+|+|++.++++||
T Consensus       179 ~~--~G~lyan~w~~~~-I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          179 WV--DGEIFANVWQTNK-IVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EE--TTEEEEEETTSSE-EEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EE--CCEEEEEEccCCe-EEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            76  6665554444555 99999987 5555555431            13568999999985455554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.88  E-value=2.4e-06  Score=66.60  Aligned_cols=188  Identities=13%  Similarity=0.148  Sum_probs=121.3

Q ss_pred             ecCC--CCceEEEEcCCCCCCCCCeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307           68 FDHP--YTPTNIAFFPSEETLNPDIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT  141 (339)
Q Consensus        68 ~~~~--~~v~~l~~~~~~~~~~~~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  141 (339)
                      ++|.  .-...|.|++ +     .++.+.+.    .|+.+|+++++  ..........    .--..++..  ++.+...
T Consensus        15 ~phd~~~ftqGL~~~~-~-----~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~----~fgeGi~~~--~~~ly~l   80 (243)
T 3mbr_X           15 YPHDTTAFTEGLFYLR-G-----HLYESTGETGRSSVRKVDLETGR--ILQRAEVPPP----YFGAGIVAW--RDRLIQL   80 (243)
T ss_dssp             EECCTTCCEEEEEEET-T-----EEEEEECCTTSCEEEEEETTTCC--EEEEEECCTT----CCEEEEEEE--TTEEEEE
T ss_pred             cCCCCccccccEEEEC-C-----EEEEECCCCCCceEEEEECCCCC--EEEEEeCCCC----cceeEEEEe--CCEEEEE
Confidence            4554  4467999987 4     56666653    89999999998  4444432210    111244544  4566666


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC--CCCCeEEEEEe
Q 040307          142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPV--QDCPLLRLEWN  219 (339)
Q Consensus       142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~  219 (339)
                      ...++.+.++|.++.+.+.++.... .-..+++. +..|+.+..++.|.++|..+.+....+.....  .-..++.+.|.
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~  158 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFRYPG-EGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV  158 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEECSS-CCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             EeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence            6779999999999999998886433 33566654 55555556688999999999875554433211  11345667775


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------------CCCeeEEEeccCCCCeEEEEe
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------------EGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~~~~  275 (339)
                        ++++.+..-.+.. |.+.|.++ ++.+..+...             ..-.+.|+++|++.++++||-
T Consensus       159 --~G~lyanvw~s~~-I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          159 --NGELLANVWLTSR-IARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             --TTEEEEEETTTTE-EEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             --CCEEEEEECCCCe-EEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence              6665555444555 99999987 5555554421             135689999999865555553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=5.9e-07  Score=70.66  Aligned_cols=181  Identities=7%  Similarity=-0.095  Sum_probs=121.6

Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee--EEEecCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307          125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY--DISWGGFNVFASVSGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  202 (339)
                      -...+.|+  ++.++.+.+.+|.|+++|+++++.+..+ -. ....  .+++.++.+++..-.++.+.+||..+.+....
T Consensus        56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            34688887  5788888899999999999999987776 22 2333  36666566666777889999999999886666


Q ss_pred             EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--CCC---CeeEEEeccCCCCeEEEEeCC
Q 040307          203 IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--HEG---SVNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~---~v~~~~~~p~~~~~l~~~~~d  277 (339)
                      +...    ..-..+++   +++.|+.+..++. |.++|..+ .+.+.++..  +..   .++.+.|. +| ++.+..-.+
T Consensus       132 i~~~----~eGwGLt~---Dg~~L~vSdGs~~-l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s  200 (268)
T 3nok_A          132 TRYS----GEGWGLCY---WNGKLVRSDGGTM-LTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHS  200 (268)
T ss_dssp             EECS----SCCCCEEE---ETTEEEEECSSSE-EEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTC
T ss_pred             EeCC----CceeEEec---CCCEEEEECCCCE-EEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCC
Confidence            5443    12234443   4566666555665 99999887 455555543  222   45667777 66 466555567


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCcccceeee-----------cccceeEEEEecCCCCceEEEec
Q 040307          278 SRALIWEVVGPGYRSGNGGPSGDVEPELCY-----------QSMAEINVVRWSPLELDWIAIAF  330 (339)
Q Consensus       278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~p~~~~l~~~~~  330 (339)
                      +.|.+.|..+++          .+..+...           ......+.|+|+|++..|+.++.
T Consensus       201 ~~I~vIDp~TG~----------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          201 SDVLEIDPATGT----------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             SEEEEECTTTCB----------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CeEEEEeCCCCc----------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            899999998877          11111110           11235789999998877776663

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.86  E-value=2.9e-05  Score=72.60  Aligned_cols=278  Identities=10%  Similarity=-0.015  Sum_probs=163.5

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cE
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SL   98 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i   98 (339)
                      |.++...++   +.+.+ |+    .++.|..|+  ..+..+...  ........|.++...+++     .+.+...+ .+
T Consensus       175 i~~i~~d~~---g~lwi-gt----~~~Gl~~~~--~~~~~~~~~--~~~~~~~~i~~i~~d~~g-----~lwigt~~~Gl  237 (795)
T 4a2l_A          175 IASTLYRQG---DQIYI-GT----STDGLYTYS--ITQKTFEKV--IPILGTKQIQAILQQSPT-----RIWVATEGAGL  237 (795)
T ss_dssp             CEEEEEEET---TEEEE-EE----SSSCEEEEE--TTTCCEEEC--C----CCCEEEEEEEETT-----EEEEEEBSSCE
T ss_pred             eEEEEECCC---CCEEE-EE----CCCCEEEEe--CCCCeEEEe--cCCCCCCeeEEEEEcCCC-----CEEEEECCCCe
Confidence            777777777   76554 55    345677744  333333321  011235678889888888     67666544 88


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-------ccCCceeE
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-------AHDREVYD  171 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-------~~~~~v~~  171 (339)
                      .+|+..+++......-......-....|.++...+ ++.+. .|+.+ -|.+||..+++......       -....|.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~  314 (795)
T 4a2l_A          238 FLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRS  314 (795)
T ss_dssp             EEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred             EEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence            89998776422211100000001125699998875 65544 44555 68899987765332211       12356888


Q ss_pred             EEecCCcEEEEEeCCCcEEEEECCCCcceeeEEe---CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          172 ISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYE---NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       172 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      +...+...|..|+.++-|..|+............   .......|.++...+ ++. |-+|+.+++ |..||... .. .
T Consensus       315 i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~G-l~~~~~~~-~~-~  389 (795)
T 4a2l_A          315 IFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGG-LNLYNPIT-QR-F  389 (795)
T ss_dssp             EEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSC-EEEECTTT-CC-E
T ss_pred             EEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCC-eEEEcCCC-Cc-E
Confidence            8888444456677777899998765542211110   011235688888875 554 556777777 99999765 22 2


Q ss_pred             EEEe---------cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-----cccceeE
Q 040307          249 VVLS---------KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-----QSMAEIN  314 (339)
Q Consensus       249 ~~~~---------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~  314 (339)
                      ..+.         .....|.++...+++ .+|..|+.++-|..||.....             .....     .....|.
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~-------------~~~~~~~~~~l~~~~v~  455 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ-------------VENFNQRNSQLVNENVY  455 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC-------------EEEECTTTSCCSCSCEE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc-------------EEEeecCCCCcCCCeeE
Confidence            2222         123578899988887 447778877789999887655             11111     1245688


Q ss_pred             EEEecCCCCceEEEecCCeEEEEe
Q 040307          315 VVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       315 ~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ++...+++..++++ . +.|.+|+
T Consensus       456 ~i~~d~~g~lwigt-~-~Gl~~~~  477 (795)
T 4a2l_A          456 AILPDGEGNLWLGT-L-SALVRFN  477 (795)
T ss_dssp             EEEECSSSCEEEEE-S-SCEEEEE
T ss_pred             EEEECCCCCEEEEe-c-CceeEEe
Confidence            99988888744444 4 4455554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.85  E-value=1.5e-06  Score=79.60  Aligned_cols=151  Identities=11%  Similarity=0.053  Sum_probs=85.2

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecC--CCccCCCCEE-EEEEcCCCCCEEEEEe-----CCCeEEEEECCCCeee
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSN--KTSEFSSAIT-SFDWAGFDTRRVATCS-----VDTTCVIWDIDREILE  159 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~i~-~~~~~~~~~~~l~~~~-----~d~~v~i~d~~~~~~~  159 (339)
                      .+++.+.+ .|..+|..+++  .+-.+...  ....  ..+. .-.+.  ++..++..+     .+|.|+.||.++++.+
T Consensus       123 ~v~v~~~dg~l~AlDa~TG~--~~W~~~~~~~~~~~--~~~~~sP~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          123 KVYVGVLDGRLEAIDAKTGQ--RAWSVDTRADHKRS--YTITGAPRVV--NGKVVIGNGGAEFGVRGYVTAYDAETGKEA  196 (689)
T ss_dssp             EEEEECTTSEEEEEETTTCC--EEEEEECCSCTTSC--CBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             EEEEEccCCEEEEEECCCCC--EeeeecCcCCCCCC--ccccCCcEEE--CCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence            44444446 99999999987  44333321  1000  0110 00111  344433322     3789999999999987


Q ss_pred             eeeeccC-------------------------------CceeEEEec-CCcEEEEEeCCCc-------------------
Q 040307          160 TQLVAHD-------------------------------REVYDISWG-GFNVFASVSGDCS-------------------  188 (339)
Q Consensus       160 ~~~~~~~-------------------------------~~v~~~~~~-~~~~l~~~~~d~~-------------------  188 (339)
                      ..+....                               .....++++ ..++++.+..++.                   
T Consensus       197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            7664210                               001246666 4678888877753                   


Q ss_pred             EEEEECCCCcceeeEEeCCC------CCCCeEEEEEecCCCC---eEEEEeeCCCeEEEEecCCCCCce
Q 040307          189 VRVFDLRDKERSTIIYENPV------QDCPLLRLEWNKADPR---FMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       189 i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~---~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      |..+|.++++..=.....++      ...++....... +++   .++.++.+|. ++++|.++ ++++
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~t-G~~l  342 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGF-FYVIDRAT-GELL  342 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTT-CCEE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCe-EEEEECCC-CCEe
Confidence            99999999884433322211      011222222222 444   7888888888 99999987 5544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.84  E-value=6e-06  Score=64.97  Aligned_cols=189  Identities=8%  Similarity=-0.022  Sum_probs=121.4

Q ss_pred             ceeeeeeccCCe--eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceE--EEEcCCCC
Q 040307            9 PGVHTYMAQWPI--STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTN--IAFFPSEE   84 (339)
Q Consensus         9 ~~~~~~~~~~~v--~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~   84 (339)
                      +.+.++.|....  ..+.|+.    +.++.+.+    .+|.|++  ++.++++...  .. .  ......  +++.  +.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~----~~Ly~stG----~~g~v~~--iD~~Tgkv~~--~~-l--~~~~FgeGit~~--g~  106 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ----GHFFESTG----HQGTLRQ--LSLESAQPVW--ME-R--LGNIFAEGLASD--GE  106 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET----TEEEEEET----TTTEEEE--CCSSCSSCSE--EE-E--CTTCCEEEEEEC--SS
T ss_pred             EEEEEEcCCCccccceEEEEC----CEEEEEcC----CCCEEEE--EECCCCcEEe--EE-C--CCCcceeEEEEe--CC
Confidence            456677776544  5777763    34444444    5788888  6676777665  22 2  233433  5554  42


Q ss_pred             CCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307           85 TLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL  162 (339)
Q Consensus        85 ~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  162 (339)
                          ++.+... + .+.+||.++.+  .+.++....      .-..+++   +++.|+.+..++.|.++|.++.+.+..+
T Consensus       107 ----~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~~------eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I  171 (268)
T 3nok_A          107 ----RLYQLTWTEGLLFTWSGMPPQ--RERTTRYSG------EGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAV  171 (268)
T ss_dssp             ----CEEEEESSSCEEEEEETTTTE--EEEEEECSS------CCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             ----EEEEEEccCCEEEEEECCcCc--EEEEEeCCC------ceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEE
Confidence                4555553 3 99999999887  666666422      2234554   5566766667899999999999877776


Q ss_pred             ec--cC---CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC----------CCCCCCeEEEEEecCCCCeEE
Q 040307          163 VA--HD---REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN----------PVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       163 ~~--~~---~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      ..  +.   ..++.+.|.++.+++..-.+..|.+.|.++++....+...          .....-.+.|+|+|...++++
T Consensus       172 ~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV  251 (268)
T 3nok_A          172 QVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM  251 (268)
T ss_dssp             ECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred             EeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence            43  22   2456778887877766667889999999999865544321          112245789999995555555


Q ss_pred             EE
Q 040307          228 TV  229 (339)
Q Consensus       228 ~~  229 (339)
                      +|
T Consensus       252 TG  253 (268)
T 3nok_A          252 TG  253 (268)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.82  E-value=2.8e-05  Score=63.83  Aligned_cols=227  Identities=9%  Similarity=-0.012  Sum_probs=132.1

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--C
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--T  146 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~  146 (339)
                      ......++|++++     .++++.. + .|..|+.+..   ....+.. .     .....+++.+ +++++++....  .
T Consensus        31 ~~~pegia~~~~g-----~lyv~d~~~~~I~~~d~~g~---~~~~~~~-~-----~~p~gia~~~-dG~l~vad~~~~~~   95 (306)
T 2p4o_A           31 NTFLENLASAPDG-----TIFVTNHEVGEIVSITPDGN---QQIHATV-E-----GKVSGLAFTS-NGDLVATGWNADSI   95 (306)
T ss_dssp             TCCEEEEEECTTS-----CEEEEETTTTEEEEECTTCC---EEEEEEC-S-----SEEEEEEECT-TSCEEEEEECTTSC
T ss_pred             CCCcceEEECCCC-----CEEEEeCCCCeEEEECCCCc---eEEEEeC-C-----CCceeEEEcC-CCcEEEEeccCCcc
Confidence            3567899999998     7877764 3 8888887653   2222222 1     4678999997 78866655432  2


Q ss_pred             eEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-------eCCCCCCCeEEEE
Q 040307          147 TCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-------ENPVQDCPLLRLE  217 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~~~  217 (339)
                      .|..+|..+++...... ........++.. ++..+++-..++.|..+|...........       .....-.....+ 
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            47777877776432221 111223444444 44445554468889999987542111100       000111234555 


Q ss_pred             EecCCCCeEEEEeeCCCeEEEEecCCCCCc--eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307          218 WNKADPRFMATVGMDSNKVVVLDIRFPTNP--VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG  295 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  295 (339)
                       +| +++.|+++......|..||+...+..  ...+.. ......++++++| +++++....+.|.+++.. +.      
T Consensus       175 -s~-dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~------  243 (306)
T 2p4o_A          175 -KR-FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RS------  243 (306)
T ss_dssp             -EE-ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CC------
T ss_pred             -Cc-CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CC------
Confidence             76 66666665555445999998642211  122221 2346789999999 577776677899999864 33      


Q ss_pred             CCCCcccceeeec-ccceeEEEEec---CCCCceEEEe
Q 040307          296 GPSGDVEPELCYQ-SMAEINVVRWS---PLELDWIAIA  329 (339)
Q Consensus       296 ~~~~~~~~~~~~~-~~~~i~~~~~~---p~~~~l~~~~  329 (339)
                           ........ .....++++|.   |++..|+.+.
T Consensus       244 -----~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          244 -----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             -----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             -----EEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence                 01111111 23568899998   8877766554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=7.2e-06  Score=67.91  Aligned_cols=244  Identities=7%  Similarity=-0.078  Sum_probs=142.1

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe----------------ecCCCCceEEEEcC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI----------------FDHPYTPTNIAFFP   81 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----------------~~~~~~v~~l~~~~   81 (339)
                      ....+++|.++   +.++.++.    .++.|..|  +..+..+.......                ......+..+++.+
T Consensus        19 ~~p~~i~~d~~---g~~l~v~~----~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           19 YAPNSFTFDST---NKGFYTSV----QDGRVIKY--EGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             SCCCCEECCTT---CSSEEEEC----TTSEEEEE--CCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred             CCceEEEEcCC---CCEEEEEc----CCCeEEEE--CCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence            35778899999   88777777    58888885  44443332100000                00113578999997


Q ss_pred             -CCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---------------
Q 040307           82 -SEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---------------  144 (339)
Q Consensus        82 -~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------  144 (339)
                       ++     .++++... .+..++..+++.+.+......  .. ......+++.|.++++.++-..               
T Consensus        90 ~~g-----~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~--~~-~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           90 QNN-----QLYIVDCYYHLSVVGSEGGHATQLATSVDG--VP-FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             TTT-----EEEEEETTTEEEEECTTCEECEEEESEETT--EE-CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             CCC-----cEEEEECCCCEEEEeCCCCEEEEecccCCC--Cc-ccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence             66     67776554 688888765432222111110  00 1346789998525665555322               


Q ss_pred             --CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEE-eCCCcEEEEECCCCc--ceeeEEeCCCCCCCeEEEEE
Q 040307          145 --DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV-SGDCSVRVFDLRDKE--RSTIIYENPVQDCPLLRLEW  218 (339)
Q Consensus       145 --d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~  218 (339)
                        ++.|..+|..+++...... .......++++ +++.|..+ ...+.|..|++....  ....+...   .+ ...+++
T Consensus       162 ~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~  236 (322)
T 2fp8_A          162 DKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKR  236 (322)
T ss_dssp             CCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEE
Confidence              3678899987665432222 22345678999 66655444 566889999987532  11222222   23 778999


Q ss_pred             ecCCCCeEEEEee----------CCCeEEEEecCCCCCceEEEecCC----CCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          219 NKADPRFMATVGM----------DSNKVVVLDIRFPTNPVVVLSKHE----GSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       219 ~p~~~~~l~~~~~----------d~~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                      .+ +|++.++...          .+. |..+|..  ++.+..+....    ..+..+++ .++ +++++...++.|..++
T Consensus       237 d~-~G~l~va~~~~~~~~~~~~~~~~-v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          237 NA-DGHFWVSSSEELDGNMHGRVDPK-GIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILV  310 (322)
T ss_dssp             CT-TSCEEEEEEEETTSSTTSCEEEE-EEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEE
T ss_pred             CC-CCCEEEEecCcccccccCCCccE-EEEECCC--CCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCCceEEEe
Confidence            97 7776666544          344 7777764  55566565432    34666766 355 4666666778899998


Q ss_pred             ecCCC
Q 040307          285 VVGPG  289 (339)
Q Consensus       285 ~~~~~  289 (339)
                      +....
T Consensus       311 ~~~~~  315 (322)
T 2fp8_A          311 YDKKG  315 (322)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            87554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=1.3e-05  Score=66.36  Aligned_cols=238  Identities=13%  Similarity=0.069  Sum_probs=132.2

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC------------CccCCCCEEEEEEcCCCCC
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK------------TSEFSSAITSFDWAGFDTR  137 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~  137 (339)
                      ....+++|.+++     .++.++. + .|..|+..+++...........            .........++++.+ +..
T Consensus        19 ~~p~~i~~d~~g-----~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g   92 (322)
T 2fp8_A           19 YAPNSFTFDSTN-----KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNN   92 (322)
T ss_dssp             SCCCCEECCTTC-----SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTT
T ss_pred             CCceEEEEcCCC-----CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCC
Confidence            346788999998     7555554 4 8888888765422211100000            000013578899985 334


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeec-----cCCceeEEEecC--CcEEEEEeC-----------------CCcEEEEE
Q 040307          138 RVATCSVDTTCVIWDIDREILETQLVA-----HDREVYDISWGG--FNVFASVSG-----------------DCSVRVFD  193 (339)
Q Consensus       138 ~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~l~~~~~-----------------d~~i~i~d  193 (339)
                      .|..+...+.|..+|..+++. ..+..     .......+++.+  ++++++-..                 ++.|..||
T Consensus        93 ~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           93 QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            555555556688888775542 22211     112467788874  455554322                 36688888


Q ss_pred             CCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeE
Q 040307          194 LRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRL  271 (339)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l  271 (339)
                      ..+++........    .....++++| +++.|+++.. .+. |..|++.... .....+....+ ...+++.++| ++.
T Consensus       172 ~~~~~~~~~~~~~----~~p~gia~~~-dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G-~l~  243 (322)
T 2fp8_A          172 PSTKETTLLLKEL----HVPGGAEVSA-DSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG-HFW  243 (322)
T ss_dssp             TTTTEEEEEEEEE----SCCCEEEECT-TSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-CEE
T ss_pred             CCCCEEEEeccCC----ccCcceEECC-CCCEEEEEeCCCCe-EEEEECCCCcCCccceEEeCCC-CCCeEECCCC-CEE
Confidence            7666532222221    2446799998 7776666544 455 9999987421 11222222223 7889999998 455


Q ss_pred             EEEeC----------CCcEEEEEecCCCCCCCCCCCCCcccceeeec-c----cceeEEEEecCCCCceEEEecCCeEEE
Q 040307          272 CSVAD----------DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-S----MAEINVVRWSPLELDWIAIAFVNKLQL  336 (339)
Q Consensus       272 ~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~~~~~p~~~~l~~~~~d~~v~~  336 (339)
                      ++...          .+.|..+|.. ++             ....+. .    ...++.+++ .++..+++...++.|..
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~~-G~-------------~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDEF-GN-------------ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI  308 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECTT-SC-------------EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE
T ss_pred             EEecCcccccccCCCccEEEEECCC-CC-------------EEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE
Confidence            55443          3556666653 22             222111 1    234667776 45554445557788887


Q ss_pred             EeC
Q 040307          337 LKV  339 (339)
Q Consensus       337 w~v  339 (339)
                      +++
T Consensus       309 ~~~  311 (322)
T 2fp8_A          309 LVY  311 (322)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.79  E-value=5e-05  Score=64.54  Aligned_cols=221  Identities=9%  Similarity=-0.016  Sum_probs=129.4

Q ss_pred             CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccC
Q 040307           45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEF  122 (339)
Q Consensus        45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~  122 (339)
                      .+.|+.  ++..+.....    .......+..++|.+.+.    .++.+-..  .|..++++...  ....+....    
T Consensus        95 ~~~I~~--i~~~~~~~~~----~~~~~~~~~gl~~d~~~~----~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~----  158 (386)
T 3v65_B           95 RIDIRQ--VLPHRSEYTL----LLNNLENAIALDFHHRRE----LVFWSDVTLDRILRANLNGSN--VEEVVSTGL----  158 (386)
T ss_dssp             BSCEEE--ECTTSCCCEE----EECSCSCEEEEEEETTTT----EEEEEETTTTEEEEEETTSCC--EEEEECSSC----
T ss_pred             Ccccee--eccCCCcEEE----EecCCCccEEEEEecCCC----eEEEEeCCCCcEEEEecCCCC--cEEEEeCCC----
Confidence            466777  4444444332    123345688999997652    55555443  88888887764  222222211    


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C-CcEEEEEeCC-CcEEEEECCCCcc
Q 040307          123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G-FNVFASVSGD-CSVRVFDLRDKER  199 (339)
Q Consensus       123 ~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d-~~i~i~d~~~~~~  199 (339)
                       .....+++.+..+.++++-...+.|.+.++........+...-.....+++. . +.++++-... +.|..+++.....
T Consensus       159 -~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          159 -ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             -SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             -CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence             2345778876455666666667889998886443322333333456888888 3 4444444444 6788888876543


Q ss_pred             eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307          200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR  279 (339)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  279 (339)
                      ... ...  .-.....++++| ++..|+.+......|..+|+.. ......+........++++. .+ .++++-...+.
T Consensus       238 ~~~-~~~--~~~~PnGlavd~-~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~  310 (386)
T 3v65_B          238 RII-ADT--HLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKS  310 (386)
T ss_dssp             EEE-ECS--SCSCEEEEEEEG-GGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTE
T ss_pred             EEE-EEC--CCCCeeeEEEeC-CCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCe
Confidence            332 222  234578999998 4455555444444499999864 22222333334456788883 33 46667667788


Q ss_pred             EEEEEecCCC
Q 040307          280 ALIWEVVGPG  289 (339)
Q Consensus       280 v~iwd~~~~~  289 (339)
                      |..++...+.
T Consensus       311 V~~~~~~~G~  320 (386)
T 3v65_B          311 INSANKFTGK  320 (386)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            8888744443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=6.7e-05  Score=62.81  Aligned_cols=239  Identities=10%  Similarity=-0.027  Sum_probs=138.3

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      +...|.+..++   + +|+.+.     .+.|+.  ++.++.....    .......+..++|.+...    .++.+-. .
T Consensus        34 d~~~C~~~~~~---~-~ll~~~-----~~~I~~--i~~~g~~~~~----~~~~~~~~~~l~~d~~~~----~ly~~D~~~   94 (349)
T 3v64_C           34 DRRSCKALGPE---P-VLLFAN-----RIDIRQ--VLPHRSEYTL----LLNNLENAIALDFHHRRE----LVFWSDVTL   94 (349)
T ss_dssp             TSSCEEESSSC---C-EEEEEC-----BSCEEE--ECTTSCCEEE----EECSCSCEEEEEEETTTT----EEEEEETTT
T ss_pred             CCCcccccccC---c-eeEeec-----ccceEE--EeCCCCeeEE----eecCCCceEEEEEecccc----EEEEEeccC
Confidence            44556555554   4 344444     456766  4554444432    123344588999997662    5555544 3


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                       .|..++++....  ...+....     .....+++.+.+++++++-...+.|.+.++........+...-.....++++
T Consensus        95 ~~I~r~~~~g~~~--~~~~~~~~-----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavd  167 (349)
T 3v64_C           95 DRILRANLNGSNV--EEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH  167 (349)
T ss_dssp             TEEEEEETTSCSC--EEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEE
T ss_pred             CceEEEecCCCCc--eEEEeCCC-----CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEe
Confidence             888888877642  22222211     3446788876455666666667899999986543222233333456889998


Q ss_pred             C--CcEEEEEeCC-CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          176 G--FNVFASVSGD-CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       176 ~--~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      +  +.++++-... +.|..+++......... ..  .-.....++++| ++..|+.+......|..+|+.. ......+.
T Consensus       168 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~--~~~~PnGla~d~-~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~  242 (349)
T 3v64_C          168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-DT--HLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDG-SHRKAVIS  242 (349)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCEESC-CS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CSCEEEEC
T ss_pred             cCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-EC--CCCCcceEEEeC-CCCEEEEEECCCCEEEEEeCCC-CceEEEEe
Confidence            3  4455555445 77888888765432221 11  234678999998 4555555444444499999864 22222233


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .......++++. .+ .++++-...+.|..++...++
T Consensus       243 ~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          243 QGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             SSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence            334456788883 33 466666667778777744433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.73  E-value=7e-05  Score=63.90  Aligned_cols=187  Identities=14%  Similarity=0.041  Sum_probs=114.5

Q ss_pred             CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----eeeeeeec
Q 040307           89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----ILETQLVA  164 (339)
Q Consensus        89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----~~~~~~~~  164 (339)
                      .++.+....|+..+++.....  ..+.. .     ..+..++|++.++.++.+-...+.|+.+++...    .....+..
T Consensus        85 ~ll~~~~~~I~~i~l~~~~~~--~~~~~-~-----~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~  156 (400)
T 3p5b_L           85 YLFFTNRHEVRKMTLDRSEYT--SLIPN-L-----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  156 (400)
T ss_dssp             EEEEEETTEEEEECTTSCSCE--EEECS-C-----SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS
T ss_pred             eeEEeccceeEEEccCCccee--Eeccc-c-----CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC
Confidence            344444458999998876532  22222 2     568899999744555555556788999998652    22222322


Q ss_pred             cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEec
Q 040307          165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDI  241 (339)
Q Consensus       165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~  241 (339)
                      .......+++.  .++++++-...+.|.+.++........+. .  .-.....++++|..+.++.+-.. .+. |...++
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~--~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~  232 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E--NGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL  232 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-C--SSCCEEEEEEETTTTEEEEEECSSSCC-EEEEET
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-C--CCCCcceEEEecccCeEEEEeCCCCCE-EEEEeC
Confidence            33456778877  46666666677899999988765333332 2  23457899999844444444322 245 888887


Q ss_pred             CCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          242 RFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       242 ~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..  .....+ ...-...+.|+++|++.++.++-...+.|..+|+....
T Consensus       233 dG--~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          233 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             TS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             CC--CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            64  223333 32335678999999875444444556788888886654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.72  E-value=4.6e-05  Score=60.22  Aligned_cols=200  Identities=12%  Similarity=0.088  Sum_probs=126.3

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA-HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..+..++|+|.++.++++...++.|...|.. ++.++.+.- -......|++. ++.++++.-.++.+.++++.......
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            6799999998445566678889999999997 777776632 12457788888 56655665567889999887655311


Q ss_pred             --eEEeC----CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC--CCCceEEEe-------cCCCCeeEEEeccC
Q 040307          202 --IIYEN----PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF--PTNPVVVLS-------KHEGSVNGISWAPL  266 (339)
Q Consensus       202 --~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~--~~~~~~~~~-------~~~~~v~~~~~~p~  266 (339)
                        .....    .......-.++|+| .++.|.++..... ..+|.+..  ....+..+.       .+...+.+++++|.
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p-~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNP-IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSS-EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCC-ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence              11111    12345578999999 5555555555544 44554431  111222221       12345789999998


Q ss_pred             CCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cc------cceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          267 YGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QS------MAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       267 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...+++.......+.++|....-           ....... +.      -.....|+|.|+|. ++.++.-+.+..++
T Consensus       184 tg~lliLS~~s~~L~~~d~~g~~-----------~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          184 KNTLLVLSHESRALQEVTLVGEV-----------IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             TTEEEEEETTTTEEEEECTTCCE-----------EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             CCeEEEEECCCCeEEEEcCCCCE-----------EEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            76677777777888888866432           0111111 11      13578999999996 66678877666553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.70  E-value=1.9e-05  Score=73.30  Aligned_cols=249  Identities=9%  Similarity=-0.011  Sum_probs=129.1

Q ss_pred             CeeEEEee-ecCCcccEEEEeeeccc-cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           19 PISTVAWS-VRHDRKSRLAVGSFLED-YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        19 ~v~~i~~s-p~~~~~~~la~g~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      .+...+|| ||   |++||.+....+ ....|++++++... +.... .+    ......+.|+||++    .++.+..+
T Consensus       175 ~~~~~~~S~PD---G~~lAy~~~~~G~~~~~l~v~dl~~g~-~~l~~-~~----~~~~~~~~WspDg~----~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPE---HDLVAFSVDMSGNEVYTIEFKRISDPS-QTIAD-KV----SGTNGEIVWGPDHT----SLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTT---TCEEEEEEESSSSSCEEEEEEETTCTT-CCCCC-CE----EEECSCCEECSSTT----EEEEEEEC
T ss_pred             EEeeeEecCCC---CCEEEEEEeCCCCceEEEEEEECCCCC-EeCCc-cc----cCceeeEEEecCCC----EEEEEEEC
Confidence            57789999 99   999998773111 11247776554430 32210 11    11245789999993    34444322


Q ss_pred             ------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCe-ee--eee-e
Q 040307           97 ------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREI-LE--TQL-V  163 (339)
Q Consensus        97 ------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~-~~--~~~-~  163 (339)
                            .|.++++.+++......+....    ......+.|+| ++++|+..+.   ...|.++|+.++. ..  ..+ .
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~----~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHN----PLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCC----TTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCC----CceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence                  5777777766422223332211    03356789998 8988877653   4468889987752 12  333 3


Q ss_pred             ccCCceeEEEecCCcEE-EEEeCC--C--cEEEEECCCCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eE
Q 040307          164 AHDREVYDISWGGFNVF-ASVSGD--C--SVRVFDLRDKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSN-KV  236 (339)
Q Consensus       164 ~~~~~v~~~~~~~~~~l-~~~~~d--~--~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i  236 (339)
                      .......++.|+.++.| +....+  +  .|..+|+.+...... +... .....+..+.+.  .+.++++...++. .|
T Consensus       317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~--~~~lv~~~~~~g~~~l  393 (751)
T 2xe4_A          317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVR--SNYLVVAGRRAGLTRI  393 (751)
T ss_dssp             CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred             CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence            34456677776645444 444443  2  566677664321122 2221 111234455553  4455566666664 36


Q ss_pred             EEEecC------CCCCceEEEecCC-CCeeEEEe----ccCCCCeEEEEeCC---CcEEEEEecCC
Q 040307          237 VVLDIR------FPTNPVVVLSKHE-GSVNGISW----APLYGRRLCSVADD---SRALIWEVVGP  288 (339)
Q Consensus       237 ~i~d~~------~~~~~~~~~~~~~-~~v~~~~~----~p~~~~~l~~~~~d---g~v~iwd~~~~  288 (339)
                      .++|+.      ..+.....+.... ..+..+.+    +++++.++++.+..   ..+..+|+..+
T Consensus       394 ~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~  459 (751)
T 2xe4_A          394 WTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH  459 (751)
T ss_dssp             EEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred             EEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            666751      2122134443211 22334433    34664565555533   34555665543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.67  E-value=6.2e-05  Score=62.07  Aligned_cols=187  Identities=9%  Similarity=0.005  Sum_probs=114.0

Q ss_pred             eEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee-eeeeccCC
Q 040307           90 IVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE-TQLVAHDR  167 (339)
Q Consensus        90 ~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~  167 (339)
                      +|+.+. ..|+..+++.........+.+.      .....++|++.++.++.+-...+.|..+++...... ..+...-.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGL------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEE------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCC------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence            444444 4999999987631122222221      356689999745556666566789999998765321 22222223


Q ss_pred             ceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee--CCCeEEEEecCC
Q 040307          168 EVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM--DSNKVVVLDIRF  243 (339)
Q Consensus       168 ~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d~~~i~i~d~~~  243 (339)
                      ....+++.  .++++++-...+.|.++++........ ...  .......++++|..+ .|+....  .+. |...++..
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~~~--~~~~P~giavdp~~g-~ly~td~~~~~~-I~r~~~dG  154 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-FWQ--ELDQPRAIALDPSSG-FMYWTDWGEVPK-IERAGMDG  154 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECS--SCSSEEEEEEEGGGT-EEEEEECSSSCE-EEEEETTS
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE-EeC--CCCCccEEEEeCCCC-EEEEEecCCCCE-EEEEEcCC
Confidence            45677776  466666666778999999876543222 222  235678999998444 4444442  344 88887753


Q ss_pred             CCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          244 PTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       244 ~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                        .....+. ..-...+.++++|++.++.++-+..+.|..+|+....
T Consensus       155 --~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~  199 (318)
T 3sov_A          155 --SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  199 (318)
T ss_dssp             --CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             --CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence              2233332 2234568999999775455555567789999887544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=0.00019  Score=67.01  Aligned_cols=283  Identities=9%  Similarity=-0.060  Sum_probs=155.8

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe----ecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI----FDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.++...++   +.+. +|+    .++.|..|+  .....+.......    .-....|.++...+++     .+.+..
T Consensus       164 ~i~~i~~d~~---g~lw-igt----~~~Gl~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lwigt  228 (781)
T 3v9f_A          164 QTWTATEAED---GKLY-IGH----VEGGLSILS--LNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG-----NIWIGT  228 (781)
T ss_dssp             CEEEEEEEET---TEEE-EEE----TTTEEEEEE--TTTTEEEEECC--------CCSSEEEEEECTTC-----CEEEEE
T ss_pred             ceEEEEECCC---CCEE-EEe----cCCCeEEEc--CCCCceEeeecCCCCcccCCCCceeEEEEcCCC-----CEEEEe
Confidence            4666666666   6544 455    354676644  4443332200000    0113568899888888     676665


Q ss_pred             CCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-----------
Q 040307           95 GDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-----------  163 (339)
Q Consensus        95 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-----------  163 (339)
                      .+-+.+|+..+.+..................|.++...+ ++ .|..|+..+-|.++|..+.+......           
T Consensus       229 ~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~  306 (781)
T 3v9f_A          229 SKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDN  306 (781)
T ss_dssp             TTEEEEEETTTTEEEC-----------CCCCEEEEEECT-TS-EEEEEESSSCEEEEETTCC---------CEEECBCSS
T ss_pred             CCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCC
Confidence            558888988766532221111000000115789998874 54 45556665678889987654221110           


Q ss_pred             ---ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEe------CCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307          164 ---AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYE------NPVQDCPLLRLEWNKADPRFMATVGMDSN  234 (339)
Q Consensus       164 ---~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~v~~~~~~p~~~~~l~~~~~d~~  234 (339)
                         .....|.++.......|-.|+.++-|..++............      .......|.++...+ ++. |.+|+.+++
T Consensus       307 ~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~G  384 (781)
T 3v9f_A          307 NYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGG  384 (781)
T ss_dssp             TTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSC
T ss_pred             CCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCc
Confidence               123568888887434456677677789999876553222111      111235688888864 444 556676777


Q ss_pred             eEEEEecCCCCCceEEE----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-ecc
Q 040307          235 KVVVLDIRFPTNPVVVL----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQS  309 (339)
Q Consensus       235 ~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~  309 (339)
                       |..||... .. ...+    ......|.++...+++  .|..|+.++.+..++..+..           ...... ...
T Consensus       385 -l~~~~~~~-~~-~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~-----------~~~~~~~~~~  448 (781)
T 3v9f_A          385 -INVFENGK-RV-AIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKK-----------FQIIELEKNE  448 (781)
T ss_dssp             -EEEEETTE-EE-EECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCE-----------EEECCSTTTC
T ss_pred             -EEEEECCC-Ce-EEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCc-----------EEEeccCCCC
Confidence             99999754 11 1111    1234578899988887  35557766778888776544           001100 112


Q ss_pred             cceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          310 MAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...|.++...+++..++ ++. +.|..|+
T Consensus       449 ~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~  475 (781)
T 3v9f_A          449 LLDVRVFYEDKNKKIWI-GTH-AGVFVID  475 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EET-TEEEEEE
T ss_pred             CCeEEEEEECCCCCEEE-EEC-CceEEEe
Confidence            45688888888876444 444 4565554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.62  E-value=6.8e-05  Score=59.24  Aligned_cols=198  Identities=7%  Similarity=0.083  Sum_probs=119.1

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      +-...+..++|+|++.    .++++..+  .|...|.. ++  ....+.-..   + ...-.+++.+ ++.++++.-.++
T Consensus        24 g~~~~lSGla~~~~~~----~L~aV~d~~~~I~~ld~~-g~--v~~~i~l~g---~-~D~EGIa~~~-~g~~~vs~E~~~   91 (255)
T 3qqz_A           24 GITNNISSLTWSAQSN----TLFSTINKPAAIVEMTTN-GD--LIRTIPLDF---V-KDLETIEYIG-DNQFVISDERDY   91 (255)
T ss_dssp             TCCSCEEEEEEETTTT----EEEEEEETTEEEEEEETT-CC--EEEEEECSS---C-SSEEEEEECS-TTEEEEEETTTT
T ss_pred             CcccCcceeEEeCCCC----EEEEEECCCCeEEEEeCC-CC--EEEEEecCC---C-CChHHeEEeC-CCEEEEEECCCC
Confidence            4456799999999872    45554443  77777776 54  444432211   1 4677889986 777666655678


Q ss_pred             eEEEEECCCCee---eeeee------ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCC---CcceeeEEe----CCCC
Q 040307          147 TCVIWDIDREIL---ETQLV------AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRD---KERSTIIYE----NPVQ  209 (339)
Q Consensus       147 ~v~i~d~~~~~~---~~~~~------~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~----~~~~  209 (339)
                      .+.++++.....   +....      ........++|+ .++.|.++.......+|.+..   .........    ....
T Consensus        92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence            899998765432   12221      123456899999 455555555554555555542   111111111    1112


Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------CCeeEEEeccCCCCeEEEEeCCCcE
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE---------GSVNGISWAPLYGRRLCSVADDSRA  280 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~~~~~dg~v  280 (339)
                      ...+..++++|.++++++....... +..+|...  +++..+.-..         ..--.|+|.|+| ++.++ ++-+.+
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~-L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~  246 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRA-LQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRF  246 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTE-EEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCe-EEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceE
Confidence            3467899999977777777666665 99999763  4555444322         256799999999 44444 666655


Q ss_pred             EEE
Q 040307          281 LIW  283 (339)
Q Consensus       281 ~iw  283 (339)
                      +.|
T Consensus       247 y~f  249 (255)
T 3qqz_A          247 YRF  249 (255)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=0.00025  Score=66.22  Aligned_cols=281  Identities=7%  Similarity=-0.009  Sum_probs=155.4

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe----ecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI----FDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|.++...++   +. |-+|+    .+ .|.+|+  ..+..+.......    .-....|.++...+++     .+.+.
T Consensus       211 ~~i~~i~~d~~---g~-lwigt----~~-Gl~~~d--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lWig  274 (781)
T 3v9f_A          211 NDVRCIYKDTN---GN-IWIGT----SK-GLALFN--ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-----KLWIA  274 (781)
T ss_dssp             SSEEEEEECTT---CC-EEEEE----TT-EEEEEE--TTTTEEEC-----------CCCCEEEEEECTTS-----EEEEE
T ss_pred             CceeEEEEcCC---CC-EEEEe----CC-cHheEC--CCCCcEEEEEcCCCccccccCceEEEEEECCCC-----CEEEE
Confidence            35777766666   65 44556    23 677744  4444433210000    0124568999988888     66665


Q ss_pred             eC-CcEEEEeecCCcceeEEE-------eecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--
Q 040307           94 SG-DSLRLWEIHDDRTELKSL-------LNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--  163 (339)
Q Consensus        94 ~~-~~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--  163 (339)
                      .. +-|.+++..+.+......       .......-....|.++...+ ++. |-.|+.++-|..++..+.... .+.  
T Consensus       275 t~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~  351 (781)
T 3v9f_A          275 TELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFH-TWSYS  351 (781)
T ss_dssp             ESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCE-EEC--
T ss_pred             eCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcce-eeccC
Confidence            55 488888887765322211       00000011125789998875 554 556777788888988655422 221  


Q ss_pred             --------ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307          164 --------AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNK  235 (339)
Q Consensus       164 --------~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~  235 (339)
                              .....|.++...+...|..|+.++-|..||..+................|.++...+ ++. |.+|+.+++ 
T Consensus       352 ~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~G-  428 (781)
T 3v9f_A          352 PTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGN-  428 (781)
T ss_dssp             --CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEE-
T ss_pred             ccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCC-
Confidence                    123568888887434455666666789999865432111110111335688888764 555 445666666 


Q ss_pred             EEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee----c
Q 040307          236 VVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY----Q  308 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~  308 (339)
                      +..+|... + ....+.   .....|.++...+++  .|..|+. +-|..||.....           .......    .
T Consensus       429 l~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~-----------~~~~~~~~~~~~  492 (781)
T 3v9f_A          429 ISYYNTRL-K-KFQIIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVFVIDLASKK-----------VIHHYDTSNSQL  492 (781)
T ss_dssp             EEEECSSS-C-EEEECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEEEEESSSSS-----------CCEEECTTTSSC
T ss_pred             EEEEcCCC-C-cEEEeccCCCCCCeEEEEEECCCC--CEEEEEC-CceEEEeCCCCe-----------EEecccCccccc
Confidence            99998764 2 223332   134578999988887  3555555 568888876654           0111100    0


Q ss_pred             ccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          309 SMAEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      ....|.++...++|..++ ++.++.|..|
T Consensus       493 ~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~  520 (781)
T 3v9f_A          493 LENFVRSIAQDSEGRFWI-GTFGGGVGIY  520 (781)
T ss_dssp             SCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred             ccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence            135688999888887444 4443334444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=3.4e-05  Score=70.50  Aligned_cols=156  Identities=7%  Similarity=-0.032  Sum_probs=97.8

Q ss_pred             EEEEcCCCCCEEEEEeCCC-------------------eEEEEECCCCeeeeeeec--cC-------CceeEEEec-CCc
Q 040307          128 SFDWAGFDTRRVATCSVDT-------------------TCVIWDIDREILETQLVA--HD-------REVYDISWG-GFN  178 (339)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~-------------------~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~  178 (339)
                      .+++.| +..+++.++.++                   .|..+|.++++.+..++.  |.       .+.....+. +++
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            467776 667888877665                   499999999998877753  21       222222222 343


Q ss_pred             ---EEEEEeCCCcEEEEECCCCcceeeEEeCC---------CCCC------------------------CeEEEEEecCC
Q 040307          179 ---VFASVSGDCSVRVFDLRDKERSTIIYENP---------VQDC------------------------PLLRLEWNKAD  222 (339)
Q Consensus       179 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~------------------------~v~~~~~~p~~  222 (339)
                         .++.++.+|.++++|..+++........+         ....                        .-..++++| +
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~  391 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-G  391 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-C
Confidence               68899999999999999987542211110         0000                        011267777 3


Q ss_pred             CCeEEEEe------------------------------------eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccC
Q 040307          223 PRFMATVG------------------------------------MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL  266 (339)
Q Consensus       223 ~~~l~~~~------------------------------------~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~  266 (339)
                      ..++++..                                    .++. |..||+.+ ++.+-+...+ .......+...
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~-l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~  468 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA-LLAWDPVK-QKAAWKVPYP-THWNGGTLSTA  468 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE-EEEEETTT-TEEEEEEEES-SSCCCCEEEET
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce-EEEEeCCC-CcEEEEccCC-CCCcCceeEeC
Confidence            34443321                                    1244 88999987 5555555443 23344445556


Q ss_pred             CCCeEEEEeCCCcEEEEEecCCC
Q 040307          267 YGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       267 ~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      + .+++.++.|+.++.||.++++
T Consensus       469 g-g~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          469 G-NLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             T-TEEEEECTTSEEEEEETTTCC
T ss_pred             C-CEEEEECCcccchhhhhhcCh
Confidence            6 488889999999999999887

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.55  E-value=2.3e-05  Score=72.74  Aligned_cols=194  Identities=10%  Similarity=0.017  Sum_probs=110.4

Q ss_pred             CEEEEEEc-CCCCCEEEEEeC-C----CeEEEEECCCC-eeee-eeeccCCceeEEEec-CCcEEEEEeCC-----CcEE
Q 040307          125 AITSFDWA-GFDTRRVATCSV-D----TTCVIWDIDRE-ILET-QLVAHDREVYDISWG-GFNVFASVSGD-----CSVR  190 (339)
Q Consensus       125 ~i~~~~~~-~~~~~~l~~~~~-d----~~v~i~d~~~~-~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d-----~~i~  190 (339)
                      .+...+|| | ++++||.+.. +    ..|+++|+.++ +.+. .+.   .....+.|+ +++.|+....+     ..|+
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            57789999 8 9998886543 2    25999999988 6322 121   123468899 67777766654     3588


Q ss_pred             EEECCCCcce-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCCce--EEEe-cCCCCeeEEEec
Q 040307          191 VFDLRDKERS-TIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTNPV--VVLS-KHEGSVNGISWA  264 (339)
Q Consensus       191 i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~~~--~~~~-~~~~~v~~~~~~  264 (339)
                      ++++.+.... ..++... .......+.|+| ++++|+..+..+  ..|+++|+.......  ..+. .......++.|+
T Consensus       251 ~~~lgt~~~~~~lv~~~~-~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEH-NPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EEETTSCGGGCEEEEECC-CTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             EEECCCCchhcEEEEecC-CCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            8888776532 3334332 223567889998 888877665432  258888987642222  3333 233445556554


Q ss_pred             cCCCCeEEEEeCC--CcEEEEEecCCCCCCCCCCCCCccccee-eeccc--ceeEEEEecCCCCceE-EEecCCeEEEE
Q 040307          265 PLYGRRLCSVADD--SRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSM--AEINVVRWSPLELDWI-AIAFVNKLQLL  337 (339)
Q Consensus       265 p~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~i~~~~~~p~~~~l~-~~~~d~~v~~w  337 (339)
                      . ++.+++....+  +..+||.+....  +        ..... +..+.  ..+..+.+.  +..++ +...++..++|
T Consensus       329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~--~--------~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          329 G-TSHLVILTNEGGAVNHKLLIAPRGQ--P--------SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             T-TTEEEEEECTTTCTTCEEEEEETTS--T--------TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred             e-CCEEEEEeCCCCCCCcEEEEEcCCC--c--------ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence            4 43455555544  444555444321  0        00112 22222  245666665  44454 45667765555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.54  E-value=8.4e-05  Score=66.53  Aligned_cols=137  Identities=7%  Similarity=-0.059  Sum_probs=83.5

Q ss_pred             eEEEEECCCCeeeeeeeccC----------CceeEEEec-CC---cEEEEEeCCCcEEEEECCCCcceeeEEeCCC----
Q 040307          147 TCVIWDIDREILETQLVAHD----------REVYDISWG-GF---NVFASVSGDCSVRVFDLRDKERSTIIYENPV----  208 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~----------~~v~~~~~~-~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----  208 (339)
                      .|..+|.++++.+..++...          .++. +... ++   ..++.++.+|.++++|..+++..-.......    
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            69999999999877765321          1111 1111 34   3677888999999999998875433221110    


Q ss_pred             ------CCCCe--------------------------EEEEEecCCCCeEEEEee-------------------------
Q 040307          209 ------QDCPL--------------------------LRLEWNKADPRFMATVGM-------------------------  231 (339)
Q Consensus       209 ------~~~~v--------------------------~~~~~~p~~~~~l~~~~~-------------------------  231 (339)
                            ...++                          ..++++| +..++++...                         
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccce
Confidence                  00011                          2467887 4455555432                         


Q ss_pred             ------------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          232 ------------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       232 ------------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                                  ++. |..||..+ ++.+.++... ..+.+..+...+ .+++.++.||.|+.||.++++
T Consensus       431 ~~~~~~~~~~~~~g~-l~a~D~~t-G~~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQ-IRAFDLTT-GKAKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEECTTSTTSCCCEE-EEEECTTT-CCEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred             eccCccccCCCCCCe-EEEEECCC-CCEEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCC
Confidence                        244 88999887 5555555432 233333333344 377779999999999999888

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.54  E-value=1.2e-05  Score=70.64  Aligned_cols=196  Identities=9%  Similarity=-0.067  Sum_probs=124.9

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCeeeeeeec-cCCceeEEEec---CCcEEEEEe------------------CCCcEEE
Q 040307          135 DTRRVATCSV-DTTCVIWDIDREILETQLVA-HDREVYDISWG---GFNVFASVS------------------GDCSVRV  191 (339)
Q Consensus       135 ~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~---~~~~l~~~~------------------~d~~i~i  191 (339)
                      |++++..... ++.|.+.|+.+.+....+.- .......+++.   ++.++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            5566665554 66799999999997774431 23457788873   477777774                  2457899


Q ss_pred             EECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--------------------------------------
Q 040307          192 FDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--------------------------------------  233 (339)
Q Consensus       192 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--------------------------------------  233 (339)
                      .|..+.+....+...    +....++.+| +++++++.+.+.                                      
T Consensus       180 ID~~t~~v~~qI~Vg----g~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          180 VDADKWEVAWQVLVS----GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EETTTTEEEEEEEES----SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EECCCCeEEEEEEeC----CCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            999987755554443    1345677888 788888777553                                      


Q ss_pred             CeEEEEecCC--CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307          234 NKVVVLDIRF--PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA  311 (339)
Q Consensus       234 ~~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (339)
                      . |.+.|.++  ....+..+.. .....++.++|||..+++++..+..|.++|+...+. ..+..-...........-..
T Consensus       255 ~-V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~-~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          255 G-VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA-VFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             T-EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH-HHHSCCCGGGGEEECCBCCS
T ss_pred             c-EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc-ccccccCcccceEEEcCCCC
Confidence            3 67777765  2222344443 345678999999954555555788999999996420 00000000000112223456


Q ss_pred             eeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307          312 EINVVRWSPLELDWI-AIAFVNKLQLLKV  339 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~-~~~~d~~v~~w~v  339 (339)
                      ....++|+|+| ++. +.-.|+.|.+|++
T Consensus       332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred             CcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence            68899999999 555 4558999999974

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.52  E-value=4e-05  Score=70.01  Aligned_cols=150  Identities=11%  Similarity=0.041  Sum_probs=84.4

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEE-EEEEcCCCCCEEEEEeC------CCeEEEEECCCCeeee
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAIT-SFDWAGFDTRRVATCSV------DTTCVIWDIDREILET  160 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~  160 (339)
                      .+++.+.+ .|..+|..+++  .+-.+........ ..+. .-...  ++ .++.+..      +|.|..+|.++++.+.
T Consensus       119 ~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~-~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKTGK--AIWSQQTTDPAKP-YSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCC--EEEEEECSCTTSS-CBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             EEEEEcCCCEEEEEECCCCC--EeeeeccCCCCCc-ceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence            45555445 99999999987  4433332110000 0011 00111  33 4444433      5899999999999877


Q ss_pred             eeeccC---C----------------------------ceeEEEec-CCcEEEEEeCCC-------------------cE
Q 040307          161 QLVAHD---R----------------------------EVYDISWG-GFNVFASVSGDC-------------------SV  189 (339)
Q Consensus       161 ~~~~~~---~----------------------------~v~~~~~~-~~~~l~~~~~d~-------------------~i  189 (339)
                      .+....   .                            ....+++. ..++++.+..++                   .|
T Consensus       193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            664210   0                            01135666 466777777665                   38


Q ss_pred             EEEECCCCcceeeEEeCCCCC-------CCeEEEEEecCCCC---eEEEEeeCCCeEEEEecCCCCCce
Q 040307          190 RVFDLRDKERSTIIYENPVQD-------CPLLRLEWNKADPR---FMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       190 ~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~---~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      ..+|.++++..=..... .+.       .+.....+.. +++   .++.++.++. ++++|..+ ++++
T Consensus       273 ~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~t-G~~l  337 (668)
T 1kv9_A          273 LAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGF-FYVLDRTN-GKLI  337 (668)
T ss_dssp             EEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTT-CCEE
T ss_pred             EEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCE-EEEEECCC-CCEe
Confidence            99999998844333222 111       2222223322 454   6788888888 99999887 5544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.52  E-value=0.0002  Score=61.77  Aligned_cols=247  Identities=8%  Similarity=0.039  Sum_probs=132.2

Q ss_pred             CceEEEEcCC---CCCCCCCeEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---
Q 040307           73 TPTNIAFFPS---EETLNPDIVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---  145 (339)
Q Consensus        73 ~v~~l~~~~~---~~~~~~~~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---  145 (339)
                      ....|+|.|+   +     .++++-. ..|+.++..+++   +..+....     .....+++++ +++++++....   
T Consensus       140 ~P~gvavd~~s~~g-----~Lyv~D~~~~I~~id~~~g~---v~~~~~~~-----~~P~giavd~-dG~lyVad~~~~~~  205 (433)
T 4hw6_A          140 NIWRMMFDPNSNYD-----DLYWVGQRDAFRHVDFVNQY---VDIKTTNI-----GQCADVNFTL-NGDMVVVDDQSSDT  205 (433)
T ss_dssp             CCCEEEECTTTTTC-----EEEEECBTSCEEEEETTTTE---EEEECCCC-----SCEEEEEECT-TCCEEEEECCSCTT
T ss_pred             CCceEEEccccCCC-----EEEEEeCCCCEEEEECCCCE---EEEeecCC-----CCccEEEECC-CCCEEEEcCCCCcc
Confidence            4678999985   4     5666655 488888887764   22232222     5688999998 88854443321   


Q ss_pred             C-eEEEEECCCCee-eeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          146 T-TCVIWDIDREIL-ETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       146 ~-~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                      . .+...+...+.. ...+. .......+++++  ++++++-..++.|+.+|..++.....+.... .......++|+| 
T Consensus       206 ~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dp-  282 (433)
T 4hw6_A          206 NTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHP-  282 (433)
T ss_dssp             SEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECT-
T ss_pred             cceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeC-
Confidence            1 233333322111 01221 223345677773  5555555567789999988665422332221 122345799998 


Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCc---eEEEecC---------------CCCeeEEEe---------ccCCCCeEEEE
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNP---VVVLSKH---------------EGSVNGISW---------APLYGRRLCSV  274 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~---~~~~~~~---------------~~~v~~~~~---------~p~~~~~l~~~  274 (339)
                      +++.|+.+......|+.++.......   ...+.+.               -.....+++         .+++ .++++-
T Consensus       283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD  361 (433)
T 4hw6_A          283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCD  361 (433)
T ss_dssp             TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEE
Confidence            77766666555444999886532111   1222221               123567898         6666 466666


Q ss_pred             eCCCcEEEEEecCCCCCCCCCCCC----Ccccc-eeeecccceeEEEEec-CCCCceEEEecCCeEEEEe
Q 040307          275 ADDSRALIWEVVGPGYRSGNGGPS----GDVEP-ELCYQSMAEINVVRWS-PLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       275 ~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~i~~~~~~-p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...++|+.++.. +......+...    +...- ......-.....|+++ +++..+++=..++.|+.+.
T Consensus       362 ~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          362 RDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             TTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            667788888742 22000000000    00000 0000011246789999 6666555666778888765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=0.00024  Score=61.22  Aligned_cols=153  Identities=10%  Similarity=0.167  Sum_probs=91.1

Q ss_pred             CceEEEEcCC-CCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC---
Q 040307           73 TPTNIAFFPS-EETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT---  146 (339)
Q Consensus        73 ~v~~l~~~~~-~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~---  146 (339)
                      ....|+++|+ +.    .++++-.. .|+.++++...   +..+....     .....++|++ +++.|+.+.. ++   
T Consensus       138 ~P~~lavdp~~~g----~Lyv~d~~~~I~~id~~~~~---v~~~~~~~-----~~P~~ia~d~-~G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHN----HLYLVGEQHPTRLIDFEKEY---VSTVYSGL-----SKVRTICWTH-EADSMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTEEE----EEEEEEBTEEEEEEETTTTE---EEEEECCC-----SCEEEEEECT-TSSEEEEEECCSCTTS
T ss_pred             CCCEEEECCCCCC----eEEEEeCCCcEEEEECCCCE---EEEEecCC-----CCcceEEEeC-CCCEEEEEeCCCCccc
Confidence            4578888873 31    55555553 88888887764   22222222     5678999998 8885555554 22   


Q ss_pred             -eEEEEECCCCeee--eeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          147 -TCVIWDIDREILE--TQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       147 -~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                       .+...+. .+...  ..+.. ......+++++  +.++++-...+.|..+|......... .... .......++|+| 
T Consensus       205 ~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~-~~~~P~gia~~p-  279 (430)
T 3tc9_A          205 PNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQ-DSGWEFHIQFHP-  279 (430)
T ss_dssp             EEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECS-SSSCCEEEEECT-
T ss_pred             ceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcC-CCCcceeEEEcC-
Confidence             3444443 33221  22322 23456778884  55555555678899999886653222 2221 124578999998 


Q ss_pred             CCCeEEEEeeCCCeEEEEecCC
Q 040307          222 DPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      ++++|+.+......|..++...
T Consensus       280 dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          280 SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCEEEEEECCCCEEEEEeCCc
Confidence            8886666655554599987653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.51  E-value=0.00036  Score=63.06  Aligned_cols=189  Identities=13%  Similarity=0.035  Sum_probs=117.4

Q ss_pred             CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307           89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE  168 (339)
Q Consensus        89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  168 (339)
                      -+|.+....|+..+++.........+.+-      ..+..++|++.++.++.+-..++.|..+++........+......
T Consensus         8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~   81 (628)
T 4a0p_A            8 FLLFSRRADIRRISLETNNNNVAIPLTGV------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY   81 (628)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEECCCCSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred             EEEEEeCCcEEEEECCCCCcceEEEcCCC------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCC
Confidence            34444445999999987652222222221      467799999855555556666889999998654433333322234


Q ss_pred             eeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCC
Q 040307          169 VYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPT  245 (339)
Q Consensus       169 v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~  245 (339)
                      ...+++.  .++++++-...+.|.+.++........ ...  .-.....++++|..|.++.+-.. .+. |...++..  
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-~~~--~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~dG--  155 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-VWK--DLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMDG--  155 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE-ECS--SCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTS--
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-EeC--CCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCCC--
Confidence            5677776  466667766778899999876553332 222  23467899999855544444212 333 77777754  


Q ss_pred             CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .....+...-.....+++++++.++.++-...+.|..+++....
T Consensus       156 ~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          156 SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN  199 (628)
T ss_dssp             CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence            33344433456788999999875455555566788888887655

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.50  E-value=0.00018  Score=64.54  Aligned_cols=71  Identities=10%  Similarity=-0.011  Sum_probs=47.3

Q ss_pred             EEEcCCCCCEEEEEeCC----------------CeEEEEECCCCeeeeeeeccCC----------ceeEEEe--cCC---
Q 040307          129 FDWAGFDTRRVATCSVD----------------TTCVIWDIDREILETQLVAHDR----------EVYDISW--GGF---  177 (339)
Q Consensus       129 ~~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~----------~v~~~~~--~~~---  177 (339)
                      +++.+ ...+++.+..+                +.|..+|.++++.+..++....          ++. +..  .++   
T Consensus       246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            44555 55666666554                4899999999998877653221          111 222  135   


Q ss_pred             cEEEEEeCCCcEEEEECCCCccee
Q 040307          178 NVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       178 ~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..++.++.+|.++++|.++++..-
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEee
Confidence            567788899999999999887543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.42  E-value=0.00056  Score=63.36  Aligned_cols=186  Identities=13%  Similarity=0.033  Sum_probs=112.8

Q ss_pred             eEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----eeeeeeec
Q 040307           90 IVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----ILETQLVA  164 (339)
Q Consensus        90 ~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----~~~~~~~~  164 (339)
                      +|+.+. ..|+..++...+.  .......      ..+..|+|.+.++.++++-...+.|+.+++...    .....+..
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~--~~l~~~~------~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEY--TSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCC--EEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             ccccccccceeEeeccCCcc--eeeecCC------CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec
Confidence            444444 4888888876652  2222222      567899999745555566566788999998653    22223332


Q ss_pred             cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEec
Q 040307          165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDI  241 (339)
Q Consensus       165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~  241 (339)
                      .......|++.  .++++++-...+.|.+.++........+. .  .-.....|+++|..+.++.+-... +. |...++
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~--~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~  544 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E--NGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL  544 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-C--TTCCEEEEEEETTTTEEEEEECSSSCE-EEEEET
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-C--CCCCcceEEEecCCCCEEEecCCCCCe-EEEEec
Confidence            33455677777  45677777778899999998665333332 2  234688999998445444443233 44 888887


Q ss_pred             CCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          242 RFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       242 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..  .....+. ..-...+.|++++.+.+++++-...+.|...++....
T Consensus       545 dG--~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          545 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             TS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CC--CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            64  3333333 2335788999998874444444455678888876554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.42  E-value=0.0005  Score=56.90  Aligned_cols=276  Identities=7%  Similarity=-0.055  Sum_probs=141.9

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ....+.+|.|.+.   +..+++|.     .+.|..  ....+................+.++.|.+ +     .+++.+.
T Consensus        34 ~~~~~~~v~~~~~---~~~~~~G~-----~g~i~~--s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-----~~~~~g~   97 (327)
T 2xbg_A           34 TTATILDMSFIDR---HHGWLVGV-----NATLME--TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-----EGWIVGE   97 (327)
T ss_dssp             CSSCEEEEEESSS---SCEEEEET-----TTEEEE--ESSTTSSCEECCCCCSCCCCEEEEEEEET-T-----EEEEEEE
T ss_pred             CCCcEEEEEECCC---CcEEEEcC-----CCeEEE--eCCCCCCCeECCCCCCCCCccEEEEEecC-C-----eEEEEEC
Confidence            3467899999877   77788665     676533  33333333321000011244688999986 4     5666654


Q ss_pred             C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEE
Q 040307           96 D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDI  172 (339)
Q Consensus        96 ~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~  172 (339)
                      . .|.. ..+.++ +..........     ..+..+.+.+ ++..++.+ .+|.|.. ....++..... ......+..+
T Consensus        98 ~g~i~~-S~DgG~tW~~~~~~~~~~-----~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~  168 (327)
T 2xbg_A           98 PPIMLH-TTDGGQSWSQIPLDPKLP-----GSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNL  168 (327)
T ss_dssp             TTEEEE-ESSTTSSCEECCCCTTCS-----SCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEE
T ss_pred             CCeEEE-ECCCCCCceECccccCCC-----CCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEE
Confidence            4 3332 333333 22221111111     3467777764 55555554 5665432 22234433322 2344578889


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      .+. ++.+++.+ .++.+..-+-..+..-..+...  ....+..+.+.| ++.+++ ++.++. +++.+... ++....+
T Consensus       169 ~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~--~~~~~~~~~~~~-~g~~~~-~~~~G~-~~~s~~D~-G~tW~~~  241 (327)
T 2xbg_A          169 NRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRT--TSRRLHNMGFTP-DGRLWM-IVNGGK-IAFSDPDN-SENWGEL  241 (327)
T ss_dssp             EECTTSCEEEEE-TTSSEEEEECTTCSSCEEEECC--SSSCEEEEEECT-TSCEEE-EETTTE-EEEEETTE-EEEECCC
T ss_pred             EEcCCCcEEEEE-CCCcEEEEeCCCCCceeECCCC--CCCccceeEECC-CCCEEE-EeCCce-EEEecCCC-CCeeEec
Confidence            998 55555554 5555544321112222222222  345788899987 666554 455665 66653211 1111111


Q ss_pred             e----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceE
Q 040307          252 S----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       252 ~----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~  326 (339)
                      .    .+...+.++.+.+++ .+++++ .+|.+ ++..+.+.          ....+... .....+.++.|.+++ .++
T Consensus       242 ~~~~~~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~DgG~----------tW~~~~~~~~~~~~~~~v~~~~~~-~~~  307 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQDGGQ----------TWQQDVDVKKVPSNFYKILFFSPD-QGF  307 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSSS-CEEEEE-STTCE-EEESSTTS----------SCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred             cCCcccCCcceEEEEecCCC-EEEEEe-CCCeE-EEeCCCCc----------ccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence            1    122358899999876 455554 46766 34444333          11111111 123567889887655 478


Q ss_pred             EEecCCeEEEE
Q 040307          327 AIAFVNKLQLL  337 (339)
Q Consensus       327 ~~~~d~~v~~w  337 (339)
                      +++.+|.|.-+
T Consensus       308 ~~G~~G~i~~~  318 (327)
T 2xbg_A          308 ILGQKGILLRY  318 (327)
T ss_dssp             EECSTTEEEEE
T ss_pred             EEcCCceEEEE
Confidence            88888887654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.41  E-value=0.0005  Score=56.59  Aligned_cols=227  Identities=6%  Similarity=-0.054  Sum_probs=130.5

Q ss_pred             EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCC---cc
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDD---RT  108 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~---~~  108 (339)
                      +|+.+.     .+.|+..+++.  .....    .......+..++|.+.+.    .++.+-..  .|..++++..   . 
T Consensus         3 ~ll~~~-----~~~I~~i~~~~--~~~~~----~~~~~~~p~g~~~d~~~~----~ly~~D~~~~~I~~~~~~g~~~~~-   66 (316)
T 1ijq_A            3 YLFFTN-----RHEVRKMTLDR--SEYTS----LIPNLRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVS-   66 (316)
T ss_dssp             EEEEEC-----BSSEEEEETTS--CCCEE----EECSCSSEEEEEEETTTT----EEEEEETTTTEEEEEEC--------
T ss_pred             EEEEEC-----CCeEEEEECCC--cceEe----hhcCCCceEEEEEEeCCC----EEEEEECCCCcEEEEECCCCCCCc-
Confidence            455555     56788855543  33332    123445678999998662    55555543  8888888762   1 


Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-C
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-D  186 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d  186 (339)
                      .....+...-     .....+++.+.+++++++-...+.|.+.++........+.........+++. .+..|..+.. .
T Consensus        67 ~~~~~~~~~~-----~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~  141 (316)
T 1ijq_A           67 SYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  141 (316)
T ss_dssp             -CEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             ccEEEEeCCC-----CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence            0122222111     3446888876355555665678899999986543332333233467889988 3444444443 3


Q ss_pred             -CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---CCCCeeEEE
Q 040307          187 -CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---HEGSVNGIS  262 (339)
Q Consensus       187 -~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~  262 (339)
                       +.|..+++..... ..+...  .-.....++++| ++..|+.+......|..+|+.. . ....+..   ......+++
T Consensus       142 ~~~I~~~~~dG~~~-~~~~~~--~~~~P~gla~d~-~~~~lY~~D~~~~~I~~~d~dg-~-~~~~~~~~~~~~~~P~gia  215 (316)
T 1ijq_A          142 PAKIKKGGLNGVDI-YSLVTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLA  215 (316)
T ss_dssp             SCEEEEEETTSCCE-EEEECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-C-SCEEEEECTTTTSSEEEEE
T ss_pred             CCeEEEEcCCCCCe-EEEEEC--CCCCceEEEEec-cCCEEEEEECCCCeEEEEecCC-C-ceEEEeecCCccCCcEEEE
Confidence             6788888765432 222222  234678999998 5555555544443499999864 2 2333322   123456788


Q ss_pred             eccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          263 WAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +.. + .++++-...+.|..++..+++
T Consensus       216 v~~-~-~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          216 VFE-D-KVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             EEC-C-EEEEEECCCCeEEEEeCCCCc
Confidence            853 3 566666677888888865544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.41  E-value=0.00066  Score=57.90  Aligned_cols=229  Identities=7%  Similarity=-0.021  Sum_probs=134.4

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc--c
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR--T  108 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~--~  108 (339)
                      .+|+.+.     .+.|+..  +.+......    .......+..|+|.+...    .++.+-. . .|+.++++...  .
T Consensus        84 ~~ll~~~-----~~~I~~i--~l~~~~~~~----~~~~~~~~~~l~~d~~~~----~lywsD~~~~~I~~~~~~g~~~~~  148 (400)
T 3p5b_L           84 AYLFFTN-----RHEVRKM--TLDRSEYTS----LIPNLRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVS  148 (400)
T ss_dssp             CEEEEEE-----TTEEEEE--CTTSCSCEE----EECSCSCEEEEEEETTTT----EEEEEETTTTEEEEEEC------C
T ss_pred             ceeEEec-----cceeEEE--ccCCcceeE----eccccCcceEEeeeeccC----ceEEEecCCCeEEEEEcccCCCCC
Confidence            3555555     5788884  444444332    134456788999998662    5555544 3 88888886521  0


Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEe-C-
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVS-G-  185 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~-~-  185 (339)
                      .....+....     .....+++.+..++++++-...+.|.+.+++.......+...-.....|++.+ +..|.... . 
T Consensus       149 ~~~~~~~~~~-----~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          149 SYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             CCEEEECSSC-----SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred             cceEEEeCCC-----CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence            1222222222     45678888864566666666778999999875543333333344578899983 44444443 3 


Q ss_pred             CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE-ec--CCCCeeEEE
Q 040307          186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL-SK--HEGSVNGIS  262 (339)
Q Consensus       186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~-~~--~~~~v~~~~  262 (339)
                      .+.|...++........ ...  .-.....++++| .+..|+.+......|..+|+.. .. ...+ ..  .-....+++
T Consensus       224 ~~~I~~~~~dG~~~~~~-~~~--~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG-~~-~~~~~~~~~~l~~P~gl~  297 (400)
T 3p5b_L          224 PAKIKKGGLNGVDIYSL-VTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-GN-RKTILEDEKRLAHPFSLA  297 (400)
T ss_dssp             SCCEEEEETTSCSCEEE-ECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CC-CEEEEECSSTTSSEEEEE
T ss_pred             CCEEEEEeCCCCccEEE-EEC--CCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCC-Cc-cEEEEeCCCCCCCCEEEE
Confidence            37888888876553332 222  225678999998 5555555554444499999864 22 2333 22  123455777


Q ss_pred             eccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          263 WAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +.  ++.++.+-...+.|..+|..+++
T Consensus       298 v~--~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          298 VF--EDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EE--TTEEEEEESSSCSEEEEESSSCC
T ss_pred             Ee--CCEEEEecCCCCeEEEEEcCCCC
Confidence            63  32467777777888888865554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.39  E-value=0.0014  Score=60.73  Aligned_cols=229  Identities=8%  Similarity=-0.024  Sum_probs=128.2

Q ss_pred             EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcc--e
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRT--E  109 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~--~  109 (339)
                      +|+.+.     ...|+..+++  ......   + ......+..|+|.+...    .++.+-..  .|+.++++....  .
T Consensus       397 ~Ll~an-----~~~Ir~i~l~--~~~~~~---l-~~~~~~~~gl~~d~~~~----~lY~sD~~~~~I~~~~l~g~~~~~~  461 (791)
T 3m0c_C          397 YLFFTN-----RHEVRKMTLD--RSEYTS---L-IPNLRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVSS  461 (791)
T ss_dssp             EEEEEC-----BSSEEEECTT--SCCCEE---E-ECSCSSEEEEEEETTTT----EEEEEETTTTEEEEEEC--------
T ss_pred             cccccc-----ccceeEeecc--CCccee---e-ecCCCceEEEeecccCC----eeEEeeccceeEEEEeccCCCCCcc
Confidence            455545     4667774443  333332   1 33455678999998652    55555543  888888875321  1


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C-CcEEEEEeCC-
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G-FNVFASVSGD-  186 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d-  186 (339)
                      ....+....     .....|++.+..++++++-...+.|.+.++........+...-.....|++. . +.++++-... 
T Consensus       462 ~~~vi~~~l-----~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~  536 (791)
T 3m0c_C          462 YDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP  536 (791)
T ss_dssp             CEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             eeEEEecCC-----CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC
Confidence            222222121     3456788876345666666678899999987544333333334457889998 3 4444443333 


Q ss_pred             CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC--CCCeeEEEec
Q 040307          187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--EGSVNGISWA  264 (339)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~  264 (339)
                      +.|...++........ ...  .-.....|++++ .+..|+.+......|..+++.. ......+...  -....+|++.
T Consensus       537 ~~I~~~~~dG~~~~~l-v~~--~l~~P~GLavD~-~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~  611 (791)
T 3m0c_C          537 AKIKKGGLNGVDIYSL-VTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF  611 (791)
T ss_dssp             CEEEEEETTSCCEEEE-ECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE
T ss_pred             CeEEEEecCCCceEEE-EeC--CCCCceEEEEec-CCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEe
Confidence            6788888876553333 222  235788999998 4455555544433488898864 2222222221  1234466663


Q ss_pred             cCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          265 PLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       265 p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                        +.+++++-...+.|...+..++.
T Consensus       612 --~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          612 --EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             --TTEEEEEETTTTEEEEEETTTCC
T ss_pred             --CCEEEEEECCCCEEEEEeCCCCc
Confidence              32455555566777777755554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=0.0009  Score=57.64  Aligned_cols=239  Identities=9%  Similarity=0.031  Sum_probs=132.7

Q ss_pred             CeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEeC-
Q 040307           19 PISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATSG-   95 (339)
Q Consensus        19 ~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~~-   95 (339)
                      .+..++++| +   +..|.++.    ..+.|+.  ++.++..+..   + .........++|++++     + ++++.. 
T Consensus       138 ~P~~lavdp~~---~g~Lyv~d----~~~~I~~--id~~~~~v~~---~-~~~~~~P~~ia~d~~G-----~~lyvad~~  199 (430)
T 3tc9_A          138 GAVWLSFDPKN---HNHLYLVG----EQHPTRL--IDFEKEYVST---V-YSGLSKVRTICWTHEA-----DSMIITNDQ  199 (430)
T ss_dssp             CCCEEEEETTE---EEEEEEEE----BTEEEEE--EETTTTEEEE---E-ECCCSCEEEEEECTTS-----SEEEEEECC
T ss_pred             CCCEEEECCCC---CCeEEEEe----CCCcEEE--EECCCCEEEE---E-ecCCCCcceEEEeCCC-----CEEEEEeCC
Confidence            567889998 5   55566666    2367777  4544444433   1 2344568899999999     6 666654 


Q ss_pred             --C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCce
Q 040307           96 --D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREV  169 (339)
Q Consensus        96 --~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v  169 (339)
                        .   .+.+.+ ..+.......+...      .....++++|.++.++++-..++.|..++...+....... ......
T Consensus       200 ~~~~~~~v~~~~-~~g~~~~~~~l~~~------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P  272 (430)
T 3tc9_A          200 NNNDRPNNYILT-RESGFKVITELTKG------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE  272 (430)
T ss_dssp             SCTTSEEEEEEE-GGGTSCSEEEEEEC------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC
T ss_pred             CCcccceEEEEe-CCCceeeeeeeccC------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc
Confidence              1   233333 33332212233221      3456788997556666666677899999998765422222 122346


Q ss_pred             eEEEec-CCc-EEEEEeCCCcEEEEECCCC--cc--eeeEEeCCCC------------CCCeE-EEEEec-------CCC
Q 040307          170 YDISWG-GFN-VFASVSGDCSVRVFDLRDK--ER--STIIYENPVQ------------DCPLL-RLEWNK-------ADP  223 (339)
Q Consensus       170 ~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~--~~--~~~~~~~~~~------------~~~v~-~~~~~p-------~~~  223 (339)
                      ..++|+ +++ ++++-...+.|..++....  ..  ...+......            -.... .++..+       .++
T Consensus       273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g  352 (430)
T 3tc9_A          273 FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY  352 (430)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred             eeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC
Confidence            789999 677 4555556788999876642  11  1111111000            01123 444432       124


Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEecC---------C---------CCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKH---------E---------GSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~---------~---------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      .++++-..+.. |+.++..  + .+..+.+.         .         .....|+++|++..++++-..++.|+.+++
T Consensus       353 ~lyvaD~~n~~-I~~i~~~--G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          353 DFYFCDRENHC-IRILTPQ--G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEEEEGGGTE-EEEECTT--S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             eEEEEECCCcE-EEEECCC--C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            44444333444 8888732  3 23333321         1         146789999953246666666778888776


Q ss_pred             c
Q 040307          286 V  286 (339)
Q Consensus       286 ~  286 (339)
                      +
T Consensus       429 e  429 (430)
T 3tc9_A          429 E  429 (430)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.36  E-value=0.00068  Score=55.81  Aligned_cols=230  Identities=9%  Similarity=-0.039  Sum_probs=133.1

Q ss_pred             EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeE
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELK  111 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~  111 (339)
                      +|+.+.     .+.|+.++++........  .  ......+..++|.+.+.    .++.+-. . .|..++++...... 
T Consensus         6 ~ll~~~-----~~~I~~i~l~~~~~~~~~--~--~~~~~~~~~ld~d~~~~----~lyw~D~~~~~I~r~~~~g~~~~~-   71 (318)
T 3sov_A            6 LLLYAN-----RRDLRLVDATNGKENATI--V--VGGLEDAAAVDFVFSHG----LIYWSDVSEEAIKRTEFNKTESVQ-   71 (318)
T ss_dssp             EEEEEC-----EEEEEEEETTCTTSCCEE--E--EEEEEEEEEEEEEGGGT----EEEEEETTTTEEEEEETTSSSCCC-
T ss_pred             EEEEEc-----cCeEEEEECCCCceEEEE--E--ecCCCccEEEEEEeCCC----EEEEEECCCCcEEEEEccCCCceE-
Confidence            455555     578888666554322222  1  22223467899998652    5655544 3 88888887653111 


Q ss_pred             EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe--CCCc
Q 040307          112 SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVS--GDCS  188 (339)
Q Consensus       112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~d~~  188 (339)
                      ..+...-     .....+++.+..++++++-...+.|.++++........+.........+++. .+..|..+.  ..+.
T Consensus        72 ~~~~~~l-----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~  146 (318)
T 3sov_A           72 NVVVSGL-----LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK  146 (318)
T ss_dssp             EEEEECC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred             EEEcCCC-----CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence            1111111     3455788876456666666667899999986543222222333456888888 344444444  2577


Q ss_pred             EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCC
Q 040307          189 VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG  268 (339)
Q Consensus       189 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~  268 (339)
                      |...++....... +...  .-.....++++| ++..|+.+......|..+|+.. ...............++++..+  
T Consensus       147 I~r~~~dG~~~~~-~~~~--~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~--  219 (318)
T 3sov_A          147 IERAGMDGSSRFI-IINS--EIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFED--  219 (318)
T ss_dssp             EEEEETTSCSCEE-EECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETT--
T ss_pred             EEEEEcCCCCeEE-EEEC--CCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCC--
Confidence            8888876544222 2222  224678999998 5555555554444499999864 2222222223445667787533  


Q ss_pred             CeEEEEeCCCcEEEEEecCCC
Q 040307          269 RRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       269 ~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .++.+-...+.|..++..+++
T Consensus       220 ~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          220 ILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEecCCCeEEEEECCCCC
Confidence            466676677888888876554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.35  E-value=9.5e-06  Score=74.12  Aligned_cols=228  Identities=7%  Similarity=-0.110  Sum_probs=122.4

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC------
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG------   95 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~------   95 (339)
                      ++++.++   ++++++|+.   .++.+.+||...  ........  ......-.++...+++     ++++.|+      
T Consensus       247 ~~~~~~~---g~lyv~GG~---~~~~v~~yd~~t--~~W~~~~~--~~~~R~~~s~~~~~dg-----~iyv~GG~~~~~~  311 (656)
T 1k3i_A          247 GISMDGN---GQIVVTGGN---DAKKTSLYDSSS--DSWIPGPD--MQVARGYQSSATMSDG-----RVFTIGGSWSGGV  311 (656)
T ss_dssp             EEEECTT---SCEEEECSS---STTCEEEEEGGG--TEEEECCC--CSSCCSSCEEEECTTS-----CEEEECCCCCSSS
T ss_pred             cccCCCC---CCEEEeCCC---CCCceEEecCcC--CceeECCC--CCccccccceEEecCC-----eEEEEeCcccCCc
Confidence            3566778   899999884   345788866543  33332111  1222223456677788     8888887      


Q ss_pred             --CcEEEEeecCCcceeEEEe--ecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCeeeeee
Q 040307           96 --DSLRLWEIHDDRTELKSLL--NSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------TTCVIWDIDREILETQL  162 (339)
Q Consensus        96 --~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~  162 (339)
                        +.+.+||..+.++..+...  .......  .   ...+.. ++..++.++.+         ..+..||..+..-....
T Consensus       312 ~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~--~---~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~  385 (656)
T 1k3i_A          312 FEKNGEVYSPSSKTWTSLPNAKVNPMLTAD--K---QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA  385 (656)
T ss_dssp             CCCCEEEEETTTTEEEEETTSCSGGGCCCC--T---TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred             ccccceEeCCCCCcceeCCCcccccccccc--c---cceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecC
Confidence              1689999988764433110  0000000  0   011122 45555555544         45678888776533322


Q ss_pred             eccC---------CceeEEEec--CCcEEEEEeCCC-----------cEEEEECCCCcceeeE-EeCCCCCCCeEEEEEe
Q 040307          163 VAHD---------REVYDISWG--GFNVFASVSGDC-----------SVRVFDLRDKERSTII-YENPVQDCPLLRLEWN  219 (339)
Q Consensus       163 ~~~~---------~~v~~~~~~--~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~  219 (339)
                      ..+.         ..-.++.|.  ++.+++.|+.++           .+.+||..+..-.... ...+.. ..-.+++..
T Consensus       386 ~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l  464 (656)
T 1k3i_A          386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVL  464 (656)
T ss_dssp             EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEEC
T ss_pred             CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEEC
Confidence            2111         122344443  678888887542           5778887776532221 011111 122344555


Q ss_pred             cCCCCeEEEEeeC-----------CCeEEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeC
Q 040307          220 KADPRFMATVGMD-----------SNKVVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVAD  276 (339)
Q Consensus       220 p~~~~~l~~~~~d-----------~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~  276 (339)
                      | +++++++|+.+           .. +.+||.....  ...+.   .....-....+.|++ ++++.|+.
T Consensus       465 ~-~g~i~v~GG~~~~~~~~~~~~~~~-v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg-~v~v~GG~  530 (656)
T 1k3i_A          465 P-DGSTFITGGQRRGIPFEDSTPVFT-PEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDG-RVFNGGGG  530 (656)
T ss_dssp             T-TSCEEEECCBSBCCTTCCCSBCCC-CEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred             C-CCCEEEECCcccCcCcCCCCcccc-eEEEcCCCCc--eeecCCCCCccccccHhhcCCCc-EEEecCCC
Confidence            5 88999998865           33 8999986521  12221   111122344567898 68888884

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.26  E-value=0.0022  Score=57.51  Aligned_cols=163  Identities=9%  Similarity=-0.029  Sum_probs=94.4

Q ss_pred             CeEEEEECCCCeeeeeeec--cC--------CceeEEEe--cCC---cEEEEEeCCCcEEEEECCCCcceeeEEeCCCC-
Q 040307          146 TTCVIWDIDREILETQLVA--HD--------REVYDISW--GGF---NVFASVSGDCSVRVFDLRDKERSTIIYENPVQ-  209 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~--~~--------~~v~~~~~--~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-  209 (339)
                      +.|..+|.++++.+..++.  |.        .++. +..  .++   ..++.++.+|.++++|.++++..-........ 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999998877643  21        1121 122  134   47888999999999999888744322211000 


Q ss_pred             ---------CC--------------------------------CeEEEEEecCCCCeEEEEee-----------------
Q 040307          210 ---------DC--------------------------------PLLRLEWNKADPRFMATVGM-----------------  231 (339)
Q Consensus       210 ---------~~--------------------------------~v~~~~~~p~~~~~l~~~~~-----------------  231 (339)
                               ..                                .-..++++|..+ ++++...                 
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                     00                                001356676444 3433321                 


Q ss_pred             ----------------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307          232 ----------------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG  295 (339)
Q Consensus       232 ----------------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  295 (339)
                                      .+. |..||+.+ ++.+-+..... ++..-.....+ .+++.++.||.++.||.++++      
T Consensus       449 ~~~g~~~~~~p~~~~~~G~-l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~------  518 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGS-LRAMDPVS-GKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK------  518 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEE-EEEECTTT-CCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC------
T ss_pred             ceeccceeecCCCCCCcce-EEEEECCC-CCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCC------
Confidence                            344 88899887 55555554322 22222222234 378889999999999999988      


Q ss_pred             CCCCcccceeeecccceeE--EEEecCCCCceEE
Q 040307          296 GPSGDVEPELCYQSMAEIN--VVRWSPLELDWIA  327 (339)
Q Consensus       296 ~~~~~~~~~~~~~~~~~i~--~~~~~p~~~~l~~  327 (339)
                             .+-.+.....+.  -+.|..+|+.+++
T Consensus       519 -------~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          519 -------ELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             -------EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             -------EEEEecCCCCcccCceEEEECCEEEEE
Confidence                   343332222222  2666678875554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.25  E-value=7.7e-06  Score=74.98  Aligned_cols=185  Identities=15%  Similarity=0.077  Sum_probs=105.7

Q ss_pred             eEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCC----Ceeeeeeec
Q 040307           90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC-SVDTTCVIWDIDR----EILETQLVA  164 (339)
Q Consensus        90 ~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~----~~~~~~~~~  164 (339)
                      +|.+....|+..+++..+  ....+...      ..+..++|++ ....|+.+ ...+.|+.+++..    ......+..
T Consensus       380 ll~~~~~~I~~id~~~~~--~~~~~~~~------~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~  450 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSE--YTSLIPNL------RNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  450 (699)
T ss_dssp             BCCCCTTC-CEECTTSCC--EECCSCCC------TTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred             EEecCccceEEEeCCCCc--ceeeeccC------cceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence            333333377777877654  22222221      3456889987 44444444 4568899999875    222222221


Q ss_pred             cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEec
Q 040307          165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDI  241 (339)
Q Consensus       165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~  241 (339)
                      .......|++.  .++++++-...+.|.++++........ ...  .......++++|..+.++++-... +. |..+++
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l-~~~--~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~  526 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FRE--QGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL  526 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEE-CCC--SSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCS
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEE-EeC--CCCCcceEEEccCCCcEEEcccCCCCe-EEEEeC
Confidence            12234567776  456666656678899999876543322 221  123457889998555554443222 45 887777


Q ss_pred             CCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          242 RFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       242 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..  .....+. ..-...+.|+|+|++.+++++-+..+.|..+++....
T Consensus       527 dG--~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~  573 (699)
T 1n7d_A          527 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  573 (699)
T ss_dssp             SS--CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred             CC--CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence            53  2222222 2234567899999875566666677789999887544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.24  E-value=0.0013  Score=58.76  Aligned_cols=151  Identities=13%  Similarity=0.086  Sum_probs=81.0

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecCCC--ccCCCCEEEEEEcCCCCCEEEEEeC------CCeEEEEECCCCeee
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKT--SEFSSAITSFDWAGFDTRRVATCSV------DTTCVIWDIDREILE  159 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~  159 (339)
                      .+++...+ .+..+|..+++..-...+..+..  .....++    ..  ++ .++.++.      ++.|..+|.++++.+
T Consensus       117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF----VA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE----EE--CC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            45555455 89999999887322222222110  0000111    11  33 4555544      799999999999987


Q ss_pred             eeeeccCCc-------------------------------------e-eEEEec-CCcEEEEEeCC--------------
Q 040307          160 TQLVAHDRE-------------------------------------V-YDISWG-GFNVFASVSGD--------------  186 (339)
Q Consensus       160 ~~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d--------------  186 (339)
                      ..+......                                     + ..+++. ....+..+..+              
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            766432110                                     0 123444 34455555432              


Q ss_pred             --CcEEEEECCCCcceeeEEeCCCC--------CCCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          187 --CSVRVFDLRDKERSTIIYENPVQ--------DCPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       187 --~~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                        +.|..+|.++++..=..... .+        ..++. +...+ ++   ..++.++.++. ++++|..+ ++.+...
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~-~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~-l~~lD~~t-G~~~w~~  342 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKT-PHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGI-LYTLNREN-GNLIVAE  342 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESS-TTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSE-EEEEETTT-CCEEEEE
T ss_pred             eEEEEEEEecCCCcEEEEecCC-CCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcE-EEEEECCC-CCEEeee
Confidence              25899999988743332221 11        11221 22222 55   35677777887 99999877 5555444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.23  E-value=0.0015  Score=54.54  Aligned_cols=236  Identities=11%  Similarity=0.067  Sum_probs=121.6

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC----CCEEEEEeCC-
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD----TRRVATCSVD-  145 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~d-  145 (339)
                      .....++|.|++     +++++-.. .|++++  +++...+..+.. ...+ ......|+|+| +    +.+.++-... 
T Consensus        31 ~~P~~ia~~pdG-----~l~V~e~~g~I~~i~--~g~~~~~~~~~v-~~~g-~~~p~gia~~p-df~~~g~lYv~~~~~~  100 (352)
T 2ism_A           31 EVPWALAFLPDG-----GMLIAERPGRIRLFR--EGRLSTYAELSV-YHRG-ESGLLGLALHP-RFPQEPYVYAYRTVAE  100 (352)
T ss_dssp             SCEEEEEECTTS-----CEEEEETTTEEEEEE--TTEEEEEEECCC-CCST-TCSEEEEEECT-TTTTSCEEEEEEEECT
T ss_pred             CCceEEEEcCCC-----eEEEEeCCCeEEEEE--CCCccEeecceE-eecC-CCCceeEEECC-CCCCCCEEEEEEecCC
Confidence            356899999999     88887665 888887  443223322220 0001 15678999998 5    3444443332 


Q ss_pred             ----CeEEEEECCCCe-----ee-eeee---ccCCceeEEEec-CCcEEEEEeCC-------------CcEEEEECCCC-
Q 040307          146 ----TTCVIWDIDREI-----LE-TQLV---AHDREVYDISWG-GFNVFASVSGD-------------CSVRVFDLRDK-  197 (339)
Q Consensus       146 ----~~v~i~d~~~~~-----~~-~~~~---~~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~i~d~~~~-  197 (339)
                          +.|..++...+.     .+ ..+.   ........++|. ++.++++.+..             +.|.-++.... 
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence                678888876431     11 1122   111233678998 67666654321             44555555431 


Q ss_pred             -----------cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-------eEEEEecCC---------------C
Q 040307          198 -----------ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-------KVVVLDIRF---------------P  244 (339)
Q Consensus       198 -----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-------~i~i~d~~~---------------~  244 (339)
                                 .........  + .....++|+|.++.++++-.....       .|.+.....               .
T Consensus       181 p~~npf~~~~~~~~~i~a~G--~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~  257 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLG--H-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRY  257 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEEC--C-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred             CCCCcccCCCCCCccEEEEc--C-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCC
Confidence                       011111111  1 235678999855665554322221       133322111               0


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                      ..++..+. +......++| .++ .++++.-..+.|...+++.... ..     ..............+.++++.|+|..
T Consensus       258 ~~p~~~~~-~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~-~~-----~~~~~~~~~~~~~rp~~v~~~pdG~l  328 (352)
T 2ism_A          258 RDPLYFWP-QGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERG-RW-----RVLRVETALSGFGRLREVQVGPDGAL  328 (352)
T ss_dssp             CCCSEECT-TCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETT-EE-----EEEEEEEEEESSCCEEEEEECTTSCE
T ss_pred             cCCeEecC-CCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCc-ce-----eecchheecccCCCeeEEEECCCCcE
Confidence            12333332 2234567787 455 4666655667788887765430 00     00001112223457899999999976


Q ss_pred             eEEEe
Q 040307          325 WIAIA  329 (339)
Q Consensus       325 l~~~~  329 (339)
                      +++..
T Consensus       329 yv~~~  333 (352)
T 2ism_A          329 YVTTS  333 (352)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.23  E-value=0.00058  Score=56.17  Aligned_cols=190  Identities=8%  Similarity=0.130  Sum_probs=112.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-----Cc---EEEEEeC---CCcEEEEECC--CCccee
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-----FN---VFASVSG---DCSVRVFDLR--DKERST  201 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~---~l~~~~~---d~~i~i~d~~--~~~~~~  201 (339)
                      ...+++.....+-+.+||+ +++.+..+..  +.++.+..-+     +.   ++++...   +++|.+|++.  +.. ..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            3456777778899999999 8888887753  4555555542     22   3333333   5789999774  332 22


Q ss_pred             eEEeC--C--CCCCCeEEEEE--ecCCCC-eEEEEeeCCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCCC
Q 040307          202 IIYEN--P--VQDCPLLRLEW--NKADPR-FMATVGMDSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLYG  268 (339)
Q Consensus       202 ~~~~~--~--~~~~~v~~~~~--~p~~~~-~l~~~~~d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~~  268 (339)
                      .+...  +  .....+..+++  +|..+. ++++...++. +..|++...      .+.+.++.. ...+-.+...+.. 
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~-  191 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY-  191 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT-
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC-
Confidence            22110  1  11145566777  665555 5677777776 988888431      234555554 4578899999887 


Q ss_pred             CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--c-ccceeEEEEe--cCCCC-ceEEEe-cCCeEEEEeC
Q 040307          269 RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--Q-SMAEINVVRW--SPLEL-DWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       269 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~--~p~~~-~l~~~~-~d~~v~~w~v  339 (339)
                      ..|+.+-++..  ||.+......    .  .....+...  + ....+..|+.  .++++ +|++++ .++++.+|+.
T Consensus       192 g~Lyv~eEd~G--Iw~~da~p~~----~--~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          192 GRLYIAEEDEA--IWKFSAEPDG----G--SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             TEEEEEETTTE--EEEEECSTTS----C--SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             CeEEEecccce--EEEEeCCcCC----C--CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            48999988855  5555532100    0  000122222  2 2346778877  55565 677777 6778888863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.19  E-value=0.0024  Score=55.04  Aligned_cols=239  Identities=10%  Similarity=0.017  Sum_probs=132.3

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--   96 (339)
                      ....++|.|+.+ ...|.++.    ..+.|+.  ++..++....   + ......+..++|++++     +++++...  
T Consensus       140 ~P~gvavd~~s~-~g~Lyv~D----~~~~I~~--id~~~g~v~~---~-~~~~~~P~giavd~dG-----~lyVad~~~~  203 (433)
T 4hw6_A          140 NIWRMMFDPNSN-YDDLYWVG----QRDAFRH--VDFVNQYVDI---K-TTNIGQCADVNFTLNG-----DMVVVDDQSS  203 (433)
T ss_dssp             CCCEEEECTTTT-TCEEEEEC----BTSCEEE--EETTTTEEEE---E-CCCCSCEEEEEECTTC-----CEEEEECCSC
T ss_pred             CCceEEEccccC-CCEEEEEe----CCCCEEE--EECCCCEEEE---e-ecCCCCccEEEECCCC-----CEEEEcCCCC
Confidence            466888988200 33455555    2377777  4444444443   1 2344568999999999     77777641  


Q ss_pred             ----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--cCCcee
Q 040307           97 ----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA--HDREVY  170 (339)
Q Consensus        97 ----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~v~  170 (339)
                          .+...+..... .....+...      .....++++|.++.++++-..++.|+.+|..++.....+..  ....-.
T Consensus       204 ~~~~gv~~~~~~~~~-~~~~~~~~~------~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~  276 (433)
T 4hw6_A          204 DTNTGIYLFTRASGF-TERLSLCNA------RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF  276 (433)
T ss_dssp             TTSEEEEEECGGGTT-CCEEEEEEC------SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred             cccceEEEEECCCCe-ecccccccc------CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence                23333332221 111122211      34557888874566666656678999999887765222211  112234


Q ss_pred             EEEec-CCc-EEEEEeCCCcEEEEECCC--Ccc--eeeEEeCCC------------CCCCeEEEEE---------ecCCC
Q 040307          171 DISWG-GFN-VFASVSGDCSVRVFDLRD--KER--STIIYENPV------------QDCPLLRLEW---------NKADP  223 (339)
Q Consensus       171 ~~~~~-~~~-~l~~~~~d~~i~i~d~~~--~~~--~~~~~~~~~------------~~~~v~~~~~---------~p~~~  223 (339)
                      .++++ +++ ++++-...+.|+.+++..  ...  +..+.....            .-.....+++         .+ ++
T Consensus       277 ~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g  355 (433)
T 4hw6_A          277 HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EY  355 (433)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CC
Confidence            69999 677 455555668899988653  211  111111100            0123567888         43 55


Q ss_pred             CeEEEEeeCCCeEEEEecCCCCCceEEEecC------------------CCCeeEEEec-cCCCCeEEEEeCCCcEEEEE
Q 040307          224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKH------------------EGSVNGISWA-PLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~------------------~~~v~~~~~~-p~~~~~l~~~~~dg~v~iwd  284 (339)
                      .++++-..++. |+.++..  + .+.++.+.                  -.....|+++ +++ .++++-..+++|+.++
T Consensus       356 ~lyvaD~~n~~-I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          356 DFYFCDRDSHT-VRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             EEEEEETTTTE-EEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEE
T ss_pred             cEEEEECCCCE-EEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEe
Confidence            55555444444 8888742  3 23333321                  1235689999 555 4666666677888877


Q ss_pred             ec
Q 040307          285 VV  286 (339)
Q Consensus       285 ~~  286 (339)
                      ++
T Consensus       431 ~e  432 (433)
T 4hw6_A          431 PE  432 (433)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.0026  Score=55.27  Aligned_cols=251  Identities=8%  Similarity=0.015  Sum_probs=134.2

Q ss_pred             ceEEEEcCC-CCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEE-------cCCCCCEEEEEe
Q 040307           74 PTNIAFFPS-EETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDW-------AGFDTRRVATCS  143 (339)
Q Consensus        74 v~~l~~~~~-~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~l~~~~  143 (339)
                      ...|+|.|. ..    .++++...  .|++.|++++.   +..+.......+ .....++|       ++ +++.|+++.
T Consensus       141 p~~la~dp~~~~----~Lyv~~~~~~~i~~ID~~~~~---v~~l~~~~~~~~-~~p~~ia~~~~~~~~d~-~G~~lyvad  211 (496)
T 3kya_A          141 NGRLAFDPLNKD----HLYICYDGHKAIQLIDLKNRM---LSSPLNINTIPT-NRIRSIAFNKKIEGYAD-EAEYMIVAI  211 (496)
T ss_dssp             EEEEEEETTEEE----EEEEEEETEEEEEEEETTTTE---EEEEECCTTSSC-SBEEEEEECCCBTTTBC-TTCEEEEEE
T ss_pred             CCEEEEccCCCC----EEEEEECCCCeEEEEECCCCE---EEEEEccCcccc-CCCcEEEEeecccccCC-CCCEEEEEe
Confidence            468899984 31    56666554  78888888775   222222111111 46889999       97 787666655


Q ss_pred             CCC-------eEEEEECCC-Ceee-----eeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECC-------CCcc--
Q 040307          144 VDT-------TCVIWDIDR-EILE-----TQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLR-------DKER--  199 (339)
Q Consensus       144 ~d~-------~v~i~d~~~-~~~~-----~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~-------~~~~--  199 (339)
                      ..+       .|.+++... +...     ..+... .....++.++  +.++++-..++.|..+|+.       ++..  
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence            543       366676443 2221     222222 2345677783  5666667778889999987       4442  


Q ss_pred             ---------eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce---EEEecC---C---------
Q 040307          200 ---------STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV---VVLSKH---E---------  255 (339)
Q Consensus       200 ---------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~---~~~~~~---~---------  255 (339)
                               ...+...+ .......++|+| ++++|+.+......|+.++.......+   ..+.+.   .         
T Consensus       291 p~~~~~~g~~~~l~~~~-~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~  368 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIA-DPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE  368 (496)
T ss_dssp             CBGGGCTTTEEEEEECS-SSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred             ccccccccccceeEecC-CCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccc
Confidence                     11222221 234568999998 888766666555558887654322111   222221   0         


Q ss_pred             ---CCee-EEEec-------cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC----------Ccccc-eeeeccccee
Q 040307          256 ---GSVN-GISWA-------PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS----------GDVEP-ELCYQSMAEI  313 (339)
Q Consensus       256 ---~~v~-~~~~~-------p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~i  313 (339)
                         .... .++..       +++ .++++=....+|+.++. .+......+...          +...- ......-...
T Consensus       369 a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P  446 (496)
T 3kya_A          369 ARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV  446 (496)
T ss_dssp             CBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred             cccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence               1233 44444       445 45555556778888873 222000000000          00000 0000011246


Q ss_pred             EEEEecCC-CCceEEEecCCeEEEEe
Q 040307          314 NVVRWSPL-ELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       314 ~~~~~~p~-~~~l~~~~~d~~v~~w~  338 (339)
                      ..|++.++ +..+++=..+..||.+.
T Consensus       447 ~gIavd~~~g~lyVaD~~N~rIrki~  472 (496)
T 3kya_A          447 SGLVYDDVKEMFYVHDQVGHTIRTIS  472 (496)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cEEEEECCCCEEEEEeCCCCEEEEEE
Confidence            78999997 76555666788888775

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.15  E-value=0.0034  Score=56.30  Aligned_cols=152  Identities=16%  Similarity=0.062  Sum_probs=82.1

Q ss_pred             eEEEeCC-cEEEEeecCCcceeEEEeecCCC--ccCCCCEEEEEEcCCCCCEEEEEe------CCCeEEEEECCCCeeee
Q 040307           90 IVATSGD-SLRLWEIHDDRTELKSLLNSNKT--SEFSSAITSFDWAGFDTRRVATCS------VDTTCVIWDIDREILET  160 (339)
Q Consensus        90 ~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~------~d~~v~i~d~~~~~~~~  160 (339)
                      +++...+ .+.-+|..+++..-...+..+..  .....++    ..  ++ .++.++      .++.|+.+|.++++.+.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~----v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPY----VV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVW  196 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCE----EE--CC-EEEEEecccccCCCCeEEEEECCCCcEEE
Confidence            5554445 88999998887322222222110  0000111    11  34 445544      38999999999999877


Q ss_pred             eeeccCCc-------------------------------------e-eEEEec-CCcEEEEEeCC---------------
Q 040307          161 QLVAHDRE-------------------------------------V-YDISWG-GFNVFASVSGD---------------  186 (339)
Q Consensus       161 ~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d---------------  186 (339)
                      .+......                                     + ..+++. ..++++.+..+               
T Consensus       197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y  276 (599)
T 1w6s_A          197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW  276 (599)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc
Confidence            66432111                                     0 023344 35566666554               


Q ss_pred             -CcEEEEECCCCcceeeEEeCCCCCC-------CeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          187 -CSVRVFDLRDKERSTIIYENPVQDC-------PLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       187 -~~i~i~d~~~~~~~~~~~~~~~~~~-------~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                       +.|..+|.++++..=. +....+..       ...-+.....++   ..++.++.++. ++++|.++ ++++...
T Consensus       277 ~~sv~Ald~~TG~~~W~-~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~t-G~~lw~~  349 (599)
T 1w6s_A          277 TMTIFGRDADTGEAKFG-YQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTD-GALVSAN  349 (599)
T ss_dssp             SSEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTT-CCEEEEE
T ss_pred             cceEEEEeCCCCceeeE-eecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE-EEEEECCC-CCEeecc
Confidence             3789999998874333 33222211       111122210155   46677778887 99999887 5555443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.13  E-value=0.0073  Score=58.52  Aligned_cols=190  Identities=8%  Similarity=0.058  Sum_probs=111.9

Q ss_pred             CCEEEEEe----------CCCeEEEEECCCCeeeeee-eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEE
Q 040307          136 TRRVATCS----------VDTTCVIWDIDREILETQL-VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIY  204 (339)
Q Consensus       136 ~~~l~~~~----------~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  204 (339)
                      ..+|+.|.          ..|.|++|++..++..... ....+++++++--.+.+++..  ...|++|++...+......
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~~~~  921 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELRTEC  921 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEEEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEEEEe
Confidence            46888876          3578999998654422211 234678888876656544443  4789999998765333111


Q ss_pred             eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307          205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALI  282 (339)
Q Consensus       205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~i  282 (339)
                      ..  . ..+..+.... .++++++|..-.+ +.++..+.....+..+..  +..+++++.+-.++  .++.+..+|.+.+
T Consensus       922 ~~--~-~~i~~~~l~~-~~~~I~vgD~~~S-v~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~v  994 (1158)
T 3ei3_A          922 NH--Y-NNIMALYLKT-KGDFILVGDLMRS-VLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD--NFLGAENAFNLFV  994 (1158)
T ss_dssp             EE--C-CCSCEEEEEE-ETTEEEEEESSBC-EEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT--EEEEEETTSEEEE
T ss_pred             ec--c-ccEEEEEEec-cCCEEEEEEhhhe-EEEEEEEcCCCeEEEEEeecccccEEEEEEEccC--cEEEEcCCCcEEE
Confidence            11  1 1122222222 4678888888877 877765543333444432  34578888887664  6778999999999


Q ss_pred             EEecCCCCCCCCCCCCCcccceeeecccceeEEEE---ecCCC---------CceEEEecCCeEEEE
Q 040307          283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVR---WSPLE---------LDWIAIAFVNKLQLL  337 (339)
Q Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~p~~---------~~l~~~~~d~~v~~w  337 (339)
                      ........ ..  .....+.....+.....|+++.   +.+.+         +.++.++.+|.|-+.
T Consensus       995 l~~~~~~~-~~--~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A          995 CQKDSAAT-TD--EERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             EEECTTCC-ST--TGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred             EecCCCCC-Cc--cccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence            98877431 11  0011122223334466677775   33332         236678888887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.11  E-value=0.0026  Score=52.57  Aligned_cols=231  Identities=8%  Similarity=0.032  Sum_probs=124.1

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      ..+.+|.|.|.    ..+++|.     .+.|..  -...+......... ..++..+..+.+.+++     .+++.+.+ 
T Consensus        80 ~~~~~i~~~~~----~~~~~g~-----~g~i~~--S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~-----~~~~~~~~g  142 (327)
T 2xbg_A           80 YRFNSVSFQGN----EGWIVGE-----PPIMLH--TTDGGQSWSQIPLD-PKLPGSPRLIKALGNG-----SAEMITNVG  142 (327)
T ss_dssp             CEEEEEEEETT----EEEEEEE-----TTEEEE--ESSTTSSCEECCCC-TTCSSCEEEEEEEETT-----EEEEEETTC
T ss_pred             ccEEEEEecCC----eEEEEEC-----CCeEEE--ECCCCCCceECccc-cCCCCCeEEEEEECCC-----CEEEEeCCc
Confidence            36788888754    4455554     565544  44334444431000 1234567888888777     77777764 


Q ss_pred             cEEEEeecC-Cc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE-EECCCCeeeeee-eccCCceeEE
Q 040307           97 SLRLWEIHD-DR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI-WDIDREILETQL-VAHDREVYDI  172 (339)
Q Consensus        97 ~i~iw~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i-~d~~~~~~~~~~-~~~~~~v~~~  172 (339)
                      .|  |...+ ++ +...  .....     ..+..+.+.| ++.+++.+. +|.+.. .|- .++....+ ......+..+
T Consensus       143 ~v--~~S~DgG~tW~~~--~~~~~-----~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~  210 (327)
T 2xbg_A          143 AI--YRTKDSGKNWQAL--VQEAI-----GVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNM  210 (327)
T ss_dssp             CE--EEESSTTSSEEEE--ECSCC-----CCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEE
T ss_pred             cE--EEEcCCCCCCEEe--ecCCC-----cceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCcccee
Confidence            43  33322 32 2222  22222     5788999997 777776654 455443 332 12222222 2344578888


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      .+. ++. +..++.+|.+++.+...++.-..+... ......+..+++.| ++.+++++ .++. + ++.... ++.-..
T Consensus       211 ~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~-i-~~S~Dg-G~tW~~  284 (327)
T 2xbg_A          211 GFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGA-L-LCSQDG-GQTWQQ  284 (327)
T ss_dssp             EECTTSC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTC-E-EEESST-TSSCEE
T ss_pred             EECCCCC-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCe-E-EEeCCC-CcccEE
Confidence            888 454 445567787777642222211111111 01223588899986 66666554 4665 5 333332 443444


Q ss_pred             Eec---CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          251 LSK---HEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       251 ~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      +..   ....+.++.|.+++  .+++++.+|.|.-++-
T Consensus       285 ~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          285 DVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT  320 (327)
T ss_dssp             CGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred             cCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence            432   23568889998654  5667777887766553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.02  E-value=0.0075  Score=54.53  Aligned_cols=228  Identities=7%  Similarity=-0.042  Sum_probs=136.1

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCccee
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTEL  110 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~  110 (339)
                      .+|+.+.     .+.|+..+++...  ...  .+....-..+..|+|.+.+.    .++.+-. + .|..++++....  
T Consensus         7 ~~Ll~s~-----~~~I~~i~l~~~~--~~~--~~~~~~~~~~~~l~~d~~~~----~lywtD~~~~~I~r~~~~g~~~--   71 (628)
T 4a0p_A            7 AFLLFSR-----RADIRRISLETNN--NNV--AIPLTGVKEASALDFDVTDN----RIYWTDISLKTISRAFMNGSAL--   71 (628)
T ss_dssp             CEEEEEE-----TTEEEEEESSCTT--CEE--ECCCCSCSCEEEEEEETTTT----EEEEEETTTTEEEEEETTSCSC--
T ss_pred             cEEEEEe-----CCcEEEEECCCCC--cce--EEEcCCCCceEEEEEECCCC----EEEEEECCCCeEEEEECCCCCc--
Confidence            3555555     6889986665432  221  11122334678999999763    5555544 3 888888876542  


Q ss_pred             EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEe--CCC
Q 040307          111 KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVS--GDC  187 (339)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~--~d~  187 (339)
                      ...+....     .....+++.+..++++.+-...+.|.+.++........+...-.....|++.| ...|..+.  ..+
T Consensus        72 ~~v~~~g~-----~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~  146 (628)
T 4a0p_A           72 EHVVEFGL-----DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP  146 (628)
T ss_dssp             EEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             EEEEeCCC-----CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence            22222211     34557888764556666666678999999865432222223334568899983 34444443  256


Q ss_pred             cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307          188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY  267 (339)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~  267 (339)
                      .|...++......... .   .-.....+++++ .+..|+.+......|..+|+.....  ..+........++++.. +
T Consensus       147 ~I~r~~~dG~~~~~l~-~---~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~  218 (628)
T 4a0p_A          147 KIDRAAMDGSERTTLV-P---NVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D  218 (628)
T ss_dssp             EEEEEETTSCSCEEEE-C---SCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T
T ss_pred             EEEEEeCCCCceEEEE-C---CCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C
Confidence            7777887765533332 2   235778999998 5555665555444499999875332  33444344566788765 3


Q ss_pred             CCeEEEEeCCCcEEEEEecCCC
Q 040307          268 GRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       268 ~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                       .++++-...+.|...|..++.
T Consensus       219 -~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          219 -YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             -EEEEEETTTTEEEEEETTTCC
T ss_pred             -EEEEecCCCCEEEEEECCCCC
Confidence             466666667888888865554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.00  E-value=0.0082  Score=54.22  Aligned_cols=160  Identities=14%  Similarity=0.023  Sum_probs=99.4

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCccee
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERST  201 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~  201 (339)
                      ..+.+++|.+.++.++.+-...+.|+.+++........+...-.....+++.  .++++++-+..+.|.+.++...... 
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~-  427 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK-  427 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE-
Confidence            4577899997455555555567889999986543333333222456677876  4667777677889999998866532 


Q ss_pred             eEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEecCCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307          202 IIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDIRFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSR  279 (339)
Q Consensus       202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~  279 (339)
                      .+...  .-.....++++|..|.++.+-... .. |...++..  .....+ ...-...+.+++++++.++.++=+..+.
T Consensus       428 ~l~~~--~l~~P~~iavdp~~G~ly~tD~g~~~~-I~r~~~dG--~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~  502 (619)
T 3s94_A          428 ILISE--DLEEPRAIVLDPMVGYMYWTDWGEIPK-IERAALDG--SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK  502 (619)
T ss_dssp             EEECT--TCCSEEEEEEETTTTEEEEEECSSSCE-EEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEC--CCCCeeeEEEEcCCCcEEEecCCCCCE-EEEEccCC--CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCE
Confidence            22322  235689999999555555543222 33 66666653  223333 2234567899999977434444445577


Q ss_pred             EEEEEecCCC
Q 040307          280 ALIWEVVGPG  289 (339)
Q Consensus       280 v~iwd~~~~~  289 (339)
                      |..+++....
T Consensus       503 I~~~~~dG~~  512 (619)
T 3s94_A          503 IEVMNTDGTG  512 (619)
T ss_dssp             EEEEESSSCC
T ss_pred             EEEEecCCCc
Confidence            8888876554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.97  E-value=0.00021  Score=65.54  Aligned_cols=221  Identities=12%  Similarity=-0.003  Sum_probs=115.7

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC--CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET--SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ..+..++|.+.   +..|..+..   ..+.|+.++++...  .....  .+ ...-..+..|++.+.+.    .++++-.
T Consensus       406 ~~p~gla~d~~---~~~Ly~sD~---~~~~I~~~~~~g~~~~~~~~~--~i-~~~~~~P~glavD~~~g----~LY~tD~  472 (699)
T 1n7d_A          406 RNVVALDTEVA---SNRIYWSDL---SQRMICSTQLDRAHGVSSYDT--VI-SRDIQAPDGLAVDWIHS----NIYWTDS  472 (699)
T ss_dssp             TTCCCCEEETT---TTEEEECCT---TTTSBEEEESCCCCC-CCCCC--BC-CSCC--CCCEECCCSSS----BCEECCT
T ss_pred             cceEEEccccc---cCeEEEEec---CCCeEEEEecCCCCCCcceEE--EE-eCCCCCcceEEEEeeCC----cEEEEec
Confidence            45678899987   666666552   46788886665311  11111  11 11123456788885542    5666544


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-CeEEEEECCCCeeeeee-eccCCceeE
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-TTCVIWDIDREILETQL-VAHDREVYD  171 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~-~~~~~~v~~  171 (339)
                       . .|.+++++...  ....+....     .....+++.|..+.++++-... +.|...++.... ...+ ...-.....
T Consensus       473 ~~~~I~v~d~dg~~--~~~l~~~~~-----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnG  544 (699)
T 1n7d_A          473 VLGTVSVADTKGVK--RKTLFREQG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNG  544 (699)
T ss_dssp             TTSCEEEEBSSSCC--EEEECCCSS-----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCC
T ss_pred             cCCeEEEEecCCCc--eEEEEeCCC-----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccE
Confidence             3 89999987654  222222211     3456888988444444443222 678887775332 2222 122234567


Q ss_pred             EEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          172 ISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       172 ~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      |+++ + +.++++-...+.|..+|+....... +............|++..  +.++++....+. |..+|..+ ++.+.
T Consensus       545 lavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~-~~~~~~~~~~P~glavd~--~~lywtd~~~~~-V~~~d~~~-G~~~~  619 (699)
T 1n7d_A          545 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAVFE--DKVFWTDIINEA-IFSANRLT-GSDVN  619 (699)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEECSSSSCCEE-ECCCSSSCSSCCCCEEET--TEEEEECSTTTC-EEEEETTT-EEEEE
T ss_pred             EEEeccCCEEEEEecCCCeEEEEccCCCceEE-EEecCCcCCCceEeEEEC--CEEEEEeCCCCe-EEEEEccC-CCceE
Confidence            8998 4 5555666667789999987544222 222111122344566653  344444444445 88888654 33333


Q ss_pred             EEecCCCCeeEEEec
Q 040307          250 VLSKHEGSVNGISWA  264 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~  264 (339)
                      .+.........|++.
T Consensus       620 ~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          620 LLAENLLSPEDMVLF  634 (699)
T ss_dssp             CCCTTCSSCCCCCBC
T ss_pred             EeecCCCCCcEEEEe
Confidence            333222233444433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.96  E-value=0.0024  Score=52.02  Aligned_cols=157  Identities=10%  Similarity=0.109  Sum_probs=98.5

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eeec----cC--CceeEEEe---c-CCcEEEEEe----------
Q 040307          126 ITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET-QLVA----HD--REVYDISW---G-GFNVFASVS----------  184 (339)
Q Consensus       126 i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~----~~--~~v~~~~~---~-~~~~l~~~~----------  184 (339)
                      -.+++|++.++.++++.-..++|..||...+.... .+..    ..  ..+..|.|   . ++.++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34788987445555554479999999997554322 2221    11  13578999   4 455555443          


Q ss_pred             ---CCCcEEEEECC---CCcceeeEEeCC---C-------CCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEecCCCCCc
Q 040307          185 ---GDCSVRVFDLR---DKERSTIIYENP---V-------QDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDIRFPTNP  247 (339)
Q Consensus       185 ---~d~~i~i~d~~---~~~~~~~~~~~~---~-------~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~~~~~~~  247 (339)
                         .+..|..||+.   +++.....-...   .       .......++..+ +|+..++++.. +. |...+...  +.
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~-I~rV~pdG--~~  170 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPA-IARVSADG--KT  170 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCE-EEEECTTS--CC
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCe-EEEEeCCC--CE
Confidence               26779999999   565333222100   0       113478999997 88988888887 66 66666543  33


Q ss_pred             eEEEec------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307          248 VVVLSK------HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG  287 (339)
Q Consensus       248 ~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~  287 (339)
                      +..+..      .....+.|+++|++ ++|++....|.+.-+|+..
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence            332211      11236799999999 5777666699999999884

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.95  E-value=0.0042  Score=50.57  Aligned_cols=231  Identities=13%  Similarity=0.096  Sum_probs=115.7

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C------cEEEEeec
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D------SLRLWEIH  104 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~------~i~iw~~~  104 (339)
                      +.+++.|+.....-..+.+|+..  .........+  .....-.++... ++     .+++.|+ +      .+.+||..
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~--~~~W~~~~~~--p~~r~~~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~d~~   85 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFK--EERWHQVAEL--PSRRCRAGMVYM-AG-----LVFAVGGFNGSLRVRTVDSYDPV   85 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETT--TTEEEEECCC--SSCCBSCEEEEE-TT-----EEEEESCBCSSSBCCCEEEEETT
T ss_pred             CEEEEECCCCCCCCCcEEEEcCc--CCcEeEcccC--CcccccceEEEE-CC-----EEEEEeCcCCCccccceEEECCC
Confidence            45777777322222456665544  3444331111  111111222222 55     6777776 1      68889988


Q ss_pred             CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCCeeee--eeeccCCceeEEEecCC
Q 040307          105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDREILET--QLVAHDREVYDISWGGF  177 (339)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~  177 (339)
                      +.++..+..+....     .....+.+   ++.+++.|+.++     .+.+||+.+.+-..  .+.. ...-.++...++
T Consensus        86 ~~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~  156 (302)
T 2xn4_A           86 KDQWTSVANMRDRR-----STLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGVGVVGG  156 (302)
T ss_dssp             TTEEEEECCCSSCC-----BSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEEETT
T ss_pred             CCceeeCCCCCccc-----cceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-cccCceEEEECC
Confidence            88755554433221     11222222   567888887653     57789987765221  1211 111122333357


Q ss_pred             cEEEEEeCC-------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCCCC
Q 040307          178 NVFASVSGD-------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFPTN  246 (339)
Q Consensus       178 ~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~~~  246 (339)
                      .+++.|+.+       ..+.+||+.+.+-... ...+...... +++..  ++.+++.|+.++.    .+.+||..+.  
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--  230 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYI-AEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN--  230 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT--
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-CCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--
Confidence            777777643       3588999987753222 1121122222 23332  6678888876531    3889998752  


Q ss_pred             ceEEEecCCC-Ce-eEEEeccCCCCeEEEEeCCC-----cEEEEEecCCC
Q 040307          247 PVVVLSKHEG-SV-NGISWAPLYGRRLCSVADDS-----RALIWEVVGPG  289 (339)
Q Consensus       247 ~~~~~~~~~~-~v-~~~~~~p~~~~~l~~~~~dg-----~v~iwd~~~~~  289 (339)
                      ....+..... .. .+++. -++ ++++.|+.++     .+.+||+....
T Consensus       231 ~W~~~~~~~~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          231 AWRQVADMNMCRRNAGVCA-VNG-LLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEeeCCCCCCccccCeEEE-ECC-EEEEECCcCCCcccccEEEEcCCCCe
Confidence            1222221111 11 11222 244 5777777553     47788776644

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.89  E-value=0.0053  Score=51.02  Aligned_cols=188  Identities=12%  Similarity=0.065  Sum_probs=104.5

Q ss_pred             EEEEEEcCCCCCEEEEE------------eCCCeEEEEECCCCe-eeee--eec-----cCCceeEEEec---CCc--EE
Q 040307          126 ITSFDWAGFDTRRVATC------------SVDTTCVIWDIDREI-LETQ--LVA-----HDREVYDISWG---GFN--VF  180 (339)
Q Consensus       126 i~~~~~~~~~~~~l~~~------------~~d~~v~i~d~~~~~-~~~~--~~~-----~~~~v~~~~~~---~~~--~l  180 (339)
                      ..++...| ++..++++            ..+|.|.++|+++.. ....  +.+     ..-....+.+.   ++.  ++
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34666666 66555554            268999999987431 1122  222     12345666664   232  44


Q ss_pred             EEEeC--CCcEEEEECCCCcceee-EEeC-CCCCCCeEEEEEecCCCCeEEEEee-----------------CCCeEEEE
Q 040307          181 ASVSG--DCSVRVFDLRDKERSTI-IYEN-PVQDCPLLRLEWNKADPRFMATVGM-----------------DSNKVVVL  239 (339)
Q Consensus       181 ~~~~~--d~~i~i~d~~~~~~~~~-~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~-----------------d~~~i~i~  239 (339)
                      ++-..  +..|.+|++........ +... ...-...+.+.+.+ +|.+.++...                 .+. |.-+
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~  208 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYY  208 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccE-EEEE
Confidence            44333  46778887765432222 2111 11234678999997 7777665431                 122 4445


Q ss_pred             ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307          240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS  319 (339)
Q Consensus       240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  319 (339)
                      |.   ++ +..+...-..-+.++|+||+..+.++-+..+.|..|++....          .+.....+......-.++..
T Consensus       209 d~---~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g----------~l~~~~~~~~~g~PDGi~vD  274 (355)
T 3sre_A          209 SP---ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW----------TLTPLRVLSFDTLVDNISVD  274 (355)
T ss_dssp             CT---TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS----------CEEEEEEEECSSEEEEEEEC
T ss_pred             EC---Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC----------cEecCEEEeCCCCCceEEEe
Confidence            43   22 333333334678999999995444555567899999997533          11111222334567788888


Q ss_pred             C-CCCceEEEec
Q 040307          320 P-LELDWIAIAF  330 (339)
Q Consensus       320 p-~~~~l~~~~~  330 (339)
                      + +|..++++..
T Consensus       275 ~e~G~lwva~~~  286 (355)
T 3sre_A          275 PVTGDLWVGCHP  286 (355)
T ss_dssp             TTTCCEEEEEES
T ss_pred             CCCCcEEEEecC
Confidence            8 5876665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.85  E-value=0.0077  Score=49.13  Aligned_cols=209  Identities=7%  Similarity=0.005  Sum_probs=122.8

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC--CccCCCCEEEEEE---cCCCCCEEEEE
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK--TSEFSSAITSFDW---AGFDTRRVATC  142 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~---~~~~~~~l~~~  142 (339)
                      ..-...+++|.+...    .++++.- . +|..|+...+....+ .+.+-.  ..+ ...+..|.|   .| ++.++++.
T Consensus        11 ~~~yPE~~~wd~~~g----~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~-~~~~sGl~~~~~D~-~grL~vv~   83 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQ----VFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDG-EQQMSGLSLLTHDN-SKRLFAVM   83 (334)
T ss_dssp             TTCCCSCEEEETTTT----EEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCC-SEEEEEEEESSSSS-CCEEEEEE
T ss_pred             cccCCcCccCcCCCC----EEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCC-cceeeEEEEeccCC-CCcEEEEE
Confidence            344567889988652    4555543 4 999999876542222 332210  000 024579999   57 67777754


Q ss_pred             eC-------------CCeEEEEECC---CCeeeeeee--cc-----------CCceeEEEec-CCcEEEEEeCC-CcEEE
Q 040307          143 SV-------------DTTCVIWDID---REILETQLV--AH-----------DREVYDISWG-GFNVFASVSGD-CSVRV  191 (339)
Q Consensus       143 ~~-------------d~~v~i~d~~---~~~~~~~~~--~~-----------~~~v~~~~~~-~~~~l~~~~~d-~~i~i  191 (339)
                      ..             +..|..+|+.   +++.+....  ..           .....+++.. +++..++++.. +.|..
T Consensus        84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred             cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence            42             6789999998   776554432  11           1247788888 79999998888 88777


Q ss_pred             EECCCCcceeeEE-eC--CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe--cC---CCCeeEE-E
Q 040307          192 FDLRDKERSTIIY-EN--PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS--KH---EGSVNGI-S  262 (339)
Q Consensus       192 ~d~~~~~~~~~~~-~~--~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~--~~---~~~v~~~-~  262 (339)
                      ++..... ..... ..  .......+.|+++| +++.|++....+. +..+|++.+......+.  +.   -.....+ .
T Consensus       164 V~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~-L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp  240 (334)
T 2p9w_A          164 VSADGKT-VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRA-LTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVT  240 (334)
T ss_dssp             ECTTSCC-EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSS-EEEEECSSSSCCCEECEESSCCCCCTTEEEEEE
T ss_pred             EeCCCCE-EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCe-EEEEcCCCCcceeecccccCCcccccCcccccc
Confidence            7776553 22222 11  11123367899998 8888877766777 99999885322111121  21   1123343 3


Q ss_pred             eccCCCCe-EEEEeCCCcEEEEEecCCC
Q 040307          263 WAPLYGRR-LCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       263 ~~p~~~~~-l~~~~~dg~v~iwd~~~~~  289 (339)
                      --.+| ++ |++....+.+.+.+.+...
T Consensus       241 ~~~~G-~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          241 VPVGN-ESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             EEETT-EEEEEEEETTEEEEEECSSTTS
T ss_pred             cccCC-EEEEEEcCCCCEEEEECCCCcc
Confidence            33456 45 5555566655555544433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.85  E-value=0.016  Score=52.41  Aligned_cols=270  Identities=9%  Similarity=0.013  Sum_probs=138.2

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-   96 (339)
                      .....|++.|.   +..|....+  +..+.|..  .+.++.....   +....-...+.|++.+++.    +++.+-.. 
T Consensus       127 ~~P~~Iavdp~---~g~ly~tD~--g~~~~I~r--~~~dG~~~~~---l~~~~~~~P~Glald~~~~----~LY~aD~~~  192 (619)
T 3s94_A          127 DQPRAIALDPS---SGFMYWTDW--GEVPKIER--AGMDGSSRFI---IINSEIYWPNGLTLDYEEQ----KLYWADAKL  192 (619)
T ss_dssp             SCCCCEEEETT---TTEEEEEEC--SSSCEEEE--EETTSCSCEE---EECSSCSSEEEEEEETTTT----EEEEEETTT
T ss_pred             CCCceEEEecC---CCeEEEecc--CCCCEEEE--EECCCCceEE---EEeCCCCCCcEEEEEccCC----EEEEEeCCC
Confidence            45778888887   555555552  12345555  4443332222   1122334678999998763    55555443 


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-----------
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA-----------  164 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----------  164 (339)
                       .|...+++...  ......+..     ....+|++.. + .++.+-...+.|...|..+++....+..           
T Consensus       193 ~~I~~~~~dG~~--~~~~~~~~~-----~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~  263 (619)
T 3s94_A          193 NFIHKSNLDGTN--RQAVVKGSL-----PHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAF  263 (619)
T ss_dssp             CCEEEESSSCCE--EC--------------CCCEEESS-S-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEEC
T ss_pred             CeEEEecCCCCc--cEEEEeCCC-----CCceEEEEeC-C-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEE
Confidence             88888887653  111111111     2224667653 3 4555545567888888766542222110           


Q ss_pred             cC--------------CceeEEEec-C--------------------------CcEEEEEeCCCcEEEEECCCCcceeeE
Q 040307          165 HD--------------REVYDISWG-G--------------------------FNVFASVSGDCSVRVFDLRDKERSTII  203 (339)
Q Consensus       165 ~~--------------~~v~~~~~~-~--------------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~  203 (339)
                      |.              +....+++. +                          ..+|+.+ ..+.|+..++.........
T Consensus       264 ~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~  342 (619)
T 3s94_A          264 SQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIV  342 (619)
T ss_dssp             CGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEE
T ss_pred             ccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeE
Confidence            00              001111111 0                          1123322 2345666666654422222


Q ss_pred             EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307          204 YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW  283 (339)
Q Consensus       204 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw  283 (339)
                      ... ..-..+..++|++.+ ..|+.+......|+.+++.. ......+...-.....+++.+.+.++.++-+..+.|.+.
T Consensus       343 ~~~-~~l~~~~~ld~d~~~-~~ly~sD~~~~~I~r~~~~g-~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~  419 (619)
T 3s94_A          343 LQL-EDIRHAIAIDYDPVE-GYIYWTDDEVRAIRRSFIDG-SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT  419 (619)
T ss_dssp             CCC-SCCSSEEEEEEETTT-TEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             Eec-cccCccEEEEEEcCC-CeEEEEeCCCCeEEEEEcCC-CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence            111 112457889999844 44444444333388888764 222222332235677899997654566666677889988


Q ss_pred             EecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307          284 EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  326 (339)
                      ++....            ........-....+|++.|....|+
T Consensus       420 ~~~G~~------------~~~l~~~~l~~P~~iavdp~~G~ly  450 (619)
T 3s94_A          420 RLNGTM------------RKILISEDLEEPRAIVLDPMVGYMY  450 (619)
T ss_dssp             ETTSCS------------CEEEECTTCCSEEEEEEETTTTEEE
T ss_pred             eCCCCe------------EEEEEECCCCCeeeEEEEcCCCcEE
Confidence            887654            1112222334577888888643444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.84  E-value=0.0079  Score=48.86  Aligned_cols=232  Identities=13%  Similarity=0.053  Sum_probs=115.4

Q ss_pred             ccEEEEee-ec-cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C------cEEEEe
Q 040307           32 KSRLAVGS-FL-EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D------SLRLWE  102 (339)
Q Consensus        32 ~~~la~g~-~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~------~i~iw~  102 (339)
                      +.+++.|+ .. ......+.+|+  ..+........+  .....-.++. ..++     .+++.|+ +      .+.+||
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d--~~~~~W~~~~~~--p~~r~~~~~~-~~~~-----~l~v~GG~~~~~~~~~~~~~d   84 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYD--PKTQEWSFLPSI--TRKRRYVASV-SLHD-----RIYVIGGYDGRSRLSSVECLD   84 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEE--TTTTEEEECCCC--SSCCBSCEEE-EETT-----EEEEECCBCSSCBCCCEEEEE
T ss_pred             CEEEEEeCccCCCcceeEEEEEc--CCCCeEEeCCCC--ChhhccccEE-EECC-----EEEEEcCCCCCccCceEEEEE
Confidence            56777777 21 11234566654  444444331111  1111112222 2345     6777776 1      688999


Q ss_pred             ecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCeee--eeeeccCCceeEE
Q 040307          103 IHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREILE--TQLVAHDREVYDI  172 (339)
Q Consensus       103 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~--~~~~~~~~~v~~~  172 (339)
                      ..+.+   +..+..+....     ... ++...  ++.+++.|+.+     ..+.+||+.+.+-.  ..+.. ...-.++
T Consensus        85 ~~~~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~  155 (301)
T 2vpj_A           85 YTADEDGVWYSVAPMNVRR-----GLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGL  155 (301)
T ss_dssp             TTCCTTCCCEEECCCSSCC-----BSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEE
T ss_pred             CCCCCCCeeEECCCCCCCc-----cce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceE
Confidence            98877   65554433221     111 22222  56788887754     36889998876522  22211 1111222


Q ss_pred             EecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCC
Q 040307          173 SWGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRF  243 (339)
Q Consensus       173 ~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~  243 (339)
                      ...++.+++.|+.+     ..+.+||+.+.+-... ...+........+.+   ++.+++.|+.++.    .+.+||+.+
T Consensus       156 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCC
Confidence            33367777877754     4588999888753222 122112222222222   5677888876531    389999875


Q ss_pred             CCCceEEEecC-CCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          244 PTNPVVVLSKH-EGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       244 ~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                      ..  ...+... .......+..-++ ++++.|+.+     ..+.+||+....
T Consensus       232 ~~--W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          232 DS--WTTVTSMTTPRCYVGATVLRG-RLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             TE--EEEECCCSSCCBSCEEEEETT-EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             Cc--EEECCCCCCcccceeEEEECC-EEEEEcCcCCCcccccEEEEcCCCCe
Confidence            21  2222211 1111111122244 577777655     346667766543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.83  E-value=0.0099  Score=49.66  Aligned_cols=236  Identities=11%  Similarity=0.020  Sum_probs=123.5

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEEeC---
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATCSV---  144 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~---  144 (339)
                      .....++|.|++     +++++-.+ .|++++ .+++ +.+..+.. ...+ ......|+++|.   ++.+.++-+.   
T Consensus        29 ~~P~~ia~~pdG-----~l~V~e~~g~I~~~d-~~G~-~~~~~~~v-~~~g-~~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           29 EVPWSIAPLGGG-----RYLVTERPGRLVLIS-PSGK-KLVASFDV-ANVG-EAGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             SCEEEEEEEETT-----EEEEEETTTEEEEEC-SSCE-EEEEECCC-CCST-TCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             CCCeEEEEcCCC-----eEEEEeCCCEEEEEe-CCCc-eEeeccce-eecC-CCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            457899999999     88887765 888886 3333 23332220 0001 146789999982   2444444332   


Q ss_pred             C----CeEEEEECCCC-------eee-eeeec-cCCceeEEEec-CCcEEEEEeCC-------------CcEEEEECCCC
Q 040307          145 D----TTCVIWDIDRE-------ILE-TQLVA-HDREVYDISWG-GFNVFASVSGD-------------CSVRVFDLRDK  197 (339)
Q Consensus       145 d----~~v~i~d~~~~-------~~~-~~~~~-~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~i~d~~~~  197 (339)
                      +    ..|..++....       +.+ ..+.. .......+.|. ++.++++.+..             +.|.-++....
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence            3    56777776543       111 11221 11124678898 67766654321             34555554322


Q ss_pred             c-------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCC---------------CCCceEEEec
Q 040307          198 E-------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRF---------------PTNPVVVLSK  253 (339)
Q Consensus       198 ~-------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~---------------~~~~~~~~~~  253 (339)
                      -       ........  + .....++|+|.++.++++-.....  .|.+.....               ...++..+..
T Consensus       180 ~p~~npf~~~~i~a~G--~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYG--H-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             CCTTSSSTTCCEEEEC--C-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCCCCCcEEEEc--c-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            0       01111111  1 345689999856665554322211  243332111               0123334311


Q ss_pred             CCCCeeEEEec-------cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCce
Q 040307          254 HEGSVNGISWA-------PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDW  325 (339)
Q Consensus       254 ~~~~v~~~~~~-------p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l  325 (339)
                      .......++|.       .++ .++++.-..+.|...++.... .        ........ .....+..+++.|+|..+
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g-~--------~~~~~~~~~~~~~rp~~v~~~pDG~ly  326 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNM-E--------VRKISTFFKNVFGRLRDVVIDDDGGIL  326 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGG-C--------EEEEEEECTTTSCCEEEEEECTTSCEE
T ss_pred             CCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCC-c--------ccceeeeccCCCCCeeEEEECCCCcEE
Confidence            23457788884       455 466666666788888887542 0        00111122 224578999999999755


Q ss_pred             EEEe
Q 040307          326 IAIA  329 (339)
Q Consensus       326 ~~~~  329 (339)
                      ++..
T Consensus       327 v~~~  330 (354)
T 3a9g_A          327 ISTS  330 (354)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            5543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.78  E-value=0.013  Score=49.51  Aligned_cols=240  Identities=7%  Similarity=0.104  Sum_probs=155.3

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEE
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRL  100 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~i  100 (339)
                      +.--+|.   .+.+|.-.     ...++|++++...  ...    .......|.-=.|-.+.      .|+--++ .|+-
T Consensus        70 sAIMnP~---~~iiALra-----g~~lQiFnle~K~--klk----s~~~~e~VvfWkWis~~------~l~lVT~taVyH  129 (494)
T 1bpo_A           70 SAIMNPA---SKVIALKA-----GKTLQIFNIEMKS--KMK----AHTMTDDVTFWKWISLN------TVALVTDNAVYH  129 (494)
T ss_dssp             EEEECSS---SSCEEEEE-----TTEEEEEETTTTE--EEE----EEECSSCCCEEEEEETT------EEEEECSSEEEE
T ss_pred             eeeeCCC---CcEEEEec-----CCeEEEEchHHhh--hhc----ceecCCCceEEEecCCC------eEEEEcCCeeEE
Confidence            4456777   88888877     7899997766543  222    13345678888887765      5666665 9999


Q ss_pred             EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-------CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-------DTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      |+++.. ..+...+..|..-.- ..|..-..++ +.++++..+-       .|.+.+|..+.+ ..+.+.+|...-..+.
T Consensus       130 Wsi~~~-s~P~kvFdR~~~L~~-~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~  205 (494)
T 1bpo_A          130 WSMEGE-SQPVKMFDRHSSLAG-CQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK  205 (494)
T ss_dssp             EESSSS-CCCEEEEECCGGGTT-CEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEE
T ss_pred             ecccCC-CCchhheecchhccc-ceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEe
Confidence            999763 347777877654332 5666777776 7787765442       467889998655 3556677876555555


Q ss_pred             ec----CCcEEEEEeCC---CcEEEEECCCC--------cceeeE-EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307          174 WG----GFNVFASVSGD---CSVRVFDLRDK--------ERSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV  237 (339)
Q Consensus       174 ~~----~~~~l~~~~~d---~~i~i~d~~~~--------~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~  237 (339)
                      ..    +..+|+.+...   +.+++-++...        +....+ +.......-..++..++ .-..++.-+.-|. ++
T Consensus       206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~-i~  283 (494)
T 1bpo_A          206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGY-IH  283 (494)
T ss_dssp             CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSE-EE
T ss_pred             cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCce-EE
Confidence            44    13455555543   78999998654        111111 22222334567888886 6677778888888 99


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +||+.+ +.++..-+-....|..-+-+.... =++.....|.|.--.++...
T Consensus       284 lyDleT-gt~i~~nrIs~~~iF~t~~~~~~~-Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          284 LYDLET-GTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEETTT-CCEEEEEECCSSCEEEEEEETTTT-EEEEEETTCEEEEEEECTTT
T ss_pred             EEeccc-ceeeeeecccCCceEEecccCCCC-cEEEEccCceEEEEEEcccc
Confidence            999998 666766665566666555554432 34455577877777666654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.76  E-value=0.013  Score=48.91  Aligned_cols=233  Identities=12%  Similarity=0.059  Sum_probs=115.6

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE--eecCCCCceEEEEcCC---CCCCCCCeEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL--IFDHPYTPTNIAFFPS---EETLNPDIVA   92 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~---~~~~~~~~la   92 (339)
                      .....++|.|+   +.++++ .    ..+.|.+++ +   ........+  ..........|+|+|+   +.    .+++
T Consensus        31 ~~P~~ia~~pd---G~l~V~-e----~~g~I~~i~-~---g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g----~lYv   94 (352)
T 2ism_A           31 EVPWALAFLPD---GGMLIA-E----RPGRIRLFR-E---GRLSTYAELSVYHRGESGLLGLALHPRFPQEP----YVYA   94 (352)
T ss_dssp             SCEEEEEECTT---SCEEEE-E----TTTEEEEEE-T---TEEEEEEECCCCCSTTCSEEEEEECTTTTTSC----EEEE
T ss_pred             CCceEEEEcCC---CeEEEE-e----CCCeEEEEE-C---CCccEeecceEeecCCCCceeEEECCCCCCCC----EEEE
Confidence            45779999999   885555 4    369999865 2   222110011  0122456899999998   31    5555


Q ss_pred             EeC-------CcEEEEeecCCcce----eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-------------CCeE
Q 040307           93 TSG-------DSLRLWEIHDDRTE----LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-------------DTTC  148 (339)
Q Consensus        93 ~~~-------~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------d~~v  148 (339)
                      +-.       ..|..++.......    ....+.......  .....++|.| ++.+.++.+.             .|.|
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~--h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I  171 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGL--HSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKI  171 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCC--CCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEE
T ss_pred             EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCC--cCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEE
Confidence            543       35667776644211    111122101111  2235899998 8877666432             2566


Q ss_pred             EEEECCCC------------eeeeee-eccCCceeEEEecC--CcEEEEEeCCCcE------EEEECCCCcc--------
Q 040307          149 VIWDIDRE------------ILETQL-VAHDREVYDISWGG--FNVFASVSGDCSV------RVFDLRDKER--------  199 (339)
Q Consensus       149 ~i~d~~~~------------~~~~~~-~~~~~~v~~~~~~~--~~~l~~~~~d~~i------~i~d~~~~~~--------  199 (339)
                      .-++....            .....+ .++. ....++|++  +.++++-.....+      .+.-+..+..        
T Consensus       172 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g  250 (352)
T 2ism_A          172 LRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVG  250 (352)
T ss_dssp             EEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCS
T ss_pred             EEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccC
Confidence            66665420            011111 1232 346778883  4444443333321      1222222210        


Q ss_pred             -------eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-----eEEEecCCCCeeEEEeccCC
Q 040307          200 -------STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-----VVVLSKHEGSVNGISWAPLY  267 (339)
Q Consensus       200 -------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-----~~~~~~~~~~v~~~~~~p~~  267 (339)
                             ........ +......++|.  ++.++++.-..+. |...++......     ...+......+..+++.|+|
T Consensus       251 ~~~~~~~~~p~~~~~-~~~ap~G~~~~--~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG  326 (352)
T 2ism_A          251 RGNDPRYRDPLYFWP-QGFPPGNLAFF--RGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG  326 (352)
T ss_dssp             CCCCTTSCCCSEECT-TCCCEEEEEEE--TTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS
T ss_pred             CCCCCCCcCCeEecC-CCCCCcceEEE--CCEEEEEECCCCE-EEEEEECCCCcceeecchheecccCCCeeEEEECCCC
Confidence                   00001111 12345677773  5665554433344 777777643321     12222223578999999999


Q ss_pred             CCeEEEEe
Q 040307          268 GRRLCSVA  275 (339)
Q Consensus       268 ~~~l~~~~  275 (339)
                      . ++++..
T Consensus       327 ~-lyv~~~  333 (352)
T 2ism_A          327 A-LYVTTS  333 (352)
T ss_dssp             C-EEEEEC
T ss_pred             c-EEEEEe
Confidence            4 555543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.74  E-value=0.022  Score=51.03  Aligned_cols=63  Identities=14%  Similarity=0.116  Sum_probs=36.0

Q ss_pred             CcEEEEECCCCcceeeEEeCCCCC-------CCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          187 CSVRVFDLRDKERSTIIYENPVQD-------CPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      +.|..+|.++++..=. +....+.       ....-+.....++   ..++.++.++. ++++|.++ ++++....
T Consensus       291 ~~v~AlD~~TG~~~W~-~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~t-G~~lw~~~  363 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWF-YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF-FYVVDRSN-GKLQNAFP  363 (582)
T ss_dssp             SEEEEECTTTCCEEEE-EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE-EEEEETTT-CCEEEEEE
T ss_pred             ceEEEEeCCCCCEEEE-EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce-EEEEECCC-CCEecccc
Confidence            5799999999884433 2221121       1111122210255   36777888888 99999877 55554443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.69  E-value=0.011  Score=48.09  Aligned_cols=228  Identities=11%  Similarity=0.035  Sum_probs=115.4

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC------CcEEEEeecC
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG------DSLRLWEIHD  105 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~------~~i~iw~~~~  105 (339)
                      +.+++.|+..  ..+.+.+||  ...........+  .....-.++.. -++     .+++.|+      +.+.+||..+
T Consensus        12 ~~l~~~GG~~--~~~~~~~~d--~~~~~W~~~~~~--p~~r~~~~~~~-~~~-----~lyv~GG~~~~~~~~~~~~d~~~   79 (306)
T 3ii7_A           12 DYRIALFGGS--QPQSCRYFN--PKDYSWTDIRCP--FEKRRDAACVF-WDN-----VVYILGGSQLFPIKRMDCYNVVK   79 (306)
T ss_dssp             CEEEEEECCS--STTSEEEEE--TTTTEEEECCCC--SCCCBSCEEEE-ETT-----EEEEECCBSSSBCCEEEEEETTT
T ss_pred             ceEEEEeCCC--CCceEEEec--CCCCCEecCCCC--CcccceeEEEE-ECC-----EEEEEeCCCCCCcceEEEEeCCC
Confidence            4466677621  145666644  444444431122  11111122222 355     6777776      2788899988


Q ss_pred             CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCCCeeee--eeeccCCceeEEEecCC
Q 040307          106 DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDREILET--QLVAHDREVYDISWGGF  177 (339)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~  177 (339)
                      .++..+..+....     .....+.+   ++.+++.|+.+      ..+.+||+.+.+-..  .+... ..-.++...++
T Consensus        80 ~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~  150 (306)
T 3ii7_A           80 DSWYSKLGPPTPR-----DSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMVEANG  150 (306)
T ss_dssp             TEEEEEECCSSCC-----BSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETT
T ss_pred             CeEEECCCCCccc-----cceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEEEEECC
Confidence            8765554433221     11122222   56788888765      468899998765221  11111 11122233357


Q ss_pred             cEEEEEeC---------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCC
Q 040307          178 NVFASVSG---------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFP  244 (339)
Q Consensus       178 ~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~  244 (339)
                      .+++.|+.         -..+.+||+.+.+-... ...+..... .+++..  ++++++.|+.++.    .+.+||....
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEEC-CCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            77777764         34588999988753222 122111122 223332  5677777776431    2889998752


Q ss_pred             CCceEEEec---CCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          245 TNPVVVLSK---HEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       245 ~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                      .  -..+..   .......+.+  ++ ++++.|+.+     ..+.+||+....
T Consensus       227 ~--W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          227 E--WKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             E--EEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             c--EEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            1  222211   1111222222  44 577788754     457777776644

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.65  E-value=0.01  Score=48.42  Aligned_cols=231  Identities=13%  Similarity=0.058  Sum_probs=113.2

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-----------cEEE
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-----------SLRL  100 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-----------~i~i  100 (339)
                      +.+++.|+.....-..+.+|+  ...........+  .....-.++... ++     .+++.|+.           .+.+
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d--~~~~~W~~~~~~--p~~r~~~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~~~~   94 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYN--PSNGTWLRLADL--QVPRSGLAGCVV-GG-----LLYAVGGRNNSPDGNTDSSALDC   94 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEE--TTTTEEEECCCC--SSCCBSCEEEEE-TT-----EEEEECCEEEETTEEEECCCEEE
T ss_pred             CEEEEEeCcCCCCcceEEEEc--CCCCeEeECCCC--CcccccceEEEE-CC-----EEEEECCCcCCCCCCeecceEEE
Confidence            667788874222234566644  444444431111  111111223322 45     67766651           5888


Q ss_pred             EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCeeee--eeeccCCceeEEE
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREILET--QLVAHDREVYDIS  173 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~--~~~~~~~~v~~~~  173 (339)
                      ||+.+.++..+..+....     .....+.+   ++.+++.|+.+     ..+.+||+.+.+-..  .+...... .++.
T Consensus        95 ~d~~~~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~  165 (308)
T 1zgk_A           95 YNPMTNQWSPCAPMSVPR-----NRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVA  165 (308)
T ss_dssp             EETTTTEEEECCCCSSCC-----BTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred             ECCCCCeEeECCCCCcCc-----cccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEE
Confidence            888887655443333211     11222222   56777777643     468889987765221  11111111 1222


Q ss_pred             ecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC----CeEEEEecCCC
Q 040307          174 WGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS----NKVVVLDIRFP  244 (339)
Q Consensus       174 ~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~----~~i~i~d~~~~  244 (339)
                      ..++.+++.|+.+     ..+.+||+.+.+-... ...+...... +++..  ++.+++.|+.++    ..+.+||+...
T Consensus       166 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          166 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGA-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccc-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            3367777777754     4588999887652221 1111122222 22332  667777777652    13899998752


Q ss_pred             CCceEEEecCCC--CeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          245 TNPVVVLSKHEG--SVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       245 ~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                      .  ...+.....  .-.+++. -++ ++++.|+.+     ..+.+||+....
T Consensus       242 ~--W~~~~~~p~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          242 T--WTFVAPMKHRRSALGITV-HQG-RIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             E--EEECCCCSSCCBSCEEEE-ETT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             c--EEECCCCCCCccceEEEE-ECC-EEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1  222211111  1112222 244 577777644     346666665543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.63  E-value=0.018  Score=46.89  Aligned_cols=183  Identities=10%  Similarity=0.021  Sum_probs=97.3

Q ss_pred             CeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeee-
Q 040307           89 DIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILE-  159 (339)
Q Consensus        89 ~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~-  159 (339)
                      .+++.|+.    .+.+||..+.++..+..+....     .....+.+   ++.+++.|+.+    ..+.+||+.+.+-. 
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~   84 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR-----RDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYS   84 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC-----BSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCccc-----ceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence            46666652    8999999988755544333221     12222222   56788888765    67889999877522 


Q ss_pred             -eeeeccCCceeEEEecCCcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          160 -TQLVAHDREVYDISWGGFNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       160 -~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                       ..+...... .++...++.+++.|+.+      ..+.+||+.+.+-... ...+....... ++..  ++++++.|+.+
T Consensus        85 ~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~-~~~~--~~~iyv~GG~~  159 (306)
T 3ii7_A           85 KLGPPTPRDS-LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHG-MVEA--NGLIYVCGGSL  159 (306)
T ss_dssp             EECCSSCCBS-CEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCE-EEEE--TTEEEEECCEE
T ss_pred             CCCCCccccc-eeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeE-EEEE--CCEEEEECCCC
Confidence             122111111 12222367788888765      4688999988753222 22211112222 2222  56777777643


Q ss_pred             ---------CCeEEEEecCCCCCceEEEecCCC-C-eeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          233 ---------SNKVVVLDIRFPTNPVVVLSKHEG-S-VNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       233 ---------~~~i~i~d~~~~~~~~~~~~~~~~-~-v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                               .. +.+||..+.  ....+..... . -.++... ++ ++++.|+.+     ..+.+||+....
T Consensus       160 ~~~~~~~~~~~-~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          160 GNNVSGRVLNS-CEVYDPATE--TWTELCPMIEARKNHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             SCTTTCEECCC-EEEEETTTT--EEEEECCCSSCCBSCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCCcccccce-EEEeCCCCC--eEEECCCccchhhcceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence                     33 888998762  1222221111 1 1122222 44 577777643     357788877643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.61  E-value=0.029  Score=48.77  Aligned_cols=245  Identities=10%  Similarity=-0.008  Sum_probs=135.3

Q ss_pred             CeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeec--CCCCceEEEE-------cCCCCCCCC
Q 040307           19 PISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFD--HPYTPTNIAF-------FPSEETLNP   88 (339)
Q Consensus        19 ~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~-------~~~~~~~~~   88 (339)
                      ....|+|.| +   ...|.++..   ..+.|++  ++.++..+..  ....+  .......++|       ++++     
T Consensus       140 ~p~~la~dp~~---~~~Lyv~~~---~~~~i~~--ID~~~~~v~~--l~~~~~~~~~~p~~ia~~~~~~~~d~~G-----  204 (496)
T 3kya_A          140 DNGRLAFDPLN---KDHLYICYD---GHKAIQL--IDLKNRMLSS--PLNINTIPTNRIRSIAFNKKIEGYADEA-----  204 (496)
T ss_dssp             SEEEEEEETTE---EEEEEEEEE---TEEEEEE--EETTTTEEEE--EECCTTSSCSBEEEEEECCCBTTTBCTT-----
T ss_pred             CCCEEEEccCC---CCEEEEEEC---CCCeEEE--EECCCCEEEE--EEccCccccCCCcEEEEeecccccCCCC-----
Confidence            467889998 4   444555441   3455666  6666655553  11111  1235899999       9999     


Q ss_pred             C-eEEEeCC--------cEEEEeecC-Cccee---EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-
Q 040307           89 D-IVATSGD--------SLRLWEIHD-DRTEL---KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-  154 (339)
Q Consensus        89 ~-~la~~~~--------~i~iw~~~~-~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-  154 (339)
                      + ++++...        .|.+.+... +.+..   ...+...      .....++.+|.++.++++-..++.|..+|+. 
T Consensus       205 ~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~  278 (496)
T 3kya_A          205 EYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY------KQCNGATIHPINGELYFNSYEKGQVFRLDLVD  278 (496)
T ss_dssp             CEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE------SCCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred             CEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC------CCceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence            6 5555432        255665333 22210   0122211      2345788898556666677778899999987 


Q ss_pred             ------CCee-----------eeee-e-ccCCceeEEEec-CCcE-EEEEeCCCcEEEEECCCCcc----eeeEEeCCCC
Q 040307          155 ------REIL-----------ETQL-V-AHDREVYDISWG-GFNV-FASVSGDCSVRVFDLRDKER----STIIYENPVQ  209 (339)
Q Consensus       155 ------~~~~-----------~~~~-~-~~~~~v~~~~~~-~~~~-l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~  209 (339)
                            ++..           ...+ . ......+.++|+ +++. +++-.....|+.+|......    +..+......
T Consensus       279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~  358 (496)
T 3kya_A          279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ  358 (496)
T ss_dssp             HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred             ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence                  4443           1121 1 123346789999 6774 44545667888866543221    1111111000


Q ss_pred             C------------CCeE-EEEEec------CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------------
Q 040307          210 D------------CPLL-RLEWNK------ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE---------------  255 (339)
Q Consensus       210 ~------------~~v~-~~~~~p------~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------------  255 (339)
                      .            .... .++...      .++.++++-..+.. |+.++..  + .+.++.+..               
T Consensus       359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~~~--G-~v~TiaG~g~~~~~~~~~~~G~~d  434 (496)
T 3kya_A          359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC-VRKVTPE--G-IVSTYAGRGASTSLADGNQWGTDD  434 (496)
T ss_dssp             CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE-EEEECTT--C-BEEEEEESCTTHHHHHSCSCCCCC
T ss_pred             CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE-EEEEeCC--C-CEEEEecccccccccCccccccCC
Confidence            0            1234 344431      14555555444555 9999832  3 355554320               


Q ss_pred             ---------CCeeEEEeccC-CCCeEEEEeCCCcEEEEEecCCC
Q 040307          256 ---------GSVNGISWAPL-YGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       256 ---------~~v~~~~~~p~-~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                               .....|+++++ + .++++=..+.+|+.++++...
T Consensus       435 G~~~~~a~f~~P~gIavd~~~g-~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          435 GDLREVARFRDVSGLVYDDVKE-MFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             EETTTTCCCSSEEEEEEETTTT-EEEEEETTTTEEEEEEECCCC
T ss_pred             CCchhhhhcCCCcEEEEECCCC-EEEEEeCCCCEEEEEECCCCc
Confidence                     13568999997 6 466666677889999988765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.61  E-value=0.015  Score=47.14  Aligned_cols=184  Identities=10%  Similarity=0.003  Sum_probs=96.6

Q ss_pred             CeEEEeC----C----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCC
Q 040307           89 DIVATSG----D----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDR  155 (339)
Q Consensus        89 ~~la~~~----~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~  155 (339)
                      .+++.|+    +    .+.+||+.+.++..+..+....     ... ++...  ++.+++.|+.+     ..+.+||+.+
T Consensus        16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~   87 (301)
T 2vpj_A           16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR-----RYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYTA   87 (301)
T ss_dssp             EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC-----BSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTC
T ss_pred             EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh-----ccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECCC
Confidence            5777766    1    7889998887654443332211     111 22222  56788888765     4688999877


Q ss_pred             Ce---e--eeeeeccCCceeEEEecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          156 EI---L--ETQLVAHDREVYDISWGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       156 ~~---~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      .+   -  +..+...... .++...++.+++.|+.+     ..+.+||+.+.+-... ...+...... +++..  ++++
T Consensus        88 ~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~i  162 (301)
T 2vpj_A           88 DEDGVWYSVAPMNVRRGL-AGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML-GDMQTAREGA-GLVVA--SGVI  162 (301)
T ss_dssp             CTTCCCEEECCCSSCCBS-CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE-EECSSCCBSC-EEEEE--TTEE
T ss_pred             CCCCeeEECCCCCCCccc-eeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEEC-CCCCCCcccc-eEEEE--CCEE
Confidence            65   1  1112111111 22223367777777654     3588899887763322 2222222222 22222  6677


Q ss_pred             EEEEeeCCC----eEEEEecCCCCCceEEEecCCCC-e-eEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          226 MATVGMDSN----KVVVLDIRFPTNPVVVLSKHEGS-V-NGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       226 l~~~~~d~~----~i~i~d~~~~~~~~~~~~~~~~~-v-~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                      ++.|+.++.    .+.+||..+..  ...+.....+ . .++.. -++ ++++.|+.+     ..+.+||+.+..
T Consensus       163 yv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          163 YCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVAL-LND-HIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEE-ECC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence            777776531    38899987521  2222211111 1 11222 244 577777754     468888887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.41  E-value=0.037  Score=45.24  Aligned_cols=185  Identities=10%  Similarity=0.000  Sum_probs=94.4

Q ss_pred             CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----C------CeEEEEECCCCe
Q 040307           89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----D------TTCVIWDIDREI  157 (339)
Q Consensus        89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d------~~v~i~d~~~~~  157 (339)
                      .+++.|++.+.+||..++++.. ..+.....    ..-.+++.  .++.+++.|+.     .      ..+.+||..+.+
T Consensus         6 ~l~~~GG~~~~~yd~~~~~W~~-~~~~~p~~----r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   78 (315)
T 4asc_A            6 LIFMISEEGAVAYDPAANECYC-ASLSSQVP----KNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE   78 (315)
T ss_dssp             EEEEEETTEEEEEETTTTEEEE-EECCCCSC----SSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred             EEEEEcCCceEEECCCCCeEec-CCCCCCCC----ccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence            4566677799999999987543 22222110    12223333  26788888874     1      137788988765


Q ss_pred             eeeeeeccCCc--eeEEEecCCcEEEEEeCC--------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307          158 LETQLVAHDRE--VYDISWGGFNVFASVSGD--------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA  227 (339)
Q Consensus       158 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  227 (339)
                      - ..+.....+  -.+++..++.+++.|+.+        ..+.+||+.+.+-... ...+....... ++..  ++++++
T Consensus        79 W-~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~-~~~~--~~~iyv  153 (315)
T 4asc_A           79 W-LGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYVVYGHT-VLSH--MDLVYV  153 (315)
T ss_dssp             E-EECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSCCBSCE-EEEE--TTEEEE
T ss_pred             E-EECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCccccee-EEEE--CCEEEE
Confidence            2 222111111  112223357777777742        4588999987652211 11111222222 2222  667778


Q ss_pred             EEee-CC----CeEEEEecCCCCCceEEEecCC-CCe-eEEEeccCCCCeEEEEeCCC-----cEEEEEecCCC
Q 040307          228 TVGM-DS----NKVVVLDIRFPTNPVVVLSKHE-GSV-NGISWAPLYGRRLCSVADDS-----RALIWEVVGPG  289 (339)
Q Consensus       228 ~~~~-d~----~~i~i~d~~~~~~~~~~~~~~~-~~v-~~~~~~p~~~~~l~~~~~dg-----~v~iwd~~~~~  289 (339)
                      .|+. ++    ..+.+||..+..  -..+.... ... .+++. -++ ++++.|+.++     .+.+||+.+..
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATV-HDG-RIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEE-ECC-EEEEEeccCCCCccceEEEEECCCCe
Confidence            8876 21    138899987521  12221111 111 12222 244 5777777554     46777776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.41  E-value=0.041  Score=45.81  Aligned_cols=234  Identities=9%  Similarity=-0.018  Sum_probs=111.6

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeec-CCCCceEEEEcCCCCCCCCCeEEEeCC------------cE
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFD-HPYTPTNIAFFPSEETLNPDIVATSGD------------SL   98 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~la~~~~------------~i   98 (339)
                      +.+++.|+.   ..+.+.+|+.............+  . ....-.+++.. ++     ++++.|+.            .+
T Consensus        20 ~~iyv~GG~---~~~~~~~~d~~~~~~~W~~~~~~--p~~~R~~~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~~v   88 (357)
T 2uvk_A           20 DTVYIGLGS---AGTAWYKLDTQAKDKKWTALAAF--PGGPRDQATSAFI-DG-----NLYVFGGIGKNSEGLTQVFNDV   88 (357)
T ss_dssp             TEEEEECGG---GTTCEEEEETTSSSCCEEECCCC--TTCCCBSCEEEEE-TT-----EEEEECCEEECTTSCEEECCCE
T ss_pred             CEEEEEeCc---CCCeEEEEccccCCCCeeECCCC--CCCcCccceEEEE-CC-----EEEEEcCCCCCCCccceeeccE
Confidence            777788874   34567776655323444431121  1 11111222222 45     66666542            58


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------------------------------
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------------------------------  145 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------------------------------  145 (339)
                      .+||+.+.++..+..+....   . .....+.+   ++++++.|+.+                                 
T Consensus        89 ~~yd~~~~~W~~~~~~~p~~---r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (357)
T 2uvk_A           89 HKYNPKTNSWVKLMSHAPMG---M-AGHVTFVH---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA  161 (357)
T ss_dssp             EEEETTTTEEEECSCCCSSC---C-SSEEEEEE---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred             EEEeCCCCcEEECCCCCCcc---c-ccceEEEE---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence            88898888755544433111   0 12222222   67888888864                                 


Q ss_pred             ------CeEEEEECCCCee--eeeeeccCCceeEEEecCCcEEEEEeC------CCcEEEEEC--CCCcceeeEEeCCCC
Q 040307          146 ------TTCVIWDIDREIL--ETQLVAHDREVYDISWGGFNVFASVSG------DCSVRVFDL--RDKERSTIIYENPVQ  209 (339)
Q Consensus       146 ------~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~  209 (339)
                            ..+.+||+.+.+-  +..+......-.++...++.+++.|+.      ...+..||+  .+.+- ..+...+..
T Consensus       162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~  240 (357)
T 2uvk_A          162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSP  240 (357)
T ss_dssp             GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTT
T ss_pred             cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCC
Confidence                  5789999987652  222211111112334446777777764      345777877  43331 111111111


Q ss_pred             CCC-eEEEEEecCCCCeEEEEeeCC---------------------CeEEEEecCCCC-CceEEEecCCCCeeEEEeccC
Q 040307          210 DCP-LLRLEWNKADPRFMATVGMDS---------------------NKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPL  266 (339)
Q Consensus       210 ~~~-v~~~~~~p~~~~~l~~~~~d~---------------------~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~  266 (339)
                      ... -.+++..  ++.+++.|+.+.                     ..+.+||+.... ..+..+..  ......+..-+
T Consensus       241 ~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~  316 (357)
T 2uvk_A          241 DGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ--GRAYGVSLPWN  316 (357)
T ss_dssp             TCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS--CCBSSEEEEET
T ss_pred             cccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC--CcccceeEEeC
Confidence            111 1123332  667777777431                     127889987522 11112221  11112223345


Q ss_pred             CCCeEEEEeCCC------cEEEEEecCCC
Q 040307          267 YGRRLCSVADDS------RALIWEVVGPG  289 (339)
Q Consensus       267 ~~~~l~~~~~dg------~v~iwd~~~~~  289 (339)
                      + ++++.|+.++      .|.+++++..+
T Consensus       317 ~-~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          317 N-SLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             T-EEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             C-EEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            5 5778887542      35555776655

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.41  E-value=0.037  Score=46.70  Aligned_cols=146  Identities=14%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--C-CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--P-YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR  107 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~-~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~  107 (339)
                      +..++++.     ++.||..++..+. .++   .+...+  . ..|..+..+|+|     ++||..+. .|.|-.+..+.
T Consensus        32 ~t~i~~a~-----~n~iR~~~i~~~~-~Yk---~L~~~~~i~f~~i~qlvlSpsG-----~lLAl~g~~~V~Vv~LP~~~   97 (452)
T 3pbp_A           32 GTRIVFIQ-----DNIIRWYNVLTDS-LYH---SLNFSRHLVLDDTFHVISSTSG-----DLLCLFNDNEIFVMEVPWGY   97 (452)
T ss_dssp             TTEEEEEE-----TTEEEEEETTTCS-SCE---EEECTTTCCCCTTCEEEECTTS-----SEEEEECSSEEEEEECCTTC
T ss_pred             CCEEEEEE-----CCEEEEEECCCCC-cce---EEecCcccccCceeEEEECCCC-----CEEEEecCCeEEEEEecCcc
Confidence            66777777     7899997776543 222   232332  2 368899999999     89999987 99998887432


Q ss_pred             c----------eeEEEeecCCCc-cCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCe--eeeeee---------
Q 040307          108 T----------ELKSLLNSNKTS-EFSSAITSFDWAGF--DTRRVATCSVDTTCVIWDIDREI--LETQLV---------  163 (339)
Q Consensus       108 ~----------~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~---------  163 (339)
                      .          .....+.-.... ....+|..+.|+|.  .+..|++-..|+.|++||+....  +. .++         
T Consensus        98 ~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d  176 (452)
T 3pbp_A           98 SNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLD  176 (452)
T ss_dssp             SCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESC
T ss_pred             ccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCC
Confidence            0          111223221100 01268999999984  34589999999999999997522  22 221         


Q ss_pred             ccCCceeEEEec-CCcEEEEEe--CCCcEEEE
Q 040307          164 AHDREVYDISWG-GFNVFASVS--GDCSVRVF  192 (339)
Q Consensus       164 ~~~~~v~~~~~~-~~~~l~~~~--~d~~i~i~  192 (339)
                      .....|.+++|. ++-.|...+  ..|.|+-.
T Consensus       177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            122568889998 555555544  66766643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.39  E-value=0.044  Score=45.55  Aligned_cols=141  Identities=13%  Similarity=0.071  Sum_probs=79.4

Q ss_pred             CCCcEEEEECCCC--cceeeEEeC---CCCCCCeEEEEEecC-CCC-eEEEEeeC--CCeEEEEecCCCCCceE---EEe
Q 040307          185 GDCSVRVFDLRDK--ERSTIIYEN---PVQDCPLLRLEWNKA-DPR-FMATVGMD--SNKVVVLDIRFPTNPVV---VLS  252 (339)
Q Consensus       185 ~d~~i~i~d~~~~--~~~~~~~~~---~~~~~~v~~~~~~p~-~~~-~l~~~~~d--~~~i~i~d~~~~~~~~~---~~~  252 (339)
                      .+|.|.++|+.+.  +........   .........+.+.++ ++. +|+++...  +..+.+|++........   .+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999999843  222221221   112346778887652 333 44444332  33488988876433222   222


Q ss_pred             cC-CCCeeEEEeccCCCCeEEEEe---CC------------CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEE
Q 040307          253 KH-EGSVNGISWAPLYGRRLCSVA---DD------------SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVV  316 (339)
Q Consensus       253 ~~-~~~v~~~~~~p~~~~~l~~~~---~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  316 (339)
                      +. -...+.+.+.++| .+.++..   .|            ..=.+|.+...+             .......-...+.+
T Consensus       161 g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-------------~~~~~~~l~~pNGi  226 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-------------VRVVAEGFDFANGI  226 (355)
T ss_dssp             CTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-------------CEEEEEEESSEEEE
T ss_pred             cCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCe-------------EEEeecCCcccCcc
Confidence            21 2357899999998 4666654   11            223444444433             22233334457899


Q ss_pred             EecCCCCceEEE-ecCCeEEEEeC
Q 040307          317 RWSPLELDWIAI-AFVNKLQLLKV  339 (339)
Q Consensus       317 ~~~p~~~~l~~~-~~d~~v~~w~v  339 (339)
                      +|+||++.++.+ +..+.|..|++
T Consensus       227 a~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          227 NISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             eECCCCCEEEEEeCCCCeEEEEEE
Confidence            999999876644 56778887763

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.38  E-value=0.041  Score=44.96  Aligned_cols=133  Identities=11%  Similarity=-0.033  Sum_probs=70.9

Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------CeEEEEECCCCee--eeeeeccCC
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------TTCVIWDIDREIL--ETQLVAHDR  167 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~--~~~~~~~~~  167 (339)
                      +.+||..+.++..+..+....     ... +++..  ++.+++.|+.+        ..+.+||+.+.+-  +..+.... 
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-  139 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPR-----CLF-GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV-  139 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCE-----ESC-EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC-
T ss_pred             eEEecCCCCeEEECCCCCcch-----hce-eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc-
Confidence            778888877654443332211     111 22222  56777777742        4688999987652  11121111 


Q ss_pred             ceeEEEecCCcEEEEEeC-C-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEE
Q 040307          168 EVYDISWGGFNVFASVSG-D-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVV  237 (339)
Q Consensus       168 ~v~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~  237 (339)
                      .-.++...++.+++.|+. +     ..+.+||+.+.+-... ...+........+.+   ++++++.|+.++.    .+.
T Consensus       140 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~  215 (315)
T 4asc_A          140 YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAE  215 (315)
T ss_dssp             BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEE
T ss_pred             cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC-CCCCCchhceEEEEE---CCEEEEEeccCCCCccceEE
Confidence            112233335777788776 2     4688999987752221 111111122222222   6678888877653    388


Q ss_pred             EEecCC
Q 040307          238 VLDIRF  243 (339)
Q Consensus       238 i~d~~~  243 (339)
                      +||..+
T Consensus       216 ~yd~~~  221 (315)
T 4asc_A          216 VYSITD  221 (315)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            888875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.35  E-value=0.042  Score=44.52  Aligned_cols=184  Identities=11%  Similarity=0.083  Sum_probs=95.0

Q ss_pred             CeEEEeC------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCe
Q 040307           89 DIVATSG------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREI  157 (339)
Q Consensus        89 ~~la~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~  157 (339)
                      .+++.|+      +.+..||+.+.++..+..+....     ..- +++..  ++.+++.|+.+     ..+.+||..+.+
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR-----CRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC-----BSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc-----ccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCc
Confidence            5666665      16888998887654443332211     111 22222  56788888755     358899988765


Q ss_pred             ee--eeeeccCCceeEEEecCCcEEEEEeCCC-----cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307          158 LE--TQLVAHDREVYDISWGGFNVFASVSGDC-----SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       158 ~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                      -.  ..+...... .+++..++.+++.|+.++     .+.+||+.+.+-... ...+...... +++..  ++++++.|+
T Consensus        89 W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG  163 (302)
T 2xn4_A           89 WTSVANMRDRRST-LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSV-GVGVV--GGLLYAVGG  163 (302)
T ss_dssp             EEEECCCSSCCBS-CEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE--TTEEEEECC
T ss_pred             eeeCCCCCccccc-eEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCc-eEEEE--CCEEEEEeC
Confidence            21  112111111 223333677888887653     477889887653222 1221122222 22332  567777776


Q ss_pred             eCCC------eEEEEecCCCCCceEEEecCCC--CeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          231 MDSN------KVVVLDIRFPTNPVVVLSKHEG--SVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       231 ~d~~------~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                      .++.      .+.+||.....  -..+.....  .-.+++. -++ ++++.|+.+     ..+.+||+.+..
T Consensus       164 ~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          164 YDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGV-LNN-LLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETT-EEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEE-ECC-EEEEECCCCCCcccceEEEEeCCCCC
Confidence            5321      28889987521  222211111  1112222 244 577777754     367888876644

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.33  E-value=0.049  Score=44.85  Aligned_cols=182  Identities=12%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             eEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCC---EEEEEeC---CCeEEEEEC--CCCe
Q 040307           90 IVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTR---RVATCSV---DTTCVIWDI--DREI  157 (339)
Q Consensus        90 ~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~---~l~~~~~---d~~v~i~d~--~~~~  157 (339)
                      +|++.-. .+.+||+ +++  .+..+..       +.++.+..-|.   .++   ++++...   +++|.+|++  .+++
T Consensus        43 ii~t~k~~gL~Vydl-~G~--~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           43 LITTNKKSGLVVYSL-DGK--MLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             EEEEETTTEEEEEET-TSC--EEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             EEEEcCCCCEEEEcC-CCc--EEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            3334334 9999999 554  5555654       45666666540   111   2333333   578999977  3333


Q ss_pred             eeeeeec------cC-CceeEEEe--cC--Cc-EEEEEeCCCcEEEEECCC---Ccc---eeeEEeCCCCCCCeEEEEEe
Q 040307          158 LETQLVA------HD-REVYDISW--GG--FN-VFASVSGDCSVRVFDLRD---KER---STIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       158 ~~~~~~~------~~-~~v~~~~~--~~--~~-~l~~~~~d~~i~i~d~~~---~~~---~~~~~~~~~~~~~v~~~~~~  219 (339)
                       +..+..      .. ..+..+++  ++  +. ++++...+|.+..|++..   +..   ....+..   ...+-.+...
T Consensus       113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvD  188 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAAD  188 (355)
T ss_dssp             -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEE
T ss_pred             -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEc
Confidence             444411      11 45667777  42  33 677888889999999843   211   1122222   3578889998


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCC----CceEEEe-cC-CCCeeEEEe--ccCCCCeEEEEe-CCCcEEEEEecC
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPT----NPVVVLS-KH-EGSVNGISW--APLYGRRLCSVA-DDSRALIWEVVG  287 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~----~~~~~~~-~~-~~~v~~~~~--~p~~~~~l~~~~-~dg~v~iwd~~~  287 (339)
                      + ....|+.+-++.. |..++.+...    ..+..+. ++ ...+..|+.  .+++..+|++++ .++++.+||...
T Consensus       189 d-~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          189 D-EYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             T-TTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             C-CCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            7 7778888888876 7777755321    1232221 11 236788888  455532454444 778999999973

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.31  E-value=0.029  Score=47.37  Aligned_cols=153  Identities=7%  Similarity=0.041  Sum_probs=91.7

Q ss_pred             CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC--CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---C----
Q 040307          176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV--QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT---N----  246 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---~----  246 (339)
                      ++..++.+- ++.||.-++..... ......+.  .-..+..+..+| +|++||..+...  |.|..+..+.   .    
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~-Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~~--V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSL-YHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDNE--IFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSS-CEEEECTTTCCCCTTCEEEECT-TSSEEEEECSSE--EEEEECCTTCSCCCCHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCc-ceEEecCcccccCceeEEEECC-CCCEEEEecCCe--EEEEEecCccccCccccc
Confidence            444444443 46777777764432 22233321  123678899998 999999987664  8888886322   1    


Q ss_pred             --c--eEEEec------CCCCeeEEEeccCCC--CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307          247 --P--VVVLSK------HEGSVNGISWAPLYG--RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN  314 (339)
Q Consensus       247 --~--~~~~~~------~~~~v~~~~~~p~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  314 (339)
                        +  .+.+.-      ...+|..+.|+|-+.  ..|++-..|+.|++||+......|......  ...+........|.
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~--~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKP--NNSFGLDARVNDIT  183 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCC--CSEEESCSSCCCEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcc--ccccCCCcccceEE
Confidence              0  112222      246799999999752  389999999999999999844222200000  00001111235689


Q ss_pred             EEEecCCCCceEEEe--cCCeEE
Q 040307          315 VVRWSPLELDWIAIA--FVNKLQ  335 (339)
Q Consensus       315 ~~~~~p~~~~l~~~~--~d~~v~  335 (339)
                      +++|.+++-.|.+.+  .+|-|+
T Consensus       184 S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          184 DLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             EEEECTTSSCEEEEECTTSCEEE
T ss_pred             EEEEcCCCcEEEEEecCCCCCEE
Confidence            999999776666644  666664

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.26  E-value=0.16  Score=49.36  Aligned_cols=172  Identities=9%  Similarity=0.016  Sum_probs=100.7

Q ss_pred             eEEEEECCCCeeeeeeec-cCCceeEEE---ec--CCcEEEEEe----------CCCcEEEEECCCCcceeeEEeCCCCC
Q 040307          147 TCVIWDIDREILETQLVA-HDREVYDIS---WG--GFNVFASVS----------GDCSVRVFDLRDKERSTIIYENPVQD  210 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~-~~~~v~~~~---~~--~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~  210 (339)
                      .|++.|..+.+.+..+.- ....+.+++   |.  +..+|+.|.          ..|.|.+|++...+ ...+... ..+
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~-~v~  885 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEK-EVK  885 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEE-EES
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEE-EcC
Confidence            466777766665544431 122344544   33  246888776          34789999997543 3333322 235


Q ss_pred             CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +++++++--  +|.++++  .... +++|++... +.+. ....+ ..|..+.....+ .+++.|..-..|.++.++...
T Consensus       886 g~v~al~~~--~g~Lla~--ig~~-l~vy~l~~~-~~L~~~~~~~-~~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~~  957 (1158)
T 3ei3_A          886 GAVYSMVEF--NGKLLAS--INST-VRLYEWTTE-KELRTECNHY-NNIMALYLKTKG-DFILVGDLMRSVLLLAYKPME  957 (1158)
T ss_dssp             SCEEEEEEE--TTEEEEE--ETTE-EEEEEECTT-SCEEEEEEEC-CCSCEEEEEEET-TEEEEEESSBCEEEEEEETTT
T ss_pred             CcCEEEeee--CCEEEEE--cCCE-EEEEECCCC-ceEEEEeecc-ccEEEEEEeccC-CEEEEEEhhheEEEEEEEcCC
Confidence            788888754  5654443  3344 999999863 3333 22212 123333333455 489999988889888877644


Q ss_pred             CCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                               ..+..+........++++.+-.++ .++.+..+|.+.+++
T Consensus       958 ---------~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~  996 (1158)
T 3ei3_A          958 ---------GNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQ  996 (1158)
T ss_dssp             ---------TEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEE
T ss_pred             ---------CeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEe
Confidence                     011122222346678888887665 577777888888765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.19  E-value=0.048  Score=53.20  Aligned_cols=238  Identities=8%  Similarity=0.103  Sum_probs=137.8

Q ss_pred             EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEe
Q 040307           24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWE  102 (339)
Q Consensus        24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~  102 (339)
                      --+|.   .+.+|.-.     ...++|++++.......      ...+.+|.-=.|-...      .|+-.++ .|+-|+
T Consensus        72 IMnP~---~~iiALra-----g~~lQiFnl~~k~klks------~~~~e~VvfWkWis~~------~l~lVT~~aVyHW~  131 (1630)
T 1xi4_A           72 IMNPA---SKVIALKA-----GKTLQIFNIEMKSKMKA------HTMTDDVTFWKWISLN------TVALVTDNAVYHWS  131 (1630)
T ss_pred             ccCCC---cceEEEec-----CCeEEEeehHHhhhhcc------cccCCCceEEEecCCC------eeEEEcCCeEEEec
Confidence            35677   77888876     68999977665432222      2345578788887765      5555555 999999


Q ss_pred             ecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-------CCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307          103 IHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-------VDTTCVIWDIDREILETQLVAHDREVYDISWG  175 (339)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  175 (339)
                      +... ..+...+..|..-.- ..|..-.-++ +.++++..|       -.|.+.+|..+.+ ..+.+.+|...-..+...
T Consensus       132 ~~~~-s~P~k~fdR~~~L~~-~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~  207 (1630)
T 1xi4_A          132 MEGE-SQPVKMFDRHSSLAG-CQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKME  207 (1630)
T ss_pred             cCCC-CccHHHHhcchhccc-CeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccC
Confidence            9753 246566665532221 4566666776 777766543       3578889988654 344556776554444443


Q ss_pred             ----CCcEEEEEeC---CCcEEEEECCCC-c-------ceeeE-EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307          176 ----GFNVFASVSG---DCSVRVFDLRDK-E-------RSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL  239 (339)
Q Consensus       176 ----~~~~l~~~~~---d~~i~i~d~~~~-~-------~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~  239 (339)
                          +..+++.+..   .+.++|-++... .       ....+ +.......-..++..++ .-..+..-+.-|. +++|
T Consensus       208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~-~~~~  285 (1630)
T 1xi4_A          208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGY-IHLY  285 (1630)
T ss_pred             CCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCce-EEEE
Confidence                2334443332   268999988654 1       11111 11111223345677776 5667777788888 9999


Q ss_pred             ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |+.+ +.++..-+-....|...+-++... =++.....|.|.--.+....
T Consensus       286 d~~t-~~~i~~~ris~~~iF~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          286 DLET-GTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             eccc-chhhhhccccCCceEEeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence            9998 555544443344444444333321 23333356666555555444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.98  E-value=0.099  Score=42.48  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=78.0

Q ss_pred             CeEEEeC-------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCC
Q 040307           89 DIVATSG-------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDRE  156 (339)
Q Consensus        89 ~~la~~~-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~  156 (339)
                      ++++.|+       +.+.+||+.+.++..+..+....     .....+.+   ++.+++.|+.+     ..+.+||+.+.
T Consensus       123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-----IGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc-----cceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence            6777776       16889999888755444333221     11122222   56788887764     46889998776


Q ss_pred             eee--eeeeccCCceeEEEecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307          157 ILE--TQLVAHDREVYDISWGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       157 ~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                      +-.  ..+.... .-.++...++.+++.|+.+     ..+.+||+.+.+-... ...+...... +++..  ++++++.|
T Consensus       195 ~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~i~v~G  269 (308)
T 1zgk_A          195 EWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-APMKHRRSAL-GITVH--QGRIYVLG  269 (308)
T ss_dssp             EEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEEE--TTEEEEEC
T ss_pred             eEeeCCCCCCcc-ccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-CCCCCCccce-EEEEE--CCEEEEEc
Confidence            521  1111111 1122333367788888764     5689999988753222 1221111222 22332  56777777


Q ss_pred             eeCCC----eEEEEecCC
Q 040307          230 GMDSN----KVVVLDIRF  243 (339)
Q Consensus       230 ~~d~~----~i~i~d~~~  243 (339)
                      +.++.    .+.+||+.+
T Consensus       270 G~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          270 GYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             CBCSSCBCCEEEEEETTT
T ss_pred             CcCCCcccceEEEEcCCC
Confidence            75432    377788765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.90  E-value=0.15  Score=42.53  Aligned_cols=235  Identities=13%  Similarity=0.072  Sum_probs=117.4

Q ss_pred             CceEEEEcCCCCCCCCC-eEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEEeC---
Q 040307           73 TPTNIAFFPSEETLNPD-IVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATCSV---  144 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~-~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~---  144 (339)
                      ....|+|.|++     + ++++-.. .|++++.+......+..+...... -......|+++|.   ++.+.++-..   
T Consensus        19 ~P~~i~~~pdG-----~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           19 HPWALAFLPDN-----HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAH-GQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             SEEEEEECSTT-----CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCS-TTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             CcEEEEEcCCC-----CEEEEEeCCceEEEEeCCCceeeEecCCcccccC-CCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            46899999999     8 8877665 888887432110111111100000 0145689999983   3444444322   


Q ss_pred             ----CCeEEEEECCCC--e--eee----eeec---cCCceeEEEec-CCcEEEEEeCC-------------CcEEEEECC
Q 040307          145 ----DTTCVIWDIDRE--I--LET----QLVA---HDREVYDISWG-GFNVFASVSGD-------------CSVRVFDLR  195 (339)
Q Consensus       145 ----d~~v~i~d~~~~--~--~~~----~~~~---~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~i~d~~  195 (339)
                          ...|..+++...  .  ...    .+..   .......|.|. ++.++++.+..             +.|.-+|..
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence                235666666432  1  111    1110   11123579999 66655554332             356666655


Q ss_pred             CCc------------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCC-eEEEEec--------CC----------
Q 040307          196 DKE------------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSN-KVVVLDI--------RF----------  243 (339)
Q Consensus       196 ~~~------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~-~i~i~d~--------~~----------  243 (339)
                      ..-            ........  + .....++|+|.++.++++-.. ++. .|.+...        ..          
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G--~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYG--I-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEEC--C-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCCCCcCCCCCCccEEEEc--C-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            320            11111111  1 346789999855555544221 111 1222110        00          


Q ss_pred             ----------CCCceEEEecCCCCeeEEEecc-------CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307          244 ----------PTNPVVVLSKHEGSVNGISWAP-------LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC  306 (339)
Q Consensus       244 ----------~~~~~~~~~~~~~~v~~~~~~p-------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  306 (339)
                                ...|+..+.. ......++|.+       ++ .++++.-..+.|...++....          .......
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~----------~~~~~~~  317 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDK----------VTEDGRI  317 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTE----------EEEEEEE
T ss_pred             CcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCe----------EeeeEEc
Confidence                      0122233332 23567788864       35 466666677788888877533          0001111


Q ss_pred             e-cccceeEEEEecCCCCceEEE
Q 040307          307 Y-QSMAEINVVRWSPLELDWIAI  328 (339)
Q Consensus       307 ~-~~~~~i~~~~~~p~~~~l~~~  328 (339)
                      . .....+..+++.|+|..+++.
T Consensus       318 ~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          318 LTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             SGGGCCCEEEEEECTTSCEEEEE
T ss_pred             ccCCCCceeEEEECCCCcEEEEE
Confidence            1 234579999999999854443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.90  E-value=0.13  Score=41.97  Aligned_cols=184  Identities=8%  Similarity=0.048  Sum_probs=92.3

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-------------cE
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-------------SL   98 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-------------~i   98 (339)
                      +.+++.|+      ..+.+  ++....+... ... ..............++     .+++.|+.             .+
T Consensus        16 ~~i~~~GG------~~~~~--yd~~~~~W~~-~~~-~~~~~r~~~~~~~~~~-----~lyv~GG~~~~~~~~~~~~~~~~   80 (318)
T 2woz_A           16 DLILLVND------TAAVA--YDPMENECYL-TAL-AEQIPRNHSSIVTQQN-----QVYVVGGLYVDEENKDQPLQSYF   80 (318)
T ss_dssp             EEEEEECS------SEEEE--EETTTTEEEE-EEE-CTTSCSSEEEEECSSS-----CEEEEESSCC-------CCCBEE
T ss_pred             chhhhccc------cceEE--ECCCCCceec-ccC-CccCCccceEEEEECC-----EEEEECCcccCccccCCCccccE
Confidence            34566666      23566  4455555443 111 1111222223334455     67777761             16


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-------CeEEEEECCCCeeeeeeeccCCc--e
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-------TTCVIWDIDREILETQLVAHDRE--V  169 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~--v  169 (339)
                      .+||..+.++..+..+....     ... +++..  ++.+++.|+.+       ..+.+||+.+.+-. .+.....+  -
T Consensus        81 ~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~  151 (318)
T 2woz_A           81 FQLDNVSSEWVGLPPLPSAR-----CLF-GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPIKVYG  151 (318)
T ss_dssp             EEEETTTTEEEECSCBSSCB-----CSC-EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSSCEES
T ss_pred             EEEeCCCCcEEECCCCCccc-----ccc-ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCCcccc
Confidence            77888777654443332211     111 22222  56788888764       35788898776522 11111111  1


Q ss_pred             eEEEecCCcEEEEEeC------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEE
Q 040307          170 YDISWGGFNVFASVSG------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVL  239 (339)
Q Consensus       170 ~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~  239 (339)
                      .++...++.+++.|+.      -..+.+||+.+.+-... ...+...... +++..  ++++++.|+.++.    .+.+|
T Consensus       152 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~y  227 (318)
T 2woz_A          152 HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-APMKTPRSMF-GVAIH--KGKIVIAGGVTEDGLSASVEAF  227 (318)
T ss_dssp             CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE--TTEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-CCCCCCcccc-eEEEE--CCEEEEEcCcCCCCccceEEEE
Confidence            1222235777777764      24589999988752222 1121112222 23332  6678888876542    37788


Q ss_pred             ecCC
Q 040307          240 DIRF  243 (339)
Q Consensus       240 d~~~  243 (339)
                      |..+
T Consensus       228 d~~~  231 (318)
T 2woz_A          228 DLKT  231 (318)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            8875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.72  E-value=0.23  Score=42.19  Aligned_cols=250  Identities=9%  Similarity=0.139  Sum_probs=145.9

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccC
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEF  122 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~  122 (339)
                      ....|.|.|+.......+.    ..    .--+.-.+|..     +++|.-.+ ++.|+|+++.+  .+..+.-.     
T Consensus        46 ~~~~vvIiDl~~~~~~~rr----pi----~AdsAIMnP~~-----~iiALrag~~lQiFnle~K~--klks~~~~-----  105 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRR----PI----SADSAIMNPAS-----KVIALKAGKTLQIFNIEMKS--KMKAHTMT-----  105 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEE----EC----CCSEEEECSSS-----SCEEEEETTEEEEEETTTTE--EEEEEECS-----
T ss_pred             CCCeEEEEECCCCCcceec----cc----ccceeeeCCCC-----cEEEEecCCeEEEEchHHhh--hhcceecC-----
Confidence            3457888665543332221    11    12345578888     78887655 99999999886  44444433     


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccC----CceeEEEec-CCcEEEEEeC-------CCcE
Q 040307          123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHD----REVYDISWG-GFNVFASVSG-------DCSV  189 (339)
Q Consensus       123 ~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~----~~v~~~~~~-~~~~l~~~~~-------d~~i  189 (339)
                       .+|.--.|-  +.+.|+-.+ +..|+-|++... .+.+.+..|.    ..|..-..+ +.++++..+-       .|.+
T Consensus       106 -e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m  181 (494)
T 1bpo_A          106 -DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  181 (494)
T ss_dssp             -SCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred             -CCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence             467777886  456666654 578999999643 4556665443    234444444 5666664432       3678


Q ss_pred             EEEECCCCcceeeEEeCCCCCCCeEEEEEe--cCCCCeEEEEeeC--CCeEEEEecCCC--CC-ce--EEEe------cC
Q 040307          190 RVFDLRDKERSTIIYENPVQDCPLLRLEWN--KADPRFMATVGMD--SNKVVVLDIRFP--TN-PV--VVLS------KH  254 (339)
Q Consensus       190 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~d--~~~i~i~d~~~~--~~-~~--~~~~------~~  254 (339)
                      .+|.......  ...++  |......+...  +....++..+...  |.+++|.++...  +. +.  ....      .-
T Consensus       182 QLYS~er~~s--Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~  257 (494)
T 1bpo_A          182 QLYSVDRKVS--QPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  257 (494)
T ss_dssp             EEEESTTCCE--EEECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred             EEeecccccc--chhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence            8888876642  22232  32222222221  1111234444332  234999998653  11 11  1111      11


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCe
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNK  333 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~  333 (339)
                      .+---++..++..+ ++..-+.-|.+.+||++++.             ++ ...-....|..-+-+.....+++....|.
T Consensus       258 ~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt-------------~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~Gq  323 (494)
T 1bpo_A          258 NDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGT-------------CIYMNRISGETIFVTAPHEATAGIIGVNRKGQ  323 (494)
T ss_dssp             TCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEEETTTTEEEEEETTCE
T ss_pred             cCceeEEEecccCC-EEEEEecCceEEEEecccce-------------eeeeecccCCceEEecccCCCCcEEEEccCce
Confidence            23445788888874 88899999999999999988             33 33334555666665565556777777776


Q ss_pred             EE
Q 040307          334 LQ  335 (339)
Q Consensus       334 v~  335 (339)
                      |.
T Consensus       324 Vl  325 (494)
T 1bpo_A          324 VL  325 (494)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.72  E-value=0.2  Score=41.65  Aligned_cols=232  Identities=9%  Similarity=-0.032  Sum_probs=116.7

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe--ecCCCCceEEEEcCC----CCCCCCCeE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI--FDHPYTPTNIAFFPS----EETLNPDIV   91 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~----~~~~~~~~l   91 (339)
                      .....++|.|+   ++++++ .    .++.|+++  +.++ . .....+.  .........|+|+|+    +     .++
T Consensus        29 ~~P~~ia~~pd---G~l~V~-e----~~g~I~~~--d~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g-----~ly   91 (354)
T 3a9g_A           29 EVPWSIAPLGG---GRYLVT-E----RPGRLVLI--SPSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKS-----WVY   91 (354)
T ss_dssp             SCEEEEEEEET---TEEEEE-E----TTTEEEEE--CSSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSC-----EEE
T ss_pred             CCCeEEEEcCC---CeEEEE-e----CCCEEEEE--eCCC-c-eEeeccceeecCCCceeeEEeCCCCCcCC-----EEE
Confidence            46789999999   885555 4    36999885  4332 2 2110110  122356899999997    4     555


Q ss_pred             EEeC---------CcEEEEeecCC--cc---ee-EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC------------
Q 040307           92 ATSG---------DSLRLWEIHDD--RT---EL-KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV------------  144 (339)
Q Consensus        92 a~~~---------~~i~iw~~~~~--~~---~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------  144 (339)
                      ++-.         ..|..|+....  ..   +. +..+...  ..  .....|.|.| ++.++++.+.            
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~--~~--h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~  166 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGA--YI--HNGGRIRFGP-DGMLYITTGDAADPRLAQDLSS  166 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECC--SS--CCCCCEEECT-TSCEEEECCCTTCGGGGTCTTC
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCC--CC--cCCceEEECC-CCcEEEEECCCCCCccccCCCC
Confidence            5432         35666666544  11   11 1112211  11  2345799998 8887776443            


Q ss_pred             -CCeEEEEECCCC---------eeeeeeeccCCceeEEEecC--CcEEEEEeCCC---cEEEEECCC--------Cc---
Q 040307          145 -DTTCVIWDIDRE---------ILETQLVAHDREVYDISWGG--FNVFASVSGDC---SVRVFDLRD--------KE---  198 (339)
Q Consensus       145 -d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~---~i~i~d~~~--------~~---  198 (339)
                       .|.|.-++....         ..+.. .++. ....++|++  ++++++-....   .|.+.....        ..   
T Consensus       167 ~~G~I~ri~~dG~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~  244 (354)
T 3a9g_A          167 LAGKILRVDEEGRPPADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR  244 (354)
T ss_dssp             CSSEEEEECTTSCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             CCeEEEEEcCCCCCCCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence             245666665321         01111 2343 346788884  44444332221   133322111        00   


Q ss_pred             --ceeeEEeCCCCCCCeEEEEEec------CCCCeEEEEeeCCCeEEEEecCCCCCce--EEEe-cCCCCeeEEEeccCC
Q 040307          199 --RSTIIYENPVQDCPLLRLEWNK------ADPRFMATVGMDSNKVVVLDIRFPTNPV--VVLS-KHEGSVNGISWAPLY  267 (339)
Q Consensus       199 --~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~~~~~d~~~i~i~d~~~~~~~~--~~~~-~~~~~v~~~~~~p~~  267 (339)
                        .................++|..      .++.++++.-..+. |...++...+...  ..+. .....+..+++.|+|
T Consensus       245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred             CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence              0001111101224577888841      25555554433444 8888876533322  2222 223578899999999


Q ss_pred             CCeEEEEe
Q 040307          268 GRRLCSVA  275 (339)
Q Consensus       268 ~~~l~~~~  275 (339)
                      . ++++..
T Consensus       324 ~-lyv~~~  330 (354)
T 3a9g_A          324 G-ILISTS  330 (354)
T ss_dssp             C-EEEEEC
T ss_pred             c-EEEEEe
Confidence            4 555553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.69  E-value=0.17  Score=46.43  Aligned_cols=198  Identities=11%  Similarity=0.060  Sum_probs=102.9

Q ss_pred             CeEEEeC---C---cEEEEeecCCcceeEE-EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCC
Q 040307           89 DIVATSG---D---SLRLWEIHDDRTELKS-LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDR  155 (339)
Q Consensus        89 ~~la~~~---~---~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~  155 (339)
                      .+++.||   .   .+.+||..+.++..+. .+...........-..+.+.. ++.+++.|+.+      ..+.+||+.+
T Consensus       399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            6777776   1   7899999988765554 211000000001222333321 56788887754      3578899887


Q ss_pred             Cee--eeeeeccCCceeEEEe-cCCcEEEEEeCCC--cEEEEECCCCcceeeEEe--CCCCCCCeEEEEEecCCCCeEEE
Q 040307          156 EIL--ETQLVAHDREVYDISW-GGFNVFASVSGDC--SVRVFDLRDKERSTIIYE--NPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       156 ~~~--~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      .+-  +..+...... .+++. .++.+++.|+.++  .+.+||+.+..-......  .+........+.+....+.+++.
T Consensus       478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            641  2122111111 23333 3688888887654  689999988753222110  11111222335555433677888


Q ss_pred             EeeC--C----CeEEEEecCCCCC--c--eEEEec---CCCCeeEEEeccCCCCeEEEEeC--------CCcEEEEEecC
Q 040307          229 VGMD--S----NKVVVLDIRFPTN--P--VVVLSK---HEGSVNGISWAPLYGRRLCSVAD--------DSRALIWEVVG  287 (339)
Q Consensus       229 ~~~d--~----~~i~i~d~~~~~~--~--~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~--------dg~v~iwd~~~  287 (339)
                      |+.+  +    ..+.+||+....-  .  ...+..   ....-.++....++ ++++.|+.        ...+.+||+.+
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCC
Confidence            8762  1    2388999886431  0  122211   11111223333335 57777773        24588888876


Q ss_pred             CC
Q 040307          288 PG  289 (339)
Q Consensus       288 ~~  289 (339)
                      ..
T Consensus       636 ~~  637 (695)
T 2zwa_A          636 ET  637 (695)
T ss_dssp             TE
T ss_pred             Ce
Confidence            54

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.64  E-value=0.21  Score=40.74  Aligned_cols=184  Identities=9%  Similarity=0.026  Sum_probs=92.6

Q ss_pred             CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----CC-------eEEEEECCCCe
Q 040307           89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV----DT-------TCVIWDIDREI  157 (339)
Q Consensus        89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~-------~v~i~d~~~~~  157 (339)
                      .+++.|+..+..||..+.++.. ..+.....    ..-.+++.  .++.+++.|+.    ++       .+.+||..+.+
T Consensus        17 ~i~~~GG~~~~~yd~~~~~W~~-~~~~~~~~----r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           17 LILLVNDTAAVAYDPMENECYL-TALAEQIP----RNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEEECSSEEEEEETTTTEEEE-EEECTTSC----SSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             hhhhccccceEEECCCCCceec-ccCCccCC----ccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            4566666688999999887544 22221110    11223333  26788888873    12       27788987765


Q ss_pred             eee--eeeccCCceeEEEecCCcEEEEEeCC-------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307          158 LET--QLVAHDREVYDISWGGFNVFASVSGD-------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT  228 (339)
Q Consensus       158 ~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  228 (339)
                      -..  .+.... .-.++...++.+++.|+.+       ..+.+||+.+.+-... ...+..... .+++..  ++.+++.
T Consensus        90 W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~--~~~iyv~  164 (318)
T 2woz_A           90 WVGLPPLPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYG-HNVISH--NGMIYCL  164 (318)
T ss_dssp             EEECSCBSSCB-CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEES-CEEEEE--TTEEEEE
T ss_pred             EEECCCCCccc-cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccc-cEEEEE--CCEEEEE
Confidence            221  111111 1122333367788888764       3478889887652221 111111111 122222  6777777


Q ss_pred             EeeC------CCeEEEEecCCCCCceEEEecCCC--CeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307          229 VGMD------SNKVVVLDIRFPTNPVVVLSKHEG--SVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG  289 (339)
Q Consensus       229 ~~~d------~~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~  289 (339)
                      |+.+      .. +.+||..+..  -..+.....  .-.+++. -++ ++++.|+.+     ..+.+||+.+..
T Consensus       165 GG~~~~~~~~~~-~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          165 GGKTDDKKCTNR-VFIYNPKKGD--WKDLAPMKTPRSMFGVAI-HKG-KIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CCEESSSCBCCC-EEEEETTTTE--EEEECCCSSCCBSCEEEE-ETT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             cCCCCCCCccce-EEEEcCCCCE--EEECCCCCCCcccceEEE-ECC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence            7753      23 8899987521  222211111  1112222 244 577777643     246677776544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.57  E-value=0.66  Score=45.67  Aligned_cols=193  Identities=8%  Similarity=0.156  Sum_probs=109.6

Q ss_pred             EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307           76 NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID  154 (339)
Q Consensus        76 ~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~  154 (339)
                      +.-.+|..     +++|.-.+ ++.|+|+++.+  .+..+.-.      .+|.--.|-  +.+.|+-.+ +..|+-|++.
T Consensus        70 sAIMnP~~-----~iiALrag~~lQiFnl~~k~--klks~~~~------e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~  133 (1630)
T 1xi4_A           70 SAIMNPAS-----KVIALKAGKTLQIFNIEMKS--KMKAHTMT------DDVTFWKWI--SLNTVALVT-DNAVYHWSME  133 (1630)
T ss_pred             hhccCCCc-----ceEEEecCCeEEEeehHHhh--hhcccccC------CCceEEEec--CCCeeEEEc-CCeEEEeccC
Confidence            34468887     88888766 99999999876  33333322      467777886  455555554 4689999996


Q ss_pred             C-Ceeeeeeecc----CCceeEEEec-CCcEEEEEe-------CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe--
Q 040307          155 R-EILETQLVAH----DREVYDISWG-GFNVFASVS-------GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN--  219 (339)
Q Consensus       155 ~-~~~~~~~~~~----~~~v~~~~~~-~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--  219 (339)
                      . ..+.+.+..|    ...|..-..+ +.++++..|       -.|.+.+|.........  .++  |......+...  
T Consensus       134 ~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~--ieg--ha~~F~~~~~~~~  209 (1630)
T 1xi4_A          134 GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--IEG--HAASFAQFKMEGN  209 (1630)
T ss_pred             CCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh--hhH--hHhhhheeccCCC
Confidence            4 2344445444    2344444444 566665443       34778888877654211  111  22222222221  


Q ss_pred             cCCCCeEEEEee--CCCeEEEEecCCC--CCceEE-----Ee----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          220 KADPRFMATVGM--DSNKVVVLDIRFP--TNPVVV-----LS----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       220 p~~~~~l~~~~~--d~~~i~i~d~~~~--~~~~~~-----~~----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      +....++..+..  .|.+++|.++...  +.+...     +.    .-..--.++..++..+ ++..-+.-|.+.+||+.
T Consensus       210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~  288 (1630)
T 1xi4_A          210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLE  288 (1630)
T ss_pred             CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecc
Confidence            111223222222  1234999988553  111110     00    0122334677777774 88888889999999999


Q ss_pred             CCC
Q 040307          287 GPG  289 (339)
Q Consensus       287 ~~~  289 (339)
                      ++.
T Consensus       289 t~~  291 (1630)
T 1xi4_A          289 TGT  291 (1630)
T ss_pred             cch
Confidence            987

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.57  E-value=0.26  Score=40.90  Aligned_cols=142  Identities=8%  Similarity=-0.031  Sum_probs=75.4

Q ss_pred             CeEEEeC--C-cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-C---------CeEEEEEC
Q 040307           89 DIVATSG--D-SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-D---------TTCVIWDI  153 (339)
Q Consensus        89 ~~la~~~--~-~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d---------~~v~i~d~  153 (339)
                      .+++.|+  . .+.+||+..  .++..+..+.....    ... +++..  ++.+++.|+. +         ..+.+||+
T Consensus        21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~   93 (357)
T 2uvk_A           21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR----DQA-TSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNP   93 (357)
T ss_dssp             EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC----BSC-EEEEE--TTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred             EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC----ccc-eEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence            6777776  2 889999874  44444433331110    111 22222  5677887776 2         46889999


Q ss_pred             CCCeee--eeeeccCCceeEEEecCCcEEEEEeCC---------------------------------------CcEEEE
Q 040307          154 DREILE--TQLVAHDREVYDISWGGFNVFASVSGD---------------------------------------CSVRVF  192 (339)
Q Consensus       154 ~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d---------------------------------------~~i~i~  192 (339)
                      .+.+-.  ..+......-.++...++.+++.|+.+                                       ..+.+|
T Consensus        94 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A           94 KTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             TTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             CCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence            876521  111101111112222367888888765                                       478899


Q ss_pred             ECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC------CCeEEEEec
Q 040307          193 DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD------SNKVVVLDI  241 (339)
Q Consensus       193 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------~~~i~i~d~  241 (339)
                      |+.+.+-... ...+.....-.+++..  ++.+++.|+.+      .. +.+||+
T Consensus       174 d~~~~~W~~~-~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~-v~~~d~  224 (357)
T 2uvk_A          174 DPSTQQWSYA-GESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDA-VFELDF  224 (357)
T ss_dssp             ETTTTEEEEE-EECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCC-EEEEEC
T ss_pred             eCCCCcEEEC-CCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCc-eEEEEe
Confidence            9988763322 2221111111233333  56777777643      23 777876

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.00  E-value=0.13  Score=39.23  Aligned_cols=147  Identities=5%  Similarity=-0.086  Sum_probs=81.0

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc--------eeEEEec-CCcEEEEEeCCCcEEEEEC
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE--------VYDISWG-GFNVFASVSGDCSVRVFDL  194 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~--------v~~~~~~-~~~~l~~~~~d~~i~i~d~  194 (339)
                      ..+..++|+| ++.+.+.  .+|.++-.+..+.....-+. ....        -.++.|. ++.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            3677999999 8887777  67887777765532111111 1111        3567777 5666666  5698887775


Q ss_pred             CCCccee------eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc------eEEEe--cCCCCeeE
Q 040307          195 RDKERST------IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP------VVVLS--KHEGSVNG  260 (339)
Q Consensus       195 ~~~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~------~~~~~--~~~~~v~~  260 (339)
                      .+.....      .+...  .=..+..+.+.| +|.+.++.  ++. ++-.  ..+...      ..+..  ..-..-+.
T Consensus       115 P~~~~~~Wl~~a~~vg~~--gw~~~~~lff~p-~G~Lyav~--dg~-lyr~--~~P~~~~~~wl~~~~~~g~~g~~~yr~  186 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSG--GWSGFKFLFFHP-NGYLYAVH--GQQ-FYKA--LPPVSNQDNWLARATKIGQGGWDTFKF  186 (236)
T ss_dssp             CCSTTCCHHHHSEEEECS--SGGGEEEEEECT-TSCEEEEE--TTE-EEEE--CCCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred             CcCCCCceeccccEeccC--CCCceEEEEECC-CceEEEEe--CCc-EEec--CCCCCCCcccccccceeccCCcceEEE
Confidence            4332111      11111  114678999998 88877766  665 4332  222111      11121  22224455


Q ss_pred             EEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          261 ISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       261 ~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +.|.|++ .+.+..  ++  ++|......
T Consensus       187 l~f~~~G-~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          187 LFFSSVG-TLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             EEECTTS-CEEEEE--TT--EEEEESCCC
T ss_pred             EEECCCC-cEEEEe--CC--eEEecCCcc
Confidence            7799998 355444  66  566555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.79  E-value=0.98  Score=41.43  Aligned_cols=196  Identities=9%  Similarity=0.084  Sum_probs=101.2

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCccccee-eE---eecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-------cE
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADN-RL---IFDHPYTPTNIAFFP-SEETLNPDIVATSG-D-------SL   98 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~-~~---~~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-------~i   98 (339)
                      +.+++.|+.....-+.+.+|+.  ....+.... ..   .......-.++...+ ++     .+++.|| +       .+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~--~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-----~lyv~GG~~~~~~~~~dv  470 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSI--HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-----QLLLIGGRKAPHQGLSDN  470 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEE--CSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-----EEEEECCBSSTTCBCCCC
T ss_pred             CEEEEECCCCCCCcCcEEEEEC--CCCeEEEeccCCCCCCCCccccceEEEEEccCC-----EEEEEcCCCCCCCccccE
Confidence            6677777731112345666444  444444311 00   011122223444443 66     7888776 1       57


Q ss_pred             EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeee-----eeccCCceeE
Q 040307           99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT--TCVIWDIDREILETQ-----LVAHDREVYD  171 (339)
Q Consensus        99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~-----~~~~~~~v~~  171 (339)
                      .+||..+.++..+..+....     ..-..+.+.  ++.+++.|+.++  .+.+||+.+.+-...     +.........
T Consensus       471 ~~yd~~t~~W~~~~~~p~~R-----~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a  543 (695)
T 2zwa_A          471 WIFDMKTREWSMIKSLSHTR-----FRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAG  543 (695)
T ss_dssp             EEEETTTTEEEECCCCSBCC-----BSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCE
T ss_pred             EEEeCCCCcEEECCCCCCCc-----ccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeE
Confidence            88998887755554333221     122223222  678888888755  789999987652111     1111112233


Q ss_pred             EEec-C-CcEEEEEeCC-------CcEEEEECCCCcc-----eeeEEeC-CCCCCCeEEEEEecCCCCeEEEEeeCC---
Q 040307          172 ISWG-G-FNVFASVSGD-------CSVRVFDLRDKER-----STIIYEN-PVQDCPLLRLEWNKADPRFMATVGMDS---  233 (339)
Q Consensus       172 ~~~~-~-~~~l~~~~~d-------~~i~i~d~~~~~~-----~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~---  233 (339)
                      +.+. . +.+++.|+.+       ..+.+||+.+..-     -..+... +........+.+.  ++.+++.|+.++   
T Consensus       544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCC
T ss_pred             EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCC
Confidence            4445 3 6677777652       3588999988762     1122111 1112222333332  377888887531   


Q ss_pred             ----CeEEEEecCC
Q 040307          234 ----NKVVVLDIRF  243 (339)
Q Consensus       234 ----~~i~i~d~~~  243 (339)
                          ..+.+||..+
T Consensus       622 ~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          622 FDRTNSIISLDPLS  635 (695)
T ss_dssp             CCTTTSEEEEETTT
T ss_pred             CCCCCeEEEEECCC
Confidence                1388898875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.47  E-value=0.89  Score=37.56  Aligned_cols=231  Identities=10%  Similarity=0.007  Sum_probs=117.5

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee---EeecCCCCceEEEEcCC----CCCCCCCe
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR---LIFDHPYTPTNIAFFPS----EETLNPDI   90 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~----~~~~~~~~   90 (339)
                      .....|+|.|+   +.++++-.    ..|.|++  ++..++.......   ...........|+++|+    +     .+
T Consensus        32 ~~P~~ia~~pd---G~llVter----~~G~I~~--v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-----~l   97 (347)
T 3das_A           32 NSPWGLAPLPG---GDLLVSSR----DEATITR--VDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH-----MV   97 (347)
T ss_dssp             SSEEEEEECTT---SCEEEEET----TTCEEEE--ECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-----EE
T ss_pred             CCceEEEEcCC---CcEEEEEe----cCCEEEE--EECCCCcEeeecccCceeecCCCCceeeEeccccccCC-----EE
Confidence            57789999999   98666644    4788988  4443333221101   11233566899999995    4     55


Q ss_pred             EEEe---CC-cEEEEeecCC-----c---cee-EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-------------
Q 040307           91 VATS---GD-SLRLWEIHDD-----R---TEL-KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-------------  144 (339)
Q Consensus        91 la~~---~~-~i~iw~~~~~-----~---~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------  144 (339)
                      .++-   .+ .|.-|.+...     .   .+. +..+..  ...  ..-..|.|.| ++.+.++.+.             
T Consensus        98 Yv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~--~~~--H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~  172 (347)
T 3das_A           98 YAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK--GVI--HNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSL  172 (347)
T ss_dssp             EEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC--CSS--CCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCS
T ss_pred             EEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC--CCC--ccCccccCCC-CCCEEEEECCCCCCccccCCCCC
Confidence            5542   23 6666665542     1   111 112221  111  2345799998 8887777542             


Q ss_pred             CCeEEEEECCCC---------eeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcc--------------
Q 040307          145 DTTCVIWDIDRE---------ILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKER--------------  199 (339)
Q Consensus       145 d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~--------------  199 (339)
                      .|.|.-.+....         ..+.. .+|.+ ...++|+ ++.++++-. .++.=.|--+..+..              
T Consensus       173 ~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~  250 (347)
T 3das_A          173 GGKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSG  250 (347)
T ss_dssp             TTCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTT
T ss_pred             CCEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcc
Confidence            355555554322         01111 24443 4678888 455444332 222222222222211              


Q ss_pred             ---eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307          200 ---STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYGRRLCS  273 (339)
Q Consensus       200 ---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~  273 (339)
                         +...+..  +......++|.  ++.++...-..+. |....+...+   ++...+.+....+..|+..|+|. ++++
T Consensus       251 ~~~P~~~~~~--~~~ap~G~~~~--~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~  324 (347)
T 3das_A          251 FHDPVAQWST--DEASPSGIAYA--EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLV  324 (347)
T ss_dssp             CCCCSEEECT--TTCCEEEEEEE--TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred             ccCCcEecCC--CCCCCcceEEE--cCceeeccccCCE-EEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEE
Confidence               0111110  11355677776  4555544433344 7666665422   12223333346899999999994 4444


Q ss_pred             Ee
Q 040307          274 VA  275 (339)
Q Consensus       274 ~~  275 (339)
                      .+
T Consensus       325 td  326 (347)
T 3das_A          325 TS  326 (347)
T ss_dssp             EC
T ss_pred             Ec
Confidence            33

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.36  E-value=0.88  Score=36.83  Aligned_cols=136  Identities=9%  Similarity=0.021  Sum_probs=69.1

Q ss_pred             CCCEEEEEe--CCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCC--------------CcEEEEECCCCc
Q 040307          135 DTRRVATCS--VDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGD--------------CSVRVFDLRDKE  198 (339)
Q Consensus       135 ~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~  198 (339)
                      ++..|....  .++.|...+.... ....+...  .+..+.. ++++|.-+...              ..|+..++...+
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~~--~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~   99 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSND--TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG   99 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSC-SCEEEEEE--EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCC-CCEEccCC--ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence            445555543  2566666665433 34444322  2233322 46666655432              357777777665


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD  276 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  276 (339)
                      ... +...     .  ...|+| .++.|+...  .++. -.||-+...+.....+..+..    .+|+|+++ .|+-.+.
T Consensus       100 ~~~-l~~~-----~--~~~~s~-~g~~Iy~~~~~~~~~-~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~-~iy~t~~  164 (302)
T 3s25_A          100 STV-LDPD-----P--CIYASL-IGNYIYYLHYDTQTA-TSLYRIRIDGEEKKKIKNHYL----FTCNTSDR-YFYYNNP  164 (302)
T ss_dssp             CEE-EECS-----C--EEEEEE-ETTEEEEEEESSSSC-EEEEEEETTSCCCEEEESSCC----CCSEEETT-EEEEECT
T ss_pred             ceE-eecC-----C--ccEEEE-eCCEEEEEeecCCCC-ceEEEEECCCCCeEEEeCCCc----eEeeEECC-EEEEEeC
Confidence            322 2221     2  236777 677777665  2343 444444433444556655433    46788885 5554443


Q ss_pred             -CCcEEEEEecCCC
Q 040307          277 -DSRALIWEVVGPG  289 (339)
Q Consensus       277 -dg~v~iwd~~~~~  289 (339)
                       ...|..-++....
T Consensus       165 g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          165 KNGQLYRYDTASQS  178 (302)
T ss_dssp             TTCCEEEEETTTTE
T ss_pred             CCceEEEEECCCCC
Confidence             4566666655443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.36  E-value=1.1  Score=37.80  Aligned_cols=153  Identities=9%  Similarity=-0.078  Sum_probs=75.6

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-----c--------CCceeEEEecC--CcEEEEEeCCCc
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA-----H--------DREVYDISWGG--FNVFASVSGDCS  188 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~--------~~~v~~~~~~~--~~~l~~~~~d~~  188 (339)
                      ..+.+|.+.|.+...|..+..++.|...+ ..++....+..     +        ...+.++.+++  ...|..+...+ 
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-  254 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-  254 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence            45789999874455555565555554432 22332222210     0        12478888883  36666666544 


Q ss_pred             EEEEECCCCcceeeEEe-CCC-CCCCeEEEEEecCCCCeEEEEee-----------CCCeEEEEecCCCCCceEEEec-C
Q 040307          189 VRVFDLRDKERSTIIYE-NPV-QDCPLLRLEWNKADPRFMATVGM-----------DSNKVVVLDIRFPTNPVVVLSK-H  254 (339)
Q Consensus       189 i~i~d~~~~~~~~~~~~-~~~-~~~~v~~~~~~p~~~~~l~~~~~-----------d~~~i~i~d~~~~~~~~~~~~~-~  254 (339)
                      |...+-.... -..+.. .+. ....+..++++|.+...|.++..           ++. ..+|.....++....+.. -
T Consensus       255 l~~s~D~G~t-W~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~-~~~~~S~DgG~tW~~~~~gl  332 (394)
T 3b7f_A          255 IYRMDRREGV-WKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGK-PAVYVTRDAGESWQRQDRGL  332 (394)
T ss_dssp             EEEEETTTTE-EECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSS-CCEEEESSTTSCCEEECBTS
T ss_pred             EEEeCCCCCc-ceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCc-eeEEEECCCCCCceECCCCC
Confidence            4444322221 111111 110 00345678888755566666542           233 456665554444444321 0


Q ss_pred             C--C----C-eeEEEeccCCCCeEEEEeCCCcE
Q 040307          255 E--G----S-VNGISWAPLYGRRLCSVADDSRA  280 (339)
Q Consensus       255 ~--~----~-v~~~~~~p~~~~~l~~~~~dg~v  280 (339)
                      .  .    . ...++++|..+..|+.++.++.|
T Consensus       333 p~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          333 PTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             CCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence            1  0    1 13688888654456666655554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.11  E-value=1.2  Score=36.85  Aligned_cols=239  Identities=14%  Similarity=0.145  Sum_probs=123.3

Q ss_pred             CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEE--e
Q 040307           71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATC--S  143 (339)
Q Consensus        71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~--~  143 (339)
                      -.....|+|.|++     +++++-- . .|++++..+++...+..+..-...+ ......|+++|.   ++.+.++-  .
T Consensus        31 L~~P~~ia~~pdG-----~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g-~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           31 LNSPWGLAPLPGG-----DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSG-EGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             CSSEEEEEECTTS-----CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBT-TBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             CCCceEEEEcCCC-----cEEEEEecCCEEEEEECCCCcEeeecccCceeecC-CCCceeeEeccccccCCEEEEEEecC
Confidence            3457899999999     8888876 3 8888876555432332221100001 156789999982   24444432  2


Q ss_pred             CCCeEEEEECCCC----------eee-eeee-ccCCceeEEEec-CCcEEEEEeC-------------CCcEEEEECCCC
Q 040307          144 VDTTCVIWDIDRE----------ILE-TQLV-AHDREVYDISWG-GFNVFASVSG-------------DCSVRVFDLRDK  197 (339)
Q Consensus       144 ~d~~v~i~d~~~~----------~~~-~~~~-~~~~~v~~~~~~-~~~~l~~~~~-------------d~~i~i~d~~~~  197 (339)
                      .++.|.-|.+..+          +.+ ..+. ........|.|. ++.++++.+.             .|.|.-.+....
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            3456666665441          111 1121 111234568998 6777776542             244444444322


Q ss_pred             cc------eeeEEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCC-eEEEEecCC---------------CCCceEEEecC
Q 040307          198 ER------STIIYENPVQDCPLLRLEWNKADPRFMATVG-MDSN-KVVVLDIRF---------------PTNPVVVLSKH  254 (339)
Q Consensus       198 ~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~-~i~i~d~~~---------------~~~~~~~~~~~  254 (339)
                      -.      ...++.. .+ .....++|+| ++.+.++-. .++. .|.+..--.               ...|+..+..+
T Consensus       185 ip~~nPf~~~~i~a~-G~-RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~  261 (347)
T 3das_A          185 PAPGNPFPGSPVYSY-GH-RNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD  261 (347)
T ss_dssp             BCTTCSSTTCCEEEB-CC-SBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred             ccCCCCCCCCeEEee-CC-CCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence            00      0112221 12 2456899998 777665532 1221 233321100               01234444333


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEe
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      ......++|.. + .++...-..+.|....+....  .       ..++. .+.+....+.+|+..|||..+++..
T Consensus       262 ~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~--~-------~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          262 EASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTA--A-------AADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTE--E-------SSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCcceEEEc-C-ceeeccccCCEEEEEEecCCc--e-------ecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            34566778773 4 355555555666666665543  0       00122 2223456899999999998666654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.86  E-value=2.4  Score=39.22  Aligned_cols=233  Identities=7%  Similarity=-0.002  Sum_probs=124.9

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      ...|.+|.-..+   | +|-.|+    .+| +..|  +..  .+.............|.++.-..++     .+.+...+
T Consensus        21 ~n~V~~I~qD~~---G-~lWigT----~~G-L~ry--DG~--~~~~~~~~~~~~~~~i~~i~~d~~g-----~lWigT~~   82 (758)
T 3ott_A           21 ASVVSCFLQDSE---G-LIWIGS----NKG-LFSY--DGY--STQQHFTYGENNNTRIYCGVIIDNT-----YLYMGTDN   82 (758)
T ss_dssp             CCCEEEEEECTT---S-CEEEEE----SSC-EEEE--CSS--CEEECSCTTSTTSSCEEEEEEETTT-----EEEEEETT
T ss_pred             cceEEEEEECCC---C-CEEEEE----CCC-cccc--CCC--ceEEEEccCCCCCceEEEEEEcCCC-----cEEEEeCC
Confidence            356888876666   5 455666    355 4443  321  1111000001123468888777777     56555545


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-----ccCCceeE
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-----AHDREVYD  171 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~~~~~v~~  171 (339)
                      -+..||..+.+...  ....     ....|.++...  ++ .|..++.+ .|..+|..+++.. .+.     .....|.+
T Consensus        83 Gl~~yd~~~~~f~~--~~~~-----~~~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~  150 (758)
T 3ott_A           83 GILVYNYRADRYEQ--PETD-----FPTDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYS  150 (758)
T ss_dssp             EEEEEETTTTEECC--CSCC-----CCSCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEE
T ss_pred             CeEEEeCCCCEEEC--cccC-----CCceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEE
Confidence            78889987764221  1011     11457776543  44 45555655 6888998765532 221     11345778


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV  248 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~  248 (339)
                      +... ++.+.+ ++.. -|..+|..+.+.........  .....|.++...+ ++..|..|+. ++ +..+|... .+ +
T Consensus       151 i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~G-l~~~~~~~-~~-~  223 (758)
T 3ott_A          151 IIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GY-LFQYFPST-GQ-I  223 (758)
T ss_dssp             EEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EE-EEEEETTT-TE-E
T ss_pred             EEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CC-CeEEcCCC-Ce-E
Confidence            7776 555544 4544 47788877654221111110  0123478888775 5565555664 45 99999765 22 2


Q ss_pred             EEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          249 VVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       249 ~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ..+. .....|.++...+++.  |..|+.+ -+.+++.....
T Consensus       224 ~~~~~l~~~~i~~i~~d~~g~--lWigT~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          224 KQTEAFHNNSIKSLALDGNGD--LLAGTDN-GLYVYHNDTTP  262 (758)
T ss_dssp             EEEEEEEEEEEEEEEECTTCC--EEEEETT-EEEEECCTTSC
T ss_pred             EeccCCCCCeEEEEEEcCCCC--EEEEeCC-ceeEEecCCCc
Confidence            2221 1234588888888873  4445544 57777765543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.77  E-value=1.8  Score=37.32  Aligned_cols=106  Identities=9%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC------CCCCCeEEEEEecC---CCCeEEEEee-----
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP------VQDCPLLRLEWNKA---DPRFMATVGM-----  231 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~v~~~~~~p~---~~~~l~~~~~-----  231 (339)
                      ...+.|+|. +++++++-...+.|++++...+.... +...+      .....+..|+|+|+   ++.+.++-+.     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            356789998 67666554333468888765444222 21111      12456789999984   4444444332     


Q ss_pred             -------CCCeEEEEecCCCC------CceE-EEec-CCCCeeEEEeccCCCCeEEEEe
Q 040307          232 -------DSNKVVVLDIRFPT------NPVV-VLSK-HEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       232 -------d~~~i~i~d~~~~~------~~~~-~~~~-~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                             ... |.-|+.....      +.+. .+.. .......|+|.|+| ++.++.+
T Consensus       106 ~~~~~~~~~~-v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTI-IRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             --CCSCEEEE-EEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CccccccccE-EEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                   122 5556553311      1111 1211 12347899999999 4666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.71  E-value=1.9  Score=37.22  Aligned_cols=106  Identities=11%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--eeeeec------cCCceeEEEecC----CcEEEEEeC------
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL--ETQLVA------HDREVYDISWGG----FNVFASVSG------  185 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~------~~~~v~~~~~~~----~~~l~~~~~------  185 (339)
                      .....|+|.| +++++++-...+.|++++..+++.  +..+..      ....+..|+|+|    +..|..+..      
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4567999998 888777654445788888655542  222211      234567999994    444444332      


Q ss_pred             -------CCcEEEEECCCCc----ceeeEEe-CC-CCCCCeEEEEEecCCCCeEEEEee
Q 040307          186 -------DCSVRVFDLRDKE----RSTIIYE-NP-VQDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       186 -------d~~i~i~d~~~~~----~~~~~~~-~~-~~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                             ...|.-|++....    ....+.. .+ ........++|.| +|.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence                   1345555553321    1122221 11 1123578999998 7776666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.07  E-value=1.5  Score=33.51  Aligned_cols=141  Identities=6%  Similarity=-0.108  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcc----eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRT----ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      ..+..++|+|++     .+.+..++.++-.+..+.+.    .....+....   . ....++.|.| ++.+.++  .||.
T Consensus        41 ~~~~~laf~P~G-----~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G---w-~~F~a~~fD~-~G~LYav--~dG~  108 (236)
T 1tl2_A           41 SNFKFLFLSPGG-----ELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGG---W-NQFQFLFFDP-NGYLYAV--SKDK  108 (236)
T ss_dssp             TTCSEEEECTTS-----CEEEEETTEEEEESCCCSTTCCHHHHCEEEECSC---G-GGCSEEEECT-TSCEEEE--ETTE
T ss_pred             ccceeEEECCCc-----cEEEEeCCeEEEECCCCCCcccccccccEecccc---c-ccceEEEECC-CCCEEEe--CCCE
Confidence            478899999999     88888444655555433220    0111111100   0 1236788987 8887777  5699


Q ss_pred             EEEEECCCCeeeee------e-eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc------ceeeEEeCCCCCCCe
Q 040307          148 CVIWDIDREILETQ------L-VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE------RSTIIYENPVQDCPL  213 (339)
Q Consensus       148 v~i~d~~~~~~~~~------~-~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~v  213 (339)
                      |+-++..+.....-      + ..-=..+..|.+. ++.+.+..  |+.++-.......      ....+...  .-...
T Consensus       109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~--g~~~y  184 (236)
T 1tl2_A          109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG--GWDTF  184 (236)
T ss_dssp             EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS--SGGGE
T ss_pred             EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC--CcceE
Confidence            98887644321111      1 1011357888888 56555555  7775432222111      11111111  12234


Q ss_pred             EEEEEecCCCCeEEEE
Q 040307          214 LRLEWNKADPRFMATV  229 (339)
Q Consensus       214 ~~~~~~p~~~~~l~~~  229 (339)
                      .-+.|.| ++.+.++.
T Consensus       185 r~l~f~~-~G~l~~v~  199 (236)
T 1tl2_A          185 KFLFFSS-VGTLFGVQ  199 (236)
T ss_dssp             EEEEECT-TSCEEEEE
T ss_pred             EEEEECC-CCcEEEEe
Confidence            4566776 77776665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.91  E-value=4  Score=37.80  Aligned_cols=226  Identities=7%  Similarity=-0.016  Sum_probs=118.5

Q ss_pred             CceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           73 TPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      .|.++...+++     ..|-.|++ -+..++..+.+......+..       ..|.++...+ ++.+.+ |+. +-+.++
T Consensus       192 ~i~~i~~d~~~-----~~lWigt~~Gl~~~~~~~~~~~~~~~l~~-------~~i~~i~~d~-~g~lWi-gT~-~Gl~~~  256 (758)
T 3ott_A          192 FVNSLLEDTTR-----QCVWIGTEGYLFQYFPSTGQIKQTEAFHN-------NSIKSLALDG-NGDLLA-GTD-NGLYVY  256 (758)
T ss_dssp             CEEEEEEETTT-----TEEEEEEEEEEEEEETTTTEEEEEEEEEE-------EEEEEEEECT-TCCEEE-EET-TEEEEE
T ss_pred             eeEEEEEECCC-----CEEEEEECCCCeEEcCCCCeEEeccCCCC-------CeEEEEEEcC-CCCEEE-EeC-CceeEE
Confidence            47788777765     43323333 67788877665333333322       4688888764 555444 454 468888


Q ss_pred             ECCCCeeeeeee--------ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEE
Q 040307          152 DIDREILETQLV--------AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEW  218 (339)
Q Consensus       152 d~~~~~~~~~~~--------~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~  218 (339)
                      +..+++.. .+.        -....|.++... +++ |-.|+..| +.++.... . ......    .......|.++.-
T Consensus       257 ~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~  331 (758)
T 3ott_A          257 HNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFR  331 (758)
T ss_dssp             CCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEE
T ss_pred             ecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEE
Confidence            87665432 221        112457888776 444 44455556 55543321 1 111110    0112245777777


Q ss_pred             ecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEec-------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC
Q 040307          219 NKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSK-------HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY  290 (339)
Q Consensus       219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~  290 (339)
                      .. ++.+. .|+. ++ +..++..... .....+..       ....|.++.-.+++.  |..|+ ++-+..||..+.. 
T Consensus       332 D~-~g~lW-iGt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~~GL~~~~~~~~~-  403 (758)
T 3ott_A          332 DS-KGFYW-FGGA-NG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-DGSINRYDYATRQ-  403 (758)
T ss_dssp             CT-TCCEE-EEET-TE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-TTEEEEEETTTTE-
T ss_pred             cC-CCCEE-EeeC-Cc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-CCcHhhcCcCCCc-
Confidence            64 55544 4454 45 8888765321 11222211       123588888887773  44455 4568888876644 


Q ss_pred             CCCCCCCCCcccceeeec-----ccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          291 RSGNGGPSGDVEPELCYQ-----SMAEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                                ........     ....|.++.-.+++. |..++..+.|.++
T Consensus       404 ----------~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~  444 (758)
T 3ott_A          404 ----------FIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVV  444 (758)
T ss_dssp             ----------EEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEE
T ss_pred             ----------EEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEE
Confidence                      11111101     124578888777775 4445555555554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.19  E-value=3  Score=34.32  Aligned_cols=108  Identities=7%  Similarity=-0.018  Sum_probs=59.9

Q ss_pred             CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEc--CCCCCEEEEE-eCCCeEEEEECCCCeeeeeeec
Q 040307           89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWA--GFDTRRVATC-SVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                      .+++...| .|.-.|.++++  ..-.++...   . .++....-.  +.++..++.. +.||.|..++..+|.....+..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~--~~W~~~~~~---~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~   85 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGH--IIWSIEPEN---F-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI   85 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTE--EEEEECGGG---S-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH
T ss_pred             EEEEEeCCCeEEEEECCCCc--EEEEecCCc---c-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc
Confidence            34444445 88888888776  444444320   0 122111100  1122334333 6899999999988864443321


Q ss_pred             ----cCCceeE---EEe------cCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307          165 ----HDREVYD---ISW------GGFNVFASVSGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       165 ----~~~~v~~---~~~------~~~~~l~~~~~d~~i~i~d~~~~~~~~~  202 (339)
                          ...++..   ...      +.+..+++++.++.+...|+++++..-.
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence                1122221   001      1466888999999999999999985443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.91  E-value=3.5  Score=34.14  Aligned_cols=243  Identities=7%  Similarity=-0.014  Sum_probs=119.3

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc--c-eeeEeecCCCCceEEEEcCC----CCCCCCCe
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS--A-DNRLIFDHPYTPTNIAFFPS----EETLNPDI   90 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~--~-~~~~~~~~~~~v~~l~~~~~----~~~~~~~~   90 (339)
                      .....|+|.|+   ++.|.++.    ..|.|++++  .++....  . ..............++|+|+    +     .+
T Consensus        18 ~~P~~i~~~pd---G~~l~V~e----~~G~i~~~~--~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-----~l   83 (353)
T 2g8s_A           18 DHPWALAFLPD---NHGMLITL----RGGELRHWQ--AGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR-----RI   83 (353)
T ss_dssp             SSEEEEEECST---TCCEEEEE----TTTEEEEEE--TTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC-----EE
T ss_pred             CCcEEEEEcCC---CCEEEEEe----CCceEEEEe--CCCceeeEecCCcccccCCCCCceeEEECCCCCCCC-----EE
Confidence            46789999999   98344445    478998855  3221111  0 00011122446789999995    4     55


Q ss_pred             EEEeC--------C-cEEEEeecCCc--ceeEE-EeecCC---CccCCCCEEEEEEcCCCCCEEEEEeC-----------
Q 040307           91 VATSG--------D-SLRLWEIHDDR--TELKS-LLNSNK---TSEFSSAITSFDWAGFDTRRVATCSV-----------  144 (339)
Q Consensus        91 la~~~--------~-~i~iw~~~~~~--~~~~~-~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~-----------  144 (339)
                      +++-.        . .|..++++...  ..... .+....   ...  ..-..|.|.| ++.++++.+.           
T Consensus        84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~--h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~  160 (353)
T 2g8s_A           84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGN--HFGGRLVFDG-KGYLFIALGENNQRPTAQDLD  160 (353)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSS--CCCCCEEECS-SSEEEEEECCTTCGGGGGCTT
T ss_pred             EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCc--ccCccEEECC-CCcEEEEECCCCCCCccCCCC
Confidence            55532        1 56666665431  11111 121111   011  1235799998 8876666543           


Q ss_pred             --CCeEEEEECCCCe------------eeeee-eccCCceeEEEecC-CcEEEEEeCC--CcEEEEECCCCcc-------
Q 040307          145 --DTTCVIWDIDREI------------LETQL-VAHDREVYDISWGG-FNVFASVSGD--CSVRVFDLRDKER-------  199 (339)
Q Consensus       145 --d~~v~i~d~~~~~------------~~~~~-~~~~~~v~~~~~~~-~~~l~~~~~d--~~i~i~d~~~~~~-------  199 (339)
                        .|.|.-++....-            ....+ .++. ....++|++ ...|.++...  +.=.|.-+..+..       
T Consensus       161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~  239 (353)
T 2g8s_A          161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLAT  239 (353)
T ss_dssp             SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBC
T ss_pred             CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCcc
Confidence              2467777764320            11112 2333 357888884 4444444322  1112222211110       


Q ss_pred             -----------------------eeeEEeCCCCCCCeEEEEEecC------CCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          200 -----------------------STIIYENPVQDCPLLRLEWNKA------DPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       200 -----------------------~~~~~~~~~~~~~v~~~~~~p~------~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                                             +...+.   +...+..++|...      .+.++++.-..+. |...++.. ......
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~-~~~~~~  314 (353)
T 2g8s_A          240 WGINYSGFKIPEAKGEIVAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNG-DKVTED  314 (353)
T ss_dssp             SSBCTTSSCCTTCCBSSCTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEET-TEEEEE
T ss_pred             CCCCCCCCccCcccCCCCCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCC-CeEeee
Confidence                                   000011   1235667787631      3555554444444 87777764 332222


Q ss_pred             --E-ecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEec
Q 040307          251 --L-SKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVV  286 (339)
Q Consensus       251 --~-~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~  286 (339)
                        + ......+..+++.|+|. ++++.. .+|  +||.+.
T Consensus       315 ~~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          315 GRILTDRGQRIRDVRTGPDGY-LYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             EEESGGGCCCEEEEEECTTSC-EEEEECSTTE--EEEEEE
T ss_pred             EEcccCCCCceeEEEECCCCc-EEEEEeCCCC--EEEEEe
Confidence              2 12234789999999995 444333 334  455543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.88  E-value=3.3  Score=36.52  Aligned_cols=75  Identities=11%  Similarity=0.008  Sum_probs=52.8

Q ss_pred             CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-----Cc-------eEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307          211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-----NP-------VVVLSKHEGSVNGISWAPLYGRRLCSVADDS  278 (339)
Q Consensus       211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-----~~-------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  278 (339)
                      .....+..+| +|+++++++.-...+.++|+++..     +.       ..+.. -.-.....+|.++| ....+.--|.
T Consensus       323 ksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidS  399 (638)
T 3sbq_A          323 KNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDS  399 (638)
T ss_dssp             SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTT
T ss_pred             CCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecc
Confidence            3556788998 888887776655459999997411     11       11222 23456789999998 5667777999


Q ss_pred             cEEEEEecCC
Q 040307          279 RALIWEVVGP  288 (339)
Q Consensus       279 ~v~iwd~~~~  288 (339)
                      .|.-|++...
T Consensus       400 qvvkWni~~a  409 (638)
T 3sbq_A          400 QVVKWNMEEA  409 (638)
T ss_dssp             EEEEEEHHHH
T ss_pred             eEEEEeccHH
Confidence            9999999864

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.09  E-value=4.6  Score=34.90  Aligned_cols=115  Identities=10%  Similarity=0.013  Sum_probs=59.7

Q ss_pred             CCeEEEEEecCCCC-eEEEEeeCCCeEEEEecCCC--CCceEEEe---------cCCCCeeEEEeccC----CCCeEEEE
Q 040307          211 CPLLRLEWNKADPR-FMATVGMDSNKVVVLDIRFP--TNPVVVLS---------KHEGSVNGISWAPL----YGRRLCSV  274 (339)
Q Consensus       211 ~~v~~~~~~p~~~~-~l~~~~~d~~~i~i~d~~~~--~~~~~~~~---------~~~~~v~~~~~~p~----~~~~l~~~  274 (339)
                      .....|+|.| ++. .|+++...+. |++++....  ..++..+.         ........|+|+|+    + .+.++-
T Consensus        14 ~~P~~~a~~p-dG~~rl~V~er~G~-i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSG-DGSQRLFILEKEGY-VKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSY   90 (463)
T ss_dssp             SSEEEEECCS-SSSCCEEEEETTTE-EEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEE
T ss_pred             CCceEEEECC-CCCeEEEEEeCCce-EEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEE
Confidence            3568999998 664 4555577777 999975321  12233221         11356789999996    4 344443


Q ss_pred             eC--CC--------cEEE--EEecCCCCCCCCCCCCCcccceeee---cccceeEEEEecCCCCceEEEecC
Q 040307          275 AD--DS--------RALI--WEVVGPGYRSGNGGPSGDVEPELCY---QSMAEINVVRWSPLELDWIAIAFV  331 (339)
Q Consensus       275 ~~--dg--------~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~l~~~~~d  331 (339)
                      +.  ++        ..+|  |.+........+   ....+.+...   ........|+|.|||..+++.+..
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d---~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVD---LRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBC---GGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccC---CCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            32  11        1344  444432100000   0001111111   112346799999999766666653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.07  E-value=2.4  Score=34.82  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=66.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeEEEec----CCcEEEEE-eCCCcEEEEECCCCcceeeEEeCC-C
Q 040307          136 TRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYDISWG----GFNVFASV-SGDCSVRVFDLRDKERSTIIYENP-V  208 (339)
Q Consensus       136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~----~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-~  208 (339)
                      +..++.++.||.|.-+|.++|+.+.++... ..++....-.    ++..++.. +.||.|..+|..++...-...... .
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            457889999999999999999988888643 1222222111    12333333 589999999988764322111100 0


Q ss_pred             CCCCeEEEEEec--------CCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          209 QDCPLLRLEWNK--------ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       209 ~~~~v~~~~~~p--------~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      ...++.. .=.|        ..+..+++|+.++. +...|+++ ++.+.++.
T Consensus        90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~t-G~~~W~~~  138 (339)
T 2be1_A           90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLN-GEIISAFG  138 (339)
T ss_dssp             TTCSEEE-ECC----------CCEEEEECEEEEE-EEEEETTT-CCEEEEES
T ss_pred             ecccccc-CCCceeecccccccCCEEEEEecCCE-EEEEECCC-CcEEEEEe
Confidence            1112221 0000        03557778888887 88888877 44455443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.46  E-value=8.2  Score=30.71  Aligned_cols=219  Identities=13%  Similarity=0.140  Sum_probs=114.0

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW  151 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~  151 (339)
                      ..|..++--...     .+++ ..+.|+.|-.+...  .+.......     ..|..++-.  ....++. . ||.|+.|
T Consensus        24 ~~i~~ia~G~~h-----~~~l-~~G~v~~wG~n~~G--qlg~p~~~~-----~~i~~ia~G--~~hs~~l-~-~G~v~~w   86 (282)
T 3qhy_B           24 SGVDAIAGGYFH-----GLAL-KGGKVLGWGANLNG--QLTMPAATQ-----SGVDAIAAG--NYHSLAL-K-DGEVIAW   86 (282)
T ss_dssp             SSCCEEEECSSE-----EEEE-ETTEEEEEECCSSS--TTSCCGGGG-----SCCCEEEEC--SSEEEEE-E-TTEEEEE
T ss_pred             CCCcEEEeCCCe-----EEEE-ECCEEEEEeCCCCC--CCCCCccCC-----CCEEEEEeC--CCEEEEE-E-CCEEEEe
Confidence            357777765544     3444 33388888765432  111000111     467777765  3344444 4 8999999


Q ss_pred             ECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307          152 DIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       152 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                      -......+..-..-...|..++......++. . ||.|+.|-............   ....|..++-.   ....++-. 
T Consensus        87 G~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~~~~---~~~~i~~i~~G---~~~~~~l~-  157 (282)
T 3qhy_B           87 GGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTVPAE---AQSGVTALDGG---VYTALAVK-  157 (282)
T ss_dssp             ECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSCCGG---GGSSEEEEEEC---SSEEEEEE-
T ss_pred             eCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCCCcc---CCCCeEEEEcc---cCEEEEEE-
Confidence            8654322211111234677776654333433 4 99999998765432221111   12457777653   23333334 


Q ss_pred             CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307          232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA  311 (339)
Q Consensus       232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (339)
                      ++. ++.|-.....+.- ....-...|..|+.....  .++.  .||.|..|=...... ..        .|.   ....
T Consensus       158 ~G~-v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gq-lg--------~p~---~~~~  219 (282)
T 3qhy_B          158 NGG-VIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQ-TT--------VPT---EALS  219 (282)
T ss_dssp             TTE-EEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTST-TC--------CCG---GGGS
T ss_pred             CCE-EEEecCCCCCCCC-CceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCC-CC--------CCc---ccCC
Confidence            677 9999766533321 111113467778776654  3444  489999997655430 00        011   1123


Q ss_pred             eeEEEEecCCCCceEEEecCCeEEEE
Q 040307          312 EINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       312 ~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      .|..|+-...  +.++.. |+.|..|
T Consensus       220 ~v~~i~~G~~--h~~al~-~g~v~~w  242 (282)
T 3qhy_B          220 GVSAIASGEW--YSLALK-NGKVIAW  242 (282)
T ss_dssp             SCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred             CceEEEcCCC--EEEEEE-CCEEEEe
Confidence            4666664443  344444 7777776

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.89  E-value=11  Score=30.38  Aligned_cols=138  Identities=10%  Similarity=0.040  Sum_probs=70.9

Q ss_pred             EEcCCCCCEEEEEe----CCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEe-CCCcEEEEECCCCcceeeEE
Q 040307          130 DWAGFDTRRVATCS----VDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVS-GDCSVRVFDLRDKERSTIIY  204 (339)
Q Consensus       130 ~~~~~~~~~l~~~~----~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~  204 (339)
                      .|++ +++.|+-..    ....|..-++.. .....+..+..  ..+.| .++.|.-.+ ....|..-++...... .+.
T Consensus       110 ~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~--~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~  183 (302)
T 3s25_A          110 YASL-IGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL--FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEA-LFY  183 (302)
T ss_dssp             EEEE-ETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC--CCSEE-ETTEEEEECTTTCCEEEEETTTTEEE-EEE
T ss_pred             EEEE-eCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc--eEeeE-ECCEEEEEeCCCceEEEEECCCCCEE-EEe
Confidence            5676 677777665    334555556653 33444443332  22333 345555444 3678888888776533 333


Q ss_pred             eCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC--CCcEE
Q 040307          205 ENPVQDCPLLRLEWNKADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD--DSRAL  281 (339)
Q Consensus       205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~  281 (339)
                      ..     ... ..+.| ++.+|+-....+. .|..-++..  .....+..  ..+  ..|+|++. .|.-++.  .+.|.
T Consensus       184 ~~-----~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt~--~~~--~~~~~~g~-~Iy~~~~~~~~~i~  249 (302)
T 3s25_A          184 DC-----NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINN--PNPVVLTE--ANI--EHYNVYGS-LIFYQRGGDNPALC  249 (302)
T ss_dssp             CS-----CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSS--CCCEECSC--SCE--EEEEEETT-EEEEEECSSSCEEE
T ss_pred             CC-----Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCC--CCeEEEeC--CCc--ceEEECCC-EEEEEECCCCcEEE
Confidence            22     222 34568 6667666554432 255555543  33444432  233  34888884 6665533  23444


Q ss_pred             EEEecC
Q 040307          282 IWEVVG  287 (339)
Q Consensus       282 iwd~~~  287 (339)
                      .-++..
T Consensus       250 ~~~~DG  255 (302)
T 3s25_A          250 VVKNDG  255 (302)
T ss_dssp             EEETTS
T ss_pred             EEECCC
Confidence            444444

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.34  E-value=13  Score=30.95  Aligned_cols=239  Identities=8%  Similarity=-0.078  Sum_probs=111.2

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--CCCCCCCCeEEEeCC---cEEEEeecCC
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--SEETLNPDIVATSGD---SLRLWEIHDD  106 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~~~~la~~~~---~i~iw~~~~~  106 (339)
                      ...|.+|+    ..| +.+++-+.....+....  .......|.+|.+.|  .+     .+++.+..   .-.||...++
T Consensus        22 ~g~l~vgt----~~G-l~~~~~~~~g~~W~~~~--~~~~~~~v~~i~~dp~~~~-----~l~~g~~~g~~g~gl~~s~D~   89 (394)
T 3b7f_A           22 PVMLLVAT----IKG-AWFLASDPARRTWELRG--PVFLGHTIHHIVQDPREPE-----RMLMAARTGHLGPTVFRSDDG   89 (394)
T ss_dssp             CCEEEEEE----TTE-EEEEEECTTSCSEEEEE--EESTTSEEEEEEECSSSTT-----CEEEEEEC--CCEEEEEESST
T ss_pred             CCEEEEEe----cCc-eEEEECCCCCCCceECC--ccCCCCceEEEEECCCCCC-----eEEEEecCCCCCccEEEeCCC
Confidence            34677777    455 55533332223444311  112345699999998  44     56665532   2234444332


Q ss_pred             -c-ceeEEEeec-CCCcc-----CCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCeeeeeeec-------------
Q 040307          107 -R-TELKSLLNS-NKTSE-----FSSAITSFDWAGFD-TRRVATCSVDTTCVIWDIDREILETQLVA-------------  164 (339)
Q Consensus       107 -~-~~~~~~~~~-~~~~~-----~~~~i~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-------------  164 (339)
                       + +........ .....     ....|.++++.|.+ ...|.++...+.|...+- .++....+..             
T Consensus        90 G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~  168 (394)
T 3b7f_A           90 GGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGG  168 (394)
T ss_dssp             TSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCC
T ss_pred             CCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccc
Confidence             2 222211000 00000     01357889998744 566676666666655432 2332222211             


Q ss_pred             ------cCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCC----------CCCCeEEEEEecCCCCeE
Q 040307          165 ------HDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPV----------QDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       165 ------~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~~l  226 (339)
                            ....+.+|.+.+  .+.+..+..++.|...+-. ++.-........          ....+.++.++|.+...|
T Consensus       169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l  247 (394)
T 3b7f_A          169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL  247 (394)
T ss_dssp             C----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred             cccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence                  123577888873  3444445444444433222 121111111000          013588999998656677


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEec--CC---CCeeEEEeccCCCCeEEEEeC-----------CCcEEEEEecCC
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLSK--HE---GSVNGISWAPLYGRRLCSVAD-----------DSRALIWEVVGP  288 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~p~~~~~l~~~~~-----------dg~v~iwd~~~~  288 (339)
                      .++.. +. |...+-  .+.....+..  ..   ..+..++++|..+..|..+..           ++...||.....
T Consensus       248 ~vg~~-~g-l~~s~D--~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~Dg  321 (394)
T 3b7f_A          248 YQQNH-CG-IYRMDR--REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDA  321 (394)
T ss_dssp             EEEET-TE-EEEEET--TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESST
T ss_pred             EEEcC-Ce-EEEeCC--CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCC
Confidence            66654 33 554432  1222222211  11   235678888754344555432           334567766554

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=84.47  E-value=26  Score=32.63  Aligned_cols=150  Identities=10%  Similarity=-0.061  Sum_probs=81.5

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-------CCceeEEEecC--CcEEEEEeCCCc----EE
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-------DREVYDISWGG--FNVFASVSGDCS----VR  190 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~--~~~l~~~~~d~~----i~  190 (339)
                      ..|.+|+++|.+...+.+++..+.|...+ ..++....+..+       ...+.+|++++  .+.+..+..+..    -.
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            68999999997677888888878776554 234433333221       24688999873  344444433211    34


Q ss_pred             EEECCC-CcceeeEEeCCC------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec------CCCC
Q 040307          191 VFDLRD-KERSTIIYENPV------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK------HEGS  257 (339)
Q Consensus       191 i~d~~~-~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~------~~~~  257 (339)
                      ||.... ++.-..+.....      ....+..++++|.+.+.++++...+.   ||-....++.-..+..      ....
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g---l~~S~DgG~TW~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG---IWKSSDRAKTWTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC---EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC---EEEECCCCcccCCCccCccccCCCCC
Confidence            444333 222222211100      01135678888866677777664444   3433333433333321      1245


Q ss_pred             eeEEEeccCCCCeEEEEeCC
Q 040307          258 VNGISWAPLYGRRLCSVADD  277 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~~d  277 (339)
                      +..+.++|..+..++.+..+
T Consensus       171 ~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEEECTTSTTCEEEEESS
T ss_pred             eEEEEECCCCCCEEEEEEcC
Confidence            78899998654466666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 4e-11
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 129 FDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDC 187
                 DTR   + + D +  +WD+   +       H+ ++  I +    N FA+ S D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247
           + R+FD    ++  + Y +    C +  + ++K   R +     D     V D     + 
Sbjct: 249 TCRLFD-LRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDD-FNCNVWDALKA-DR 304

Query: 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283
             VL+ H+  V+ +      G  + + + DS   IW
Sbjct: 305 AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.9 bits (120), Expect = 7e-08
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 69  DHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITS 128
            H      I FFP+          +   + RL+++  D+        +         ITS
Sbjct: 224 GHESDINAICFFPNGNAF---ATGSDDATCRLFDLRADQEL-----MTYSHDNIICGITS 275

Query: 129 FDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDC 187
             ++    R +     D  C +WD  +      L  HD  V  +         A+ S D 
Sbjct: 276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 188 SVRVFD 193
            +++++
Sbjct: 335 FLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 18/198 (9%)

Query: 10  GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFD 69
           G  +            +V       +A GS   D + ++             ++N     
Sbjct: 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTG 252

Query: 70  HPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSE-----FSS 124
           H  +  ++ F    +++   +  +   S++LW + +   +  S   ++ T E        
Sbjct: 253 HKDSVYSVVFTRDGQSV---VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGF------- 177
            + S      +   + + S D   + WD         L  H   V  ++           
Sbjct: 310 FVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 178 NVFASVSGDCSVRVFDLR 195
           NVFA+ SGDC  R++  +
Sbjct: 369 NVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 18/172 (10%)

Query: 87  NPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145
              I A S D ++R+W+        +    +   +    ++ S  +   D + V + S+D
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLD 275

Query: 146 TTCVIWDIDREILETQLVAHDREVYDISWGGF-------------NVFASVSGDCSVRVF 192
            +  +W++     ++     +    ++++ G                  S S D  V  +
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

Query: 193 DLRDKERSTII--YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242
           D +      ++  + N V    +        +    AT   D  K  +   +
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD-CKARIWKYK 386

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 9e-08
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 128 SFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDC 187
           + +   FD + + + S D T  +W+         L  H R +  + +    +  S S D 
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDN 198

Query: 188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPTN 246
           ++R++D+       ++  +      +           +   + + D    +       T 
Sbjct: 199 TIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284
            +  L +H G V  + +      ++ S + D   LIW+
Sbjct: 259 CLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 120 SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174
           SE S  +    +   D +++ +   D T  IWD +    +  L  H   V  + +
Sbjct: 12  SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 25/192 (13%), Positives = 61/192 (31%), Gaps = 14/192 (7%)

Query: 100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE 159
           +   +D   ++                       FD   V + S+DT+  +WD++     
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 210

Query: 160 TQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219
             L  H      +     N+  S + D +V+++D++  +    +      +     +   
Sbjct: 211 HTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQC---LQTLQGPNKHQSAVTCL 266

Query: 220 KADPRFMATVGMDSNKVVVLDIR----FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA 275
           + +  F+ T   D   V + D++          +      G V  I  +          +
Sbjct: 267 QFNKNFVITSSDD-GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGS 324

Query: 276 DD----SRALIW 283
            +    ++ L+ 
Sbjct: 325 RNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174
              IT   + G    R+ + S D T  +W          LV H   V+    
Sbjct: 17  DHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 28/171 (16%)

Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGF----------------- 177
           D   +A+CS D T  +W +  +  + +L  H   V  ISW                    
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213

Query: 178 ----NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233
                   S S D +++++D+        +      D  +  + ++    +F+ +   D 
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHS-GGKFILSCADD- 268

Query: 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284
             + V D +     +  L+ HE  V  + +       + + + D    +WE
Sbjct: 269 KTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 5e-06
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 91  VATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI 150
             +   ++++W+       L +L+         + +    +     + + +C+ D T  +
Sbjct: 222 SGSRDKTIKMWD-VSTGMCLMTLVGH------DNWVRGVLFHS-GGKFILSCADDKTLRV 273

Query: 151 WDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFD 193
           WD   +     L AH+  V  + +        + S D +V+V++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 7/163 (4%)

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFAS 182
            S +T   +       + + S D T  +WD +    E  L  H   V DIS+       +
Sbjct: 17  RSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 183 VSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242
                                      +           +   + +   D    +     
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVS---SVSIMPNGDHIVSASRDKTIKM--WEV 130

Query: 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285
                V   + H   V  +      G  + S ++D    +W V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVV 172

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 5/169 (2%)

Query: 120 SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID--REILETQLVAHDREVYDISWGGF 177
           S     I+   W   D  ++A C  +    I++    + +   +L  H+ +V  + W   
Sbjct: 4   SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 178 -NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKV 236
            N   +   D +  V+ L+ +     +    +                 + +     +  
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285
                        +      +V  + W P     L + + D +  I+  
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSA 170

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 131 WAGFDTRRVATCSVDTTCVIWDIDR-EILETQLVAHDREVYDISWGGFNVFASVSGDCSV 189
               +   VAT S+DT   I+ + R   +   L AH   V ++ W   +   S   D  +
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACI 281

Query: 190 RVFD 193
           + ++
Sbjct: 282 KRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRAL 281
           +   +AT  +D   + +  ++ P   +  L+ H+  VN + W       L S   D+   
Sbjct: 226 EEDLVATGSLD-TNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIK 282

Query: 282 IWEVV 286
            W VV
Sbjct: 283 RWNVV 287

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 129 FDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG----GFNVFASVS 184
           F  +  D+++ AT   D T  +WD+       +     +++ +   G    G     S+S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 185 GDCSVRVFDL 194
            D ++  ++L
Sbjct: 316 LDGTLNFYEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFAS 182
           +S IT      F+   V T + D    ++D   +    QL  HD  V+ + +    +  S
Sbjct: 13  TSVITCLQ---FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 183 VSGDC 187
            S D 
Sbjct: 70  GSTDR 74

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 7/72 (9%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDI-DREILETQLVAHDREVYDISWGGFNVFAS 182
           + +++          + + S +    I+++   +++   ++    +++ +++ G  + A+
Sbjct: 282 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAA 340

Query: 183 VSGDCSVRVFDL 194
           V  D    +  L
Sbjct: 341 VEKDGQSFLEIL 352

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 7/61 (11%), Positives = 13/61 (21%), Gaps = 2/61 (3%)

Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGF-NVFASVSGDCSVRVFD 193
             +   +   D     W                 V             + SGD    V++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGAS-IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

Query: 194 L 194
           +
Sbjct: 335 V 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRAL 281
             ++  + G D N +       P    +  SK   SV     +    + + + + D +A 
Sbjct: 276 CGKWFVSTGKD-NLLNAWRT--PYGASIFQSKESSSVLSCDISV-DDKYIVTGSGDKKAT 331

Query: 282 IWEVV 286
           ++EV+
Sbjct: 332 VYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 14/87 (16%)

Query: 68  FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
             H     ++ F    +      V+T  D  L  W      +           S+ SS++
Sbjct: 262 HLHESCVLSLKFAYCGKWF----VSTGKDNLLNAWRTPYGASI--------FQSKESSSV 309

Query: 127 TSFDWAGFDTRRVATCSVDTTCVIWDI 153
            S D +  D + + T S D    ++++
Sbjct: 310 LSCDIS-VDDKYIVTGSGDKKATVYEV 335

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 2e-04
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 2/110 (1%)

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDI-DREILETQLVAHDREVYDISWGGFNVFA 181
           + AIT+   +  D + + +   +     WDI            H   +  I         
Sbjct: 12  NKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231
           +VS D  ++V         +            L L  +      +A    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 9/58 (15%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 140 ATCSVDTTCVIWDIDREILETQLVA---HDREVYDISWGGFNVFASVSGDCSVRVFDL 194
           AT S+D + ++W++++      ++        V  + W       S   D +++ +++
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDR---EVYDISWGGFNVFASVSGDCSVRV 191
           D  ++A+ S D T  IW++    +E  +    R   +   I W       S+S +  +  
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFINF 307

Query: 192 FDL 194
            + 
Sbjct: 308 VNP 310

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 23/196 (11%), Positives = 43/196 (21%), Gaps = 11/196 (5%)

Query: 12  HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP 71
             + A    S             L   S      +          + +  +   +I   P
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLS--YRSLDPSPDRVVLNFSFEVVSKPFVIPLIP 227

Query: 72  YTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDW 131
            +P      P   T        +    R   I+ D  + +         E S  I S   
Sbjct: 228 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM----IIPLESSILIYSVPV 283

Query: 132 AGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVR 190
            G               + +D+    +          + D+              D  + 
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIY 339

Query: 191 VFDLRDKERSTIIYEN 206
            F L   E    +  +
Sbjct: 340 TFPLEKPEDERTVETD 355

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 17/101 (16%)

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL------------VAHDREVY 170
            + I S            +CS D    +WD      E               + H   + 
Sbjct: 14  DADIFSVS---ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 171 DISWGGFN--VFASVSGDCSVRVFDLRDKERSTIIYENPVQ 209
            I    F   + A+ S    +  + +  ++ +  +    + 
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 5/55 (9%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA---HDREVYDISW 174
              I+           +   S D +  ++  D +     L+    +   +   ++
Sbjct: 11  KDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.57
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.53
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.5
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.49
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.24
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.22
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.12
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.91
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.85
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.33
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.26
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.93
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.93
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.74
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.41
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.33
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.98
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.95
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.45
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.16
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.01
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.8
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.61
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.21
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.82
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.48
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.37
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.16
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.82
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.85
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.69
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.07
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	86.72
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.65
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	82.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.61
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.32

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-47  Score=317.78  Aligned_cols=291  Identities=16%  Similarity=0.182  Sum_probs=252.3

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      .+.+..+.|..+|.+++|+|+   +++||+|+     ||.|+||++................|.+.|.+++|+|++    
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~~---g~~latg~-----dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg----  109 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISNP---TRHVYTGG-----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG----  109 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECSS---SSEEEEEC-----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS----
T ss_pred             ceEEEECCCCCcEEEEEECCC---CCEEEEEE-----CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC----
Confidence            456778889999999999999   99999988     899999998765543332222235789999999999999    


Q ss_pred             CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                       ++|++++ | .|++||+..........+..|.     ..+..+.|+| ++.++++++.|+.|++|++++++.......|
T Consensus       110 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         110 -CTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             -SEEEEEESSSEEEEEECCCC--EEEEEEECSS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             -CEEEEeeccccccccccccccccccccccccc-----cccccccccc-ccccccccccccccccccccccccccccccc
Confidence             8888886 5 9999999877655677777877     8999999998 9999999999999999999999988888899


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ...|.+++|+ +++.+++++.|+.+++||+++++......    +...|.+++|+| ++++|++++.++. +++||++..
T Consensus       183 ~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----~~~~i~~l~~~~-~~~~l~~~~~d~~-i~i~d~~~~  256 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGEWLAVGMESSN-VEVLHVNKP  256 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTSS
T ss_pred             ccccccccccccccccccccccccccccccccceeecccc----cccceEEEEEcc-cccccceeccccc-ccccccccc
Confidence            9999999999 78999999999999999999887544332    457899999998 8999999999999 999999863


Q ss_pred             CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307          245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD  324 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  324 (339)
                       . ......|...|++++|+|++ ++|++++.||.|++||+...+             ++....|...|.+++|+|++++
T Consensus       257 -~-~~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~-------------~~~~~~~~~~v~~~~~s~d~~~  320 (337)
T d1gxra_         257 -D-KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA-------------SIFQSKESSSVLSCDISVDDKY  320 (337)
T ss_dssp             -C-EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------------EEEEEECSSCEEEEEECTTSCE
T ss_pred             -c-cccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCC-------------EEEEccCCCCEEEEEEeCCCCE
Confidence             3 45677899999999999999 699999999999999999887             6666778899999999999999


Q ss_pred             eEEEecCCeEEEEeC
Q 040307          325 WIAIAFVNKLQLLKV  339 (339)
Q Consensus       325 l~~~~~d~~v~~w~v  339 (339)
                      |++++.|+.|+||+|
T Consensus       321 l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         321 IVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEEE
Confidence            999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-42  Score=283.94  Aligned_cols=281  Identities=15%  Similarity=0.220  Sum_probs=244.1

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.++|++++|+|+   +++||+|+    .||.|+||++....  ...  .+ ..|...|.+++|+|++     .+++++
T Consensus        15 GH~~~I~~l~~sp~---~~~l~s~s----~Dg~i~iWd~~~~~--~~~--~~-~~h~~~V~~~~~~~~~-----~~~~~~   77 (317)
T d1vyhc1          15 GHRSPVTRVIFHPV---FSVMVSAS----EDATIKVWDYETGD--FER--TL-KGHTDSVQDISFDHSG-----KLLASC   77 (317)
T ss_dssp             CCSSCEEEEEECSS---SSEEEEEE----SSSCEEEEETTTCC--CCE--EE-CCCSSCEEEEEECTTS-----SEEEEE
T ss_pred             CCCCCeEEEEEcCC---CCEEEEEe----CCCeEEEEECCCCC--EEE--EE-eCCCCcEEEEeeeccc-----cccccc
Confidence            48899999999999   99999999    79999998876543  332  33 5799999999999999     788887


Q ss_pred             CC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307           95 GD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI  172 (339)
Q Consensus        95 ~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~  172 (339)
                      ..  .+.+|+....+  ....+..|.     ..+.++.|+| +++.+++++.|+.+++||+++++.+..+..|...+.++
T Consensus        78 ~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (317)
T d1vyhc1          78 SADMTIKLWDFQGFE--CIRTMHGHD-----HNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  149 (317)
T ss_dssp             ETTSCCCEEETTSSC--EEECCCCCS-----SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             ccccccccccccccc--ccccccccc-----ccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceee
Confidence            74  88899988776  666667776     8899999998 99999999999999999999999999999999999999


Q ss_pred             Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-------------------CCCeEEEEeeC
Q 040307          173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-------------------DPRFMATVGMD  232 (339)
Q Consensus       173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------------------~~~~l~~~~~d  232 (339)
                      +|+ ++++|++++.|+.|++|++++.+....+.   .+...+.++.|+|.                   .+.++++++.|
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  226 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  226 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             ecccCCCEEEEEeCCCeEEEEeeccceeeEEEe---cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence            999 78999999999999999999887544332   25678888888873                   24578899999


Q ss_pred             CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccce
Q 040307          233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAE  312 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (339)
                      +. |++||++. .+++..+.+|...|.+++|+|++ .+|++++.||.|+|||+...+            ......+|...
T Consensus       227 ~~-i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~h~~~  291 (317)
T d1vyhc1         227 KT-IKMWDVST-GMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR------------CMKTLNAHEHF  291 (317)
T ss_dssp             SE-EEEEETTT-TEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC------------CCEEEECCSSC
T ss_pred             CE-EEEEECCC-CcEEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCc------------EEEEEcCCCCC
Confidence            98 99999987 67889999999999999999999 699999999999999999877            23355679999


Q ss_pred             eEEEEecCCCCceEEEecCCeEEEEe
Q 040307          313 INVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       313 i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      |++++|+|+++.|++++.|++|+||+
T Consensus       292 V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         292 VTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-41  Score=282.16  Aligned_cols=276  Identities=16%  Similarity=0.234  Sum_probs=226.1

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D   96 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~   96 (339)
                      +.+..++++|+   ++.||++.     ++.|.+|+++......    .+ .+|...|++++|+|++     ++||+|+ |
T Consensus        18 ~~~~~~a~~~~---g~~l~~~~-----~~~v~i~~~~~~~~~~----~~-~~H~~~v~~~~~sp~g-----~~latg~~d   79 (311)
T d1nr0a1          18 GTAVVLGNTPA---GDKIQYCN-----GTSVYTVPVGSLTDTE----IY-TEHSHQTTVAKTSPSG-----YYCASGDVH   79 (311)
T ss_dssp             TCCCCCEECTT---SSEEEEEE-----TTEEEEEETTCSSCCE----EE-CCCSSCEEEEEECTTS-----SEEEEEETT
T ss_pred             CCeEEEEEcCC---CCEEEEEe-----CCEEEEEECCCCceeE----EE-cCCCCCEEEEEEeCCC-----CeEeccccC
Confidence            45678999999   99999988     7889998876433222    22 6899999999999999     8999987 5


Q ss_pred             -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307           97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus        97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                       .|+||++.+.+......+..|.     .+|.+++|+| ++++|++++.  +..+++|++++++....+.+|...|++++
T Consensus        80 g~i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~  153 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIPVFS-----GPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD  153 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEECSS-----SCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEE
T ss_pred             ceEeeeeeecccccccccccccc-----Cccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence             9999999988755566778887     8999999998 8999999886  45699999999999999999999999999


Q ss_pred             ec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307          174 WG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL  251 (339)
Q Consensus       174 ~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~  251 (339)
                      |+ +++ .|++|+.|+.|++||+++.+.... ..  .|..+|.++.|+| +++++++++.|+. +++||.+. ......+
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~-~~--~~~~~i~~v~~~p-~~~~l~~~~~d~~-v~~~d~~~-~~~~~~~  227 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKST-FG--EHTKFVHSVRYNP-DGSLFASTGGDGT-IVLYNGVD-GTKTGVF  227 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTBEEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-CCEEEEC
T ss_pred             ccccceeeecccccccccccccccccccccc-cc--cccccccccccCc-ccccccccccccc-cccccccc-ccccccc
Confidence            99 455 588999999999999998764333 32  3678999999998 8999999999999 99999987 3334433


Q ss_pred             -------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-ecc---cceeEEEEecC
Q 040307          252 -------SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQS---MAEINVVRWSP  320 (339)
Q Consensus       252 -------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~i~~~~~~p  320 (339)
                             .+|...|++++|+|++ ++|++|+.||.|+|||+++.+             ++.. ..+   ...+.++.|++
T Consensus       228 ~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~-------------~~~~l~~~~~~~~~~~~~~~~~  293 (311)
T d1nr0a1         228 EDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLK-------------VEKTIPVGTRIEDQQLGIIWTK  293 (311)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSGGGCEEEEEECS
T ss_pred             cccccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCc-------------EEEEEECCCCccceEEEEEecC
Confidence                   3578899999999999 699999999999999998876             3322 222   23455666654


Q ss_pred             CCCceEEEecCCeEEEEeC
Q 040307          321 LELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       321 ~~~~l~~~~~d~~v~~w~v  339 (339)
                        ..+++++.||.|++|+.
T Consensus       294 --~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         294 --QALVSISANGFINFVNP  310 (311)
T ss_dssp             --SCEEEEETTCCEEEEET
T ss_pred             --CEEEEEECCCEEEEEeC
Confidence              47999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-41  Score=289.80  Aligned_cols=292  Identities=16%  Similarity=0.171  Sum_probs=234.1

Q ss_pred             eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccc-------------eeeEeecCCCCceEE
Q 040307           11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA-------------DNRLIFDHPYTPTNI   77 (339)
Q Consensus        11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~-------------~~~~~~~~~~~v~~l   77 (339)
                      ...++|.+.|+|++|+|+   |++||+|+     |+.|+||++.........             .......|...|+++
T Consensus        56 ~~~~~H~~~V~~l~fs~d---g~~lasg~-----d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  127 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSND---GEYLATGC-----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV  127 (388)
T ss_dssp             EEEEECSSCCCEEEECTT---SSEEEEEC-----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEE
T ss_pred             EeeCCCCCcEEEEEECCC---CCEEEEEe-----CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEE
Confidence            344578999999999999   99999988     899999887643221110             001123578889999


Q ss_pred             EEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 040307           78 AFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR  155 (339)
Q Consensus        78 ~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~  155 (339)
                      +|+|++     ++|++|+ | .|++|+...++  ....+.+|.     ..|.++.|++ ++..+++++.++.+++||.++
T Consensus       128 ~~s~~~-----~~l~s~~~dg~v~i~~~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         128 CFSPDG-----KFLATGAEDRLIRIWDIENRK--IVMILQGHE-----QDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             EECTTS-----SEEEEEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             EECCCC-----Ccceecccccccccccccccc--ccccccccc-----cccccccccc-ccccccccccceeeeeeeccc
Confidence            999999     8999887 4 99999999886  777788887     8999999998 899999999999999999999


Q ss_pred             CeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEEecCCCCeEEEE
Q 040307          156 EILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                      .........+. ...++.+.  ++++|++++.|+.|++||.++......+..    ...|...|.+++|+| ++++|+++
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~  272 (388)
T d1erja_         195 GQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSG  272 (388)
T ss_dssp             TEEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEE
T ss_pred             ccccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEE
Confidence            88777766544 45555665  688999999999999999998875443321    224678899999998 89999999


Q ss_pred             eeCCCeEEEEecCCCC-----------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC
Q 040307          230 GMDSNKVVVLDIRFPT-----------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS  298 (339)
Q Consensus       230 ~~d~~~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  298 (339)
                      +.|+. |++||++...           ........|...|.+++|+|++ .+|++|+.||.|++||+.+++         
T Consensus       273 ~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~---------  341 (388)
T d1erja_         273 SLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN---------  341 (388)
T ss_dssp             ETTSE-EEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC---------
T ss_pred             ECCCc-EEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc---------
Confidence            99998 9999997532           2234556788999999999999 699999999999999999887         


Q ss_pred             CcccceeeecccceeEEEEe------cCCCCceEEEecCCeEEEEeC
Q 040307          299 GDVEPELCYQSMAEINVVRW------SPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       299 ~~~~~~~~~~~~~~i~~~~~------~p~~~~l~~~~~d~~v~~w~v  339 (339)
                         ......+|...|.++++      +|++.+|++++.||+|+||++
T Consensus       342 ---~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         342 ---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             ---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             ---EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence               23356679999999874      678888889999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-41  Score=285.47  Aligned_cols=298  Identities=14%  Similarity=0.187  Sum_probs=231.6

Q ss_pred             ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307           16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG   95 (339)
Q Consensus        16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~   95 (339)
                      ..+||+|++|+|+   +++||+|+    .++.|+||+++..  ++.....+ .+|.++|.+++|+|++     ++|++++
T Consensus         6 ~~~pIt~~~~s~d---g~~la~~~----~~~~i~iw~~~~~--~~~~~~~l-~gH~~~V~~l~fsp~~-----~~l~s~s   70 (371)
T d1k8kc_           6 LVEPISCHAWNKD---RTQIAICP----NNHEVHIYEKSGN--KWVQVHEL-KEHNGQVTGVDWAPDS-----NRIVTCG   70 (371)
T ss_dssp             CSSCCCEEEECTT---SSEEEEEC----SSSEEEEEEEETT--EEEEEEEE-ECCSSCEEEEEEETTT-----TEEEEEE
T ss_pred             CCCCeEEEEECCC---CCEEEEEe----CCCEEEEEECCCC--CEEEEEEe-cCCCCCEEEEEECCCC-----CEEEEEE
Confidence            4589999999999   99999999    7999999887643  33332234 6899999999999999     8899887


Q ss_pred             -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee----eeeeeccCCce
Q 040307           96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL----ETQLVAHDREV  169 (339)
Q Consensus        96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~~~v  169 (339)
                       | .|+||++.+++......+.+|.     ..|++++|+| +++.|++++.|+.|++|+++....    ......|...|
T Consensus        71 ~D~~i~vWd~~~~~~~~~~~~~~~~-----~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTWKPTLVILRIN-----RAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCS-----SCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             CCCeEEEEeeccccccccccccccc-----cccccccccc-ccccceeecccCcceeeeeeccccccccccccccccccc
Confidence             5 9999999988755666666776     8999999998 999999999999999999876542    23345688899


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCcce---------------eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERS---------------TIIYENPVQDCPLLRLEWNKADPRFMATVGMDS  233 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~---------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~  233 (339)
                      .+++|+ ++.+|++++.|+.|++||.......               ........|...+.+++|+| ++++|++++.|+
T Consensus       145 ~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~  223 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDS  223 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTT
T ss_pred             ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCC
Confidence            999999 7899999999999999998754311               12334445778899999998 899999999999


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC---------CCCCCCCC------
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY---------RSGNGGPS------  298 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~------  298 (339)
                      . |++||+.. ...+..+..|..+|.+++|+|++ .+|++| .|+.+++|.......         .+......      
T Consensus       224 ~-i~iwd~~~-~~~~~~~~~~~~~v~s~~fs~d~-~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (371)
T d1k8kc_         224 T-VCLADADK-KMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  299 (371)
T ss_dssp             E-EEEEEGGG-TTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             c-ceEEeeec-ccceeeeecccccceeeeecCCC-CEEEEE-cCCceEEEEeeCCCceEEEeeeecCcccccccccccee
Confidence            8 99999987 67788999999999999999998 466654 578888887765431         00000000      


Q ss_pred             ------------Ccccc--eeeecccceeEEEEecCCCCc----eEEEecCCeEEEEeC
Q 040307          299 ------------GDVEP--ELCYQSMAEINVVRWSPLELD----WIAIAFVNKLQLLKV  339 (339)
Q Consensus       299 ------------~~~~~--~~~~~~~~~i~~~~~~p~~~~----l~~~~~d~~v~~w~v  339 (339)
                                  .....  .....|.+.|+++++.|.+..    +++++.||.|++|++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         300 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             eEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                        00000  011247889999999886543    668899999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-39  Score=265.92  Aligned_cols=282  Identities=15%  Similarity=0.176  Sum_probs=218.2

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|..+|++++|+|+   +++||+|+    .||.|++|++....  ...  .+...|...|.+++|+|++     +++++
T Consensus         9 ~GH~~~V~~l~~s~d---g~~l~s~s----~Dg~v~vWd~~~~~--~~~--~~~~~h~~~v~~v~~~~~g-----~~~~~   72 (299)
T d1nr0a2           9 YGHNKAITALSSSAD---GKTLFSAD----AEGHINSWDISTGI--SNR--VFPDVHATMITGIKTTSKG-----DLFTV   72 (299)
T ss_dssp             CCCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETTTCC--EEE--CSSCSCSSCEEEEEECTTS-----CEEEE
T ss_pred             CCCCCCcEEEEECCC---CCEEEEEc----CCCeEEEEECCCCc--EEE--EEcCCCCCcEEEEEeeccc-----eeecc
Confidence            458899999999999   99999999    79999998876432  222  2234789999999999999     88888


Q ss_pred             eCC-cEEEEeecCCccee-EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           94 SGD-SLRLWEIHDDRTEL-KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        94 ~~~-~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      +.| .+++|+........ ......+.     ..+.+++|+| ++.++++++ ++.+++|+...  .....  ....+.+
T Consensus        73 ~~d~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~  141 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVDSSKAVANKLS-----SQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSC  141 (299)
T ss_dssp             ETTTEEEEECSSSSSSCTTSCCEEECS-----SCEEEEEECT-TSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEE
T ss_pred             cceeeEEEeccCCcccccccccccccc-----cccccccccc-ccccccccc-ccccccccccc--ccccc--ccccccc
Confidence            887 99999987654211 11223333     6889999998 888776655 57899999543  22222  3456789


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC--ce
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN--PV  248 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--~~  248 (339)
                      ++|+ ++++|++++.|+.|++||+++.+........  |...|.+++|+| ++++|++++.++. |++||+.....  ..
T Consensus       142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~d~~-i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSN-NGAFLVATDQSRK-VIPYSVANNFELAHT  217 (299)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE--CSSCEEEEEECT-TSSEEEEEETTSC-EEEEEGGGTTEESCC
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccccccccccc-ccccccccccccc-ccccccccccccccc
Confidence            9999 7899999999999999999887644433333  678999999998 8999999999999 99999876332  23


Q ss_pred             EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec-ccceeEEEEecCCCCceE
Q 040307          249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ-SMAEINVVRWSPLELDWI  326 (339)
Q Consensus       249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~~~~p~~~~l~  326 (339)
                      ..+..|...|++++|+|++ .+|++|+.||.|++||++...           ..+. .... +...|..+.|. +++.|+
T Consensus       218 ~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~-~~~~l~  284 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPS-----------DHPIIIKGAHAMSSVNSVIWL-NETTIV  284 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTT-----------SCCEEETTSSTTSCEEEEEEE-ETTEEE
T ss_pred             ccccccccccccccccccc-cceEEEcCCCEEEEEECCCCC-----------cceEEEecCCCCCcEEEEEEC-CCCEEE
Confidence            4566789999999999999 699999999999999998876           1122 2223 34567777665 456799


Q ss_pred             EEecCCeEEEEeC
Q 040307          327 AIAFVNKLQLLKV  339 (339)
Q Consensus       327 ~~~~d~~v~~w~v  339 (339)
                      +++.|+.|++|+|
T Consensus       285 s~s~D~~i~iWdl  297 (299)
T d1nr0a2         285 SAGQDSNIKFWNV  297 (299)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EEeCCCEEEEEec
Confidence            9999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-38  Score=262.28  Aligned_cols=281  Identities=16%  Similarity=0.238  Sum_probs=231.6

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.++|++++|+|+   +++||+|+    .||.|+||++...  ....  .+ ..|...|.+++|+|++     .+++++
T Consensus        53 GH~~~I~~l~~s~~---~~~l~sgs----~Dg~v~iWd~~~~--~~~~--~~-~~~~~~v~~v~~~~~~-----~~l~~~  115 (340)
T d1tbga_          53 GHLAKIYAMHWGTD---SRLLVSAS----QDGKLIIWDSYTT--NKVH--AI-PLRSSWVMTCAYAPSG-----NYVACG  115 (340)
T ss_dssp             CCSSCEEEEEECTT---SSEEEEEE----TTTEEEEEETTTT--EEEE--EE-ECSCSCEEEEEECTTS-----SEEEEE
T ss_pred             CCCCCEEEEEECCC---CCEEEEEE----CCCceeeeecccc--eeEE--EE-ecccccEEeeEeeccc-----eeeeee
Confidence            38899999999999   99999999    7999999877643  3332  33 5789999999999999     888888


Q ss_pred             C-C-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307           95 G-D-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      + + .+++|+.....  ......+.+|.     .........  ....+.....+.....+.............+...+.
T Consensus       116 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (340)
T d1tbga_         116 GLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM  188 (340)
T ss_dssp             ETTCCEEEEESSSSCSCCCEEEEECCCS-----SCEEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             cccceeecccccccccccccceeccccc-----ccccccccc--cccccccccccccccccccccccccccccccceeEe
Confidence            7 4 99999987654  23445566665     555555554  567888889999999999988877777777888888


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      ...+. ...++++++.|+.|++||+++.+.... +.  .|...|.+++|+| ++++|++++.|+. |++||++. ...+.
T Consensus       189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~-~~--~h~~~i~~v~~~p-~~~~l~s~s~d~~-i~~~~~~~-~~~~~  262 (340)
T d1tbga_         189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FT--GHESDINAICFFP-NGNAFATGSDDAT-CRLFDLRA-DQELM  262 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-TEEEE
T ss_pred             eeccccccceeEEeecCceEEEEECCCCcEEEE-Ee--CCCCCeEEEEECC-CCCEEEEEeCCCe-EEEEeecc-ccccc
Confidence            88888 788999999999999999998874443 33  3778999999998 8999999999999 99999987 43444


Q ss_pred             EE--ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307          250 VL--SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA  327 (339)
Q Consensus       250 ~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  327 (339)
                      .+  ..+...|.+++|+|++ .+|++|+.||.|++||+...+            ......+|...|++++|+|++++|++
T Consensus       263 ~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~------------~~~~~~~H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         263 TYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD------------RAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             ccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            43  3456789999999999 699999999999999998877            23355679999999999999999999


Q ss_pred             EecCCeEEEEe
Q 040307          328 IAFVNKLQLLK  338 (339)
Q Consensus       328 ~~~d~~v~~w~  338 (339)
                      ++.||.|+||+
T Consensus       330 ~s~Dg~v~iWd  340 (340)
T d1tbga_         330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             EccCCEEEEeC
Confidence            99999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.9e-38  Score=260.55  Aligned_cols=245  Identities=13%  Similarity=0.155  Sum_probs=203.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|..+|++++|+|+   +++||+|+    .||.|+||++.........  .+ ..|..+|.+++|+|++     ++|+++
T Consensus        56 ~H~~~v~~~~~sp~---g~~latg~----~dg~i~iwd~~~~~~~~~~--~~-~~~~~~v~~v~~s~d~-----~~l~~~  120 (311)
T d1nr0a1          56 EHSHQTTVAKTSPS---GYYCASGD----VHGNVRIWDTTQTTHILKT--TI-PVFSGPVKDISWDSES-----KRIAAV  120 (311)
T ss_dssp             CCSSCEEEEEECTT---SSEEEEEE----TTSEEEEEESSSTTCCEEE--EE-ECSSSCEEEEEECTTS-----CEEEEE
T ss_pred             CCCCCEEEEEEeCC---CCeEeccc----cCceEeeeeeecccccccc--cc-ccccCccccccccccc-----cccccc
Confidence            57899999999999   99999999    7999999988776554433  33 5789999999999999     777777


Q ss_pred             CC----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeeeeccCCce
Q 040307           95 GD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILETQLVAHDREV  169 (339)
Q Consensus        95 ~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v  169 (339)
                      ++    .++||++++++  ....+.+|.     ..|++++|+| +++ .|++|+.|+.|++||+++++....+..|...|
T Consensus       121 ~~~~~~~~~v~~~~~~~--~~~~l~~h~-----~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i  192 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTGT--SNGNLTGQA-----RAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV  192 (311)
T ss_dssp             ECCSSCSEEEEETTTCC--BCBCCCCCS-----SCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred             ccccccccccccccccc--ccccccccc-----cccccccccc-cceeeecccccccccccccccccccccccccccccc
Confidence            52    68999999887  667788887     8999999998 665 58899999999999999999999999999999


Q ss_pred             eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      +++.|+ ++++|++++.|+.|++||++.......+..    ...|...|.+++|+| ++++|++|+.|+. |+|||+++ 
T Consensus       193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~-v~iwd~~t-  269 (311)
T d1nr0a1         193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKT-IKIWNVAT-  269 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSE-EEEEETTT-
T ss_pred             cccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCe-EEEEECCC-
Confidence            999999 789999999999999999998875443322    123678899999998 8899999999998 99999987 


Q ss_pred             CCceEEEecCCC-CeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          245 TNPVVVLSKHEG-SVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       245 ~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      .+++.++..|.. ....+.+.+++ ..|++++.||.|++||++
T Consensus       270 ~~~~~~l~~~~~~~~~~~~~~~~~-~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         270 LKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFINFVNPE  311 (311)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECS-SCEEEEETTCCEEEEETT
T ss_pred             CcEEEEEECCCCccceEEEEEecC-CEEEEEECCCEEEEEeCC
Confidence            667788876653 22333444455 378999999999999964

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-38  Score=261.35  Aligned_cols=287  Identities=14%  Similarity=0.158  Sum_probs=222.3

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-CCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-PYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      ..+++++|+|+   ++.||+++     +..+.++.++...........+ .+| ...|++++|+|+..+   .+||+|+ 
T Consensus        18 ~~~t~l~~~~~---~~~la~~~-----~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g---~~lasgs~   85 (325)
T d1pgua1          18 NFTTHLSYDPT---TNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGS---QYLCSGDE   85 (325)
T ss_dssp             TCCCCCEEETT---TTEEEEEE-----TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTC---CEEEEEET
T ss_pred             CCeEEEEECCC---CCEEEEEe-----CCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCC---CEEEEEeC
Confidence            45789999999   99999988     4555555566555444433344 455 568999999985421   7898887 


Q ss_pred             C-cEEEEeecCCcce------eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccC
Q 040307           96 D-SLRLWEIHDDRTE------LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        96 ~-~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                      | +|+|||+..++..      ....+..|.     .+|.+++|+| ++++|++++.  ++.+++|+.++++.+..+.+|.
T Consensus        86 Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-----~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          86 SGKVIVWGWTFDKESNSVEVNVKSEFQVLA-----GPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             TSEEEEEEEEEEGGGTEEEEEEEEEEECCS-----SCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             CCCEEEeeecCCcceeeeeccccccccccc-----CcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeecc
Confidence            5 9999999765411      112234444     8999999998 8898887764  6789999999999999999999


Q ss_pred             CceeEEEec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          167 REVYDISWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       167 ~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ..|++++|+ ++ .++++++.|+.+++||.+..+..........+...|.+++|+|+.+.+|++++.|+. |++||++. 
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~-  237 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-  237 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-
T ss_pred             cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeecc-
Confidence            999999999 44 467889999999999998877555555555677889999999977899999999999 99999987 


Q ss_pred             CCceEEEecCCCCeeEEEec---cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-e--ecccceeE--EE
Q 040307          245 TNPVVVLSKHEGSVNGISWA---PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-C--YQSMAEIN--VV  316 (339)
Q Consensus       245 ~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~--~~  316 (339)
                      .+.+..+.+|...+.++.|+   |++ .+|++++.|+.|+|||++..+             ++. .  ..+...+.  ++
T Consensus       238 ~~~~~~l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~  303 (325)
T d1pgua1         238 GEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSK-------------CVQKWTLDKQQLGNQQVGV  303 (325)
T ss_dssp             CCEEEECCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTE-------------EEEEEECCTTCGGGCEEEE
T ss_pred             ccccccccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCC-------------EEEEEEecCCcccCeEEEE
Confidence            67788999998888777766   677 599999999999999999876             332 2  22333333  44


Q ss_pred             EecCCCCceEEEecCCeEEEEeC
Q 040307          317 RWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       317 ~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .|.+++ .+++++.||.|++|+|
T Consensus       304 ~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         304 VATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETT-EEEEEETTSCEEEEET
T ss_pred             EECCCC-EEEEEECCCEEEEEEC
Confidence            555544 5889999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-37  Score=260.77  Aligned_cols=280  Identities=18%  Similarity=0.181  Sum_probs=214.3

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCC----
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNK----  118 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~----  118 (339)
                      .++.+.+|+........... ....+|.+.|+||+|+|++     ++||+|+| .|+||++.+++  ....+..+.    
T Consensus        36 ~~~~~~~~~~~~~~~~~~~l-~~~~~H~~~V~~l~fs~dg-----~~lasg~d~~i~iW~~~~~~--~~~~~~~~~~~~~  107 (388)
T d1erja_          36 TNDYYILYNPALPREIDVEL-HKSLDHTSVVCCVKFSNDG-----EYLATGCNKTTQVYRVSDGS--LVARLSDDSAANK  107 (388)
T ss_dssp             CSSCEEEECTTSCCCEEEEE-EEEEECSSCCCEEEECTTS-----SEEEEECBSCEEEEETTTCC--EEEEECC------
T ss_pred             CCCcEEEeCCCCCcceeeee-EeeCCCCCcEEEEEECCCC-----CEEEEEeCCeEEEEEecccc--eEeeecccccccc
Confidence            47888896654433221111 1225799999999999999     89999987 99999998876  444443322    


Q ss_pred             ---------CccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCc
Q 040307          119 ---------TSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCS  188 (339)
Q Consensus       119 ---------~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~  188 (339)
                               ...+...|++++|+| ++++|++|+.||.|++||...++.+..+.+|...|.+++++ ++..+++++.++.
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             -----------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccccccccCCCCCEEEEEECC-CCCcceeccccccccccccccccccccccccccccccccccccccccccccccee
Confidence                     112336799999998 99999999999999999999999999999999999999999 7889999999999


Q ss_pred             EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE-------EecCCCCeeEE
Q 040307          189 VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV-------LSKHEGSVNGI  261 (339)
Q Consensus       189 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~-------~~~~~~~v~~~  261 (339)
                      +++||.++........    +.....++.++|.++.+|++++.|+. |++||.+. ......       ..+|...|.++
T Consensus       187 i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~-i~i~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l  260 (388)
T d1erja_         187 VRIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRA-VRVWDSET-GFLVERLDSENESGTGHKDSVYSV  260 (388)
T ss_dssp             EEEEETTTTEEEEEEE----CSSCEEEEEECSTTCCEEEEEETTSC-EEEEETTT-CCEEEEEC------CCCSSCEEEE
T ss_pred             eeeeeccccccccccc----cccccccccccCCCCCeEEEEcCCCe-EEEeeccc-CccceeeccccccccCCCCCEEEE
Confidence            9999999876444333    23566778888878999999999999 99999987 333333       34688899999


Q ss_pred             EeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          262 SWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       262 ~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|+|++ .+|++++.||.|++||+...........+...........|...|.+++|+|++++|++++.||.|++|++
T Consensus       261 ~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~  337 (388)
T d1erja_         261 VFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  337 (388)
T ss_dssp             EECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EECCCC-CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            999999 69999999999999999876621110011111112244568889999999999999999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-37  Score=260.26  Aligned_cols=242  Identities=15%  Similarity=0.207  Sum_probs=203.9

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT  147 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  147 (339)
                      ..++|+|++|+|++     ++||+|+ + .|+||++++++......+.+|.     .+|++++|+| ++++|++|+.|++
T Consensus         6 ~~~pIt~~~~s~dg-----~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~-----~~V~~l~fsp-~~~~l~s~s~D~~   74 (371)
T d1k8kc_           6 LVEPISCHAWNKDR-----TQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-----GQVTGVDWAP-DSNRIVTCGTDRN   74 (371)
T ss_dssp             CSSCCCEEEECTTS-----SEEEEECSSSEEEEEEEETTEEEEEEEEECCS-----SCEEEEEEET-TTTEEEEEETTSC
T ss_pred             CCCCeEEEEECCCC-----CEEEEEeCCCEEEEEECCCCCEEEEEEecCCC-----CCEEEEEECC-CCCEEEEEECCCe
Confidence            45789999999999     8999887 4 8999999988777888899998     9999999998 9999999999999


Q ss_pred             EEEEECCCCee--eeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCCCCCCCeEEEEEecCCC
Q 040307          148 CVIWDIDREIL--ETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       148 v~i~d~~~~~~--~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~  223 (339)
                      |++||++++..  ...+..|...|++++|+ +++.|++++.|+.+++|++......... .....+...|.+++|+| ++
T Consensus        75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~  153 (371)
T d1k8kc_          75 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NS  153 (371)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TS
T ss_pred             EEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cc
Confidence            99999987653  34456788899999999 7899999999999999998876643322 22334678999999998 89


Q ss_pred             CeEEEEeeCCCeEEEEecCCCC-----------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          224 RFMATVGMDSNKVVVLDIRFPT-----------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       224 ~~l~~~~~d~~~i~i~d~~~~~-----------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      ++|++|+.|+. +++||.....                 ..+.....|...|.+++|+|++ .+|++++.|+.|++||+.
T Consensus       154 ~~l~s~s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         154 VLLAAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SEEEEEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGG
T ss_pred             cceeccccCcE-EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeee
Confidence            99999999999 9999986421                 2345667788999999999999 599999999999999999


Q ss_pred             CCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          287 GPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ...            .......|..+|.+++|+|+++ +++++.|+.+++|.
T Consensus       232 ~~~------------~~~~~~~~~~~v~s~~fs~d~~-~la~g~d~~~~~~~  270 (371)
T d1k8kc_         232 KKM------------AVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFT  270 (371)
T ss_dssp             GTT------------EEEEEECSSCCEEEEEEEETTE-EEEEETTSSCEEEE
T ss_pred             ccc------------ceeeeecccccceeeeecCCCC-EEEEEcCCceEEEE
Confidence            877            2335567888999999999986 66777788877764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=252.53  Aligned_cols=240  Identities=15%  Similarity=0.249  Sum_probs=206.7

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|..+|.+++|+|+   +++|++|+    .|+.|++|++.........  .+ ..|...+.++.|+|++     .++++
T Consensus        94 ~~h~~~I~~v~~s~d---g~~l~s~~----~dg~i~iwd~~~~~~~~~~--~~-~~~~~~v~~~~~~~~~-----~~l~s  158 (337)
T d1gxra_          94 LNRDNYIRSCKLLPD---GCTLIVGG----EASTLSIWDLAAPTPRIKA--EL-TSSAPACYALAISPDS-----KVCFS  158 (337)
T ss_dssp             SCTTSBEEEEEECTT---SSEEEEEE----SSSEEEEEECCCC--EEEE--EE-ECSSSCEEEEEECTTS-----SEEEE
T ss_pred             cCCCCcEEEEEEcCC---CCEEEEee----ccccccccccccccccccc--cc-cccccccccccccccc-----ccccc
Confidence            356789999999999   99999999    7999999988766555443  33 5788999999999999     78888


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD  171 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~  171 (339)
                      ++ + .|++|++.+++  .......|.     ..|.+++|++ ++..+++++.|+.|++||+++++.+..+ .|...|.+
T Consensus       159 ~~~d~~i~~~~~~~~~--~~~~~~~~~-----~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~  229 (337)
T d1gxra_         159 CCSDGNIAVWDLHNQT--LVRQFQGHT-----DGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFS  229 (337)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEE
T ss_pred             cccccccccccccccc--ccccccccc-----cccccccccc-cccccccccccccccccccccceeeccc-ccccceEE
Confidence            76 4 99999999886  666777777     8999999998 8999999999999999999999988777 48889999


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      ++|+ ++++|++++.|+.+++||++..+....    ..|...|.+++|+| ++++|++++.|+. |++||+.. ++++..
T Consensus       230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~i~~v~~s~-~g~~l~s~s~Dg~-i~iwd~~~-~~~~~~  302 (337)
T d1gxra_         230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL----HLHESCVLSLKFAY-CGKWFVSTGKDNL-LNAWRTPY-GASIFQ  302 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEEE----CCCSSCEEEEEECT-TSSEEEEEETTSE-EEEEETTT-CCEEEE
T ss_pred             EEEcccccccceeccccccccccccccccccc----cccccccceEEECC-CCCEEEEEeCCCe-EEEEECCC-CCEEEE
Confidence            9999 789999999999999999998774322    23678999999998 8999999999998 99999987 555555


Q ss_pred             EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307          251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV  286 (339)
Q Consensus       251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~  286 (339)
                      + .|...|.+++|+|++ ++|++|+.||.|+|||+-
T Consensus       303 ~-~~~~~v~~~~~s~d~-~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         303 S-KESSSVLSCDISVDD-KYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             E-ECSSCEEEEEECTTS-CEEEEEETTSCEEEEEEE
T ss_pred             c-cCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEEE
Confidence            4 478899999999999 699999999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-33  Score=232.16  Aligned_cols=241  Identities=18%  Similarity=0.232  Sum_probs=215.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      .+|.++|++|+|+|++     ++||+|+ | +|+|||+++++  ...++.+|.     ..|.+++|+| ++.+++++..+
T Consensus        14 ~GH~~~I~~l~~sp~~-----~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~h~-----~~V~~~~~~~-~~~~~~~~~~~   80 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVF-----SVMVSASEDATIKVWDYETGD--FERTLKGHT-----DSVQDISFDH-SGKLLASCSAD   80 (317)
T ss_dssp             ECCSSCEEEEEECSSS-----SEEEEEESSSCEEEEETTTCC--CCEEECCCS-----SCEEEEEECT-TSSEEEEEETT
T ss_pred             cCCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCC--EEEEEeCCC-----CcEEEEeeec-ccccccccccc
Confidence            6899999999999999     8999987 5 99999999887  778888888     8999999998 99999999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      +.+.+|+....+....+..|...+.++.|+ +++.+++++.|+.+++||+++++....+ ..  +...+.+++|+| ++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~  156 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TG--HREWVRMVRPNQ-DGT  156 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-EC--CSSCEEEEEECT-TSS
T ss_pred             cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE-cc--CCCcceeeeccc-CCC
Confidence            999999999888888888899999999999 7899999999999999999988754443 33  567899999998 899


Q ss_pred             eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCC-------------------CeEEEEeCCCcEEEEEe
Q 040307          225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG-------------------RRLCSVADDSRALIWEV  285 (339)
Q Consensus       225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------------~~l~~~~~dg~v~iwd~  285 (339)
                      +|++++.|+. |++|+.+. ...+..+..|...+..++|+|++.                   .++++++.|+.|++||+
T Consensus       157 ~l~~~~~d~~-v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  234 (317)
T d1vyhc1         157 LIASCSNDQT-VRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  234 (317)
T ss_dssp             EEEEEETTSC-EEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             EEEEEeCCCe-EEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEEC
Confidence            9999999999 99999987 677888999999999999998742                   36899999999999999


Q ss_pred             cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ....            .......|...|.+++|+|++++|++++.||.|++|++
T Consensus       235 ~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         235 STGM------------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             TTTE------------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             CCCc------------EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            8877            22355678999999999999999999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=241.63  Aligned_cols=289  Identities=11%  Similarity=0.008  Sum_probs=212.4

Q ss_pred             eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..|.+.|++|+|+|+   +++||+|+    .||+|+||+++........  ....+|..+|.+++|+|++.    .+|++
T Consensus         8 ~~h~d~I~~l~fsp~---~~~L~s~s----~Dg~v~iwd~~~~~~~~~~--~~~~~h~~~V~~v~f~~~~~----~~l~s   74 (342)
T d1yfqa_           8 QAPKDYISDIKIIPS---KSLLLITS----WDGSLTVYKFDIQAKNVDL--LQSLRYKHPLLCCNFIDNTD----LQIYV   74 (342)
T ss_dssp             SCCSSCEEEEEEEGG---GTEEEEEE----TTSEEEEEEEETTTTEEEE--EEEEECSSCEEEEEEEESSS----EEEEE
T ss_pred             CCCCCCEEEEEEeCC---CCEEEEEE----CCCeEEEEEccCCCcceEE--EEecCCCCCEEEEEEeCCCC----CEEEE
Confidence            457889999999999   99999999    7999999998876554443  22357999999999999763    67888


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee----ecc--
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL----VAH--  165 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~~~--  165 (339)
                      |+ | .|++|++....  .......+..    .......+.+ +...+++++.++.+++||++.+......    ..+  
T Consensus        75 g~~d~~v~~w~~~~~~--~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~  147 (342)
T d1yfqa_          75 GTVQGEILKVDLIGSP--SFQALTNNEA----NLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT  147 (342)
T ss_dssp             EETTSCEEEECSSSSS--SEEECBSCCC----CSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred             cccccceeeeeccccc--cccccccccc----cccccccccc-ccccccccccccccceeeccccccceeeecccccccc
Confidence            76 5 99999998876  3333333320    2333444444 7889999999999999998655422222    122  


Q ss_pred             CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307          166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP  244 (339)
Q Consensus       166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~  244 (339)
                      ......+.+. .++.+++++.|+.|++||++...................+..+.|.++..+++++.++. +.+|+....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~  226 (342)
T d1yfqa_         148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQ  226 (342)
T ss_dssp             SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTT
T ss_pred             cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCC
Confidence            2233445555 68899999999999999999877554444433455677788887778889999999998 999988653


Q ss_pred             CCce--------------EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc
Q 040307          245 TNPV--------------VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM  310 (339)
Q Consensus       245 ~~~~--------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (339)
                      ....              .....|...|++++|+|++ .+|++|+.||.|+|||+++.+             .+....+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~-------------~l~~~~~~  292 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK-------------KIKNFAKF  292 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE-------------EEEECCCC
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCc-------------EEEEecCC
Confidence            2111              1123456689999999999 599999999999999999877             44444333


Q ss_pred             ceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          311 AEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       311 ~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      ..+..++|+|++..+++++.|+.+++|
T Consensus       293 ~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         293 NEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             SSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             CCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            456667888888888888878766555

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-33  Score=234.31  Aligned_cols=275  Identities=14%  Similarity=0.181  Sum_probs=202.7

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|...|.+ +++++   +++||+|+    .||+|+||++..  ++...  .+ .+|.++|++++|+|++      +|+++
T Consensus        10 GH~~~vit-c~~~~---~~~l~tgs----~Dg~i~vWd~~~--~~~~~--~l-~~H~~~V~~l~~s~~~------~l~s~   70 (355)
T d1nexb2          10 GHMTSVIT-CLQFE---DNYVITGA----DDKMIRVYDSIN--KKFLL--QL-SGHDGGVWALKYAHGG------ILVSG   70 (355)
T ss_dssp             CCSSSCEE-EEEEE---TTEEEEEE----TTTEEEEEETTT--TEEEE--EE-ECCSSCEEEEEEETTT------EEEEE
T ss_pred             CcCCCcEE-EEEEC---CCEEEEEe----CCCeEEEEECCC--CcEEE--EE-ECCCCCEEEEEEcCCC------EEEEE
Confidence            47777643 24567   77999999    799999987654  33333  33 6899999999999865      56666


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee----------
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL----------  162 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~----------  162 (339)
                      + | .|++|+....+  .........   ....+....+.+ ++.++++++.|+.|++||+++.......          
T Consensus        71 s~D~~i~iw~~~~~~--~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d1nexb2          71 STDRTVRVWDIKKGC--CTHVFEGHN---STVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  144 (355)
T ss_dssp             ETTCCEEEEETTTTE--EEEEECCCS---SCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred             ecccccccccccccc--ccccccccc---cccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence            5 6 99999998876  333333222   114455666776 8899999999999999999875432211          


Q ss_pred             -------------eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307          163 -------------VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       163 -------------~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                                   ..|...+..... ++++++++..|+.|++||+++.+..... .  .+...+.++.|+| .+.+++++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~~  219 (355)
T d1nexb2         145 HTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYIL-S--GHTDRIYSTIYDH-ERKRCISA  219 (355)
T ss_dssp             SCTTTCTTEEEEEECCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEE-C--CCSSCEEEEEEET-TTTEEEEE
T ss_pred             eccccccceeeeeeecccccccccc-ccceeeeecccceeeeeecccccceeee-e--ccccccccccccc-cceeeecc
Confidence                         123333333322 4789999999999999999987744332 2  2567889999998 88999999


Q ss_pred             eeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc
Q 040307          230 GMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS  309 (339)
Q Consensus       230 ~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  309 (339)
                      +.|+. |++||.+. ..++..+.+|...|.+++|++   .+|++++.||.|++||++...              .....|
T Consensus       220 ~~d~~-i~i~d~~~-~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~  280 (355)
T d1nexb2         220 SMDTT-IRIWDLEN-GELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS--------------RKFSYH  280 (355)
T ss_dssp             ETTSC-EEEEETTT-CCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCC--------------EEEEEE
T ss_pred             cccce-EEeeeccc-ccccccccccccccccccccc---ceeeeeecccccccccccccc--------------eecccc
Confidence            99999 99999987 677889999999999999975   489999999999999998766              233345


Q ss_pred             cceeEEEE-ecCCCCceEEEecCCeEEEEeC
Q 040307          310 MAEINVVR-WSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       310 ~~~i~~~~-~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...+..+. +++++ .+++++.|+.|++|++
T Consensus       281 ~~~~~~~~~~~~~~-~~l~~g~d~~i~vwd~  310 (355)
T d1nexb2         281 HTNLSAITTFYVSD-NILVSGSENQFNIYNL  310 (355)
T ss_dssp             CTTCCCCCEEEECS-SEEEEEETTEEEEEET
T ss_pred             cCCceEEEEEcCCC-CEEEEEeCCEEEEEEC
Confidence            55566654 45555 5777778999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-33  Score=229.84  Aligned_cols=270  Identities=15%  Similarity=0.123  Sum_probs=205.2

Q ss_pred             ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      +.+.++. |..+|++++|+|       |++|+    .||.|++|+...          ....|...|.++.|+++.    
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-------l~sgs----~Dg~v~~Wd~~~----------~~~~h~~~V~~~~~~~~~----   58 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-------LISGS----YDGRIMEWSSSS----------MHQDHSNLIVSLDNSKAQ----   58 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-------TEEEE----TTSCEEETTTTE----------EECCCCSCEEEEECCSTT----
T ss_pred             ceeEEECCCCCceEEEEECc-------EEEEe----CCCeEEEEECCC----------CCCCCCCCEEEEEecCCC----
Confidence            4555555 889999999975       78999    799999965431          125789999999999876    


Q ss_pred             CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307           88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD  166 (339)
Q Consensus        88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  166 (339)
                       .++..+.| ++++|++...+      +   .     ..+..+.+++ ++..+++ +.++.+.+|+..+++.+..+. +.
T Consensus        59 -~~~s~s~D~~v~~w~~~~~~------~---~-----~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~  120 (287)
T d1pgua2          59 -EYSSISWDDTLKVNGITKHE------F---G-----SQPKVASANN-DGFTAVL-TNDDDLLILQSFTGDIIKSVR-LN  120 (287)
T ss_dssp             -CCEEEETTTEEEETTEEEEE------C---S-----SCEEEEEECS-SSEEEEE-ETTSEEEEEETTTCCEEEEEE-CS
T ss_pred             -eEEEEeeccccccccccccc------c---c-----cceeeeeecc-CCceEEE-eecccceeeeccceeeeeecc-cc
Confidence             55544556 99999976532      1   1     4567788886 6555554 567788999999988887775 34


Q ss_pred             CceeEEEecCCcEEEEEeCC-CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          167 REVYDISWGGFNVFASVSGD-CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       167 ~~v~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                      ..+.++.. +++.+++++.+ +.+++|++...+.......  .+...+.+++|+| ++.+|++++.++. |++||+....
T Consensus       121 ~~~~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~g~~dg~-i~i~d~~~~~  195 (287)
T d1pgua2         121 SPGSAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISISP-SETYIAAGDVMGK-ILLYDLQSRE  195 (287)
T ss_dssp             SCEEEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSS--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTTTE
T ss_pred             ceeeeeec-cCcceeeeccccceeeeeeccccceeeeeee--ccCCceeEEEecc-Ccccccccccccc-ccceeecccc
Confidence            45555444 45666666666 5799999976653333222  3567899999998 8999999999999 9999998744


Q ss_pred             CceEEEecCCCCeeEEEeccCC---------CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEE
Q 040307          246 NPVVVLSKHEGSVNGISWAPLY---------GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINV  315 (339)
Q Consensus       246 ~~~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~  315 (339)
                      .....+..|...|.+++|+|.+         ..+|++|+.|+.|+|||++...            ... ...+|...|++
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~------------~~~~~~~~h~~~V~~  263 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM------------KIIKALNAHKDGVNN  263 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT------------CCEEETTSSTTCEEE
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC------------eEEEEeCCCCCCeEE
Confidence            3334567899999999999854         2489999999999999997755            233 34479999999


Q ss_pred             EEecCCCCceEEEecCCeEEEEeC
Q 040307          316 VRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       316 ~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++|+|++ .+++++.|+.|++|+|
T Consensus       264 v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         264 LLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEECCCC-EEEEEECCCeEEEEEE
Confidence            9999987 5899999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-32  Score=226.67  Aligned_cols=252  Identities=22%  Similarity=0.325  Sum_probs=208.6

Q ss_pred             CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++.+..+. |..+|.+++|+|+   +.++++|+    .|+.+.+|+.............+ ..|...........+.  
T Consensus        86 ~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~----~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--  155 (340)
T d1tbga_          86 TTNKVHAIPLRSSWVMTCAYAPS---GNYVACGG----LDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDN--  155 (340)
T ss_dssp             TTEEEEEEECSCSCEEEEEECTT---SSEEEEEE----TTCCEEEEESSSSCSCCCEEEEE-CCCSSCEEEEEEEETT--
T ss_pred             cceeEEEEecccccEEeeEeecc---ceeeeeec----ccceeecccccccccccccceec-cccccccccccccccc--
Confidence            345555555 6789999999999   99999999    79999999877665544442233 4677777776666665  


Q ss_pred             CCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307           86 LNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA  164 (339)
Q Consensus        86 ~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  164 (339)
                         .+.....+ ....+......  .......+.     ..+....+.+ ...++++++.|+.|++||+++++.+..+.+
T Consensus       156 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~  224 (340)
T d1tbga_         156 ---QIVTSSGDTTCALWDIETGQ--QTTTFTGHT-----GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             ---EEEEEETTTEEEEEETTTTE--EEEEEECCS-----SCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECC
T ss_pred             ---cccccccccccccccccccc--ccccccccc-----eeEeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeC
Confidence               55555556 77777776654  444444444     7888999987 889999999999999999999999999999


Q ss_pred             cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      |...|++++|+ ++++|++++.|+.|++||++....... .....+...+.+++|+| ++++|++|+.|+. |++||+..
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~-i~iwd~~~  301 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSK-SGRLLLAGYDDFN-CNVWDALK  301 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECS-SSCEEEEEETTSC-EEEEETTT
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccc-cccccccCceEEEEECC-CCCEEEEEECCCE-EEEEECCC
Confidence            99999999999 789999999999999999998875444 33344667899999998 8999999999999 99999987


Q ss_pred             CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE  284 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd  284 (339)
                       .+++..+.+|...|++++|+|++ .+|++|+.||.|+|||
T Consensus       302 -~~~~~~~~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         302 -ADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -CCEEEEECCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             -CcEEEEEcCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence             67889999999999999999999 5999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-32  Score=225.23  Aligned_cols=280  Identities=18%  Similarity=0.193  Sum_probs=203.3

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|.++|.+ +++++   +++||+|+    .||.|+||++...  +...  .+ .+|...|.+++|+|       .+|+++
T Consensus        14 GH~~~V~s-~~~~~---g~~l~sgs----~Dg~i~vWd~~~~--~~~~--~~-~~h~~~V~~v~~~~-------~~l~s~   73 (342)
T d2ovrb2          14 GHDDHVIT-CLQFC---GNRIVSGS----DDNTLKVWSAVTG--KCLR--TL-VGHTGGVWSSQMRD-------NIIISG   73 (342)
T ss_dssp             CSTTSCEE-EEEEE---TTEEEEEE----TTSCEEEEETTTC--CEEE--EC-CCCSSCEEEEEEET-------TEEEEE
T ss_pred             CcCCceEE-EEEEC---CCEEEEEe----CCCeEEEEECCCC--CEEE--EE-eCCCCCEEEEEeCC-------Cccccc
Confidence            68888876 57888   88999999    7999999887543  3332  33 68999999999986       466666


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCC---------------------------cc------CCCCEEEEEEcCCCCCEE
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKT---------------------------SE------FSSAITSFDWAGFDTRRV  139 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~---------------------------~~------~~~~i~~~~~~~~~~~~l  139 (339)
                      + | .+++|+......  ......+..                           ..      .........+.+ ....+
T Consensus        74 s~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  150 (342)
T d2ovrb2          74 STDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRV  150 (342)
T ss_dssp             ETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCE
T ss_pred             eecccccccccccccc--eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc-cccee
Confidence            6 5 999999876531  111111000                           00      000001112222 55678


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      ++++.|+.|++||.+..+.+..+.+|...+..+.+ ++..+++++.|+.|++||++..+.... ..  .|...+.+++++
T Consensus       151 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~-~~--~~~~~v~~~~~~  226 (342)
T d2ovrb2         151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHT-LT--GHQSLTSGMELK  226 (342)
T ss_dssp             EEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEE-EC--CCCSCEEEEEEE
T ss_pred             eeecCCCeEEEeecccceeeEEEcCcccccccccC-CCCEEEEEeCCCeEEEeecccceeeeE-ec--ccccceeEEecC
Confidence            89999999999999999888888888877776666 488999999999999999998874433 22  366788888876


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG  296 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  296 (339)
                      +   ++|++++.|+. |++||+.. .+....+..   |...+.++.+++   .++++|+.||.|++||+++++       
T Consensus       227 ~---~~l~s~s~d~~-i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~-------  291 (342)
T d2ovrb2         227 D---NILVSGNADST-VKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGE-------  291 (342)
T ss_dssp             T---TEEEEEETTSC-EEEEETTT-CCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC-------
T ss_pred             C---CEEEEEcCCCE-EEEEeccc-ccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCC-------
Confidence            4   69999999999 99999987 455556654   445666666654   489999999999999999877       


Q ss_pred             CCCccccee---eecccceeEEEEecCCCCceEEEecCCe----EEEEeC
Q 040307          297 PSGDVEPEL---CYQSMAEINVVRWSPLELDWIAIAFVNK----LQLLKV  339 (339)
Q Consensus       297 ~~~~~~~~~---~~~~~~~i~~~~~~p~~~~l~~~~~d~~----v~~w~v  339 (339)
                         .+..+.   ..+|...|++++|+|++..+++++.||+    |++|++
T Consensus       292 ---~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         292 ---FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             ---EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             ---EEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence               111111   1257788999999999987777888875    899984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.7e-33  Score=228.07  Aligned_cols=238  Identities=11%  Similarity=0.133  Sum_probs=188.3

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                      ..+|.++|++|+|+|++     ++|++|+ | .|++||+++++  ....+. .|.     ..|++++|+| ++. +++++
T Consensus         8 ~~GH~~~V~~l~~s~dg-----~~l~s~s~Dg~v~vWd~~~~~--~~~~~~~~h~-----~~v~~v~~~~-~g~-~~~~~   73 (299)
T d1nr0a2           8 RYGHNKAITALSSSADG-----KTLFSADAEGHINSWDISTGI--SNRVFPDVHA-----TMITGIKTTS-KGD-LFTVS   73 (299)
T ss_dssp             ECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTCC--EEECSSCSCS-----SCEEEEEECT-TSC-EEEEE
T ss_pred             cCCCCCCcEEEEECCCC-----CEEEEEcCCCeEEEEECCCCc--EEEEEcCCCC-----CcEEEEEeec-cce-eeccc
Confidence            47999999999999999     8999987 5 99999999886  555553 565     8999999998 765 56667


Q ss_pred             CCCeEEEEECCCCee---eeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307          144 VDTTCVIWDIDREIL---ETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN  219 (339)
Q Consensus       144 ~d~~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  219 (339)
                      .|+.+++|+......   ......+...+.+++|+ ++.+++++ .++.+++|+.....   ...    ....+.+++|+
T Consensus        74 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~~---~~~----~~~~~~~~~~s  145 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKLT---EVP----ISYNSSCVALS  145 (299)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEEE---EEE----CSSCEEEEEEC
T ss_pred             ceeeEEEeccCCcccccccccccccccccccccccccccccccc-cccccccccccccc---ccc----ccccccccccc
Confidence            899999999865431   22234567789999999 56665555 56789999954321   211    23568899999


Q ss_pred             cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                      | ++++|++++.++. |++||++...........|...|.+++|+|++ .+|++++.|+.|++||+....          
T Consensus       146 ~-~~~~l~~g~~dg~-i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~----------  212 (299)
T d1nr0a2         146 N-DKQFVAVGGQDSK-VHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNF----------  212 (299)
T ss_dssp             T-TSCEEEEEETTSE-EEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTT----------
T ss_pred             c-ccccccccccccc-cccccccccccccccccccccccccccccccc-ccccccccccccccccccccc----------
Confidence            8 8999999999998 99999986332233456789999999999999 699999999999999998866          


Q ss_pred             ccc-ceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          300 DVE-PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       300 ~~~-~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ... ......|...|++++|+|+++++++++.|+.|++|++
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccccccccccccccceEEEcCCCEEEEEEC
Confidence            111 1234468889999999999999999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-32  Score=225.94  Aligned_cols=246  Identities=15%  Similarity=0.112  Sum_probs=187.6

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee---EeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR---LIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..+|++++|+|..+ +++||+|+    .||+|+||++............   ....|.++|.+++|++++     +.+++
T Consensus        63 ~~~v~~v~fsP~~~-g~~lasgs----~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~  132 (325)
T d1pgua1          63 SSVVTTVKFSPIKG-SQYLCSGD----ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-----RRLCV  132 (325)
T ss_dssp             TSCEEEEEECSSTT-CCEEEEEE----TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-----SEEEE
T ss_pred             CCCEEEEEEeeCCC-CCEEEEEe----CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-----Cccce
Confidence            46899999998522 78999999    7999999988654433222111   114688999999999999     66665


Q ss_pred             eC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccC
Q 040307           94 SG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHD  166 (339)
Q Consensus        94 ~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~  166 (339)
                      ++   + .+++|+.++++  .+..+.+|.     ..|++++|+|....++++++.|+.|++||+...+....+   ..|.
T Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~h~-----~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~  205 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN--SLGEVSGHS-----QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  205 (325)
T ss_dssp             EECCSSCSEEEEETTTCC--EEEECCSCS-----SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             eeccccceEEEEeecccc--cceeeeecc-----cccccccccccccceEEEeecccccccccccccccceecccccCCC
Confidence            43   3 89999998876  788888887     899999999844456788999999999999887755544   4567


Q ss_pred             CceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe---cCCCCeEEEEeeCCCeEEEEec
Q 040307          167 REVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN---KADPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       167 ~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~d~~~i~i~d~  241 (339)
                      ..|.+++|+|  +.+|++++.|+.|++||+++++....+..   |..++..+.|+   | ++++|++++.|+. |+|||+
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~---~~~~v~~~~~s~~~~-dg~~l~s~s~D~~-i~iwd~  280 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED---DQEPVQGGIFALSWL-DSQKFATVGADAT-IRVWDV  280 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB---TTBCCCSCEEEEEES-SSSEEEEEETTSE-EEEEET
T ss_pred             CccEEeeeccccceeccccccccceeeeeeccccccccccc---cccccccceeeeecc-CCCEEEEEeCCCe-EEEEEC
Confidence            7899999993  68999999999999999998875444332   34444444433   3 7899999999998 999999


Q ss_pred             CCCCCceEEEecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          242 RFPTNPVVVLSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      +. ++++..+..|...  +..+++.+.++.+|++++.||.|++||+
T Consensus       281 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         281 TT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CC-CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            87 6677777766554  3344444433248999999999999995

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-31  Score=225.56  Aligned_cols=295  Identities=12%  Similarity=0.104  Sum_probs=204.5

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE-eecCCCCceEEEE------cCCCCCCC
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL-IFDHPYTPTNIAF------FPSEETLN   87 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~------~~~~~~~~   87 (339)
                      .|...|++++++++     +|++|+    .|+.|+||+.............. ...|...+..+..      ++...   
T Consensus        12 ~H~~~I~~v~~~~~-----~l~S~S----~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   79 (393)
T d1sq9a_          12 AHDADIFSVSACNS-----FTVSCS----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL---   79 (393)
T ss_dssp             CSSSCEEEEEECSS-----EEEEEE----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE---
T ss_pred             cccCccEEEEEeCC-----EEEEEE----CCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC---
Confidence            47899999998655     899999    79999999876544332221111 2345544433332      22111   


Q ss_pred             CCeEEEeC-C-cEEEEeecCCccee---EEEeecCCCccCCCCEEEEEEcCC----CCCEEEEEeCCCeEEEEECCCCe-
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTEL---KSLLNSNKTSEFSSAITSFDWAGF----DTRRVATCSVDTTCVIWDIDREI-  157 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~-  157 (339)
                       .++++++ | .|++|++.......   ...........+...+..++|.+.    .+.++++++.||.+++|++.... 
T Consensus        80 -~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          80 -CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             -EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             -cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence             4666766 5 99999987654111   111111111222356778888762    24689999999999999985321 


Q ss_pred             -----------------eeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEe---CCCCCCCeEEEE
Q 040307          158 -----------------LETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYE---NPVQDCPLLRLE  217 (339)
Q Consensus       158 -----------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~  217 (339)
                                       .......+...+.+++|++..+|++|+.|+.|++||+++.+.......   ...|..+|.+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                             111112345668899999666999999999999999998875443322   124778999999


Q ss_pred             EecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEE-------------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307          218 WNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVL-------------SKHEGSVNGISWAPLYGRRLCSVADDSRALI  282 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~-------------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i  282 (339)
                      |+| ++++|++|+.|+.  .|++||++. ++.+..+             .+|...|++++|+|++ ++|++++.|++|+|
T Consensus       239 ~sp-dg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         239 FSP-QGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRF  315 (393)
T ss_dssp             ECS-STTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEE
T ss_pred             ccc-ccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEE
Confidence            999 9999999999974  389999987 4445544             4799999999999999 69999999999999


Q ss_pred             EEecCCCCCCCCCCCCCcccce-eeecc---------------------cceeEEEEecCCC----------CceEEEec
Q 040307          283 WEVVGPGYRSGNGGPSGDVEPE-LCYQS---------------------MAEINVVRWSPLE----------LDWIAIAF  330 (339)
Q Consensus       283 wd~~~~~~~~~~~~~~~~~~~~-~~~~~---------------------~~~i~~~~~~p~~----------~~l~~~~~  330 (339)
                      ||+++++             ++ .+.+|                     ...+.++.|.+.+          +.+++++.
T Consensus       316 Wd~~~g~-------------~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T d1sq9a_         316 WDVKTKE-------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL  382 (393)
T ss_dssp             EETTTTE-------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET
T ss_pred             EECCCCC-------------EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEc
Confidence            9998876             11 12222                     2346778887654          23778999


Q ss_pred             CCeEEEEe
Q 040307          331 VNKLQLLK  338 (339)
Q Consensus       331 d~~v~~w~  338 (339)
                      |+.||+|+
T Consensus       383 d~~ir~~~  390 (393)
T d1sq9a_         383 DRSIRWFR  390 (393)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEe
Confidence            99999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-31  Score=213.40  Aligned_cols=276  Identities=18%  Similarity=0.294  Sum_probs=205.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      ++...|+|++  ++   +++||+|+    .||.|+||+++.  .+...  .+ .+|.+.|.+++|  ++     ++|++|
T Consensus        13 ~~~~~V~c~~--~d---~~~l~sgs----~Dg~i~vWd~~~--~~~~~--~l-~~H~~~V~~v~~--~~-----~~l~s~   71 (293)
T d1p22a2          13 ETSKGVYCLQ--YD---DQKIVSGL----RDNTIKIWDKNT--LECKR--IL-TGHTGSVLCLQY--DE-----RVIITG   71 (293)
T ss_dssp             SSCCCEEEEE--CC---SSEEEEEE----SSSCEEEEESSS--CCEEE--EE-CCCSSCEEEEEC--CS-----SEEEEE
T ss_pred             CCCCCEEEEE--Ec---CCEEEEEe----CCCeEEEEECCC--CcEEE--EE-ecCCCCEeeeec--cc-----ceeecc
Confidence            3567898865  47   78999999    799999988754  33333  33 689999999987  45     788888


Q ss_pred             C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccCCce
Q 040307           95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHDREV  169 (339)
Q Consensus        95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~v  169 (339)
                      + | .|++|++..+.  .......+.     ..  ...+.+ ....++++..++.+.+|+.....   ....+..|...+
T Consensus        72 s~D~~i~~~~~~~~~--~~~~~~~~~-----~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  141 (293)
T d1p22a2          72 SSDSTVRVWDVNTGE--MLNTLIHHC-----EA--VLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  141 (293)
T ss_dssp             ETTSCEEEEESSSCC--EEEEECCCC-----SC--EEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             ccccccccccccccc--ccccccccc-----cc--cccccc-cccceeecccccceeEeecccccccccccccccccccc
Confidence            7 5 99999999886  444443332     22  233343 56789999999999999997765   334456778888


Q ss_pred             eEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307          170 YDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV  249 (339)
Q Consensus       170 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~  249 (339)
                      ..+.+. ...+++++.|+.|++||+++.+....+. .  +...+..+.++   +.++++++.|+. |++||++. ...+.
T Consensus       142 ~~~~~~-~~~~~~~s~d~~i~~~d~~~~~~~~~~~-~--~~~~v~~~~~~---~~~l~~~~~dg~-i~i~d~~~-~~~~~  212 (293)
T d1p22a2         142 NVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLN-G--HKRGIACLQYR---DRLVVSGSSDNT-IRLWDIEC-GACLR  212 (293)
T ss_dssp             EEEEEE-TTEEEEEETTSEEEEEETTTCCEEEEEE-C--CSSCEEEEEEE---TTEEEEEETTSC-EEEEETTT-CCEEE
T ss_pred             ccceec-ccccccccCCCceeeecCCCCcEEEEEc-c--cccccccccCC---CCeEEEecCCCE-EEEEeccc-ceeee
Confidence            887776 5678899999999999999887544433 2  45677777775   468999999999 99999987 66788


Q ss_pred             EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307          250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                      ...+|...+..+  ++++ .+|++++.||.|++||+..... +.  ............+|.+.|++++|++  .+|++++
T Consensus       213 ~~~~~~~~v~~~--~~~~-~~l~sg~~dg~i~iwd~~~~~~-~~--~~~~~~~~~~~~~H~~~V~~v~~d~--~~l~s~s  284 (293)
T d1p22a2         213 VLEGHEELVRCI--RFDN-KRIVSGAYDGKIKVWDLVAALD-PR--APAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSS  284 (293)
T ss_dssp             EECCCSSCEEEE--ECCS-SEEEEEETTSCEEEEEHHHHTS-TT--SCTTTTEEEEECCCSSCCCCEEECS--SCEEECC
T ss_pred             eecccceeeeec--cccc-eEEEEEcCCCEEEEEECCCCcc-cc--ccCCceeeEEecCCCCCEEEEEEcC--CEEEEEe
Confidence            888888887654  4566 5999999999999999976541 10  0000111224557999999999964  5799999


Q ss_pred             cCCeEEEEe
Q 040307          330 FVNKLQLLK  338 (339)
Q Consensus       330 ~d~~v~~w~  338 (339)
                      .|++|++|+
T Consensus       285 ~Dg~i~iWD  293 (293)
T d1p22a2         285 HDDTILIWD  293 (293)
T ss_dssp             SSSEEEEEC
T ss_pred             cCCEEEEeC
Confidence            999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-31  Score=219.64  Aligned_cols=282  Identities=15%  Similarity=0.158  Sum_probs=208.6

Q ss_pred             CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      +++.+.++. |..+|.+++|+|+   + +|++|+    .|+.|++|++.........  . ...+........+++++  
T Consensus        42 ~~~~~~~l~~H~~~V~~l~~s~~---~-~l~s~s----~D~~i~iw~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~--  108 (355)
T d1nexb2          42 NKKFLLQLSGHDGGVWALKYAHG---G-ILVSGS----TDRTVRVWDIKKGCCTHVF--E-GHNSTVRCLDIVEYKNI--  108 (355)
T ss_dssp             TTEEEEEEECCSSCEEEEEEETT---T-EEEEEE----TTCCEEEEETTTTEEEEEE--C-CCSSCEEEEEEEEETTE--
T ss_pred             CCcEEEEEECCCCCEEEEEEcCC---C-EEEEEe----ccccccccccccccccccc--c-ccccccccccccccccc--
Confidence            456666666 7899999999987   5 688888    7999999887654332221  1 12333445667788888  


Q ss_pred             CCCCeEEEeC-C-cEEEEeecCCccee---------------------EEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           86 LNPDIVATSG-D-SLRLWEIHDDRTEL---------------------KSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        86 ~~~~~la~~~-~-~i~iw~~~~~~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                         .++++++ + .|++|++.+.....                     ......|.     ..+..  +.+ ++++++++
T Consensus       109 ---~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~--~~~-~~~~~~~~  177 (355)
T d1nexb2         109 ---KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM-----ASVRT--VSG-HGNIVVSG  177 (355)
T ss_dssp             ---EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS-----SCEEE--EEE-ETTEEEEE
T ss_pred             ---ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc-----ccccc--ccc-ccceeeee
Confidence               7888776 4 99999998754110                     11111111     33333  333 67899999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307          143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA  221 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~  221 (339)
                      ..|+.|++||+++++.+....++...+.++.++ ++..+++++.|+.|++||++++.....+ .  .|...|.+++|++ 
T Consensus       178 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~--~h~~~v~~~~~~~-  253 (355)
T d1nexb2         178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-Q--GHTALVGLLRLSD-  253 (355)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE-C--CCSSCCCEEEECS-
T ss_pred             cccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc-c--ccccccccccccc-
Confidence            999999999999999888888888999999999 7899999999999999999988754433 3  3778899999864 


Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEe-ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISW-APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD  300 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  300 (339)
                        ++|++++.|+. |++||++..   ...+..|...+.++.+ ++++ ++|++| .|+.|+|||+++++           
T Consensus       254 --~~l~~~~~dg~-i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~~tg~-----------  314 (355)
T d1nexb2         254 --KFLVSAAADGS-IRGWDANDY---SRKFSYHHTNLSAITTFYVSD-NILVSG-SENQFNIYNLRSGK-----------  314 (355)
T ss_dssp             --SEEEEECTTSE-EEEEETTTC---CEEEEEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEETTTCC-----------
T ss_pred             --ceeeeeecccc-ccccccccc---ceecccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEECCCCC-----------
Confidence              79999999998 999999863   3456667777777654 5555 566665 58999999999877           


Q ss_pred             ccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          301 VEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       301 ~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                        ++  ...+|...|.+++|+|+. .+++++.||.+.||.
T Consensus       315 --~~~~~~~~~~~~V~~v~~~~~~-~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         315 --LVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             --BCCSCTTTTCSEEEEEEEETTE-EEEEEESSSCEEEEE
T ss_pred             --EEEEEecCCCCCEEEEEEcCCe-EEEEEECCCcEEEEE
Confidence              22  345788999999999974 466778999877664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.7e-31  Score=221.82  Aligned_cols=269  Identities=9%  Similarity=0.005  Sum_probs=202.3

Q ss_pred             eeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307           20 ISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-   96 (339)
Q Consensus        20 v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-   96 (339)
                      .++-.||| |   |+++|+++     +|.|++|+.  .++....     ..|...|.+++|+||+     +.|++++ + 
T Consensus         5 ~~~~~fSP~d---G~~~a~~~-----~g~v~v~d~--~~~~~~~-----~~~~~~v~~~~~spDg-----~~l~~~~~~~   64 (360)
T d1k32a3           5 KFAEDFSPLD---GDLIAFVS-----RGQAFIQDV--SGTYVLK-----VPEPLRIRYVRRGGDT-----KVAFIHGTRE   64 (360)
T ss_dssp             GGEEEEEECG---GGCEEEEE-----TTEEEEECT--TSSBEEE-----CSCCSCEEEEEECSSS-----EEEEEEEETT
T ss_pred             hhcccccCCC---CCEEEEEE-----CCeEEEEEC--CCCcEEE-----ccCCCCEEEEEECCCC-----CEEEEEEcCC
Confidence            34568999 8   99999998     789999654  4444443     5799999999999999     7776654 3 


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                        .|++|++++++   ...+..|.     ..|.+++|+| ++++|++++.++.+++|++.+++....+..|...+.+++|
T Consensus        65 g~~v~v~d~~~~~---~~~~~~~~-----~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (360)
T d1k32a3          65 GDFLGIYDYRTGK---AEKFEENL-----GNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI  135 (360)
T ss_dssp             EEEEEEEETTTCC---EEECCCCC-----CSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred             CCEEEEEECCCCc---EEEeeCCC-----ceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhh
Confidence              79999998875   34555666     8999999998 9999999999999999999999988888889999999999


Q ss_pred             c-CCcEEEEEe----------CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          175 G-GFNVFASVS----------GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       175 ~-~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      + ++++|+.+.          .++.+++||+.+++.....    .+...+..++|+| +++.|++++.++. +.+||...
T Consensus       136 spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~----~~~~~~~~~~~sp-dg~~l~~~s~~~~-~~~~d~~~  209 (360)
T d1k32a3         136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT----TENSHDYAPAFDA-DSKNLYYLSYRSL-DPSPDRVV  209 (360)
T ss_dssp             CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS----CSSSBEEEEEECT-TSCEEEEEESCCC-CCEECSSS
T ss_pred             ccceeeeeeeccccccceeeccccceeeeccccCceeeec----ccccccccccccC-CCCEEEEEeCCCc-eEcccccc
Confidence            9 788888654          3456899999887643322    2446788999998 8999999999998 99998653


Q ss_pred             CCC------ceEEEecC------------------------------------CCCeeEEEeccC----------CC--C
Q 040307          244 PTN------PVVVLSKH------------------------------------EGSVNGISWAPL----------YG--R  269 (339)
Q Consensus       244 ~~~------~~~~~~~~------------------------------------~~~v~~~~~~p~----------~~--~  269 (339)
                      ...      ....+..|                                    .+....+...++          ++  .
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (360)
T d1k32a3         210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  289 (360)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCee
Confidence            210      00111111                                    111222222222          11  1


Q ss_pred             eEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          270 RLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       270 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ++++++.++.+++||+...+             ..   .+.+.|.+++|+|||++|++++.||.|++|++
T Consensus       290 ~~~~~~~~~~i~~~d~~~~~-------------~~---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         290 YYQGAPEKGVLLKYDVKTRK-------------VT---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             HHHCCCCCEEEEEEETTTCC-------------EE---EEEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred             EEEecCCCCEEEEEECCCCe-------------EE---EecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence            34556678899999987765             22   34457999999999999999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-28  Score=204.68  Aligned_cols=260  Identities=11%  Similarity=0.018  Sum_probs=186.4

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS  143 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  143 (339)
                      ..+|.+.|++|+|+|++     ++||+|+ | +|+|||++.... .......+|.     .+|++++|+|.++.+|++|+
T Consensus         7 ~~~h~d~I~~l~fsp~~-----~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~-----~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSK-----SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK-----HPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCCSSCEEEEEEEGGG-----TEEEEEETTSEEEEEEEETTTTEEEEEEEEECS-----SCEEEEEEEESSSEEEEEEE
T ss_pred             CCCCCCCEEEEEEeCCC-----CEEEEEECCCeEEEEEccCCCcceEEEEecCCC-----CCEEEEEEeCCCCCEEEEcc
Confidence            46899999999999999     8999987 5 999999987652 1223333566     89999999985567899999


Q ss_pred             CCCeEEEEECCCCeeeeeeeccCCcee-EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC---CCCCCCeEEEEE
Q 040307          144 VDTTCVIWDIDREILETQLVAHDREVY-DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN---PVQDCPLLRLEW  218 (339)
Q Consensus       144 ~d~~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~  218 (339)
                      .||.|++|++...........+..... ...+. +...+++++.++.+++||++...........   ...........+
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            999999999988776666554444433 33333 6889999999999999999865533332211   112233445566


Q ss_pred             ecCCCCeEEEEeeCCCeEEEEecCCCCCce--EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307          219 NKADPRFMATVGMDSNKVVVLDIRFPTNPV--VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG  296 (339)
Q Consensus       219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  296 (339)
                      .+ .+..+++++.++. |++||++......  .....+...+....+.|.....+++++.||.+.+|++..... .....
T Consensus       157 ~~-~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~-~~~~~  233 (342)
T d1yfqa_         157 DT-NSSRLIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-DYNSS  233 (342)
T ss_dssp             EE-CSSEEEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-STTCT
T ss_pred             ec-cCCceeeecCCCc-EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc-eeecc
Confidence            66 7889999999998 9999998644322  233344456667776665547999999999999999887651 11000


Q ss_pred             CCCccc----ceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          297 PSGDVE----PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       297 ~~~~~~----~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ......    ......|...|++++|+|++++|++++.||.|++|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence            000000    0112346678999999999999999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-27  Score=196.50  Aligned_cols=249  Identities=14%  Similarity=0.166  Sum_probs=186.6

Q ss_pred             CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccccee---------------------
Q 040307            7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN---------------------   64 (339)
Q Consensus         7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~---------------------   64 (339)
                      +++.+.++. |..+|.+++|+|+     +|++|+    .|+.+++|+............                     
T Consensus        46 ~~~~~~~~~~h~~~V~~v~~~~~-----~l~s~s----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  116 (342)
T d2ovrb2          46 TGKCLRTLVGHTGGVWSSQMRDN-----IIISGS----TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD  116 (342)
T ss_dssp             TCCEEEECCCCSSCEEEEEEETT-----EEEEEE----TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             CCCEEEEEeCCCCCEEEEEeCCC-----ccccce----ecccccccccccccceecccccceeEeeeecccccccccccc
Confidence            345555554 6789999999877     899999    799999988664321111000                     


Q ss_pred             -------------eEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEE
Q 040307           65 -------------RLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSF  129 (339)
Q Consensus        65 -------------~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  129 (339)
                                   ......... ....+.+..     ..++.++ + .+++|+....+  ....+.+|.     ..+..+
T Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~-----~~~~~~  183 (342)
T d2ovrb2         117 ATLRVWDIETGQCLHVLMGHVA-AVRCVQYDG-----RRVVSGAYDFMVKVWDPETET--CLHTLQGHT-----NRVYSL  183 (342)
T ss_dssp             SEEEEEESSSCCEEEEEECCSS-CEEEEEECS-----SCEEEEETTSCEEEEEGGGTE--EEEEECCCS-----SCEEEE
T ss_pred             eeEEEeecccccceeeeecccc-cceeecccc-----ceeeeecCCCeEEEeecccce--eeEEEcCcc-----cccccc
Confidence                         000001111 112222333     3444444 5 99999998876  777787776     566555


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC
Q 040307          130 DWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ  209 (339)
Q Consensus       130 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  209 (339)
                      .+   ++.+|++++.||.|++||++.++.+..+..|...+.++.++ +++|++++.|+.|++||+...+....+.....|
T Consensus       184 ~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  259 (342)
T d2ovrb2         184 QF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH  259 (342)
T ss_dssp             EE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred             cC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC-CCEEEEEcCCCEEEEEeccccccccccccccee
Confidence            54   67899999999999999999999999999999999999887 579999999999999999998866665555556


Q ss_pred             CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe-----cCCCCeeEEEeccCCCCeEEEEeCCCc----E
Q 040307          210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS-----KHEGSVNGISWAPLYGRRLCSVADDSR----A  280 (339)
Q Consensus       210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~~~dg~----v  280 (339)
                      ...+.++.++   ++++++++.|+. |++||+++ ++.+..+.     +|...|++++|+|++ .+|++|+.||+    |
T Consensus       260 ~~~~~~~~~~---~~~~~s~s~Dg~-i~iwd~~t-g~~i~~~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l  333 (342)
T d2ovrb2         260 QSAVTCLQFN---KNFVITSSDDGT-VKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKL  333 (342)
T ss_dssp             SSCEEEEEEC---SSEEEEEETTSE-EEEEETTT-CCEEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEE
T ss_pred             eeceeecccC---CCeeEEEcCCCE-EEEEECCC-CCEEEEEecccCCCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEE
Confidence            6777777775   479999999998 99999987 56666664     467789999999998 69999999985    9


Q ss_pred             EEEEecC
Q 040307          281 LIWEVVG  287 (339)
Q Consensus       281 ~iwd~~~  287 (339)
                      ++||++.
T Consensus       334 ~~~Df~~  340 (342)
T d2ovrb2         334 LVLDFDV  340 (342)
T ss_dssp             EEEECCC
T ss_pred             EEEeCCC
Confidence            9999875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-28  Score=209.18  Aligned_cols=261  Identities=10%  Similarity=0.113  Sum_probs=173.1

Q ss_pred             eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc----eeEEEeecCCCccC-CCCEEEEEEcCCCCCEE
Q 040307           67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT----ELKSLLNSNKTSEF-SSAITSFDWAGFDTRRV  139 (339)
Q Consensus        67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~----~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l  139 (339)
                      ..+|.+.|.++++++       +++++++ | +|+|||....+.    ........|....+ ......+..++.+..++
T Consensus        10 ~~~H~~~I~~v~~~~-------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_          10 GKAHDADIFSVSACN-------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             SSCSSSCEEEEEECS-------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             CCcccCccEEEEEeC-------CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            368999999999864       5677776 5 999999776531    11222222321000 01122223332234578


Q ss_pred             EEEeCCCeEEEEECCCCeeeeee----------eccCCceeEEEec-C-----CcEEEEEeCCCcEEEEECCCCcc----
Q 040307          140 ATCSVDTTCVIWDIDREILETQL----------VAHDREVYDISWG-G-----FNVFASVSGDCSVRVFDLRDKER----  199 (339)
Q Consensus       140 ~~~~~d~~v~i~d~~~~~~~~~~----------~~~~~~v~~~~~~-~-----~~~l~~~~~d~~i~i~d~~~~~~----  199 (339)
                      ++++.||.|++|++........+          ..+...+..++|. .     +.++++++.|+.+++||+.....    
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            89999999999997544321111          1244567777776 2     57899999999999999854321    


Q ss_pred             -----------eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE------EEecCCCCeeEEE
Q 040307          200 -----------STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV------VLSKHEGSVNGIS  262 (339)
Q Consensus       200 -----------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~------~~~~~~~~v~~~~  262 (339)
                                 .........+...+.+++|+| ++ +|++|+.|+. |++||++. .+++.      .+.+|..+|++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~-i~iwd~~~-~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGT-VQISELST-LRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSE-EEEEETTT-TEEEEEEECCC---CCCCCEEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCc-EEEEeecc-cccccccccccccccccceEEEcc
Confidence                       011112223445688999998 55 8899999998 99999987 44443      3457889999999


Q ss_pred             eccCCCCeEEEEeCCCc---EEEEEecCCCCCC-CCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          263 WAPLYGRRLCSVADDSR---ALIWEVVGPGYRS-GNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       263 ~~p~~~~~l~~~~~dg~---v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      |+|++ ++|++|+.|++   |++||+..+.... ...............+|...|++++|+|++++|++++.|++|++|+
T Consensus       239 ~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         239 FSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             ECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccc-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            99999 69999998874   8999998765100 0000000001123347999999999999999999999999999998


Q ss_pred             C
Q 040307          339 V  339 (339)
Q Consensus       339 v  339 (339)
                      +
T Consensus       318 ~  318 (393)
T d1sq9a_         318 V  318 (393)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-27  Score=193.43  Aligned_cols=230  Identities=16%  Similarity=0.190  Sum_probs=182.0

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .|...|.+++|+++   .. +++++    .|+++++|+...            ......+.++.+++++     .+++++
T Consensus        44 ~h~~~V~~~~~~~~---~~-~~s~s----~D~~v~~w~~~~------------~~~~~~~~~~~~~~~~-----~~~~~~   98 (287)
T d1pgua2          44 DHSNLIVSLDNSKA---QE-YSSIS----WDDTLKVNGITK------------HEFGSQPKVASANNDG-----FTAVLT   98 (287)
T ss_dssp             CCCSCEEEEECCST---TC-CEEEE----TTTEEEETTEEE------------EECSSCEEEEEECSSS-----EEEEEE
T ss_pred             CCCCCEEEEEecCC---Ce-EEEEe----eccccccccccc------------cccccceeeeeeccCC-----ceEEEe
Confidence            46788999999977   54 67777    699999965431            2234457788999998     788887


Q ss_pred             CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-eEEEEECCCCeeeeee-eccCCceeE
Q 040307           95 GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-TCVIWDIDREILETQL-VAHDREVYD  171 (339)
Q Consensus        95 ~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~-~~~~~~v~~  171 (339)
                      .+ .+.+|+..+++  ....+..+      .++.  +++| +++.+++++.++ .+++|++...+....+ ..|...+++
T Consensus        99 ~~~~~~~~~~~~~~--~~~~~~~~------~~~~--~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~  167 (287)
T d1pgua2          99 NDDDLLILQSFTGD--IIKSVRLN------SPGS--AVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY  167 (287)
T ss_dssp             TTSEEEEEETTTCC--EEEEEECS------SCEE--EEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred             ecccceeeecccee--eeeecccc------ceee--eeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence            76 89999988876  55555543      3444  4455 567777777765 7999999776655444 347788999


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC---------CCCeEEEEeeCCCeEEEEec
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA---------DPRFMATVGMDSNKVVVLDI  241 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------~~~~l~~~~~d~~~i~i~d~  241 (339)
                      ++|+ ++.+|++++.||.|++||+.+..........  |...|.+++|+|.         ++.+|++|+.|+. |++||+
T Consensus       168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~  244 (287)
T d1pgua2         168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSV  244 (287)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEES
T ss_pred             EEeccCccccccccccccccceeecccccccccccc--cccccceeeecccccccccccCCCCeeEeecCCCe-EEEEEC
Confidence            9999 7899999999999999999988754443333  7789999999873         4578999999999 999999


Q ss_pred             CCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          242 RFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      +...+.+..+.+|...|++++|+|++  .|++++.|+.|++|++
T Consensus       245 ~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         245 KRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence            88777888888999999999999986  6889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-26  Score=186.86  Aligned_cols=232  Identities=13%  Similarity=0.244  Sum_probs=185.0

Q ss_pred             ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      ..|...|+|++|  ++     ++||+|+ | +|+|||+++++  ++.++.+|.     .+|++++|+   +++|++|+.|
T Consensus        12 ~~~~~~V~c~~~--d~-----~~l~sgs~Dg~i~vWd~~~~~--~~~~l~~H~-----~~V~~v~~~---~~~l~s~s~D   74 (293)
T d1p22a2          12 SETSKGVYCLQY--DD-----QKIVSGLRDNTIKIWDKNTLE--CKRILTGHT-----GSVLCLQYD---ERVIITGSSD   74 (293)
T ss_dssp             CSSCCCEEEEEC--CS-----SEEEEEESSSCEEEEESSSCC--EEEEECCCS-----SCEEEEECC---SSEEEEEETT
T ss_pred             CCCCCCEEEEEE--cC-----CEEEEEeCCCeEEEEECCCCc--EEEEEecCC-----CCEeeeecc---cceeeccccc
Confidence            467888998765  67     7899987 5 99999999887  888999998     899999874   5799999999


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      +.|++|++..+........+...... .......++++..++.+.+||...............+...+..+.+.+   ..
T Consensus        75 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~  150 (293)
T d1p22a2          75 STVRVWDVNTGEMLNTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KY  150 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TE
T ss_pred             cccccccccccccccccccccccccc-ccccccceeecccccceeEeeccccccccccccccccccccccceecc---cc
Confidence            99999999988877666544433322 222577889999999999999998876555555445677888777754   67


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307          226 MATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL  305 (339)
Q Consensus       226 l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  305 (339)
                      +++++.|+. +++||++. .+++..+.++...+..+.+++   ..+++++.||.|++||++...            ....
T Consensus       151 ~~~~s~d~~-i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~------------~~~~  213 (293)
T d1p22a2         151 IVSASGDRT-IKVWNTST-CEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA------------CLRV  213 (293)
T ss_dssp             EEEEETTSE-EEEEETTT-CCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC------------EEEE
T ss_pred             cccccCCCc-eeeecCCC-CcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce------------eeee
Confidence            888899998 99999987 677888999988888887763   489999999999999999877            2224


Q ss_pred             eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ...+...+..+  ++++..+++++.||.|++|++
T Consensus       214 ~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         214 LEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             ECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEH
T ss_pred             ecccceeeeec--cccceEEEEEcCCCEEEEEEC
Confidence            44566666654  456678889999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=6.4e-26  Score=190.16  Aligned_cols=246  Identities=9%  Similarity=0.048  Sum_probs=178.5

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccC-CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYS-NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      .+....|...|.+++|+||   +++|++++.   .+ ..|++|++.  +++...    ...|...|.+++|+|++     
T Consensus        35 ~~~~~~~~~~v~~~~~spD---g~~l~~~~~---~~g~~v~v~d~~--~~~~~~----~~~~~~~v~~~~~spdg-----   97 (360)
T d1k32a3          35 YVLKVPEPLRIRYVRRGGD---TKVAFIHGT---REGDFLGIYDYR--TGKAEK----FEENLGNVFAMGVDRNG-----   97 (360)
T ss_dssp             BEEECSCCSCEEEEEECSS---SEEEEEEEE---TTEEEEEEEETT--TCCEEE----CCCCCCSEEEEEECTTS-----
T ss_pred             cEEEccCCCCEEEEEECCC---CCEEEEEEc---CCCCEEEEEECC--CCcEEE----eeCCCceEEeeeecccc-----
Confidence            3445678899999999999   999988772   22 368887655  344333    36899999999999999     


Q ss_pred             CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe----------CCCeEEEEECCCC
Q 040307           89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS----------VDTTCVIWDIDRE  156 (339)
Q Consensus        89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------~d~~v~i~d~~~~  156 (339)
                      ++|++++ + .+++|++.+.+  ....+..+.     ..+.+++|+| ++++|+.+.          .++.+++||+.++
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          98 KFAVVANDRFEIMTVDLETGK--PTVIERSRE-----AMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             SEEEEEETTSEEEEEETTTCC--EEEEEECSS-----SCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             cccceeccccccccccccccc--eeeeeeccc-----ccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccC
Confidence            7888877 4 99999999887  666777776     7888999998 999998654          3457999999888


Q ss_pred             eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcce-------eeEE------------------------
Q 040307          157 ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERS-------TIIY------------------------  204 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~------------------------  204 (339)
                      +..... .+...+..+.|+ +++.|++++.++.+.+||.......       ..+.                        
T Consensus       170 ~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  248 (360)
T d1k32a3         170 KIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD  248 (360)
T ss_dssp             EEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCC
T ss_pred             ceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccccccee
Confidence            755444 567788899999 8999999999999999987543211       0000                        


Q ss_pred             ---------eCCCCCCCeEEEEEecCCC-------------CeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEE
Q 040307          205 ---------ENPVQDCPLLRLEWNKADP-------------RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGIS  262 (339)
Q Consensus       205 ---------~~~~~~~~v~~~~~~p~~~-------------~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~  262 (339)
                               ..+...+....+...+ ++             .++++++.++. +++||+.. .+ ..   .|.+.|.+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~-~~-~~---~~~~~v~~~~  321 (360)
T d1k32a3         249 LNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKT-RK-VT---EVKNNLTDLR  321 (360)
T ss_dssp             CTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTT-CC-EE---EEEEEEEEEE
T ss_pred             ecccccceeecccCcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCE-EEEEECCC-Ce-EE---EecCCcCEEE
Confidence                     0000112222333322 11             13344445566 99999876 32 23   3445699999


Q ss_pred             eccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          263 WAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |+||| ++|++++.||.|++||++.++
T Consensus       322 ~SpDG-~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         322 LSADR-KTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             ECTTS-CEEEEEETTSCEEEEESSCTT
T ss_pred             ECCCC-CEEEEEECCCeEEEEECCCCC
Confidence            99999 699999999999999999877

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1.2e-22  Score=165.71  Aligned_cols=254  Identities=11%  Similarity=0.109  Sum_probs=187.2

Q ss_pred             cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeecCCcceeEEEeecCCCc
Q 040307           44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIHDDRTELKSLLNSNKTS  120 (339)
Q Consensus        44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~  120 (339)
                      .+++|.+||..  +++...    .......+..++|+|++     ++| ++++ + .|++||+.+++  .+..+..+.  
T Consensus        10 ~~~~v~v~D~~--t~~~~~----~i~~g~~p~~va~spdG-----~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~~~--   74 (301)
T d1l0qa2          10 ESDNISVIDVT--SNKVTA----TIPVGSNPMGAVISPDG-----TKVYVANAHSNDVSIIDTATNN--VIATVPAGS--   74 (301)
T ss_dssp             TTTEEEEEETT--TTEEEE----EEECSSSEEEEEECTTS-----SEEEEEEGGGTEEEEEETTTTE--EEEEEECSS--
T ss_pred             CCCEEEEEECC--CCeEEE----EEECCCCceEEEEeCCC-----CEEEEEECCCCEEEEEECCCCc--eeeeeeccc--
Confidence            68999996654  445444    23455678999999999     655 5554 3 99999999887  777777664  


Q ss_pred             cCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEE-EEEeCCCcEEEEECCCC
Q 040307          121 EFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVF-ASVSGDCSVRVFDLRDK  197 (339)
Q Consensus       121 ~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~i~d~~~~  197 (339)
                          .+..+.|++ ++. .++++..++.+.+|+..+++....+.. .....++.++ ++..+ +++..++.+.+|+..+.
T Consensus        75 ----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          75 ----SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             ----SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ----ccccccccc-ccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence                578999998 666 455566788999999999988888764 4567889999 66655 55666888999999988


Q ss_pred             cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe--
Q 040307          198 ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA--  275 (339)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--  275 (339)
                      ........    ...+..++++| ++..+++++.+...+.+|+... ........ ....+..++|++++. .++.+.  
T Consensus       149 ~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g~-~~~v~~~~  220 (301)
T d1l0qa2         149 AVINTVSV----GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGT-KAYVTNVD  220 (301)
T ss_dssp             EEEEEEEC----CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSS-EEEEEEEC
T ss_pred             ceeeeccc----CCCceEEEeec-cccceeeecccccccccccccc-eeeeeccc-ccCCcceeecccccc-cccccccc
Confidence            75554433    24678999998 7777777777766477777664 44344444 456678899999995 555443  


Q ss_pred             -CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307          276 -DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV  339 (339)
Q Consensus       276 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v  339 (339)
                       .++.|++||+.+.+             ......+...+.+++|+|+|++++ +++.|+.|++|++
T Consensus       221 ~~~~~v~v~D~~t~~-------------~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         221 KYFNTVSMIDTGTNK-------------ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             SSCCEEEEEETTTTE-------------EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ceeeeeeeeecCCCe-------------EEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence             34689999998877             444445556789999999999875 6668999999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=3.9e-24  Score=183.78  Aligned_cols=309  Identities=9%  Similarity=0.018  Sum_probs=200.8

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      .+++.+.++.....+..++||||   |++|++++    .|+.|++|+++..............+|...+.+++|+||+  
T Consensus        50 ~t~~~~~~l~~g~~~~~vafSPD---Gk~l~~~~----~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG--  120 (426)
T d1hzua2          50 DSKKIVKVIDTGYAVHISRMSAS---GRYLLVIG----RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED--  120 (426)
T ss_dssp             TTCSEEEEEECCSSEEEEEECTT---SCEEEEEE----TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT--
T ss_pred             CCCcEEEEEeCCCCeeEEEECCC---CCEEEEEe----CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCC--
Confidence            45778888888788999999999   99999999    7999999888766544433111113456667788899999  


Q ss_pred             CCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCCCc------cCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCC
Q 040307           86 LNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNKTS------EFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDR  155 (339)
Q Consensus        86 ~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~  155 (339)
                         +++++++  + .+.+||....+  ....+..+...      ........+.+++ ++..++... ..+.+.+++...
T Consensus       121 ---~~l~v~~~~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~  194 (426)
T d1hzua2         121 ---RYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKD  194 (426)
T ss_dssp             ---TEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSS
T ss_pred             ---CEEEEeecCCCeEEEEcCCccc--eeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEecc
Confidence               6655543  4 99999999887  55555544311      1113445566665 555544443 345666666655


Q ss_pred             Ceee-eeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE--Ee
Q 040307          156 EILE-TQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT--VG  230 (339)
Q Consensus       156 ~~~~-~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~  230 (339)
                      .... .....+...+..+.|+ ++++++++. .+..+.+++..+.+........ ..........+.+.....+..  ..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  273 (426)
T d1hzua2         195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-KTPHPGRGANFVHPKYGPVWSTSHL  273 (426)
T ss_dssp             SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS-SCCCCSCCEEEEETTTEEEEEEECT
T ss_pred             ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC-CcccccceeeeecCCCCceEEeccC
Confidence            4422 2233577788999999 677666655 5667889999988755544332 122223333333322222222  22


Q ss_pred             eCCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCCCCeEEE-------EeCCCcEEEEEecCCCCCCCCCCC
Q 040307          231 MDSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLYGRRLCS-------VADDSRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       231 ~d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-------~~~dg~v~iwd~~~~~~~~~~~~~  297 (339)
                      .++. +.+|+....      .+....+.+|...+..++|+|++ ++|++       ++.|++|+|||+.+.+. ..    
T Consensus       274 ~d~~-v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~~-~~----  346 (426)
T d1hzua2         274 GDGS-ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDA-KY----  346 (426)
T ss_dssp             TTCE-EEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTTS-CC----
T ss_pred             CCce-EEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCCc-Ce----
Confidence            3444 777776542      25567889999999999999999 58874       45678999999988760 00    


Q ss_pred             CCcccce----eeecccceeEEEEecCCCCceEEE-----ecCCeEEEEeC
Q 040307          298 SGDVEPE----LCYQSMAEINVVRWSPLELDWIAI-----AFVNKLQLLKV  339 (339)
Q Consensus       298 ~~~~~~~----~~~~~~~~i~~~~~~p~~~~l~~~-----~~d~~v~~w~v  339 (339)
                        ...+.    ....+...|.+++|||||++++.+     +.++.|+||+.
T Consensus       347 --~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         347 --QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             --EEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             --EEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence              00010    122456679999999999877543     25788999973

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.1e-24  Score=185.42  Aligned_cols=310  Identities=8%  Similarity=-0.059  Sum_probs=186.9

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      .+++.+.++.....+..++||||   |++|++++    .|+.|.+|++...+............|.+.+.+..|+||+  
T Consensus        50 ~t~~v~~~~~~g~~~~~v~fSpD---G~~l~~~s----~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG--  120 (432)
T d1qksa2          50 STYEIKTVLDTGYAVHISRLSAS---GRYLFVIG----RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED--  120 (432)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTT---SCEEEEEE----TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTT--
T ss_pred             CCCcEEEEEeCCCCeeEEEECCC---CCEEEEEc----CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCC--
Confidence            45677888887778999999999   99999998    7999999888765544433111112455566777888999  


Q ss_pred             CCCCeE-EEeC-C-cEEEEeecCCcceeEEEeecCC------CccCCCCEEEEEEcCCCCCE-EEEEeCCCeEEEEECCC
Q 040307           86 LNPDIV-ATSG-D-SLRLWEIHDDRTELKSLLNSNK------TSEFSSAITSFDWAGFDTRR-VATCSVDTTCVIWDIDR  155 (339)
Q Consensus        86 ~~~~~l-a~~~-~-~i~iw~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~-l~~~~~d~~v~i~d~~~  155 (339)
                         +.| ++++ + .|++||..+++  .+..+..+.      ..........+.++| ++.. +++...++.|.+||..+
T Consensus       121 ---~~l~vs~~~~~~v~i~d~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~  194 (432)
T d1qksa2         121 ---KYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTD  194 (432)
T ss_dssp             ---TEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTC
T ss_pred             ---CEEEEEcCCCCeEEEEeCcccc--ceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccC
Confidence               654 5665 4 99999999987  555554432      112235667888998 6655 56667789999999988


Q ss_pred             Ceeeeeee-ccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCC--CCCCCeEEEEEecCCCCeEEEEe
Q 040307          156 EILETQLV-AHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENP--VQDCPLLRLEWNKADPRFMATVG  230 (339)
Q Consensus       156 ~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~  230 (339)
                      .+...... .+...+.+++|+ +++++++++. ++.+.++|..+.+.........  .+........+. ..+...++..
T Consensus       195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~  273 (432)
T d1qksa2         195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP-TFGPVWATSH  273 (432)
T ss_dssp             SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET-TTEEEEEEEB
T ss_pred             CCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecC-CCCceecccc
Confidence            76443322 355678899999 7787766665 5678889998876544433221  122223333332 2444444433


Q ss_pred             e-CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC-------------CCC-C
Q 040307          231 M-DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR-------------SGN-G  295 (339)
Q Consensus       231 ~-d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~-------------~~~-~  295 (339)
                      . ++. +.+|+.....     +..|...+....++|++ ..+++++.++..++|........             ... .
T Consensus       274 lg~~~-v~~~~~~~~~-----~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~  346 (432)
T d1qksa2         274 MGDDS-VALIGTDPEG-----HPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD  346 (432)
T ss_dssp             SSSSE-EEEEECCTTT-----CTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred             cCCce-EEeccccccc-----ccccccEEEEEEEcCCC-CeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhccc
Confidence            2 344 7777654321     12233344444555544 24444444444444443322100             000 0


Q ss_pred             CCCCccc------ceeeecccceeEEEEecCCCCceEEEe-----cCCeEEEEe
Q 040307          296 GPSGDVE------PELCYQSMAEINVVRWSPLELDWIAIA-----FVNKLQLLK  338 (339)
Q Consensus       296 ~~~~~~~------~~~~~~~~~~i~~~~~~p~~~~l~~~~-----~d~~v~~w~  338 (339)
                      +......      ...+..|...|.+++|+|||++++.+.     .++.|+||+
T Consensus       347 s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         347 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            0000000      001124667899999999999876543     367899987

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=2.6e-22  Score=166.21  Aligned_cols=271  Identities=10%  Similarity=0.019  Sum_probs=187.6

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEee-cCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeecCCcc
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIF-DHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIHDDRT  108 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~~~~~  108 (339)
                      ++|++++    .|++|+|||..  +.+...  .+.. .+...+.+++|+||+     +++ ++++ + .|.+||+.+++ 
T Consensus         2 ~~~vt~~----~d~~v~v~D~~--s~~~~~--~i~~~~~~~~~~~i~~spDg-----~~l~v~~~~~~~v~v~D~~t~~-   67 (337)
T d1pbyb_           2 DYILAPA----RPDKLVVIDTE--KMAVDK--VITIADAGPTPMVPMVAPGG-----RIAYATVNKSESLVKIDLVTGE-   67 (337)
T ss_dssp             EEEEEEE----TTTEEEEEETT--TTEEEE--EEECTTCTTCCCCEEECTTS-----SEEEEEETTTTEEEEEETTTCC-
T ss_pred             eEEEEEc----CCCEEEEEECC--CCeEEE--EEECCCCCCCccEEEECCCC-----CEEEEEECCCCeEEEEECCCCc-
Confidence            5889999    79999997665  444443  3322 344568899999999     655 5655 3 99999999987 


Q ss_pred             eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe------------CCCeEEEEECCCCeeeeeeeccCCceeEEEec-
Q 040307          109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS------------VDTTCVIWDIDREILETQLVAHDREVYDISWG-  175 (339)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-  175 (339)
                       .+..+..+....+...+..++|+| ++++++++.            .+..+.+||..+++....+. +...+..++|+ 
T Consensus        68 -~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~  144 (337)
T d1pbyb_          68 -TLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWAR  144 (337)
T ss_dssp             -EEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECT
T ss_pred             -EEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcC
Confidence             666665544222224456899998 888888776            36789999999999888876 44568899999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC---CeEEEEEec----------------CCCCeEEEEeeCCCeE
Q 040307          176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC---PLLRLEWNK----------------ADPRFMATVGMDSNKV  236 (339)
Q Consensus       176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~p----------------~~~~~l~~~~~d~~~i  236 (339)
                      ++.++++++.  .+.+||..+.+.............   ......+.+                .....+..+..++. +
T Consensus       145 dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  221 (337)
T d1pbyb_         145 DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-L  221 (337)
T ss_dssp             TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-E
T ss_pred             CCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc-E
Confidence            7888888764  478899988764433221100000   000001100                01111122233344 8


Q ss_pred             EEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEE
Q 040307          237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVV  316 (339)
Q Consensus       237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  316 (339)
                      .+||..........+..+...+..+.++|++ .+++.+  ++.+++||+.+.+             ......+...+.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~-------------~~~~~~~~~~~~~~  285 (337)
T d1pbyb_         222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------------SIKRVPLPHSYYSV  285 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------------EEEEEECSSCCCEE
T ss_pred             EEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCCc-------------EEEEEcCCCCEEEE
Confidence            8999887444444566677888999999998 477665  5899999999887             55555667789999


Q ss_pred             EecCCCCceEEEecCCeEEEEeC
Q 040307          317 RWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       317 ~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      +|+|+|+++++++.|+.|++|++
T Consensus       286 ~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         286 NVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EECTTSCEEEEESBSSEEEEEET
T ss_pred             EECCCCCEEEEEeCCCcEEEEEC
Confidence            99999999999999999999984

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.2e-22  Score=168.88  Aligned_cols=276  Identities=9%  Similarity=0.023  Sum_probs=188.0

Q ss_pred             EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEE
Q 040307           23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLR   99 (339)
Q Consensus        23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~   99 (339)
                      ++|+++   +++|++++    .++.|.+||+..  .+...  .+...+...+.+++|+||+     +++ +++. + .|+
T Consensus         2 ~a~~~~---~~~l~~~~----~~~~v~v~D~~t--~~~~~--t~~~~~~~~p~~l~~spDG-----~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           2 PALKAG---HEYMIVTN----YPNNLHVVDVAS--DTVYK--SCVMPDKFGPGTAMMAPDN-----RTAYVLNNHYGDIY   65 (346)
T ss_dssp             CCCCTT---CEEEEEEE----TTTEEEEEETTT--TEEEE--EEECSSCCSSCEEEECTTS-----SEEEEEETTTTEEE
T ss_pred             ccCCCC---CcEEEEEc----CCCEEEEEECCC--CCEEE--EEEcCCCCCcceEEECCCC-----CEEEEEECCCCcEE
Confidence            478899   99999999    799999977654  44443  4445677788999999999     554 5655 3 899


Q ss_pred             EEeecCCcceeEEEeecCCC-ccCCCCEEEEEEcCCCCCEEEEEe------------CCCeEEEEECCCCeeeeeeecc-
Q 040307          100 LWEIHDDRTELKSLLNSNKT-SEFSSAITSFDWAGFDTRRVATCS------------VDTTCVIWDIDREILETQLVAH-  165 (339)
Q Consensus       100 iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~-  165 (339)
                      +||+.+++  ....+..... ......+..++|+| +++++++++            .++.+.+|+..+++....+..+ 
T Consensus        66 ~~d~~t~~--~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  142 (346)
T d1jmxb_          66 GIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  142 (346)
T ss_dssp             EEETTTTE--EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             EEeCccCe--eeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee
Confidence            99999886  4444433221 11112456789998 898887765            4778999999887755544332 


Q ss_pred             -CCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec------------------------
Q 040307          166 -DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK------------------------  220 (339)
Q Consensus       166 -~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p------------------------  220 (339)
                       ...+..+.++++..++..+  +.+.+||+.+.+....+...    .....+.++|                        
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
T d1jmxb_         143 MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLR----NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  216 (346)
T ss_dssp             CCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECST----TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             ccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecC----CCccceEEeccccEEEEEecCCCceEeeeeeeee
Confidence             3456666777444444433  56899999887644433221    1122222332                        


Q ss_pred             -CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307          221 -ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG  299 (339)
Q Consensus       221 -~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  299 (339)
                       .....++++..+.. +.+||.............|...+..+.+++++. .++... ++.|.+||+...+          
T Consensus       217 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~~~~----------  283 (346)
T d1jmxb_         217 KDDKQDPATADLLYG-YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLKQRK----------  283 (346)
T ss_dssp             -------CCCEEEEE-EEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE-ESEEEEEETTTTE----------
T ss_pred             ccCceeEeeccCCce-EEEEECCCCceEEEEeecccceeEEEEEeCCCC-EEEEec-CCeEEEEECCCCc----------
Confidence             12223333444455 888998875544555667888899999999984 666655 4579999998877          


Q ss_pred             cccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          300 DVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                         ......+...+.+++|+|||+.+++++.|+.|++|++
T Consensus       284 ---~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         284 ---LIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             ---EEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ---EEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence               4555556667999999999999999999999999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.1e-20  Score=154.04  Aligned_cols=251  Identities=12%  Similarity=0.091  Sum_probs=182.1

Q ss_pred             CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307            6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET   85 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~   85 (339)
                      .+++.+.++.....+..++|+|+   |++|++++.   .++.|++|++..  .+...  .  ......+..+.|++++. 
T Consensus        20 ~t~~~~~~i~~g~~p~~va~spd---G~~l~v~~~---~~~~i~v~d~~t--~~~~~--~--~~~~~~~~~~~~~~~~~-   86 (301)
T d1l0qa2          20 TSNKVTATIPVGSNPMGAVISPD---GTKVYVANA---HSNDVSIIDTAT--NNVIA--T--VPAGSSPQGVAVSPDGK-   86 (301)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTT---SSEEEEEEG---GGTEEEEEETTT--TEEEE--E--EECSSSEEEEEECTTSS-
T ss_pred             CCCeEEEEEECCCCceEEEEeCC---CCEEEEEEC---CCCEEEEEECCC--Cceee--e--eeccccccccccccccc-
Confidence            45677888888888999999999   998754442   689999977653  34333  2  33344678999999993 


Q ss_pred             CCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeeee
Q 040307           86 LNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDIDREILETQL  162 (339)
Q Consensus        86 ~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~  162 (339)
                         .+++++.+  .+.+|+..+++  ....+..+      ....++.|+| ++..+ +++..++.+.+|+..+.+....+
T Consensus        87 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          87 ---QVYVTNMASSTLSVIDTTSNT--VAGTVKTG------KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             ---EEEEEETTTTEEEEEETTTTE--EEEEEECS------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ---cccccccccceeeecccccce--eeeecccc------ccceEEEeec-CCCeeeeeeccccceeeeeccccceeeec
Confidence               34445543  89999998876  66666654      4678899998 77665 55666889999999999888877


Q ss_pred             eccCCceeEEEec-CCcEEEEEeCC-CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEE
Q 040307          163 VAHDREVYDISWG-GFNVFASVSGD-CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVV  238 (339)
Q Consensus       163 ~~~~~~v~~~~~~-~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i  238 (339)
                      .. ...+..+.++ ++..+++++.+ +.+.+|+............    ...+..++|++ ++..++++..+.  ..|++
T Consensus       155 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v  228 (301)
T d1l0qa2         155 SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNP-EGTKAYVTNVDKYFNTVSM  228 (301)
T ss_dssp             EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECT-TSSEEEEEEECSSCCEEEE
T ss_pred             cc-CCCceEEEeeccccceeeecccccccccccccceeeeecccc----cCCcceeeccc-cccccccccccceeeeeee
Confidence            64 4567889999 67777666655 5666777666653333222    24678899998 777776655443  23999


Q ss_pred             EecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       239 ~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ||..+ .+.+..+.. ...+.+++|+|+|..++++++.|+.|++||+.+.+
T Consensus       229 ~D~~t-~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         229 IDTGT-NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EETTT-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eecCC-CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            99987 555666654 45689999999995345678889999999998876

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.2e-20  Score=151.67  Aligned_cols=278  Identities=11%  Similarity=0.056  Sum_probs=184.8

Q ss_pred             EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeecCCccee
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIHDDRTEL  110 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~~~~~~~  110 (339)
                      .++++.    ++++|++|+++..+.. ..  .....|.+.+..|+|+||+     ++| +++. + .|++|++.......
T Consensus         6 v~v~~~----~~~~I~v~~~~~~~~l-~~--~~~~~~~~~v~~la~spDG-----~~L~v~~~~d~~i~~~~i~~~~~~~   73 (333)
T d1ri6a_           6 VYIASP----ESQQIHVWNLNHEGAL-TL--TQVVDVPGQVQPMVVSPDK-----RYLYVGVRPEFRVLAYRIAPDDGAL   73 (333)
T ss_dssp             EEEEEG----GGTEEEEEEECTTSCE-EE--EEEEECSSCCCCEEECTTS-----SEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEECC----CCCcEEEEEEcCCCCe-EE--EEEEcCCCCEeEEEEeCCC-----CEEEEEECCCCeEEEEEEeCCCCcE
Confidence            345555    7999999999865432 22  1135788999999999999     666 5554 4 99999998765222


Q ss_pred             EEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeee--eeccCCceeEEEec-CCcEEEEEeC
Q 040307          111 KSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQ--LVAHDREVYDISWG-GFNVFASVSG  185 (339)
Q Consensus       111 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~-~~~~l~~~~~  185 (339)
                      ... ...+.     ..+..++|+| ++++|++++. ++.|.+|+.........  ...+...+.++.++ ++++++.++.
T Consensus        74 ~~~~~~~~~-----~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          74 TFAAESALP-----GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             EEEEEEECS-----SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             EEeeecccC-----CCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence            111 11122     4567899998 9998888875 67899998876654333  33566678889999 6777776664


Q ss_pred             -CCcEEEEECCCCcceeeEE---eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE---Ee------
Q 040307          186 -DCSVRVFDLRDKERSTIIY---ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV---LS------  252 (339)
Q Consensus       186 -d~~i~i~d~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~---~~------  252 (339)
                       +..|.+|+...........   ...........++|++ ++.+++..........+++..........   ..      
T Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  226 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  226 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeecccccceeeeeeeeeeecCC
Confidence             4679999988765332211   1112335678899998 77777666555444888887653332221   11      


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe-cC
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-FV  331 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d  331 (339)
                      ........+++++++..+++++..++.+.+|++.....         .............+.+++|+|||++|++++ .+
T Consensus       227 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS---------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC---------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             CccccceeEEEecccCceeeecccCCeEEEEEEcCCCC---------EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence            12235677899999965566666788999999987650         001112223445678999999999877665 56


Q ss_pred             CeEEEEeC
Q 040307          332 NKLQLLKV  339 (339)
Q Consensus       332 ~~v~~w~v  339 (339)
                      +.|++|++
T Consensus       298 ~~v~v~~i  305 (333)
T d1ri6a_         298 HHISVYEI  305 (333)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEE
Confidence            89999964

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.2e-21  Score=168.00  Aligned_cols=232  Identities=15%  Similarity=0.069  Sum_probs=159.2

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~  109 (339)
                      .-++++.+    .+|+|.|||.  .+.++..  .+  .....+..++||||+     +++++++ | .+++||+.+++..
T Consensus        32 ~~~~v~~~----d~g~v~v~D~--~t~~v~~--~~--~~g~~~~~v~fSpDG-----~~l~~~s~dg~v~~~d~~t~~~~   96 (432)
T d1qksa2          32 NLFSVTLR----DAGQIALIDG--STYEIKT--VL--DTGYAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPT   96 (432)
T ss_dssp             GEEEEEET----TTTEEEEEET--TTCCEEE--EE--ECSSCEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCC
T ss_pred             cEEEEEEc----CCCEEEEEEC--CCCcEEE--EE--eCCCCeeEEEECCCC-----CEEEEEcCCCCEEEEEeeCCCce
Confidence            44456777    7999999664  4555554  33  233469999999999     8888876 4 9999999887643


Q ss_pred             eEEEee---cCCCccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeeeeecc-----------CCceeEEEe
Q 040307          110 LKSLLN---SNKTSEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDIDREILETQLVAH-----------DREVYDISW  174 (339)
Q Consensus       110 ~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~-----------~~~v~~~~~  174 (339)
                      ....++   .|.     ..+.+..|+| |+++| ++++.++.|++||..+++.+..+..+           ......+.+
T Consensus        97 ~~~~i~~~~~~~-----~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (432)
T d1qksa2          97 TVAEIKIGSEAR-----SIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  170 (432)
T ss_dssp             EEEEEECCSEEE-----EEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             EEEEEecCCCCC-----CeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEE
Confidence            443333   233     4556667787 88875 77888999999999999887766543           334556777


Q ss_pred             c-CCcE-EEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307          175 G-GFNV-FASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS  252 (339)
Q Consensus       175 ~-~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~  252 (339)
                      + ++.. +++...++.|.+||..+.+........  ....+..++|+| +++++++++.++..+.++|... .+.+..+.
T Consensus       171 s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~--~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~-~~~~~~~~  246 (432)
T d1qksa2         171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE-GKLVAIED  246 (432)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT-TEEEEEEE
T ss_pred             CCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc--ccCccccceECC-CCCEEEEeccccceEEEeeccc-ceEEEEec
Confidence            8 5554 456677899999999887644333222  335788999999 8898888887776699999876 44444433


Q ss_pred             c-----CCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCC
Q 040307          253 K-----HEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPG  289 (339)
Q Consensus       253 ~-----~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~  289 (339)
                      .     |........+...+ ...++.. .++.+.+|+.....
T Consensus       247 ~g~~~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~  288 (432)
T d1qksa2         247 TGGQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEG  288 (432)
T ss_dssp             CSSSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTT
T ss_pred             cCccccccCcccceecCCCC-ceecccccCCceEEeccccccc
Confidence            2     33344445555554 3444443 47889999877654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=2.5e-21  Score=166.15  Aligned_cols=290  Identities=11%  Similarity=0.021  Sum_probs=179.5

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEE
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLR   99 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~   99 (339)
                      ...++++.. ..+++++.    .||.|+|||..  +.+...  .+  .+...+..++|+|||     ++|++++ | .++
T Consensus        23 ~~~~~~d~~-~~~~V~~~----~dg~v~vwD~~--t~~~~~--~l--~~g~~~~~vafSPDG-----k~l~~~~~d~~v~   86 (426)
T d1hzua2          23 KQLNDLDLP-NLFSVTLR----DAGQIALVDGD--SKKIVK--VI--DTGYAVHISRMSASG-----RYLLVIGRDARID   86 (426)
T ss_dssp             SCCSCCCGG-GEEEEEET----TTTEEEEEETT--TCSEEE--EE--ECCSSEEEEEECTTS-----CEEEEEETTSEEE
T ss_pred             cccccCCCC-eEEEEEEc----CCCEEEEEECC--CCcEEE--EE--eCCCCeeEEEECCCC-----CEEEEEeCCCCEE
Confidence            344555510 33455566    79999997655  444443  33  334569999999999     7887776 5 999


Q ss_pred             EEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CC
Q 040307          100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GF  177 (339)
Q Consensus       100 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~  177 (339)
                      +||+.+++......+....  ++...+.+++|+| ++++++ ++..++.+.+||..+++....+..|...+..+.+. ++
T Consensus        87 vwd~~t~~~~~~~~i~~~~--~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          87 MIDLWAKEPTKVAEIKIGI--EARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEETTSSSCEEEEEEECCS--EEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             EEEccCCceeEEEEEeCCC--CCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            9999988743433333211  1115566778888 888765 45589999999999998887776665544444443 21


Q ss_pred             -cEEEEEeCCC-----------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307          178 -NVFASVSGDC-----------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT  245 (339)
Q Consensus       178 -~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~  245 (339)
                       ...+..+.|+           .+.+++.............  +...+..+.|+| ++++++++..+...+.+++... .
T Consensus       164 ~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~-~  239 (426)
T d1hzua2         164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKD-R  239 (426)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE--CCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTT-T
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec--cCCccEeeeECC-CCcEEEeeeecccceeeeeccc-c
Confidence             2233333333           4444444443322222222  456788999998 8888888777666699999887 4


Q ss_pred             CceEEEecC--CCCeeEEEeccCCCCeEE--EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          246 NPVVVLSKH--EGSVNGISWAPLYGRRLC--SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       246 ~~~~~~~~~--~~~v~~~~~~p~~~~~l~--~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      +.+......  ........+.+.+...+.  +.+.|+.+.+|+.........     .........+|...+..++|+|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~-----~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY-----AWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT-----BTSEEEEEECSSSCCCCEECCTT
T ss_pred             cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc-----cceEeEEEecCCCceeEEEcCCC
Confidence            444444332  223334444444322232  334678888888766541000     00112345578889999999999


Q ss_pred             CCceEE-------EecCCeEEEEeC
Q 040307          322 ELDWIA-------IAFVNKLQLLKV  339 (339)
Q Consensus       322 ~~~l~~-------~~~d~~v~~w~v  339 (339)
                      ++++++       +..|++|+||++
T Consensus       315 g~~l~v~~~~~~s~~~~~tv~vwd~  339 (426)
T d1hzua2         315 SSHLYVDTTFNPDARISQSVAVFDL  339 (426)
T ss_dssp             CSEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CceEEEeecCCCCcccCCEEEEEEC
Confidence            998774       345789999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=4.7e-18  Score=140.23  Aligned_cols=260  Identities=12%  Similarity=0.065  Sum_probs=174.5

Q ss_pred             ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307            9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus         9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~   88 (339)
                      +.+..+.+...+..++|+||   |++|++++.   .++.|++|+++........  .....+...+..++|+|++     
T Consensus        28 ~~~~~~~~~~~v~~la~spD---G~~L~v~~~---~d~~i~~~~i~~~~~~~~~--~~~~~~~~~p~~l~~spDg-----   94 (333)
T d1ri6a_          28 TLTQVVDVPGQVQPMVVSPD---KRYLYVGVR---PEFRVLAYRIAPDDGALTF--AAESALPGSLTHISTDHQG-----   94 (333)
T ss_dssp             EEEEEEECSSCCCCEEECTT---SSEEEEEET---TTTEEEEEEECTTTCCEEE--EEEEECSSCCSEEEECTTS-----
T ss_pred             EEEEEEcCCCCEeEEEEeCC---CCEEEEEEC---CCCeEEEEEEeCCCCcEEE--eeecccCCCceEEEEcCCC-----
Confidence            45566778899999999999   999976662   5899999999877665544  2223556678899999999     


Q ss_pred             CeEEEeC--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeee--
Q 040307           89 DIVATSG--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQL--  162 (339)
Q Consensus        89 ~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~--  162 (339)
                      ++|++++  + .+.+|+..............+.     ..+.++.++| ++++++.++. +..|.+|+..........  
T Consensus        95 ~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (333)
T d1ri6a_          95 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-----DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDP  168 (333)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-----TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             CEEeecccCCCceeeeccccccceecccccCCC-----ccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeec
Confidence            6666664  3 8999998887633444444444     5677899998 8887777664 567999998765422211  


Q ss_pred             ----eccCCceeEEEec-CCcEEEEE-eCCCcEEEEECCCCcceee----EEe---CCCCCCCeEEEEEecCCCCeEEEE
Q 040307          163 ----VAHDREVYDISWG-GFNVFASV-SGDCSVRVFDLRDKERSTI----IYE---NPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       163 ----~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~----~~~---~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                          .........++|+ ++..++.. ...+...+++.........    ...   ..........++++| ++++++..
T Consensus       169 ~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~~~~~  247 (333)
T d1ri6a_         169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYAC  247 (333)
T ss_dssp             EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEE
T ss_pred             eeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCceeee
Confidence                1234456789999 55555544 4566788888765432211    111   111234567789998 77766665


Q ss_pred             eeCCCeEEEEecCCCCCceEE--EecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCC
Q 040307          230 GMDSNKVVVLDIRFPTNPVVV--LSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPG  289 (339)
Q Consensus       230 ~~d~~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~  289 (339)
                      ......+.+|++.........  .......+.+++|+|+| ++|++++ .++.|++|++....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG-k~l~va~~~~~~v~v~~id~~t  309 (333)
T d1ri6a_         248 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQ  309 (333)
T ss_dssp             ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTT
T ss_pred             cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC-CEEEEEECCCCeEEEEEEECCC
Confidence            554444999998764443322  22334567899999999 5666554 56899999886543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=9.4e-19  Score=144.50  Aligned_cols=249  Identities=9%  Similarity=-0.032  Sum_probs=167.9

Q ss_pred             CCceeeeeec---cCCeeEEEeeecCCcccEEE-EeeeccccCCeEEEEecCCCCCcccceeeE--eecCCCCceEEEEc
Q 040307            7 KKPGVHTYMA---QWPISTVAWSVRHDRKSRLA-VGSFLEDYSNKIELVNFNPETSDFSADNRL--IFDHPYTPTNIAFF   80 (339)
Q Consensus         7 ~~~~~~~~~~---~~~v~~i~~sp~~~~~~~la-~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~   80 (339)
                      +.+.+.++..   ...+.+++|+||   |++|+ +++    .++.|.+||+...  +.......  ...+...+..++|+
T Consensus        20 s~~~~~~i~~~~~~~~~~~i~~spD---g~~l~v~~~----~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~v~~s   90 (337)
T d1pbyb_          20 KMAVDKVITIADAGPTPMVPMVAPG---GRIAYATVN----KSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALS   90 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTT---SSEEEEEET----TTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEEC
T ss_pred             CCeEEEEEECCCCCCCccEEEECCC---CCEEEEEEC----CCCeEEEEECCCC--cEEEEEecCCCcccccceeeEEEc
Confidence            3455555543   345889999999   98875 455    6899999877653  33220011  01123456789999


Q ss_pred             CCCCCCCCCeEEEeC-------------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           81 PSEETLNPDIVATSG-------------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        81 ~~~~~~~~~~la~~~-------------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      |++     +.++++.             + .+.+||..+.+  ....+..+      ..+..++|+| +++++++++.  
T Consensus        91 ~dg-----~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~------~~~~~~~~s~-dg~~l~~~~~--  154 (337)
T d1pbyb_          91 PDG-----KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFEAP------RQITMLAWAR-DGSKLYGLGR--  154 (337)
T ss_dssp             TTS-----SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEECC------SSCCCEEECT-TSSCEEEESS--
T ss_pred             CCC-----cEEEEeecCCcceeeeccccccceeeccccCCe--EEEecccc------CCceEEEEcC-CCCEEEEEcC--
Confidence            999     6665552             2 67788888876  55555543      4677899998 9999998864  


Q ss_pred             eEEEEECCCCeeeeeeeccCCce------eEEEec------------------CCcEEEEEeCCCcEEEEECCCCcceee
Q 040307          147 TCVIWDIDREILETQLVAHDREV------YDISWG------------------GFNVFASVSGDCSVRVFDLRDKERSTI  202 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~~~v------~~~~~~------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~  202 (339)
                      .+.+||..+++....+..+....      ....+.                  +...+.....++.+.+||...+.....
T Consensus       155 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence            57789999888766654322110      000110                  011111122345688999988875544


Q ss_pred             EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307          203 IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALI  282 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i  282 (339)
                      ....  +...+..+.++| ++.+++.+  ++. +++||+.+ .+.+..+. +...+.+++|+|+| ++|++++.|+.|++
T Consensus       235 ~~~~--~~~~~~~~~~~~-~~~~~~~~--~~~-i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG-~~l~v~~~~~~i~v  305 (337)
T d1pbyb_         235 EVRI--MDVFYFSTAVNP-AKTRAFGA--YNV-LESFDLEK-NASIKRVP-LPHSYYSVNVSTDG-STVWLGGALGDLAA  305 (337)
T ss_dssp             EEEE--CSSCEEEEEECT-TSSEEEEE--ESE-EEEEETTT-TEEEEEEE-CSSCCCEEEECTTS-CEEEEESBSSEEEE
T ss_pred             EecC--CCcceEEEEecc-cceEEEEc--ccc-EEEEECCC-CcEEEEEc-CCCCEEEEEECCCC-CEEEEEeCCCcEEE
Confidence            4443  456788889997 77777654  455 99999987 55566654 56788999999999 59999999999999


Q ss_pred             EEecCCC
Q 040307          283 WEVVGPG  289 (339)
Q Consensus       283 wd~~~~~  289 (339)
                      ||..+.+
T Consensus       306 ~D~~t~~  312 (337)
T d1pbyb_         306 YDAETLE  312 (337)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9999877

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=2.3e-16  Score=132.18  Aligned_cols=287  Identities=8%  Similarity=-0.086  Sum_probs=178.6

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeee-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSF-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      .+..++.+++++|+   ++.+++... .....+.|.+  ++.++++...  .+ ..+  ....++|+||+     +.|++
T Consensus        18 ~~~~p~~~~a~spd---g~~~~~~~~~~~~~~~~v~v--~D~~tg~~~~--~~-~~~--~~~~~a~SpDG-----~~l~v   82 (373)
T d2madh_          18 AADGPTNDEAPGAD---GRRSYINLPAHHSAIIQQWV--LDAGSGSILG--HV-NGG--FLPNPVAAHSG-----SEFAL   82 (373)
T ss_pred             cCCCCccccccCCC---CCEEEEEcccccCCCceEEE--EECCCCCEEE--EE-eCC--CCccEEEcCCC-----CEEEE
Confidence            45688999999999   998877531 0112344555  6666666554  33 222  23379999999     67766


Q ss_pred             eC------------CcEEEEeecCCcceeEEEeecCCCccC--CCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCe
Q 040307           94 SG------------DSLRLWEIHDDRTELKSLLNSNKTSEF--SSAITSFDWAGFDTRRVATCS--VDTTCVIWDIDREI  157 (339)
Q Consensus        94 ~~------------~~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~  157 (339)
                      ++            +.|.+||..+++  ....+..+.....  ......+.|+| +++.++...  .++.+.+|+....+
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~  159 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSS  159 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCc--EEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCe
Confidence            53            269999999987  5555544431100  01224577887 777655443  45678888887765


Q ss_pred             eeeeeeccCCceeEEEec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeC
Q 040307          158 LETQLVAHDREVYDISWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENP---VQDCPLLRLEWNKADPRFMATVGMD  232 (339)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d  232 (339)
                      .....    ....++.++ ++ ..+++.+.|+.+.+||..............   ........+.+.+ ++ .++..+.+
T Consensus       160 ~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~  233 (373)
T d2madh_         160 DDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYS  233 (373)
T ss_pred             EEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cc-eEEEecCC
Confidence            44333    345677888 44 466788999999999998877544332211   1112233444543 44 44455666


Q ss_pred             CCeEEEEecCCCCCc-eEEEecC----------CCCeeEEEeccCCCC---------eEEEEeCCCcEEEEEecCCCCCC
Q 040307          233 SNKVVVLDIRFPTNP-VVVLSKH----------EGSVNGISWAPLYGR---------RLCSVADDSRALIWEVVGPGYRS  292 (339)
Q Consensus       233 ~~~i~i~d~~~~~~~-~~~~~~~----------~~~v~~~~~~p~~~~---------~l~~~~~dg~v~iwd~~~~~~~~  292 (339)
                      +. +.+|+....... ......+          ......++++|++..         .+++...++.+.+||....+   
T Consensus       234 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~---  309 (373)
T d2madh_         234 GK-ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---  309 (373)
T ss_pred             ce-EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc---
Confidence            66 889987753211 1111111          122344566666531         23445566789999998887   


Q ss_pred             CCCCCCCcccceeeecccceeEEEEecCCCCce--EEEecCCeEEEEeC
Q 040307          293 GNGGPSGDVEPELCYQSMAEINVVRWSPLELDW--IAIAFVNKLQLLKV  339 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l--~~~~~d~~v~~w~v  339 (339)
                                ......+...+..++|+|||+.+  ++++.|+.|++|++
T Consensus       310 ----------~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         310 ----------TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             ----------EEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence                      55556677789999999999853  46779999999985

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=2.6e-16  Score=130.84  Aligned_cols=285  Identities=9%  Similarity=0.011  Sum_probs=174.3

Q ss_pred             CeeEEEeeecCCcccEEEEeee-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307           19 PISTVAWSVRHDRKSRLAVGSF-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--   95 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--   95 (339)
                      |+.-.+.+|+   ++.+++... ....++.|.+||  ..+++...  .+ .  .+....++|+||+     +.|++.+  
T Consensus         3 p~~~~a~spd---g~~~~v~~~~~~~~~~~v~v~D--~~tg~~~~--~~-~--~g~~~~~a~SpDg-----~~l~v~~~~   67 (355)
T d2bbkh_           3 PRILEAPAPD---ARRVYVNDPAHFAAVTQQFVID--GEAGRVIG--MI-D--GGFLPNPVVADDG-----SFIAHASTV   67 (355)
T ss_dssp             CCBCCCCCCC---TTEEEEEECGGGCSSEEEEEEE--TTTTEEEE--EE-E--ECSSCEEEECTTS-----SCEEEEEEE
T ss_pred             CcEeEeeCCC---CCEEEEEecccCCCcCeEEEEE--CCCCcEEE--EE-E--CCCCCceEEcCCC-----CEEEEEeCC
Confidence            4455577899   888876542 111355688855  44555443  22 1  2334579999999     5555431  


Q ss_pred             ---------C-cEEEEeecCCcceeEEEeecCCCcc--CCCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeee
Q 040307           96 ---------D-SLRLWEIHDDRTELKSLLNSNKTSE--FSSAITSFDWAGFDTRRVATCS--VDTTCVIWDIDREILETQ  161 (339)
Q Consensus        96 ---------~-~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~  161 (339)
                               + .|++||..+++  ....+..+....  .......++|+| +++.++.++  .+..+.+|+..+++.+..
T Consensus        68 ~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d2bbkh_          68 FSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRM  144 (355)
T ss_dssp             EEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             CccccccCCCCEEEEEECCCCC--EEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeE
Confidence                     2 79999999987  555544332111  112345688998 888777764  467899999999988877


Q ss_pred             eeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307          162 LVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMATVGMDSNKVVV  238 (339)
Q Consensus       162 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i  238 (339)
                      +..+....  .........++.+.|+...++..............   ..+...+....+.+ .+..++.++.++. +++
T Consensus       145 ~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~v  220 (355)
T d2bbkh_         145 LDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGK-IHQ  220 (355)
T ss_dssp             EECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSE-EEE
T ss_pred             EecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCe-EEE
Confidence            75433211  11112334445556666666555444322222111   11223345567776 6777888888887 999


Q ss_pred             EecCCCCCce-EEEecCC----------CCeeEEEeccCCCCeEEEEeCC----------CcEEEEEecCCCCCCCCCCC
Q 040307          239 LDIRFPTNPV-VVLSKHE----------GSVNGISWAPLYGRRLCSVADD----------SRALIWEVVGPGYRSGNGGP  297 (339)
Q Consensus       239 ~d~~~~~~~~-~~~~~~~----------~~v~~~~~~p~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~  297 (339)
                      |++....... .....+.          .....++++|++. .++....+          ..|.+||..+.+        
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--------  291 (355)
T d2bbkh_         221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGE--------  291 (355)
T ss_dssp             EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCC--------
T ss_pred             EecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC-eEEEEeccCCceeecCCCCeEEEEeCCCCc--------
Confidence            9998643211 1111111          2335688999984 55554432          368999998877        


Q ss_pred             CCcccceeeecccceeEEEEecCCCCc-eE-EEecCCeEEEEeC
Q 040307          298 SGDVEPELCYQSMAEINVVRWSPLELD-WI-AIAFVNKLQLLKV  339 (339)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~p~~~~-l~-~~~~d~~v~~w~v  339 (339)
                           ......+...+.+++|+|||+. ++ +++.|+.|++|++
T Consensus       292 -----~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         292 -----RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             -----EEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             -----EEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence                 4444455667899999999985 33 4567999999985

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=6.4e-17  Score=133.79  Aligned_cols=250  Identities=7%  Similarity=-0.052  Sum_probs=161.0

Q ss_pred             CCceeeeeec--cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEee-----cCCCCceEEEE
Q 040307            7 KKPGVHTYMA--QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIF-----DHPYTPTNIAF   79 (339)
Q Consensus         7 ~~~~~~~~~~--~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----~~~~~v~~l~~   79 (339)
                      +++.+.++..  ...+.+++|+||   ++++++++.   .++.|.+|++...  +...  .+..     .+...+..++|
T Consensus        27 t~~~~~t~~~~~~~~p~~l~~spD---G~~l~v~~~---~~~~v~~~d~~t~--~~~~--~~~~~~~~~~~~~~~~~v~~   96 (346)
T d1jmxb_          27 SDTVYKSCVMPDKFGPGTAMMAPD---NRTAYVLNN---HYGDIYGIDLDTC--KNTF--HANLSSVPGEVGRSMYSFAI   96 (346)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTT---SSEEEEEET---TTTEEEEEETTTT--EEEE--EEESCCSTTEEEECSSCEEE
T ss_pred             CCCEEEEEEcCCCCCcceEEECCC---CCEEEEEEC---CCCcEEEEeCccC--eeee--eecccccccccCCceEEEEE
Confidence            4566666653  457889999999   988755442   6899999877643  2222  1111     11234678999


Q ss_pred             cCCCCCCCCCeEEEeC-------------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307           80 FPSEETLNPDIVATSG-------------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD  145 (339)
Q Consensus        80 ~~~~~~~~~~~la~~~-------------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  145 (339)
                      +||+     +.+++++             + .+.+|+..+++  ....+..+..   ...+..+.+++ ++..+++   +
T Consensus        97 s~DG-----~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~---~  162 (346)
T d1jmxb_          97 SPDG-----KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL--EAKPVRTFPM---PRQVYLMRAAD-DGSLYVA---G  162 (346)
T ss_dssp             CTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG--GBCCSEEEEC---CSSCCCEEECT-TSCEEEE---S
T ss_pred             ecCC-----CEEEEEecCCcceeeeeccCcceEEEEecccce--eeeEEEeeec---cCceEEEEecC-CCEEEEe---C
Confidence            9999     6665542             2 57778877765  2222211110   03455566664 6655554   2


Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec---------------------------CCcEEEEEeCCCcEEEEECCCCc
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG---------------------------GFNVFASVSGDCSVRVFDLRDKE  198 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~---------------------------~~~~l~~~~~d~~i~i~d~~~~~  198 (339)
                      +.+.+|++.+++.+..+..+.. ...+.++                           ....++++..+..+.+||+.+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         163 PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence            5688999988887776643321 1222222                           12223344455678889998887


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS  278 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  278 (339)
                      ........  +...+..+.++| ++.+++....+ . +.+||... .+.+..+. +...+.+++|+||| ++|++++.|+
T Consensus       242 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~-~-v~v~d~~~-~~~~~~~~-~~~~~~~va~s~DG-~~l~v~~~d~  313 (346)
T d1jmxb_         242 THTQEFAD--LTELYFTGLRSP-KDPNQIYGVLN-R-LAKYDLKQ-RKLIKAAN-LDHTYYCVAFDKKG-DKLYLGGTFN  313 (346)
T ss_dssp             EEEEEEEE--CSSCEEEEEECS-SCTTEEEEEES-E-EEEEETTT-TEEEEEEE-CSSCCCEEEECSSS-SCEEEESBSS
T ss_pred             eEEEEeec--ccceeEEEEEeC-CCCEEEEecCC-e-EEEEECCC-CcEEEEEc-CCCCEEEEEEcCCC-CEEEEEeCCC
Confidence            55554444  556788899998 66666665544 4 99999987 55555554 45679999999999 6999999999


Q ss_pred             cEEEEEecCCC
Q 040307          279 RALIWEVVGPG  289 (339)
Q Consensus       279 ~v~iwd~~~~~  289 (339)
                      .|++||+.+.+
T Consensus       314 ~v~v~D~~t~~  324 (346)
T d1jmxb_         314 DLAVFNPDTLE  324 (346)
T ss_dssp             EEEEEETTTTE
T ss_pred             cEEEEECccCC
Confidence            99999999877

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=1.1e-14  Score=121.85  Aligned_cols=272  Identities=10%  Similarity=-0.093  Sum_probs=166.8

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeeec------cccCCeEEEEecCCCCCcccceeeEeecCCC-------C
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFL------EDYSNKIELVNFNPETSDFSADNRLIFDHPY-------T   73 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-------~   73 (339)
                      +++.+.++.... ...++|+||   |++|+++...      ...++.|.+||...  .+...  .+ ..+..       .
T Consensus        56 tg~~~~~~~~~~-~~~~a~SpD---G~~l~va~~~~~~~~~~~~~~~v~v~D~~t--~~~~~--~~-~~~~~~~~~~~~~  126 (373)
T d2madh_          56 SGSILGHVNGGF-LPNPVAAHS---GSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIA--DI-ELPDAPRFDVGPY  126 (373)
T ss_pred             CCCEEEEEeCCC-CccEEEcCC---CCEEEEEeecCCcccccccceEEEEEECCC--CcEEE--EE-ecCCcceeEeccC
Confidence            455555544332 337999999   9999998631      12467899977654  33332  11 11221       2


Q ss_pred             ceEEEEcCCCCCCCCCeEEEe--C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307           74 PTNIAFFPSEETLNPDIVATS--G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV  149 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~--~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~  149 (339)
                      ...+.|++++     +.++..  . + .+.+|+....+  .....         ....++.++|.....+++.+.|+.+.
T Consensus       127 ~~~~~~s~dg-----~~~~v~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~s~~g~~~~v~~~~dg~~~  190 (373)
T d2madh_         127 SWMNANTPNN-----ADLLFFQFAAGPAVGLVVQGGSS--DDQLL---------SSPTCYHIHPGAPSTFYLLCAQGGLA  190 (373)
T ss_pred             CCcEEEEeCC-----CcEEEEEEcCCCceEEeeccCCe--EEEEe---------ccceeEEEecCCCcEEEEEcCCCeEE
Confidence            3567888888     443332  2 2 78888877664  22222         34557889983344667888999999


Q ss_pred             EEECCCCeeeeeeeccC------CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---------CCCCCeE
Q 040307          150 IWDIDREILETQLVAHD------REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP---------VQDCPLL  214 (339)
Q Consensus       150 i~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~v~  214 (339)
                      +|+...++.......+.      .....+.+.++..++..+.++.+.+|+..............         .......
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (373)
T d2madh_         191 KTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcce
Confidence            99998887665543221      12233444555566777788999999988765322211100         0112233


Q ss_pred             EEEEecCCCCe----------EEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCC-eEEEEeCCCcEEEE
Q 040307          215 RLEWNKADPRF----------MATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGR-RLCSVADDSRALIW  283 (339)
Q Consensus       215 ~~~~~p~~~~~----------l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~iw  283 (339)
                      .++++| ++..          ++....++. +.+||... .+.+..+. +...+..++|+|||.. ++++++.|+.|++|
T Consensus       271 ~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~  346 (373)
T d2madh_         271 QVAYLK-SSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLV-GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             eeEEec-CCCeEEEecCCCceEEeecCCCe-EEEEECCC-CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEE
Confidence            445554 3333          334444555 89999987 55566554 5678899999999943 35688899999999


Q ss_pred             EecCCCCCCCCCCCCCcccce-eeecccceeEEEEecC
Q 040307          284 EVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSP  320 (339)
Q Consensus       284 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p  320 (339)
                      |+.+++             .+ .+..+......++..+
T Consensus       347 D~~tg~-------------~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         347 DAGAGD-------------QDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             ECCCCC-------------EEEEECCCCCCCcEEEEec
Confidence            999988             33 3334555566665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=9.7e-15  Score=121.17  Aligned_cols=261  Identities=11%  Similarity=-0.004  Sum_probs=152.0

Q ss_pred             CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEee----cCCCCceE
Q 040307            7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIF----DHPYTPTN   76 (339)
Q Consensus         7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~----~~~~~v~~   76 (339)
                      +++.+.+... .....++||||   +++|++++.      .+..++.|.+||..  +.+.........    ........
T Consensus        37 tg~~~~~~~~-g~~~~~a~SpD---g~~l~v~~~~~~~~~~g~~d~~v~v~D~~--t~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d2bbkh_          37 AGRVIGMIDG-GFLPNPVVADD---GSFIAHASTVFSRIARGERTDYVEVFDPV--TLLPTADIELPDAPRFLVGTYPWM  110 (355)
T ss_dssp             TTEEEEEEEE-CSSCEEEECTT---SSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGG
T ss_pred             CCcEEEEEEC-CCCCceEEcCC---CCEEEEEeCCCccccccCCCCEEEEEECC--CCCEEEEEecCCcceeecCCCCce
Confidence            3444444433 33447999999   998877542      11247899996654  344333111111    12234577


Q ss_pred             EEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEEeecCCCcc--CCCCEEEEEEcCCCCCEEEEE-eCCCeEE
Q 040307           77 IAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSLLNSNKTSE--FSSAITSFDWAGFDTRRVATC-SVDTTCV  149 (339)
Q Consensus        77 l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~-~~d~~v~  149 (339)
                      ++|+|++     +.++.+.   + .+.+|+..+++  ....+..+....  .......+.+++ ++..++.. ..++.+.
T Consensus       111 ~~~s~dg-----~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         111 TSLTPDG-----KTLLFYQFSPAPAVGVVDLEGKA--FKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             EEECTTS-----SEEEEEECSSSCEEEEEETTTTE--EEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECCSSSCCE
T ss_pred             EEEecCC-----CeeEEecCCCCceeeeeecCCCc--EeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEecCCCeEE
Confidence            8999999     6555542   3 89999998886  555554432000  001112233443 33333222 2223333


Q ss_pred             EEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCC--------CCCCCeEEEEEe
Q 040307          150 IWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENP--------VQDCPLLRLEWN  219 (339)
Q Consensus       150 i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~--------~~~~~v~~~~~~  219 (339)
                      +++.....     ..+...+....+. ++..++.++.++.+++|++..+...... ....        ........++++
T Consensus       183 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  257 (355)
T d2bbkh_         183 ITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH  257 (355)
T ss_dssp             EEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred             EEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe
Confidence            33332221     1233344555666 7788889999999999999887632211 1100        001123457888


Q ss_pred             cCCCCeEEEEeeCC---------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCC-eEEEEeCCCcEEEEEecCCC
Q 040307          220 KADPRFMATVGMDS---------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGR-RLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       220 p~~~~~l~~~~~d~---------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~iwd~~~~~  289 (339)
                      | ++..++....++         ..|.+||..+ .+.+..+.. ...+.+++|+|+|.. ++++++.|+.|++||+++++
T Consensus       258 ~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         258 R-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             T-TTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             C-CCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            7 777776655443         1399999987 556666654 456899999999853 45667789999999999988

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=2.5e-14  Score=119.60  Aligned_cols=282  Identities=7%  Similarity=-0.083  Sum_probs=174.2

Q ss_pred             cCCeeEEEeeecCCcccE--EEE-eeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           17 QWPISTVAWSVRHDRKSR--LAV-GSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~--la~-g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..+...++..++   ++.  ++. ..    .++...+|-++..+.+...  .. ..+.  ...++|+|++     +.|+.
T Consensus        19 ~g~~~~~a~~~~---~~~~~v~~~~~----~~g~~~~~~~d~~~~~~~~--~~-~~~~--~~~~a~spDg-----~~i~~   81 (368)
T d1mdah_          19 DGSSCDHGPGAI---SRRSHITLPAY----FAGTTENWVSCAGCGVTLG--HS-LGAF--LSLAVAGHSG-----SDFAL   81 (368)
T ss_dssp             CCCCBCCCCCCC---TTEEEEEECTT----TCSSEEEEEEETTTTEEEE--EE-EECT--TCEEEECTTS-----SCEEE
T ss_pred             CCCccccccCCC---CcceeEEeecc----CCCcceEEEEeCCCCcEEE--EE-eCCC--CCcceECCCC-----CEEEE
Confidence            455666677777   654  332 33    4677777768877777665  33 2222  3368999999     66665


Q ss_pred             eC-----------C-cEEEEeecCCcceeEEEeecCCCccC--CCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCee
Q 040307           94 SG-----------D-SLRLWEIHDDRTELKSLLNSNKTSEF--SSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREIL  158 (339)
Q Consensus        94 ~~-----------~-~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~  158 (339)
                      .+           + .|.+||..+.+  ....+..+.....  ......++|+| |+++|+++. .++.+.+||+.+++.
T Consensus        82 ~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~  158 (368)
T d1mdah_          82 ASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EcccCccccccccCCeEEEEECCCCc--EeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcE
Confidence            32           2 69999999887  5555544321110  01233689998 999888776 579999999999998


Q ss_pred             eeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307          159 ETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMATVGMDSNK  235 (339)
Q Consensus       159 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d~~~  235 (339)
                      ...+..+....  +...+...++..+.||.+.++++............   ..+...+....+.+ ++..+.  ...+. 
T Consensus       159 ~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~-  232 (368)
T d1mdah_         159 DQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVW--AVASS-  232 (368)
T ss_dssp             EEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEE--CBSSC-
T ss_pred             eEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEE--ecCCC-
Confidence            88776544332  11124567777888999999998776543322111   11223444566665 554443  33444 


Q ss_pred             EEEEecCCCCCceEEE--ec----------CCCCeeEEEeccCCCCeEEEEe-CC--------CcEEEEEecCCCCCCCC
Q 040307          236 VVVLDIRFPTNPVVVL--SK----------HEGSVNGISWAPLYGRRLCSVA-DD--------SRALIWEVVGPGYRSGN  294 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~--~~----------~~~~v~~~~~~p~~~~~l~~~~-~d--------g~v~iwd~~~~~~~~~~  294 (339)
                      +++++..... .....  ..          .......++++|++. .++... .+        ..|.+||..+.+     
T Consensus       233 v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~-~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-----  305 (368)
T d1mdah_         233 ILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQ-----  305 (368)
T ss_dssp             CEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCC-----
T ss_pred             EEEEeecCCc-eEEEeecccccceeeeeeecCCCceeEEEcCCCC-EEEEEecCCCceeecCCceEEEEECCCCc-----
Confidence            6667665422 11111  00          011234588899985 444432 22        358899998887     


Q ss_pred             CCCCCcccceeeecccceeEEEEecCCCCc-eE-EEecCCeEEEEeC
Q 040307          295 GGPSGDVEPELCYQSMAEINVVRWSPLELD-WI-AIAFVNKLQLLKV  339 (339)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-l~-~~~~d~~v~~w~v  339 (339)
                              ......+...+.+++|+|||+. ++ +...|+.|++|+.
T Consensus       306 --------~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         306 --------TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             --------EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             --------EeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence                    4444455677999999999975 33 4567899999984

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=4.2e-13  Score=115.78  Aligned_cols=282  Identities=10%  Similarity=0.043  Sum_probs=153.5

Q ss_pred             cCCeeEEEeeecCCcccEEEEeee-----ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSF-----LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV   91 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~-----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l   91 (339)
                      ...|.+++||||   +++||.++.     ....++.+.||++.  ++....    ...+...+..+.|||||     +.+
T Consensus        61 ~~~i~~~~~SpD---g~~i~~~~~~~~~~r~s~~~~~~l~d~~--~~~~~~----l~~~~~~~~~~~~SPDG-----~~i  126 (470)
T d2bgra1          61 GHSINDYSISPD---GQFILLEYNYVKQWRHSYTASYDIYDLN--KRQLIT----EERIPNNTQWVTWSPVG-----HKL  126 (470)
T ss_dssp             SSCCCEEEECTT---SSEEEEEEEEEECSSSCEEEEEEEEETT--TTEECC----SSCCCTTEEEEEECSST-----TCE
T ss_pred             cCccceeEECCC---CCEEEEEECCcceeeeccCceEEEEECC--CCcccc----cccCCccccccccccCc-----cee
Confidence            357999999999   999998862     00124677786655  444443    25788889999999999     788


Q ss_pred             EEeCC-cEEEEeecCCcceeEEEeecCCC-------------ccCCCCEEEEEEcCCCCCEEEEEeCCCe-EEEEE----
Q 040307           92 ATSGD-SLRLWEIHDDRTELKSLLNSNKT-------------SEFSSAITSFDWAGFDTRRVATCSVDTT-CVIWD----  152 (339)
Q Consensus        92 a~~~~-~i~iw~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~l~~~~~d~~-v~i~d----  152 (339)
                      |...+ .+++|+..+++  .......+..             +...+....+.|+| +++.|+....|.. +..|.    
T Consensus       127 a~~~~~~l~~~~~~~g~--~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~~~~  203 (470)
T d2bgra1         127 AYVWNNDIYVKIEPNLP--SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFY  203 (470)
T ss_dssp             EEEETTEEEEESSTTSC--CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEEC
T ss_pred             eEeecccceEEECCCCc--eeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceEEEEee
Confidence            88777 99999998876  2222211110             00113456688999 9999999765432 33332    


Q ss_pred             -------------------------------CCCCeeeeeee-----------ccCCceeEEEec-CCcEEEEE-eCCC-
Q 040307          153 -------------------------------IDREILETQLV-----------AHDREVYDISWG-GFNVFASV-SGDC-  187 (339)
Q Consensus       153 -------------------------------~~~~~~~~~~~-----------~~~~~v~~~~~~-~~~~l~~~-~~d~-  187 (339)
                                                     +..++......           .....+..+.|. ++.+++.. ...+ 
T Consensus       204 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~  283 (470)
T d2bgra1         204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN  283 (470)
T ss_dssp             CSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred             ccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC
Confidence                                           21111100000           011224556676 45444432 2222 


Q ss_pred             --cEEE--EECCCCcceeeE-----EeCCC---CCCCeEEEEEecCCCC-eEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307          188 --SVRV--FDLRDKERSTII-----YENPV---QDCPLLRLEWNKADPR-FMATVGMDSNKVVVLDIRFPTNPVVVLSKH  254 (339)
Q Consensus       188 --~i~i--~d~~~~~~~~~~-----~~~~~---~~~~v~~~~~~p~~~~-~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~  254 (339)
                        .+.+  +|..++......     .....   .........|.+.... +++.+..++. .+||.+...+.....+..+
T Consensus       284 ~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~-~~ly~~~~~g~~~~~lt~g  362 (470)
T d2bgra1         284 YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY-RHICYFQIDKKDCTFITKG  362 (470)
T ss_dssp             EEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC-EEEEEEETTCSCCEESCCS
T ss_pred             ceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcC-ceeEEEeccCCceeeeccC
Confidence              2233  344444321111     11000   0001112344442333 4555666665 5555444334445566555


Q ss_pred             CCCeeEEEeccCCCCeEEEEeCCC----cEEEEEecCCCCCCCCCCCCCccccee----eecccceeEEEEecCCCCceE
Q 040307          255 EGSVNGISWAPLYGRRLCSVADDS----RALIWEVVGPGYRSGNGGPSGDVEPEL----CYQSMAEINVVRWSPLELDWI  326 (339)
Q Consensus       255 ~~~v~~~~~~p~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~p~~~~l~  326 (339)
                      ...|..+ +++++..+++++..++    .-.||.+....          ...+..    ...|...+.+++|||||++++
T Consensus       363 ~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g----------~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~  431 (470)
T d2bgra1         363 TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSD----------YTKVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (470)
T ss_dssp             SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTC----------TTCEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             CeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCC----------CCceeEecccccCCCCCEEEEEECCCCCEEE
Confidence            6677776 4445534555555432    33677776443          001111    225777899999999999877


Q ss_pred             E
Q 040307          327 A  327 (339)
Q Consensus       327 ~  327 (339)
                      .
T Consensus       432 ~  432 (470)
T d2bgra1         432 L  432 (470)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.53  E-value=4.2e-11  Score=99.34  Aligned_cols=281  Identities=10%  Similarity=0.015  Sum_probs=163.2

Q ss_pred             EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-CcEEEEeecCCcceeEE
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-DSLRLWEIHDDRTELKS  112 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~~i~iw~~~~~~~~~~~  112 (339)
                      .|.+|++.  ..+.|..+.++.++..+.............+..|+|+|++     ++|.+.. +.+..|.+..... .. 
T Consensus         4 ~l~vGtyt--~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~-----~~ly~~~~~~~~~~~i~~~~~-~~-   74 (365)
T d1jofa_           4 HLMIGTWT--PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-----KNIYGAAMKKWSSFAVKSPTE-IV-   74 (365)
T ss_dssp             EEEEEESS--SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-----SEEEEEEBTEEEEEEEEETTE-EE-
T ss_pred             EEEEEeec--CCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCC-----CEEEEEeCCcEEEEEEeCCCC-eE-
Confidence            57888741  2567999999999888765334334556677889999999     6655544 5777777765431 11 


Q ss_pred             EeecCCCccCCCCEEEEEEcCCCCCE--EEEEe-CCCeEEEEECCCC-------------ee---eeee-eccCCceeEE
Q 040307          113 LLNSNKTSEFSSAITSFDWAGFDTRR--VATCS-VDTTCVIWDIDRE-------------IL---ETQL-VAHDREVYDI  172 (339)
Q Consensus       113 ~~~~~~~~~~~~~i~~~~~~~~~~~~--l~~~~-~d~~v~i~d~~~~-------------~~---~~~~-~~~~~~v~~~  172 (339)
                      ....+...   .....+.+++ +++.  ++++. ..+.|..+.+...             +.   .... ......+.++
T Consensus        75 ~~~~~~~~---~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v  150 (365)
T d1jofa_          75 HEASHPIG---GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGM  150 (365)
T ss_dssp             EEEEEECC---SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEE
T ss_pred             EEeeecCC---CCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEE
Confidence            11111100   2334566776 6663  33322 2345554433211             10   1100 1122346899


Q ss_pred             Eec-CCcEEEEEeC-CCcEEEEECCCCcceeeE--EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-
Q 040307          173 SWG-GFNVFASVSG-DCSVRVFDLRDKERSTII--YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-  247 (339)
Q Consensus       173 ~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-  247 (339)
                      .|+ ++++++++.. ...|.+|+..........  ............++|+| +++++++.......|.+|++...... 
T Consensus       151 ~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~  229 (365)
T d1jofa_         151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecCCCceE
Confidence            999 7887777754 457888876654432222  11222345789999998 88888777766656999998763321 


Q ss_pred             eEEEe-----------------cCCCCeeEEEeccCCCCeEEEEe-CCC-----cEEEEEecCCCCCCCCCCCCCcccce
Q 040307          248 VVVLS-----------------KHEGSVNGISWAPLYGRRLCSVA-DDS-----RALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       248 ~~~~~-----------------~~~~~v~~~~~~p~~~~~l~~~~-~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      +....                 .+......+.++|+|. +|+++. .+.     .|..|++....          .+...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~-~lyvsnr~~~~~~~~~i~~~~~~~~g----------~~~~~  298 (365)
T d1jofa_         230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDCG----------SIEKQ  298 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTTS----------CEEEE
T ss_pred             EEEeeeeccccccccccccccccccCCccceEECCCCC-EEEEEcccCCCccceEEEEEEecCCC----------ceeeE
Confidence            11111                 0112356789999994 666553 222     37777776644          11111


Q ss_pred             ee----ecccceeEEEEecC-CCCceEEEe-cCCeEEEEeC
Q 040307          305 LC----YQSMAEINVVRWSP-LELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       305 ~~----~~~~~~i~~~~~~p-~~~~l~~~~-~d~~v~~w~v  339 (339)
                      ..    .........++++| +|++|+++. .++.|.+|++
T Consensus       299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            11    12334567899998 788777664 7899999974

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.2e-10  Score=92.12  Aligned_cols=234  Identities=12%  Similarity=0.075  Sum_probs=138.2

Q ss_pred             eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C----cEEEEeecCCcceeEEEeecCCCcc
Q 040307           47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D----SLRLWEIHDDRTELKSLLNSNKTSE  121 (339)
Q Consensus        47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~----~i~iw~~~~~~~~~~~~~~~~~~~~  121 (339)
                      .|.|  .+.++.....    ...+...+...+|||||     +.||-.. +    .+.+.+.....   ...+..+.   
T Consensus        20 ~l~i--~d~dG~~~~~----l~~~~~~~~sP~wSPDG-----k~IAf~~~~~~~~~~~~~~~~~~~---~~~~~~~~---   82 (269)
T d2hqsa1          20 ELRV--SDYDGYNQFV----VHRSPQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGA---VRQVASFP---   82 (269)
T ss_dssp             EEEE--EETTSCSCEE----EEEESSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEETTTCC---EEEEECCS---
T ss_pred             EEEE--EcCCCCCcEE----EecCCCceeeeEECCCC-----CEEEEEEeeccCcceeeeecccCc---eeEEeeee---
Confidence            4555  5555544443    24556778899999999     7777543 2    56666666554   22333333   


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeC-CCe--EEEEECCCCeeeeeeeccCCceeEEEec-C-CcEEEEEeCCCc--EEEEEC
Q 040307          122 FSSAITSFDWAGFDTRRVATCSV-DTT--CVIWDIDREILETQLVAHDREVYDISWG-G-FNVFASVSGDCS--VRVFDL  194 (339)
Q Consensus       122 ~~~~i~~~~~~~~~~~~l~~~~~-d~~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~--i~i~d~  194 (339)
                        .......|+| ++..++.... ++.  +..+........... ..........++ + ...+++...++.  |.+.++
T Consensus        83 --~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~  158 (269)
T d2hqsa1          83 --RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  158 (269)
T ss_dssp             --SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             --cccccceecC-CCCeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeec
Confidence              6778899998 8887776554 333  333333333323222 233334444555 3 445555555654  445555


Q ss_pred             CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307          195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV  274 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  274 (339)
                      .........  .  .........|+| +++.++..+.++....+|........ ..+..+........|+|||. .|+..
T Consensus       159 ~~~~~~~~~--~--~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~-~i~f~  231 (269)
T d2hqsa1         159 NGGAPQRIT--W--EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGT-MVIYS  231 (269)
T ss_dssp             TSSCCEECC--C--SSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSS-EEEEE
T ss_pred             ccccceeee--c--cccccccccccc-ccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECCCCC-EEEEE
Confidence            554432221  1  335677889998 77777776666543555544442333 34444566778899999995 65543


Q ss_pred             e-C--CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307          275 A-D--DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL  321 (339)
Q Consensus       275 ~-~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  321 (339)
                      + .  ...|.++++....             +..+....+.+...+|||-
T Consensus       232 s~~~~~~~l~~~~~dg~~-------------~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         232 SSQGMGSVLNLVSTDGRF-------------KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEETTEEEEEEEETTSCC-------------EEECCCSSSEEEEEEECCC
T ss_pred             EcCCCCcEEEEEECCCCC-------------EEEEeCCCCcEEeEEeCCC
Confidence            3 2  3467888887765             4455556778889999993

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=4.3e-12  Score=105.70  Aligned_cols=243  Identities=10%  Similarity=-0.075  Sum_probs=144.1

Q ss_pred             eEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEe----ecCCCCceEEEEcCCCCCCCCCe
Q 040307           21 STVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLI----FDHPYTPTNIAFFPSEETLNPDI   90 (339)
Q Consensus        21 ~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~~~~   90 (339)
                      ..++|+||   ++.|++++.      .+..++.|.+||..  +.+........    .........++|+||+     ++
T Consensus        68 ~~~a~spD---g~~i~~~~~~~~~~~~g~~d~~v~v~D~~--t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-----k~  137 (368)
T d1mdah_          68 SLAVAGHS---GSDFALASTSFARSAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASS-----AC  137 (368)
T ss_dssp             CEEEECTT---SSCEEEEEEEETTTTSSSEEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTS-----SC
T ss_pred             CcceECCC---CCEEEEEcccCccccccccCCeEEEEECC--CCcEeeeecCCccceecccCCccceEECCCC-----CE
Confidence            36899999   998888663      12347889996544  44443311110    0112335679999999     55


Q ss_pred             EEEeC--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-----
Q 040307           91 VATSG--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-----  162 (339)
Q Consensus        91 la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----  162 (339)
                      |+.+.  + .+.+||+.+.+  ....+..+.     ...    +.|.....++..+.||.+.++++.........     
T Consensus       138 l~va~~~~~~v~~~d~~~~~--~~~~~~~~~-----~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGAS--DDQLTKSAS-----CFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTE--EEEEEECSS-----CCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             EEEEeCCCCeEEEEECCCCc--EeEEeeccC-----cce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            55543  3 99999999987  555555433     111    11224456777788888888887655422221     


Q ss_pred             -eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC---------CCCCeEEEEEecCCCCeEEEEee
Q 040307          163 -VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV---------QDCPLLRLEWNKADPRFMATVGM  231 (339)
Q Consensus       163 -~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~~l~~~~~  231 (339)
                       ..+...+..+.+. ++..+.+  ..+.+.+++...............         .......++++| ++..+++...
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~  283 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTV  283 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEE
T ss_pred             ccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEec
Confidence             2233344455666 4444333  345666777665542221110000         001223477887 5555554433


Q ss_pred             CC--------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCC-eEEEEeCCCcEEEEEecCCC
Q 040307          232 DS--------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGR-RLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       232 d~--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++        ..|.+||..+ .+.+..+.. ...+.+++|+|||+. +++++..|+.|++||..+++
T Consensus       284 ~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         284 EHSRSCLAAAENTSSVTASV-GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSS-CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCceeecCCceEEEEECCC-CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            22        1388999987 555655553 457889999999853 45677788999999999887

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=2.2e-11  Score=104.75  Aligned_cols=150  Identities=9%  Similarity=0.053  Sum_probs=102.9

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--   96 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--   96 (339)
                      .-..+.|.++   ++++..      .++.+.+|+.................|...|.++.||||+     +.|+.+++  
T Consensus        18 ~~~~~~W~~d---~~~~~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg-----~~i~~~~~~~   83 (470)
T d2bgra1          18 KLYSLRWISD---HEYLYK------QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-----QFILLEYNYV   83 (470)
T ss_dssp             CCCCCEECSS---SEEEEE------SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS-----SEEEEEEEEE
T ss_pred             cccCCEeCCC---CEEEEE------cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC-----CEEEEEECCc
Confidence            3457889999   887653      3678999776654433221101113456789999999999     77776642  


Q ss_pred             ---------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec---
Q 040307           97 ---------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA---  164 (339)
Q Consensus        97 ---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---  164 (339)
                               .+.|||+.+++   ...+..+.     ..+....||| +++.||.. .++.+++|+..+++..+....   
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~---~~~l~~~~-----~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQ---LITEERIP-----NNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTE---ECCSSCCC-----TTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             ceeeeccCceEEEEECCCCc---ccccccCC-----cccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCC
Confidence                     67899999875   34455555     7899999999 99999986 468999999988875543321   


Q ss_pred             ---------------cCCceeEEEec-CCcEEEEEeCCCc-EEEE
Q 040307          165 ---------------HDREVYDISWG-GFNVFASVSGDCS-VRVF  192 (339)
Q Consensus       165 ---------------~~~~v~~~~~~-~~~~l~~~~~d~~-i~i~  192 (339)
                                     ..+....+.|+ +++.|+....|.. +..|
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence                           12234567899 7899988876533 4433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.42  E-value=2.3e-14  Score=119.86  Aligned_cols=275  Identities=8%  Similarity=-0.055  Sum_probs=164.6

Q ss_pred             eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cE
Q 040307           20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SL   98 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i   98 (339)
                      .....++||   |++|.+...   .++.|.++|++  +.+...  .+...+...+..++|+|+++.   .+++..++ .+
T Consensus        74 ~s~t~gtpD---Gr~lfV~d~---~~~rVavIDl~--t~k~~~--ii~iP~g~gphgi~~spdg~t---~YV~~~~~~~v  140 (441)
T d1qnia2          74 ISMTDGRYD---GKYLFINDK---ANTRVARIRLD--IMKTDK--ITHIPNVQAIHGLRLQKVPKT---NYVFCNAEFVI  140 (441)
T ss_dssp             EEEETTEEE---EEEEEEEET---TTTEEEEEETT--TTEEEE--EEECTTCCCEEEEEECCSSBC---CEEEEEECSCE
T ss_pred             cceecccCC---CCEEEEEcC---CCCEEEEEECC--CCcEee--EEecCCCCCccceEEeccCCE---EEEEeccCCcc
Confidence            445567899   999988764   68899995554  444443  334567788999999999941   24444433 33


Q ss_pred             ------------------EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-eEEEEECCCCeee
Q 040307           99 ------------------RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-TCVIWDIDREILE  159 (339)
Q Consensus        99 ------------------~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~  159 (339)
                                        ..+|..+.+  ....+...      .....+.|+| +++++++++.+. .+..++..+.+..
T Consensus       141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~--v~~qI~v~------~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         141 PQPNDGTDFSLDNSYTMFTAIDAETMD--VAWQVIVD------GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             ESSCSSSCCCGGGEEEEEEEEETTTCS--EEEEEEES------SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             cccCcccccccccccceEEeecCccce--eeEEEecC------CCccceEECC-CCCEEEEEecCCCceEEEeccCcceE
Confidence                              335555554  33333332      3567899998 899888877653 3333343333322


Q ss_pred             eeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE-EeeCCCeEE
Q 040307          160 TQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT-VGMDSNKVV  237 (339)
Q Consensus       160 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d~~~i~  237 (339)
                      ..+.... ....+.+. +++++.. +.++.+.+++....+....+...    .....+.++| +|+++++ +..++. +.
T Consensus       212 d~i~v~n-~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvg----ksPhGv~vSP-DGkyl~~~~~~~~t-vs  283 (441)
T d1qnia2         212 DWVVVFN-VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVP----KNPHGLNTSP-DGKYFIANGKLSPT-VS  283 (441)
T ss_dssp             CEEEEEE-HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCB----SSCCCEEECT-TSCEEEEECTTSSB-EE
T ss_pred             EEEEeCC-ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCC----CCccCceECC-CCCEEEEeCCcCCc-EE
Confidence            2221111 11223344 5665544 44677777776665544333322    3457899999 7887655 555666 99


Q ss_pred             EEecCCCCC-------ceEEEecC---CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce---
Q 040307          238 VLDIRFPTN-------PVVVLSKH---EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE---  304 (339)
Q Consensus       238 i~d~~~~~~-------~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---  304 (339)
                      +||+.+..+       +...+.++   .-.....+|+++| +.+.+...|..|..|++..... .-.+   ....++   
T Consensus       284 v~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~-~~~~---~~~~~v~~~  358 (441)
T d1qnia2         284 VIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIK-HYNG---DRVNYIRQK  358 (441)
T ss_dssp             EEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHH-HHTT---CCCCCEEEE
T ss_pred             EEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhh-hhcc---CCCceeEec
Confidence            999865221       11111111   1234556899998 6888888999999999863210 0000   001111   


Q ss_pred             ----eeecccceeEEEEecCCCCceEEEe
Q 040307          305 ----LCYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       305 ----~~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                          -..+|...+.+.+++|+|++|++++
T Consensus       359 ~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         359 LDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccccCCCCCccccccccCCCCcEEEecC
Confidence                1247888888899999999999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.40  E-value=3.6e-10  Score=91.13  Aligned_cols=241  Identities=10%  Similarity=0.049  Sum_probs=154.8

Q ss_pred             CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307            8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN   87 (339)
Q Consensus         8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~   87 (339)
                      .+.+.++.-...+..++++|+   |+++++..    .+++|..  ++.++....     .......+.+++|.+++    
T Consensus        18 ~~v~~~~p~~~~~e~iAv~pd---G~l~vt~~----~~~~I~~--i~p~g~~~~-----~~~~~~~~~gla~~~dG----   79 (302)
T d2p4oa1          18 AKIITSFPVNTFLENLASAPD---GTIFVTNH----EVGEIVS--ITPDGNQQI-----HATVEGKVSGLAFTSNG----   79 (302)
T ss_dssp             EEEEEEECTTCCEEEEEECTT---SCEEEEET----TTTEEEE--ECTTCCEEE-----EEECSSEEEEEEECTTS----
T ss_pred             ccEEEECCCCCCcCCEEECCC---CCEEEEeC----CCCEEEE--EeCCCCEEE-----EEcCCCCcceEEEcCCC----
Confidence            345566655556889999999   99888877    6887766  666554322     24566789999999999    


Q ss_pred             CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--
Q 040307           88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--  163 (339)
Q Consensus        88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--  163 (339)
                       +++++.. + .+..++................    ....+.+.+.+ +++++++-+.++.+..+|...+.......  
T Consensus        80 -~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~  153 (302)
T d2p4oa1          80 -DLVATGWNADSIPVVSLVKSDGTVETLLTLPD----AIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHP  153 (302)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTSCEEEEEECTT----CSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred             -CeEEEecCCceEEEEEecccccceeeccccCC----ccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCC
Confidence             8888764 3 7888877654422222111111    15678999997 88888888888999999987765322211  


Q ss_pred             --------ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307          164 --------AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNK  235 (339)
Q Consensus       164 --------~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~  235 (339)
                              ........+.+.++.++++.+..+.|..++............. ........+++.+ +|++.++...++. 
T Consensus       154 ~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~-dG~l~va~~~~~~-  230 (302)
T d2p4oa1         154 MLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDV-EGNLYGATHIYNS-  230 (302)
T ss_dssp             GGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBT-TCCEEEECBTTCC-
T ss_pred             ccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECC-CCCEEEEEcCCCc-
Confidence                    1112345666666667777788889999988765432221110 0123456799997 8887777667777 


Q ss_pred             EEEEecCCCCCceEEEecCCCCeeEEEe---ccCCCCeEEEEeC
Q 040307          236 VVVLDIRFPTNPVVVLSKHEGSVNGISW---APLYGRRLCSVAD  276 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~l~~~~~  276 (339)
                      |..++.......+......-...++++|   ++|+ +.|+.++.
T Consensus       231 V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~-~~Lyvtt~  273 (302)
T d2p4oa1         231 VVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTN  273 (302)
T ss_dssp             EEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEEC
T ss_pred             EEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCC-CEEEEECC
Confidence            8888765311112222223346789999   6677 46655543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=3.7e-09  Score=87.37  Aligned_cols=254  Identities=7%  Similarity=-0.049  Sum_probs=151.3

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEeC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATSG   95 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~~   95 (339)
                      ..++.-|+|+|+   ++.|.++.     .+.+..|.++.++.....   ...........+.++++++    . +++++.
T Consensus        39 ~~~~s~la~s~d---~~~ly~~~-----~~~~~~~~i~~~~~~~~~---~~~~~~~~p~~v~~~~~~~----~~~v~~a~  103 (365)
T d1jofa_          39 DEPISWMTFDHE---RKNIYGAA-----MKKWSSFAVKSPTEIVHE---ASHPIGGHPRANDADTNTR----AIFLLAAK  103 (365)
T ss_dssp             TCCCSEEEECTT---SSEEEEEE-----BTEEEEEEEEETTEEEEE---EEEECCSSGGGGCTTSCCE----EEEEEECS
T ss_pred             CCCCCEEEEcCC---CCEEEEEe-----CCcEEEEEEeCCCCeEEE---eeecCCCCcEEEEECCCCC----EEEEEEec
Confidence            345677999999   99888877     578899888876543332   1123345677889999983    2 344443


Q ss_pred             --C-cEEEEeecCCc-c----------eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeee-
Q 040307           96 --D-SLRLWEIHDDR-T----------ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILE-  159 (339)
Q Consensus        96 --~-~i~iw~~~~~~-~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~-  159 (339)
                        . .+..+.+.... .          .......... ......+.++.|+| +++++++++. ...|.+|+......+ 
T Consensus       104 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~  181 (365)
T d1jofa_         104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCCCEEEEeEccCCCCcceeEeeeecceecCcccCcc-cCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCcee
Confidence              1 56555443211 0          0000010000 00113578999999 9998887764 457888876543211 


Q ss_pred             --eee--eccCCceeEEEec-CCcEE-EEEeCCCcEEEEECCCCcceeeEE--eC--------------CCCCCCeEEEE
Q 040307          160 --TQL--VAHDREVYDISWG-GFNVF-ASVSGDCSVRVFDLRDKERSTIIY--EN--------------PVQDCPLLRLE  217 (339)
Q Consensus       160 --~~~--~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~--~~--------------~~~~~~v~~~~  217 (339)
                        ...  .........+.|+ +++++ ++...+++|.+|++..........  ..              .........+.
T Consensus       182 ~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  261 (365)
T d1jofa_         182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             eccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceE
Confidence              111  1234567899999 67666 445567899999987665322111  00              01112356789


Q ss_pred             EecCCCCeEEEEeeCCC-----eEEEEecCCCCCceEEE-----ecCCCCeeEEEecc-CCCCeEEEE-eCCCcEEEEEe
Q 040307          218 WNKADPRFMATVGMDSN-----KVVVLDIRFPTNPVVVL-----SKHEGSVNGISWAP-LYGRRLCSV-ADDSRALIWEV  285 (339)
Q Consensus       218 ~~p~~~~~l~~~~~d~~-----~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~p-~~~~~l~~~-~~dg~v~iwd~  285 (339)
                      ++| +|++|+++.....     .|..|++...+......     .......+.++++| +| ++|+++ ..++.|.+|++
T Consensus       262 ~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         262 LTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEE
T ss_pred             ECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEE
Confidence            998 8998888754321     27777776543322111     12234567899998 67 566555 57799999998


Q ss_pred             cCCC
Q 040307          286 VGPG  289 (339)
Q Consensus       286 ~~~~  289 (339)
                      +...
T Consensus       340 ~~~~  343 (365)
T d1jofa_         340 KDEF  343 (365)
T ss_dssp             ETTE
T ss_pred             eCCc
Confidence            7654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=4e-10  Score=93.98  Aligned_cols=205  Identities=6%  Similarity=-0.101  Sum_probs=128.0

Q ss_pred             CEEEEEEcCCCCCEEEEE-eCCCeEEEEECCCCeeeeeee-ccCCceeEEEec-CCc--EEEEEeCCC------------
Q 040307          125 AITSFDWAGFDTRRVATC-SVDTTCVIWDIDREILETQLV-AHDREVYDISWG-GFN--VFASVSGDC------------  187 (339)
Q Consensus       125 ~i~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~--~l~~~~~d~------------  187 (339)
                      ........| ||++|++. ..++.|.++|+++.+....+. .+...+..++|+ +++  +++..+.+.            
T Consensus        73 ~~s~t~gtp-DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          73 HISMTDGRY-DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             EEEEETTEE-EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             CcceecccC-CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            344455566 88888665 468899999999998777654 356678999999 566  444444332            


Q ss_pred             -----cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----------------------------
Q 040307          188 -----SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----------------------------  234 (339)
Q Consensus       188 -----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----------------------------  234 (339)
                           .+..+|..+.+....+...    ..+..+.++| +|+++++.+.+..                            
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~----~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVD----GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEES----SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccceEEeecCccceeeEEEecC----CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                 1345787777654444433    3567899998 8888877765421                            


Q ss_pred             ------------eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307          235 ------------KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE  302 (339)
Q Consensus       235 ------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  302 (339)
                                  .+.+++... ...+..+...+ ....+.++|||..+++++..+++|.+||++.... ..+.. .....
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~-~~~~~-~~~~~  302 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD-LFEDK-IELRD  302 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSS-CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH-HTTTS-SCGGG
T ss_pred             cCCCEEEeCCCCcEEEEcccC-CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhh-Hhhcc-CCcce
Confidence                        123333222 34555665543 4688999999964556777899999999976441 00000 00001


Q ss_pred             ce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          303 PE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       303 ~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      .+ ......-.....+|.++|..+.+...|..|..|++
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             EEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            11 11112223456789999865556678999999974

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=3.2e-09  Score=83.47  Aligned_cols=234  Identities=10%  Similarity=-0.014  Sum_probs=144.3

Q ss_pred             CCCCceEEEEcCCCCCCCCCeEEEeC-C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           70 HPYTPTNIAFFPSEETLNPDIVATSG-D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      +......|++.+++     .++++.. .  .+..++..... .......+.      .....+++++ +++++++....+
T Consensus        12 ~~~~P~~vavd~dG-----~i~v~~~~~~~~i~~~~~~~~~-~~~~~~~~~------~~p~gvav~~-~g~i~v~d~~~~   78 (260)
T d1rwia_          12 FRLSPSGVAVDSAG-----NVYVTSEGMYGRVVKLATGSTG-TTVLPFNGL------YQPQGLAVDG-AGTVYVTDFNNR   78 (260)
T ss_dssp             SCCCEEEEEECTTC-----CEEEEECSSSCEEEEEC----C-EEECCCCSC------CSCCCEEECT-TCCEEEEETTTE
T ss_pred             CcCCCCEEEEcCCC-----CEEEEEcCCCCEEEEEcCCCce-EEEeccCCc------cCceEEEEcC-CCCEEEeeeeec
Confidence            33456899999999     7666544 3  56666554432 111112211      3456889997 888877776666


Q ss_pred             eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307          147 TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF  225 (339)
Q Consensus       147 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  225 (339)
                      .+++++..+...+.... ......++++. +++++++-.....+..++............   .......++++| ++++
T Consensus        79 ~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~~~-~g~~  153 (260)
T d1rwia_          79 VVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---GLNDPDGVAVDN-SGNV  153 (260)
T ss_dssp             EEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC---SCCSCCEEEECT-TCCE
T ss_pred             eeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeec---ccCCcceeeecC-CCCE
Confidence            77666655554443332 23456889998 677777666666677777665442222111   123457899998 7887


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307          226 MATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE  304 (339)
Q Consensus       226 l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  304 (339)
                      +++...++. |..+|.....  ...+. ..-.....+++.+++ .++++....+.|..++.....            ...
T Consensus       154 ~v~~~~~~~-i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~------------~~~  217 (260)
T d1rwia_         154 YVTDTDNNR-VVKLEAESNN--QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT------------STV  217 (260)
T ss_dssp             EEEEGGGTE-EEEECTTTCC--EEECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSC------------CEE
T ss_pred             eeecccccc-ccccccccce--eeeeeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCe------------EEE
Confidence            777666666 9999876522  22322 334567899999998 577777777888877655433            111


Q ss_pred             eeecccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307          305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLL  337 (339)
Q Consensus       305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w  337 (339)
                      .....-.....|+++++|..+++-..++.|+.+
T Consensus       218 ~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         218 LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            111223457899999999766665667776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=8e-09  Score=81.40  Aligned_cols=222  Identities=15%  Similarity=0.131  Sum_probs=132.9

Q ss_pred             eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      .....+.+.+||||   |+.||....   ..+...+|..+..+.....    ...+........|+|++     +.++..
T Consensus        36 ~~~~~~~sP~wSPD---Gk~IAf~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg-----~~i~~~  100 (269)
T d2hqsa1          36 RSPQPLMSPAWSPD---GSKLAYVTF---ESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDG-----SKLAFA  100 (269)
T ss_dssp             EESSCEEEEEECTT---SSEEEEEEC---TTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTS-----SEEEEE
T ss_pred             cCCCceeeeEECCC---CCEEEEEEe---eccCcceeeeecccCceeE----EeeeecccccceecCCC-----CeeeEe
Confidence            45677889999999   999998763   3444444446655555443    35677888999999999     566554


Q ss_pred             C---CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeeeeeccCCce
Q 040307           95 G---DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT--TCVIWDIDREILETQLVAHDREV  169 (339)
Q Consensus        95 ~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~v  169 (339)
                      .   +...++............... .     .......+++.....+++...++  .|.+.++..+... .+.......
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~  173 (269)
T d2hqsa1         101 LSKTGSLNLYVMDLASGQIRQVTDG-R-----SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQN  173 (269)
T ss_dssp             ECTTSSCEEEEEETTTCCEEECCCC-S-----SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEE
T ss_pred             eecCCccceeecccccccceeeeec-c-----ccccccccccccccceecccccCCceEeeeecccccce-eeecccccc
Confidence            3   223333332222112222222 2     34445566663334444444555  4556666655433 333455667


Q ss_pred             eEEEec-CCcEEEEEeCC-CcEE--EEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCC
Q 040307          170 YDISWG-GFNVFASVSGD-CSVR--VFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRF  243 (339)
Q Consensus       170 ~~~~~~-~~~~l~~~~~d-~~i~--i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~  243 (339)
                      ....|+ ++..++..+.+ +...  +.|.....  .....   .........|+| +|+.|+..+..+.  .|+++++..
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~---~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLS---STFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECC---CSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccceeEEEeecCCceeeeEeeccccc--ceEee---cCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence            778898 67777666544 4444  44544443  22222   234567889999 8888776555442  478888864


Q ss_pred             CCCceEEEecCCCCeeEEEeccC
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPL  266 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~  266 (339)
                        .....+....+.+...+|||-
T Consensus       248 --~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         248 --RFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             --CCEEECCCSSSEEEEEEECCC
T ss_pred             --CCEEEEeCCCCcEEeEEeCCC
Confidence              345667777778889999984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=4.7e-09  Score=82.47  Aligned_cols=236  Identities=9%  Similarity=0.012  Sum_probs=144.9

Q ss_pred             cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307           17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD   96 (339)
Q Consensus        17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~   96 (339)
                      .-....+++.++   +.+.++...   ..+.+..  ++..+.....   ....-......+++++++     .++++...
T Consensus        13 ~~~P~~vavd~d---G~i~v~~~~---~~~~i~~--~~~~~~~~~~---~~~~~~~~p~gvav~~~g-----~i~v~d~~   76 (260)
T d1rwia_          13 RLSPSGVAVDSA---GNVYVTSEG---MYGRVVK--LATGSTGTTV---LPFNGLYQPQGLAVDGAG-----TVYVTDFN   76 (260)
T ss_dssp             CCCEEEEEECTT---CCEEEEECS---SSCEEEE--EC----CEEE---CCCCSCCSCCCEEECTTC-----CEEEEETT
T ss_pred             cCCCCEEEEcCC---CCEEEEEcC---CCCEEEE--EcCCCceEEE---eccCCccCceEEEEcCCC-----CEEEeeee
Confidence            346789999999   886665441   3566666  3333322221   112223456889999999     88887765


Q ss_pred             --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307           97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW  174 (339)
Q Consensus        97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~  174 (339)
                        .+++++-.+..  ........      ....++++.+ +++++++-..+..+..++...................+++
T Consensus        77 ~~~i~~~~~~~~~--~~~~~~~~------~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  147 (260)
T d1rwia_          77 NRVVTLAAGSNNQ--TVLPFDGL------NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  147 (260)
T ss_dssp             TEEEEECTTCSCC--EECCCCSC------CSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE
T ss_pred             eceeeeeeeccce--eeeeeeee------eecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeee
Confidence              55555443332  22222221      4578999997 8888877767777888876554322222122344578888


Q ss_pred             c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe-
Q 040307          175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS-  252 (339)
Q Consensus       175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-  252 (339)
                      . +++++++...++.|..+|........... .  .-.....+++.+ +++++++....+. |..++....  ....+. 
T Consensus       148 ~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~-~--~~~~p~gi~~d~-~g~l~vsd~~~~~-i~~~~~~~~--~~~~~~~  220 (260)
T d1rwia_         148 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-T--DITAPWGIAVDE-AGTVYVTEHNTNQ-VVKLLAGST--TSTVLPF  220 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCCEEECCC-S--SCCSEEEEEECT-TCCEEEEETTTTE-EEEECTTCS--CCEECCC
T ss_pred             cCCCCEeeeccccccccccccccceeeeeec-c--ccCCCccceeee-eeeeeeeecCCCE-EEEEeCCCC--eEEEEcc
Confidence            8 67888888888889999987654322211 1  234678899997 7777766655665 888876542  222222 


Q ss_pred             cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                      ..-.....|++++++ .++++-..+++|+.++.
T Consensus       221 ~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         221 TGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CSCCCEEEEEECTTC-CEEEEEGGGTEEEEECC
T ss_pred             CCCCCeEEEEEeCCC-CEEEEECCCCEEEEEeC
Confidence            222456899999998 57777666666654443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=3e-08  Score=78.60  Aligned_cols=242  Identities=10%  Similarity=0.074  Sum_probs=154.1

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe--ecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI--FDHPYTPTNIAFFPSEETLNPDIVATSG-   95 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~la~~~-   95 (339)
                      .+..|+++|+   ++++++-.    .++.|++|+  .++..........  .........+++.++..    .++++.. 
T Consensus        24 ~P~gvavd~d---g~i~VaD~----~n~rI~v~d--~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~   90 (279)
T d1q7fa_          24 EPSGVAVNAQ---NDIIVADT----NNHRIQIFD--KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG----DIIVTERS   90 (279)
T ss_dssp             CEEEEEECTT---CCEEEEEG----GGTEEEEEC--TTSCEEEEECCBSSSTTCBSSEEEEEEETTTT----EEEEEECG
T ss_pred             CccEEEEcCC---CCEEEEEC----CCCEEEEEe--CCCCEEEEecccCCCccccccccccccccccc----ccceeccC
Confidence            4689999999   88776655    588999954  4432222100000  01112345566666542    4444433 


Q ss_pred             C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--eccCCceeE
Q 040307           96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VAHDREVYD  171 (339)
Q Consensus        96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~v~~  171 (339)
                      .  .|.+++....   ....+....    ......+++.+ ++.++++....+.+.+++.. ++.+..+  ..+......
T Consensus        91 ~~~~i~~~~~~g~---~~~~~~~~~----~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~  161 (279)
T d1q7fa_          91 PTHQIQIYNQYGQ---FVRKFGATI----LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNG  161 (279)
T ss_dssp             GGCEEEEECTTSC---EEEEECTTT----CSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEE
T ss_pred             Ccccccccccccc---ceeecCCCc----ccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccce
Confidence            2  6666665432   344443211    15567899987 88888888888889998864 5555554  234456778


Q ss_pred             EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      +++. +++++++....+.|++||..... ... +...........+++.| +++++++-..++..|.+|+..  ++.+..
T Consensus       162 i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~~~-~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~--G~~~~~  236 (279)
T d1q7fa_         162 VVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQ-IGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD--GQLISA  236 (279)
T ss_dssp             EEECSSSEEEEEEGGGTEEEEEETTCCE-EEE-ESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT--SCEEEE
T ss_pred             eeeccceeEEeeeccccceeeeecCCce-eee-ecccccccCCccccccc-CCeEEEEECCCCcEEEEECCC--CCEEEE
Confidence            8888 67888888888999999976542 222 22223345678999998 788777654444338999853  556666


Q ss_pred             EecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          251 LSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       251 ~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +...  ......|++.|+| .+ ++++.+++|++|......
T Consensus       237 ~~~~~~~~~p~~vav~~dG-~l-~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         237 LESKVKHAQCFDVALMDDG-SV-VLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEESSCCSCEEEEEEETTT-EE-EEEETTTEEEEEECSCCC
T ss_pred             EeCCCCCCCEeEEEEeCCC-cE-EEEeCCCeEEEEEeeeec
Confidence            6433  2357899999998 44 455678999999988765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=2.9e-08  Score=78.65  Aligned_cols=235  Identities=9%  Similarity=-0.025  Sum_probs=149.1

Q ss_pred             CceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC-CccCCCCEEEEEEcCCCCCEEEEE-eCCCeE
Q 040307           73 TPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK-TSEFSSAITSFDWAGFDTRRVATC-SVDTTC  148 (339)
Q Consensus        73 ~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~v  148 (339)
                      ....|++++++     +++++-. + .|++||.+..   .+..+.... .......-..+++.+..+..+++. +.++.|
T Consensus        24 ~P~gvavd~dg-----~i~VaD~~n~rI~v~d~~G~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i   95 (279)
T d1q7fa_          24 EPSGVAVNAQN-----DIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI   95 (279)
T ss_dssp             CEEEEEECTTC-----CEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccEEEEcCCC-----CEEEEECCCCEEEEEeCCCC---EEEEecccCCCcccccccccccccccccccceeccCCcccc
Confidence            36899999999     7888754 3 9999996543   444442211 111112344566654334444443 345677


Q ss_pred             EEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307          149 VIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  226 (339)
                      ..++. .++....+. ........++.. +++++++....+.+.+++..... .. ......+......+++.+ +++++
T Consensus        96 ~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~-~~-~~g~~~~~~~~~~i~~d~-~g~i~  171 (279)
T d1q7fa_          96 QIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH-KFGCSKHLEFPNGVVVND-KQEIF  171 (279)
T ss_dssp             EEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE-EEECTTTCSSEEEEEECS-SSEEE
T ss_pred             ccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce-ee-cccccccccccceeeecc-ceeEE
Confidence            77776 455555552 234556788888 67777777777778888765432 22 222333456778899987 77777


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEe--cCCCCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLS--KHEGSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGPGYRSGNGGPSGDVEP  303 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~  303 (339)
                      ++....+. |++||..  ++.+.++.  +.......|++.|+| +++++-.. ++.|.+|+.. ++             .
T Consensus       172 v~d~~~~~-V~~~d~~--G~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~-G~-------------~  233 (279)
T d1q7fa_         172 ISDNRAHC-VKVFNYE--GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQ-------------L  233 (279)
T ss_dssp             EEEGGGTE-EEEEETT--CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SC-------------E
T ss_pred             eeeccccc-eeeeecC--CceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECCC-CC-------------E
Confidence            77776676 9999975  45555553  234467899999999 46666543 4568888743 22             2


Q ss_pred             eeee---cccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          304 ELCY---QSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       304 ~~~~---~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      +...   ........|+..|+|. |+.+..++.|++|+
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr  270 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYR  270 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEE
T ss_pred             EEEEeCCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEE
Confidence            2221   2234578999999996 66667899999997

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.20  E-value=6.3e-08  Score=77.99  Aligned_cols=253  Identities=7%  Similarity=-0.008  Sum_probs=148.0

Q ss_pred             CCeeEEEeeecCCcccEEEEeee---ccccCCeEEEEecCCCCCcccceeeEee-cCCCCceEEEEcCCCCCCCCCeEEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSF---LEDYSNKIELVNFNPETSDFSADNRLIF-DHPYTPTNIAFFPSEETLNPDIVAT   93 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~---~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~~~la~   93 (339)
                      ..+-.++|.|+   |+++++...   ....+|+|..  ++.++........... ........+.|.+++     ..+.+
T Consensus        18 ~g~EGpa~d~d---G~ly~~~~~~~~~~~~~g~I~r--~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-----~~l~v   87 (314)
T d1pjxa_          18 PGAEGPVFDKN---GDFYIVAPEVEVNGKPAGEILR--IDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-----NQLFV   87 (314)
T ss_dssp             TTCEEEEECTT---SCEEEEETTCEETTEECCEEEE--ECTTTCCEEEEECCEETTEECCEEEEEECSSS-----SEEEE
T ss_pred             CCCeEeEEeCC---CCEEEEECccccccccCCEEEE--EECCCCcEEEEECCccccCCCcceeEEEeCCC-----CEEEE
Confidence            34567899999   887776431   0011344544  6666554433111101 112346789999998     65554


Q ss_pred             eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---------------CCeEEEEECCCC
Q 040307           94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---------------DTTCVIWDIDRE  156 (339)
Q Consensus        94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------d~~v~i~d~~~~  156 (339)
                      +. . .+...+.+...   ...+............+.+++.| ++++.++-..               .|.|..++.. +
T Consensus        88 ad~~~~i~~~~~~g~~---~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g  162 (314)
T d1pjxa_          88 ADMRLGLLVVQTDGTF---EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             EETTTEEEEEETTSCE---EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred             EECCCeEEEEeCCCcE---EEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-C
Confidence            43 3 77777876553   11111111000012357899997 8887776422               2345555542 3


Q ss_pred             eeeeeeeccCCceeEEEec-CCc-----EEEEEeCCCcEEEEECCCCccee---eEEeCCC-CCCCeEEEEEecCCCCeE
Q 040307          157 ILETQLVAHDREVYDISWG-GFN-----VFASVSGDCSVRVFDLRDKERST---IIYENPV-QDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~-~~~-----~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~-~~~~v~~~~~~p~~~~~l  226 (339)
                      +..... ..-...+.++|+ +++     ++++-+..+.|..||+.......   .....+. .......+++.+ +|++.
T Consensus       163 ~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~Gnly  240 (314)
T d1pjxa_         163 QMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLL  240 (314)
T ss_dssp             CEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEE
T ss_pred             ceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEE
Confidence            322222 223344678887 432     55555677889999876543222   1112111 122356799986 88877


Q ss_pred             EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++....+. |.+||... +..+..+.......++++|.|++..++++.+.+|.|..+++....
T Consensus       241 Va~~~~g~-I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         241 VANWGSSH-IEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEETTTE-EEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEEcCCCE-EEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            76655666 99999775 555666766667889999999985566777788888877776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=3.5e-08  Score=79.16  Aligned_cols=231  Identities=7%  Similarity=-0.048  Sum_probs=145.0

Q ss_pred             cCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307           69 DHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT  146 (339)
Q Consensus        69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  146 (339)
                      .-...+..++++|++     +++++...  +|..++.+..    ...+....     ..+.+++|+| +++++++...++
T Consensus        25 p~~~~~e~iAv~pdG-----~l~vt~~~~~~I~~i~p~g~----~~~~~~~~-----~~~~gla~~~-dG~l~v~~~~~~   89 (302)
T d2p4oa1          25 PVNTFLENLASAPDG-----TIFVTNHEVGEIVSITPDGN----QQIHATVE-----GKVSGLAFTS-NGDLVATGWNAD   89 (302)
T ss_dssp             CTTCCEEEEEECTTS-----CEEEEETTTTEEEEECTTCC----EEEEEECS-----SEEEEEEECT-TSCEEEEEECTT
T ss_pred             CCCCCcCCEEECCCC-----CEEEEeCCCCEEEEEeCCCC----EEEEEcCC-----CCcceEEEcC-CCCeEEEecCCc
Confidence            334467899999999     89988774  7777775432    22233333     6789999998 999999988888


Q ss_pred             eEEEEECCCCe-eeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-------CCCCCCeEE
Q 040307          147 TCVIWDIDREI-LETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-------PVQDCPLLR  215 (339)
Q Consensus       147 ~v~i~d~~~~~-~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~v~~  215 (339)
                      .+..++..... ....+.  ........+.+. +++++++.+.++.+..+|.............       .........
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            88888764432 112221  234567889998 7888888888888888888876533222111       011234456


Q ss_pred             EEEecCCCCeEEEEeeCCCeEEEEecCCCCCce-EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307          216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV-VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN  294 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  294 (339)
                      +.+.  .+.++++.+..+. |..++........ ............++++++| .++++...++.|..++.....     
T Consensus       170 i~~~--~~~l~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G~~-----  240 (302)
T d2p4oa1         170 LKRF--GNFLYVSNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRST-----  240 (302)
T ss_dssp             EEEE--TTEEEEEETTTTE-EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCE-----
T ss_pred             cccc--CCceeeecCCCCe-EEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCCCE-----
Confidence            6664  3344444444444 8888876533211 1122224456789999999 577777788888888665432     


Q ss_pred             CCCCCcccceee-ecccceeEEEEe---cCCCCceEEEec
Q 040307          295 GGPSGDVEPELC-YQSMAEINVVRW---SPLELDWIAIAF  330 (339)
Q Consensus       295 ~~~~~~~~~~~~-~~~~~~i~~~~~---~p~~~~l~~~~~  330 (339)
                             ..+.. ...-...++++|   +||++.|+.++.
T Consensus       241 -------~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         241 -------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             -------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             -------EEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence                   11111 123345789999   667776765543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.12  E-value=2.7e-07  Score=74.18  Aligned_cols=238  Identities=10%  Similarity=0.085  Sum_probs=140.7

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeCC---------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSGD---------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC  142 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~~---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  142 (339)
                      .....++|.+++     +++++...         +|..|+.+++...........   .....-..+.|.+ +++.++++
T Consensus        18 ~g~EGpa~d~dG-----~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~---~~~g~P~Gl~~~~-dg~~l~va   88 (314)
T d1pjxa_          18 PGAEGPVFDKNG-----DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN---GYGGIPAGCQCDR-DANQLFVA   88 (314)
T ss_dssp             TTCEEEEECTTS-----CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET---TEECCEEEEEECS-SSSEEEEE
T ss_pred             CCCeEeEEeCCC-----CEEEEECccccccccCCEEEEEECCCCcEEEEECCccc---cCCCcceeEEEeC-CCCEEEEE
Confidence            346788999999     77776432         477777776652222211111   0113456899997 88888888


Q ss_pred             eCCCeEEEEECCCCeeeeeeeccC----CceeEEEec-CCcEEEEEeC---------------CCcEEEEECCCCcceee
Q 040307          143 SVDTTCVIWDIDREILETQLVAHD----REVYDISWG-GFNVFASVSG---------------DCSVRVFDLRDKERSTI  202 (339)
Q Consensus       143 ~~d~~v~i~d~~~~~~~~~~~~~~----~~v~~~~~~-~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~  202 (339)
                      ...+.|...+..............    ...+.+++. ++++.++-..               .|.|..++... + ...
T Consensus        89 d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~-~~~  166 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q-MIQ  166 (314)
T ss_dssp             ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C-EEE
T ss_pred             ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-c-eeE
Confidence            877888888986554222111111    135778888 6777766422               22344443322 2 222


Q ss_pred             EEeCCCCCCCeEEEEEecCCCC----eEEEEeeCCCeEEEEecCCCCCce-----EEEec-CCCCeeEEEeccCCCCeEE
Q 040307          203 IYENPVQDCPLLRLEWNKADPR----FMATVGMDSNKVVVLDIRFPTNPV-----VVLSK-HEGSVNGISWAPLYGRRLC  272 (339)
Q Consensus       203 ~~~~~~~~~~v~~~~~~p~~~~----~l~~~~~d~~~i~i~d~~~~~~~~-----~~~~~-~~~~v~~~~~~p~~~~~l~  272 (339)
                      ....   -...+.++|+| +++    .|+++......|..||+...+...     ..+.. +....-.+++.++| ++.+
T Consensus       167 ~~~~---~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyV  241 (314)
T d1pjxa_         167 VDTA---FQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLV  241 (314)
T ss_dssp             EEEE---ESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEE
T ss_pred             eeCC---cceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEE
Confidence            2211   12456889998 443    455544333348888876533221     11111 12235679999999 5777


Q ss_pred             EEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCCCce-EEEecCCeEEEEe
Q 040307          273 SVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDW-IAIAFVNKLQLLK  338 (339)
Q Consensus       273 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l-~~~~~d~~v~~w~  338 (339)
                      +....+.|.+||.+...             ... +......+++++|.|+++.| ++.+.++.|..++
T Consensus       242 a~~~~g~I~~~dp~~g~-------------~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQ-------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEETTTEEEEECTTCBS-------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEcCCCEEEEEeCCCCE-------------EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            77778899999877655             332 23334678899999998755 4666778777665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5e-07  Score=76.71  Aligned_cols=288  Identities=8%  Similarity=0.018  Sum_probs=154.2

Q ss_pred             CCeeEEEeeecCCcccEEEEeeec-----cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFL-----EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~-----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      ..+....||||   +++++.+...     -...+.+.++++.........  . .......+....|||+|     +.+|
T Consensus        61 ~~~~~~~~SpD---~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~--~-~~~~~~~l~~~~wSPDG-----~~ia  129 (465)
T d1xfda1          61 LRAIRYEISPD---REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD--P-PEVSNAKLQYAGWGPKG-----QQLI  129 (465)
T ss_dssp             TTCSEEEECTT---SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC--C-TTCCSCCCSBCCBCSST-----TCEE
T ss_pred             cccceeEECCC---CCeEEEEEcccceeEeeccccEEEEEccCCceeecc--C-ccCCccccceeeeccCC-----ceEE
Confidence            46778899999   9988887520     012467788666544332221  0 11234456778999999     6777


Q ss_pred             EeCC-cEEEEeecCCcceeEEEeecCCC------------ccCCCCEEEEEEcCCCCCEEEEEeCC-C------------
Q 040307           93 TSGD-SLRLWEIHDDRTELKSLLNSNKT------------SEFSSAITSFDWAGFDTRRVATCSVD-T------------  146 (339)
Q Consensus        93 ~~~~-~i~iw~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~~l~~~~~d-~------------  146 (339)
                      -..+ .|.+.+..++....+ +..+...            ++....-.++.||| |++.||....| .            
T Consensus       130 fv~~~nl~~~~~~~~~~~~l-t~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~  207 (465)
T d1xfda1         130 FIFENNIYYCAHVGKQAIRV-VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTG  207 (465)
T ss_dssp             EEETTEEEEESSSSSCCEEE-ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEecceEEEEecCCCceEEE-ecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccc
Confidence            6665 888888876652221 1111110            00111224788999 99999986422 2            


Q ss_pred             ---------------------eEEEEECCCCeeeeee------eccCCceeEEEec-CCcEEEEEe-CC---CcEEEEEC
Q 040307          147 ---------------------TCVIWDIDREILETQL------VAHDREVYDISWG-GFNVFASVS-GD---CSVRVFDL  194 (339)
Q Consensus       147 ---------------------~v~i~d~~~~~~~~~~------~~~~~~v~~~~~~-~~~~l~~~~-~d---~~i~i~d~  194 (339)
                                           .+.++|+..+......      ......+..+.|+ ++++++... ++   ..+.++|.
T Consensus       208 ~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~  287 (465)
T d1xfda1         208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (465)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             cccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcC
Confidence                                 2444555443321111      1112236778898 555444332 22   25788999


Q ss_pred             CCCcceeeEEeCCCCCCCe----EEEEEecCCCCeE-EE-Ee-eCCC-eEEEEecC-----CCCCceEEEecCCCCeeEE
Q 040307          195 RDKERSTIIYENPVQDCPL----LRLEWNKADPRFM-AT-VG-MDSN-KVVVLDIR-----FPTNPVVVLSKHEGSVNGI  261 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~l-~~-~~-~d~~-~i~i~d~~-----~~~~~~~~~~~~~~~v~~~  261 (339)
                      .+++......+.  ....|    ....|+| +|+.+ +. .+ .++. .++..++.     ..+..+..+....-.|..+
T Consensus       288 ~tg~~~~~~~e~--~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i  364 (465)
T d1xfda1         288 TTGVCTKKHEDE--SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI  364 (465)
T ss_dssp             TTCCEEEEEEEE--CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred             CCCcEEEEEEEc--CCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE
Confidence            888755544333  12222    3467887 55533 22 22 2222 24444332     1122334444444566665


Q ss_pred             -EeccCCCCeEEEEeCC--CcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCCCceEEEe
Q 040307          262 -SWAPLYGRRLCSVADD--SRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       262 -~~~p~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                       .|+++++.+.+++..+  +.-.||.+......        ...++. .........++.|||++++++..+
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~--------~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF--------NRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTC--------CCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC--------cceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence             6888875555566644  34567776643300        001111 112344577999999999877544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=3.9e-06  Score=67.41  Aligned_cols=228  Identities=8%  Similarity=0.007  Sum_probs=136.5

Q ss_pred             CCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----C
Q 040307           72 YTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV----D  145 (339)
Q Consensus        72 ~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d  145 (339)
                      ..+..++|.+++     +++++-. + .|..|+.+..+  ....+....     .....+++++ +++++++...    .
T Consensus        40 ~~lEG~~~D~~G-----~Ly~~D~~~g~I~ri~p~g~~--~~~~~~~~~-----~~p~gla~~~-dG~l~va~~~~~~~~  106 (319)
T d2dg1a1          40 LQLEGLNFDRQG-----QLFLLDVFEGNIFKINPETKE--IKRPFVSHK-----ANPAAIKIHK-DGRLFVCYLGDFKST  106 (319)
T ss_dssp             CCEEEEEECTTS-----CEEEEETTTCEEEEECTTTCC--EEEEEECSS-----SSEEEEEECT-TSCEEEEECTTSSSC
T ss_pred             cCcEeCEECCCC-----CEEEEECCCCEEEEEECCCCe--EEEEEeCCC-----CCeeEEEECC-CCCEEEEecCCCccc
Confidence            345789999999     7777754 3 88888877765  333333333     5678999998 8888777543    2


Q ss_pred             CeEEEEECCCCeeeeeeec--cCCceeEEEec-CCcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307          146 TTCVIWDIDREILETQLVA--HDREVYDISWG-GFNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRL  216 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  216 (339)
                      +.+...+............  -......+.+. ++++.++....      +.+..++.............    ...+.+
T Consensus       107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~----~~pnGi  182 (319)
T d2dg1a1         107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI----SVANGI  182 (319)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE----SSEEEE
T ss_pred             eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecc----ceeeee
Confidence            3455556555443332221  12346778888 67766654321      23445554433322222221    346789


Q ss_pred             EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe-------cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS-------KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      +|+| +++.|+.+......|..||+...........       ......-.+++.++| ++.++....+.|.+|+.. ++
T Consensus       183 a~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p~-G~  259 (319)
T d2dg1a1         183 ALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GY  259 (319)
T ss_dssp             EECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SC
T ss_pred             eecc-ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECCC-Cc
Confidence            9998 7776655544433499999876443332211       111235679999999 577887888999999954 33


Q ss_pred             CCCCCCCCCCcccceee----ecccceeEEEEecCCCCceEEEe
Q 040307          290 YRSGNGGPSGDVEPELC----YQSMAEINVVRWSPLELDWIAIA  329 (339)
Q Consensus       290 ~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p~~~~l~~~~  329 (339)
                                .+..+..    ..+...+++++|.|.+..++.+.
T Consensus       260 ----------~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         260 ----------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             ----------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             ----------EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence                      0111111    12344688999999887666544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.3e-06  Score=70.22  Aligned_cols=203  Identities=9%  Similarity=0.043  Sum_probs=127.3

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEEECCCCc
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVFDLRDKE  198 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~  198 (339)
                      ..+..++|.+ ++++.++-...+.|..|+...++....+.........++++ +++++++...+    +.+...+.....
T Consensus        40 ~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            3457899997 88888887788999999987776555555555678899999 78777765432    334555555444


Q ss_pred             ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC---eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307          199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN---KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  275 (339)
                      .... .........+..+++.| +|++.++......   .-.+|-+......+..+...-...+.++|+|++..+.++-+
T Consensus       119 ~~~~-~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         119 LQDI-IEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             CEEE-ECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeee-ccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence            3222 22222234678899998 8876665322110   02244333323444444433445688999999954556666


Q ss_pred             CCCcEEEEEecCCCCCCCCCCCCCcccce-----eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307          276 DDSRALIWEVVGPGYRSGNGGPSGDVEPE-----LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK  338 (339)
Q Consensus       276 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~  338 (339)
                      ..+.|..|++.....         ...+.     .........-.+++.++|..+++...++.|.+|+
T Consensus       197 ~~~~I~~~d~~~~g~---------~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         197 TANRLHRIALEDDGV---------TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             GGTEEEEEEECTTSS---------SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cCCceEEEEEcCCCc---------eeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            788999999876540         00111     1111223456799999998777777888888774

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.91  E-value=4.7e-06  Score=66.09  Aligned_cols=228  Identities=8%  Similarity=0.003  Sum_probs=145.8

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEE
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLW  101 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw  101 (339)
                      ...|.+.   ...|.....   ..+.|.-  ++.+++....     ......+.++++.+++     .+++++.+.+.++
T Consensus        22 gp~wd~~---~~~l~wvDi---~~~~I~r--~d~~~g~~~~-----~~~~~~~~~i~~~~dg-----~l~va~~~gl~~~   83 (295)
T d2ghsa1          22 GPTFDPA---SGTAWWFNI---LERELHE--LHLASGRKTV-----HALPFMGSALAKISDS-----KQLIASDDGLFLR   83 (295)
T ss_dssp             EEEEETT---TTEEEEEEG---GGTEEEE--EETTTTEEEE-----EECSSCEEEEEEEETT-----EEEEEETTEEEEE
T ss_pred             CCeEECC---CCEEEEEEC---CCCEEEE--EECCCCeEEE-----EECCCCcEEEEEecCC-----CEEEEEeCccEEe
Confidence            4568876   444544442   4677766  5555554442     4456678999999998     7888776789999


Q ss_pred             eecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----CCeEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307          102 EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV----DTTCVIWDIDREILETQLVAHDREVYDISWG-G  176 (339)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~  176 (339)
                      |..+++.+.+.......   ....++.+.+.| ++++.++...    .+.-.+|.+..++....... -...+.+.|+ +
T Consensus        84 d~~tg~~~~l~~~~~~~---~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d  158 (295)
T d2ghsa1          84 DTATGVLTLHAELESDL---PGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPD  158 (295)
T ss_dssp             ETTTCCEEEEECSSTTC---TTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTT
T ss_pred             ecccceeeEEeeeecCC---CcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCC
Confidence            99988744333322211   124688999998 8887666543    23445676666664444433 3345789999 5


Q ss_pred             Cc-EEEEEeCCCcEEEEECCCCc-----ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307          177 FN-VFASVSGDCSVRVFDLRDKE-----RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV  250 (339)
Q Consensus       177 ~~-~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~  250 (339)
                      ++ ++++-+..+.|..|++....     .................+++.+ +|++.++.-..+. |..||..  ++.+..
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~-V~~~dp~--G~~~~~  234 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGA-VDRYDTD--GNHIAR  234 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTE-EEEECTT--CCEEEE
T ss_pred             CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCc-eEEecCC--CcEeeE
Confidence            55 45566677889988875322     1122223323345678899986 7776666555555 9999964  567777


Q ss_pred             EecCCCCeeEEEec-cCCCCeEEEEeC
Q 040307          251 LSKHEGSVNGISWA-PLYGRRLCSVAD  276 (339)
Q Consensus       251 ~~~~~~~v~~~~~~-p~~~~~l~~~~~  276 (339)
                      +......+++++|- |+...+++|...
T Consensus       235 i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         235 YEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            77666779999996 676556666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.7e-06  Score=73.38  Aligned_cols=225  Identities=9%  Similarity=0.026  Sum_probs=125.6

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-----
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-----   96 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-----   96 (339)
                      ...|.++   +.++...     .+|.|.+|+..........  ....-....+....||||+     +.++...+     
T Consensus        21 ~~~W~~~---~~~~~~~-----~~g~i~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~SpD~-----~~vl~~~~~~~~~   85 (465)
T d1xfda1          21 EAKWISD---TEFIYRE-----QKGTVRLWNVETNTSTVLI--EGKKIESLRAIRYEISPDR-----EYALFSYNVEPIY   85 (465)
T ss_dssp             CCCBSSS---SCBCCCC-----SSSCEEEBCGGGCCCEEEE--CTTTTTTTTCSEEEECTTS-----SEEEEEESCCCCS
T ss_pred             CCEEeCC---CcEEEEe-----CCCcEEEEECCCCCEEEEE--cCccccccccceeEECCCC-----CeEEEEEccccee
Confidence            4578888   7766543     4788888665544332221  1111123357788999999     66555432     


Q ss_pred             ------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCc-
Q 040307           97 ------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDRE-  168 (339)
Q Consensus        97 ------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~-  168 (339)
                            .+.++|+.+++...+.......     ..+....||| +++.||... ++.|.+.+...+...+... +..+. 
T Consensus        86 r~s~~~~~~i~d~~~~~~~~l~~~~~~~-----~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i  158 (465)
T d1xfda1          86 QHSYTGYYVLSKIPHGDPQSLDPPEVSN-----AKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVI  158 (465)
T ss_dssp             SSCCCSEEEEEESSSCCCEECCCTTCCS-----CCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTE
T ss_pred             EeeccccEEEEEccCCceeeccCccCCc-----cccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCccee
Confidence                  5788899888643332222222     4566688999 999998875 6789988887665443332 11111 


Q ss_pred             ----------------eeEEEec-CCcEEEEEeCC-CcEE---------------------------------EEECCCC
Q 040307          169 ----------------VYDISWG-GFNVFASVSGD-CSVR---------------------------------VFDLRDK  197 (339)
Q Consensus       169 ----------------v~~~~~~-~~~~l~~~~~d-~~i~---------------------------------i~d~~~~  197 (339)
                                      -..+.|+ +++.||....| ..+.                                 ++|+..+
T Consensus       159 ~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~  238 (465)
T d1xfda1         159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (465)
T ss_dssp             EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             eccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCC
Confidence                            1467799 78888876532 3333                                 3333332


Q ss_pred             cceeeEEeC---CCCCCCeEEEEEecCCCCeEEEEee-CCC--eEEEEecCCCCCceEEEec-CCCCe----eEEEeccC
Q 040307          198 ERSTIIYEN---PVQDCPLLRLEWNKADPRFMATVGM-DSN--KVVVLDIRFPTNPVVVLSK-HEGSV----NGISWAPL  266 (339)
Q Consensus       198 ~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~-d~~--~i~i~d~~~~~~~~~~~~~-~~~~v----~~~~~~p~  266 (339)
                      .........   ......+..+.|.| ++++++.... +..  .+.++|..+ ++....+.. ....|    ....|+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~~~~~p~~~~d  316 (465)
T d1xfda1         239 THDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSKD  316 (465)
T ss_dssp             CCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             cEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEeccCCceeEccC
Confidence            211110000   00112357789987 6665555333 222  477888876 433333322 22332    34689999


Q ss_pred             CCCe
Q 040307          267 YGRR  270 (339)
Q Consensus       267 ~~~~  270 (339)
                      |..+
T Consensus       317 g~~~  320 (465)
T d1xfda1         317 GRKF  320 (465)
T ss_dssp             SCSE
T ss_pred             CCee
Confidence            8543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.47  E-value=0.00016  Score=57.04  Aligned_cols=191  Identities=10%  Similarity=0.023  Sum_probs=118.1

Q ss_pred             eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEee-cCCCCceEEEEcCCCCCCCC
Q 040307           10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIF-DHPYTPTNIAFFPSEETLNP   88 (339)
Q Consensus        10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~   88 (339)
                      ....+..+..+.++++.++   +.++++ +     .+.+.++  +..+++......... .....++.+.+.|++     
T Consensus        51 ~~~~~~~~~~~~~i~~~~d---g~l~va-~-----~~gl~~~--d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G-----  114 (295)
T d2ghsa1          51 RKTVHALPFMGSALAKISD---SKQLIA-S-----DDGLFLR--DTATGVLTLHAELESDLPGNRSNDGRMHPSG-----  114 (295)
T ss_dssp             EEEEEECSSCEEEEEEEET---TEEEEE-E-----TTEEEEE--ETTTCCEEEEECSSTTCTTEEEEEEEECTTS-----
T ss_pred             eEEEEECCCCcEEEEEecC---CCEEEE-E-----eCccEEe--ecccceeeEEeeeecCCCcccceeeEECCCC-----
Confidence            3445666788999999988   876665 4     2456674  444444443111101 112357899999999     


Q ss_pred             CeEEEeC-C-----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCe----
Q 040307           89 DIVATSG-D-----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREI----  157 (339)
Q Consensus        89 ~~la~~~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~----  157 (339)
                      ++.++.. .     .-.+|.+..++  ........      ..-+.++|++ +++ ++++-+..+.|..+++....    
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~------~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~  185 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGK--VTKLFADI------SIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPT  185 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTE--EEEEEEEE------SSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             CEEEEeccccccccceeEeeecCCc--EEEEeecc------CCcceeeecC-CCceEEEeecccceeeEeeecccccccc
Confidence            7777653 1     56778877765  33333332      4567899998 665 55566678899999874321    


Q ss_pred             ----eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307          158 ----LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV  229 (339)
Q Consensus       158 ----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  229 (339)
                          ......+.......+++. ++++.++.-..+.|..||.. ++....+ ..+  ...+++++|--.+.+.|++.
T Consensus       186 ~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i-~lP--~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         186 GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARY-EVP--GKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEE-ECS--CSBEEEEEEESTTSCEEEEE
T ss_pred             cceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEe-cCC--CCceEEEEEeCCCCCEEEEE
Confidence                111122334456788888 78888887778899999964 4434433 332  24689999964355545443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=0.00019  Score=55.46  Aligned_cols=191  Identities=13%  Similarity=0.074  Sum_probs=112.6

Q ss_pred             eEEEeC-CcEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307           90 IVATSG-DSLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH  165 (339)
Q Consensus        90 ~la~~~-~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  165 (339)
                      +|.-+. ..|+-.+++...   ......+..+.     ..+.+++|.+.++..+.+-..++.|+..+++.......+...
T Consensus         3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~-----~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~   77 (263)
T d1npea_           3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD   77 (263)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred             EEEEeCCCeEEEEECCCccccccccccccccCC-----CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec
Confidence            344443 477777776543   11122222222     457789998734444444456788998888765544444333


Q ss_pred             CCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307          166 DREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       166 ~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      ...+.++++.  .+++..+-...+.|.+.++........ ...  ....+..++++|..+.++.+-...+. .+|+....
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l-~~~--~l~~p~~l~vdp~~g~ly~t~~~~~~-~~I~r~~~  153 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-FDT--GLVNPRGIVTDPVRGNLYWTDWNRDN-PKIETSHM  153 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECS--SCSSEEEEEEETTTTEEEEEECCSSS-CEEEEEET
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE-ecc--cccCCcEEEEecccCcEEEeecCCCC-cEEEEecC
Confidence            3567888887  455556666778999999987664333 222  23568899999955554444332233 45654433


Q ss_pred             CCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          244 PTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       244 ~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      .+.....+. ..-....++++.+.++++..+-...+.|...++....
T Consensus       154 dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            333333333 2234668999998875444554567788888887655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.33  E-value=0.00016  Score=56.19  Aligned_cols=222  Identities=8%  Similarity=-0.010  Sum_probs=112.7

Q ss_pred             EEcCC--CCCCCCCeEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-C-----CeE
Q 040307           78 AFFPS--EETLNPDIVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-D-----TTC  148 (339)
Q Consensus        78 ~~~~~--~~~~~~~~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-----~~v  148 (339)
                      ..+|+  |     +.+|-.+ +.|.+.++.+++.   ..+..+.     ..+...+||| |++.||.... +     ..|
T Consensus         5 ~~sPdi~G-----~~v~f~~~~dl~~~d~~~g~~---~~Lt~~~-----~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2           5 LLNPDIHG-----DRIIFVCCDDLWEHDLKSGST---RKIVSNL-----GVINNARFFP-DGRKIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             CEEEEEET-----TEEEEEETTEEEEEETTTCCE---EEEECSS-----SEEEEEEECT-TSSEEEEEEEESTTCCEEEE
T ss_pred             ccCCCCCC-----CEEEEEeCCcEEEEECCCCCE---EEEecCC-----CcccCEEECC-CCCEEEEEEeeCCCCCceEE
Confidence            35788  8     5555444 5899999998863   2344443     5678899999 9998886542 2     247


Q ss_pred             EEEECCCCeeeeeee------ccCCceeEEEec-CCcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307          149 VIWDIDREILETQLV------AHDREVYDISWG-GFNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLR  215 (339)
Q Consensus       149 ~i~d~~~~~~~~~~~------~~~~~v~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  215 (339)
                      .+++...++......      ..........|+ +++.|+.....      ..+...+......  ....    ......
T Consensus        71 ~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~  144 (281)
T d1k32a2          71 YFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF--VPLN----LGPATH  144 (281)
T ss_dssp             EEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE--EECC----SCSCSE
T ss_pred             EEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee--EEec----CCccce
Confidence            788887776443221      112234677888 67777765332      1233444443321  1111    112222


Q ss_pred             EEEecCCCCeEEEEeeCCC----------eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc--EEEE
Q 040307          216 LEWNKADPRFMATVGMDSN----------KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR--ALIW  283 (339)
Q Consensus       216 ~~~~p~~~~~l~~~~~d~~----------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--v~iw  283 (339)
                       .+.+.++..++.......          .........  .................++++.  ++.....++.  |.++
T Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~  219 (281)
T d1k32a2         145 -ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS--GAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYST  219 (281)
T ss_dssp             -EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET--TEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEE
T ss_pred             -eeecCCCeEEEeeccccceeeeeccCCcceeeeeccc--cceeeccCCccccceeeeeccc--cceecccccccceEEE
Confidence             333324444443322211          011111111  1122222334445556666653  4444544444  5555


Q ss_pred             EecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          284 EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      |+....             ...+..+ .......|+|||+.|+. ..++.|.++++
T Consensus       220 d~~g~~-------------~~~lt~~-~~~~~~~~SpDG~~I~f-~~~~~l~~~d~  260 (281)
T d1k32a2         220 DLDGKD-------------LRKHTSF-TDYYPRHLNTDGRRILF-SKGGSIYIFNP  260 (281)
T ss_dssp             ETTSCS-------------CEECCCC-CSSCEEEEEESSSCEEE-EETTEEEEECT
T ss_pred             eCCCCc-------------eEEeecC-CCcccccCcCCCCEEEE-EeCCEEEEEEC
Confidence            665554             2222222 12223468999987664 44677777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=0.00034  Score=54.21  Aligned_cols=232  Identities=8%  Similarity=-0.024  Sum_probs=116.0

Q ss_pred             eeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----C---
Q 040307           25 WSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----D---   96 (339)
Q Consensus        25 ~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----~---   96 (339)
                      .||+-. |+.+|..+     ++.|.+  ++..+++...    ...+.+.+...+|||||     +.||-..     +   
T Consensus         6 ~sPdi~-G~~v~f~~-----~~dl~~--~d~~~g~~~~----Lt~~~~~~~~p~~SPDG-----~~iaf~~~~~~~~~~~   68 (281)
T d1k32a2           6 LNPDIH-GDRIIFVC-----CDDLWE--HDLKSGSTRK----IVSNLGVINNARFFPDG-----RKIAIRVMRGSSLNTA   68 (281)
T ss_dssp             EEEEEE-TTEEEEEE-----TTEEEE--EETTTCCEEE----EECSSSEEEEEEECTTS-----SEEEEEEEESTTCCEE
T ss_pred             cCCCCC-CCEEEEEe-----CCcEEE--EECCCCCEEE----EecCCCcccCEEECCCC-----CEEEEEEeeCCCCCce
Confidence            455521 66788777     676666  5555555543    24567778999999999     6666432     1   


Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCCCeeeeeeeccCCcee
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDREILETQLVAHDREVY  170 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~v~  170 (339)
                      .|.+++..+++...+....... ...........|+| +++.|+.....      ..+...+...+.....   +.....
T Consensus        69 ~i~~~~~~~g~~~~lt~~~~~~-~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  143 (281)
T d1k32a2          69 DLYFYNGENGEIKRITYFSGKS-TGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPAT  143 (281)
T ss_dssp             EEEEEETTTTEEEECCCCCEEE-ETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCS
T ss_pred             EEEEEEecCCceEEeeecCCCc-cCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccc
Confidence            3666666666522221111100 00113456788998 88888875432      2344555544433221   222223


Q ss_pred             EEEecCCcEEEEEe-CCC-----------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eEE
Q 040307          171 DISWGGFNVFASVS-GDC-----------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-KVV  237 (339)
Q Consensus       171 ~~~~~~~~~l~~~~-~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~  237 (339)
                      ...+.++..++... .+.           ........... ......   .........+.+ + .++.....++. .|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~  217 (281)
T d1k32a2         144 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVD---MSTHVSSPVIVG-H-RIYFITDIDGFGQIY  217 (281)
T ss_dssp             EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEEC---CSSCCEEEEEET-T-EEEEEECTTSSCEEE
T ss_pred             eeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccC---Cccccceeeeec-c-ccceecccccccceE
Confidence            33333433333222 111           11111111111 111111   223444555654 2 23333333332 477


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      ++|+..  .....+..+. ......|+|+|. .|+.. .++.|+++|+..++
T Consensus       218 ~~d~~g--~~~~~lt~~~-~~~~~~~SpDG~-~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         218 STDLDG--KDLRKHTSFT-DYYPRHLNTDGR-RILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             EEETTS--CSCEECCCCC-SSCEEEEEESSS-CEEEE-ETTEEEEECTTTCC
T ss_pred             EEeCCC--CceEEeecCC-CcccccCcCCCC-EEEEE-eCCEEEEEECCCCC
Confidence            778765  2344444332 233456899995 55443 35789999988777

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.26  E-value=0.00069  Score=55.28  Aligned_cols=249  Identities=10%  Similarity=0.042  Sum_probs=131.6

Q ss_pred             EEEeeecCCcccEEEEeeeccc-----cCC--eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307           22 TVAWSVRHDRKSRLAVGSFLED-----YSN--KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS   94 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~-----~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~   94 (339)
                      ......+   +++++.|+....     ...  .+.+|  +..+............+........+.+++     .+++.|
T Consensus        24 ~a~~~~~---gkv~v~GG~~~~~~~~~~~~~~~~~~y--d~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----~i~v~G   93 (387)
T d1k3ia3          24 AAIEPTS---GRVLMWSSYRNDAFGGSPGGITLTSSW--DPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----QIVVTG   93 (387)
T ss_dssp             EEEETTT---TEEEEEEECCCTTTCSCCCSEEEEEEE--CTTTCCBCCCEEEECSCCCSSCEEEECTTS-----CEEEEC
T ss_pred             EEEEeeC---CEEEEEEeecCcccCCCCCceeEEEEE--ECCCCcEeecCCCCCCcccceeEEEEecCC-----cEEEee
Confidence            3334446   889998884111     011  25564  444444444334434555556677899999     899888


Q ss_pred             CC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCCCeeeeeeec-
Q 040307           95 GD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDREILETQLVA-  164 (339)
Q Consensus        95 ~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~-  164 (339)
                      +.   .+.+||..+..+.....+....     .. ...+..+ ++++++.|+.+      ..+.+||..+.+-. .+.. 
T Consensus        94 g~~~~~~~~yd~~~~~w~~~~~~~~~r-----~~-~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~  165 (387)
T d1k3ia3          94 GNDAKKTSLYDSSSDSWIPGPDMQVAR-----GY-QSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNA  165 (387)
T ss_dssp             SSSTTCEEEEEGGGTEEEECCCCSSCC-----SS-CEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTS
T ss_pred             cCCCcceeEecCccCcccccccccccc-----cc-cceeeec-CCceeeeccccccccccceeeeecCCCCcee-ecCCC
Confidence            63   9999999988754443333221     12 2445554 88998888753      36899999876421 1100 


Q ss_pred             ---------cC------CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEe--C---CCCCCCeEEEEEecCCCC
Q 040307          165 ---------HD------REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYE--N---PVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       165 ---------~~------~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~---~~~~~~v~~~~~~p~~~~  224 (339)
                               +.      .....+...++..++.++.++.+.++|..+.........  .   ......-.++.+...+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (387)
T d1k3ia3         166 KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK  245 (387)
T ss_dssp             CSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTE
T ss_pred             cccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCc
Confidence                     00      111111111466777777777777777776642221110  0   000111233444444677


Q ss_pred             eEEEEeeCCC-------eEEEEecCCCCCceEEEec-----CCCCeeEEEeccCCCCeEEEEeCC-----------CcEE
Q 040307          225 FMATVGMDSN-------KVVVLDIRFPTNPVVVLSK-----HEGSVNGISWAPLYGRRLCSVADD-----------SRAL  281 (339)
Q Consensus       225 ~l~~~~~d~~-------~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~~~~~d-----------g~v~  281 (339)
                      +++.|+....       ...+.+.............     +...-.+....+++ ++++.|+.+           ..+.
T Consensus       246 v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg-~i~v~GG~~~~~~~~~~~~~~~ve  324 (387)
T d1k3ia3         246 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPE  324 (387)
T ss_dssp             EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCE
T ss_pred             eEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCC-eEEEECCcccCccCCCCcEeceEE
Confidence            7777765431       1334443321111111111     11122345666888 588888743           1477


Q ss_pred             EEEecCCC
Q 040307          282 IWEVVGPG  289 (339)
Q Consensus       282 iwd~~~~~  289 (339)
                      +||.....
T Consensus       325 ~Ydp~~~~  332 (387)
T d1k3ia3         325 IYVPEQDT  332 (387)
T ss_dssp             EEEGGGTE
T ss_pred             EEECCCCe
Confidence            88876654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.0022  Score=49.27  Aligned_cols=186  Identities=14%  Similarity=0.052  Sum_probs=109.7

Q ss_pred             eEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCCCe----eeeeeec
Q 040307           90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC-SVDTTCVIWDIDREI----LETQLVA  164 (339)
Q Consensus        90 ~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~----~~~~~~~  164 (339)
                      +|.+....|+-.++++.+...+  +.+ .     ..+.+++|++ ..+.|.-. ...+.|.-.++....    ....+..
T Consensus         4 Ll~s~~~~I~~~~l~~~~~~~~--~~~-~-----~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           4 LFFTNRHEVRKMTLDRSEYTSL--IPN-L-----RNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             EEEECBSSEEEEETTSCCCEEE--ECS-C-----SSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             EEEECCCeEEEEECCCCcceee--eCC-C-----CceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC
Confidence            3444445888889987653222  232 2     4677999997 55555544 456677766664321    1122222


Q ss_pred             cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307          165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR  242 (339)
Q Consensus       165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~  242 (339)
                      ....+..+++.  .+++..+-...+.|.+.++...........   .......++.+|..+.++.+-......|.-.++.
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~---~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC---CCCCcceEEEEcccCeEEEeccCCCcceeEeccC
Confidence            23445667775  566777767778899999987764443332   2356889999985555444432222225555554


Q ss_pred             CCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          243 FPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       243 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                        +.....+.. .-....++++.+.+.++..+-...+.|...++....
T Consensus       152 --Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         152 --GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             --SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             --CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence              333444432 335678999999875455554567788888876654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=0.0023  Score=49.14  Aligned_cols=234  Identities=9%  Similarity=-0.012  Sum_probs=129.5

Q ss_pred             ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307           32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE  109 (339)
Q Consensus        32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~  109 (339)
                      |.+|+.+.     .+.|+-..++...............+...+..|+|.+...    .++.+-. + .|+..+++...  
T Consensus         1 ~~fLl~s~-----~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~----~iywsd~~~~~I~~~~l~g~~--   69 (263)
T d1npea_           1 GTHLLFAQ-----TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK----VVYWTDISEPSIGRASLHGGE--   69 (263)
T ss_dssp             CEEEEEEE-----EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT----EEEEEETTTTEEEEEESSSCC--
T ss_pred             CCEEEEeC-----CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCC----EEEEEECCCCeEEEEEcccCC--
Confidence            34666666     5777776665444332221111123344578899988773    4444433 3 78888887665  


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC--CcEEEEEeCCC
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG--FNVFASVSGDC  187 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~  187 (339)
                      ....+....     ..+.++++....+++..+-...+.|.+.++........+.........++.++  +.++.+-...+
T Consensus        70 ~~~v~~~~~-----~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~  144 (263)
T d1npea_          70 PTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD  144 (263)
T ss_dssp             CEEEECTTC-----CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred             cEEEEEecc-----ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCC
Confidence            222333222     45778888753445555556678999999875543333333335678898883  44444433333


Q ss_pred             c--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc
Q 040307          188 S--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP  265 (339)
Q Consensus       188 ~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p  265 (339)
                      .  |.--++....... +...  .-.....+++.+ .++.|+.+......|...|+.. ......+.+ .....++++. 
T Consensus       145 ~~~I~r~~~dG~~~~~-i~~~--~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g-~~~~~v~~~-~~~P~~lav~-  217 (263)
T d1npea_         145 NPKIETSHMDGTNRRI-LAQD--NLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAVTSY-  217 (263)
T ss_dssp             SCEEEEEETTSCCCEE-EECT--TCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEEEEE-
T ss_pred             CcEEEEecCCCCCcee-eeee--cccccceEEEee-cCcEEEEEeCCCCEEEEEECCC-CCeEEEECC-CCCcEEEEEE-
Confidence            3  4444555444322 2222  234678999997 5555555543333388888864 222222332 2334577776 


Q ss_pred             CCCCeEEEEeCCCcEEEEEecCCC
Q 040307          266 LYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       266 ~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                       ++.+..+-...+.|...|...++
T Consensus       218 -~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         218 -GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTTE
T ss_pred             -CCEEEEEECCCCEEEEEECCCCc
Confidence             32455555566777777776655

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=0.0049  Score=47.22  Aligned_cols=233  Identities=7%  Similarity=0.114  Sum_probs=146.5

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEE
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRL  100 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~i  100 (339)
                      +.--+|.   .+.||.-+     ...++|++++...  ...    ....+.+|.--.|-.+.      .|+--++ .|+-
T Consensus        67 sAIMhP~---~~IiALra-----g~~LQiFnletK~--klk----s~~~~e~VvfWkWis~~------~L~lVT~taVYH  126 (327)
T d1utca2          67 SAIMNPA---SKVIALKA-----GKTLQIFNIEMKS--KMK----AHTMTDDVTFWKWISLN------TVALVTDNAVYH  126 (327)
T ss_dssp             EEEECSS---SSEEEEEE-----TTEEEEEETTTTE--EEE----EEECSSCCCEEEESSSS------EEEEECSSEEEE
T ss_pred             hhhcCCC---CcEEEEec-----CCeEEEEehhHhh--hhc----eEEcCCCcEEEEecCCC------EEEEEcCCceEE
Confidence            4446777   88999877     6799997766543  222    24456688888998765      5666655 9999


Q ss_pred             EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-------CCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307          101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-------VDTTCVIWDIDREILETQLVAHDREVYDIS  173 (339)
Q Consensus       101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~  173 (339)
                      |+++... .+...+..|.... ...|..-..++ +.++++..+       -.|.+.+|..+.. .-+.+.+|...-..+.
T Consensus       127 W~~~g~s-~P~k~fdR~~~L~-~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~  202 (327)
T d1utca2         127 WSMEGES-QPVKMFDRHSSLA-GCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK  202 (327)
T ss_dssp             EESSSSC-CCEEEEECCGGGT-TCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEEC
T ss_pred             EcccCCC-Cchhhhhhccccc-CceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEE
Confidence            9996543 5777887776432 24566667776 777766543       2467889998655 3556777776555555


Q ss_pred             ec----CCcEEEEEeC---CCcEEEEECCCCcc--------eeeE-EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307          174 WG----GFNVFASVSG---DCSVRVFDLRDKER--------STII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV  237 (339)
Q Consensus       174 ~~----~~~~l~~~~~---d~~i~i~d~~~~~~--------~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~  237 (339)
                      ..    +..+|+.+..   .+++++.++.....        ...+ +.......-..++..++ .-.+++.-+.-|. ++
T Consensus       203 ~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~-i~  280 (327)
T d1utca2         203 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGY-IH  280 (327)
T ss_dssp             CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSE-EE
T ss_pred             cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcE-EE
Confidence            54    1334444432   36788888876321        1111 22222334567788886 6677888888888 99


Q ss_pred             EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307          238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALI  282 (339)
Q Consensus       238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i  282 (339)
                      +||+.+ +.++..-+-....|..-+-+.... =+++...+|.|..
T Consensus       281 lyDleT-gt~i~~nRIs~~~iF~~a~~~~~~-Gi~~VNr~GqVl~  323 (327)
T d1utca2         281 LYDLET-GTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLS  323 (327)
T ss_dssp             EEETTT-CCEEEEEECCSSCEEEEEEETTTT-EEEEEETTSEEEE
T ss_pred             EEEccc-ccEEEEeecCCCceEEeccCCCCc-eEEEECCCCeEEE
Confidence            999998 666666555555665444444332 3444445665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.011  Score=47.85  Aligned_cols=193  Identities=10%  Similarity=-0.015  Sum_probs=115.3

Q ss_pred             CCCEEEEEe-CCCeEEEEECCCCeeeeeee-ccCCceeEEEec---CCcEEEEEeCCC------------------cEEE
Q 040307          135 DTRRVATCS-VDTTCVIWDIDREILETQLV-AHDREVYDISWG---GFNVFASVSGDC------------------SVRV  191 (339)
Q Consensus       135 ~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~d~------------------~i~i  191 (339)
                      ||++++... .+..|.+.|+++.+..+.+. .....+..++..   ...+++..+.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            577777765 57899999999998755432 233455666665   245666666532                  2567


Q ss_pred             EECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC--------------------------------------C
Q 040307          192 FDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD--------------------------------------S  233 (339)
Q Consensus       192 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------------------------------------~  233 (339)
                      +|..+.+....+...    .....+.++| +|+++++.+.+                                      +
T Consensus       178 ID~~tm~V~~QV~V~----g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS----GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EETTTTEEEEEEEES----SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EecCCceEEEEeeeC----CChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            888877754444433    3566789998 78888876643                                      2


Q ss_pred             CeEEEEecCCC--CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce----eee
Q 040307          234 NKVVVLDIRFP--TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE----LCY  307 (339)
Q Consensus       234 ~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~  307 (339)
                      . +.+-|.+..  ...+..+.. ......+.++|||..+++++..+.++.|+|++.... ...    ....+.    ...
T Consensus       253 g-V~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~-~~~----~~~~~~~~~~~e~  325 (459)
T d1fwxa2         253 G-VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA-VFY----ENADPRSAVVAEP  325 (459)
T ss_dssp             T-EEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH-HHH----SCC-GGGGEEECC
T ss_pred             C-ceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhh-hhc----ccCCccccEEeec
Confidence            2 444454431  122223332 234678999999965555666889999999975330 000    000111    112


Q ss_pred             cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307          308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV  339 (339)
Q Consensus       308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v  339 (339)
                      ........-+|...|.-+.+---|..|.-|++
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEec
Confidence            23445667788887742333447888888874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.41  E-value=0.021  Score=46.17  Aligned_cols=197  Identities=9%  Similarity=-0.007  Sum_probs=109.2

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeecc---------------------------------------CCce--eEEEecC
Q 040307          138 RVATCSVDTTCVIWDIDREILETQLVAH---------------------------------------DREV--YDISWGG  176 (339)
Q Consensus       138 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~---------------------------------------~~~v--~~~~~~~  176 (339)
                      .|.||+..|.|+|+-+.+++.++.+.-.                                       .+..  ..+++.+
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            4667888999999998887655544210                                       0011  1344433


Q ss_pred             ----CcEEEEEe-CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCC-----------------
Q 040307          177 ----FNVFASVS-GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDS-----------------  233 (339)
Q Consensus       177 ----~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~-----------------  233 (339)
                          |++++... .+.+|.+.|++..+....+... . ...+..++..+. +-.|++..+...                 
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n-~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-N-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-S-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecC-C-CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence                66666555 6788999999998855544332 2 345666665431 344666655532                 


Q ss_pred             CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC---------------cEEEEEecCCCC-----CC-
Q 040307          234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS---------------RALIWEVVGPGY-----RS-  292 (339)
Q Consensus       234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------------~v~iwd~~~~~~-----~~-  292 (339)
                      ..+.++|..+ .+...++.. .+....+.++|+| +++++.+.+.               .+.+++......     +. 
T Consensus       173 ~~~t~ID~~t-m~V~~QV~V-~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         173 NVFTAVDADK-WEVAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             EEEEEEETTT-TEEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             eEEEEEecCC-ceEEEEeee-CCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence            1145677766 333333333 3457789999999 5777766431               133333321110     00 


Q ss_pred             -------CCCCCCCcccceeeecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307          293 -------GNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV  339 (339)
Q Consensus       293 -------~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v  339 (339)
                             .+..............-......+..+|||+++++++ .+.++.++++
T Consensus       250 eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~  304 (459)
T d1fwxa2         250 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  304 (459)
T ss_dssp             EETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             EeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence                   0000000001111222233456789999999988765 7888988874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.37  E-value=0.0062  Score=49.34  Aligned_cols=236  Identities=6%  Similarity=-0.062  Sum_probs=117.3

Q ss_pred             EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-----
Q 040307           22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-----   96 (339)
Q Consensus        22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-----   96 (339)
                      ..++.++   +.+++.|+.   ....+.+||....  .......  ......-...+..+++     ++++.++.     
T Consensus        80 ~~~~~~~---g~i~v~Gg~---~~~~~~~yd~~~~--~w~~~~~--~~~~r~~~~~~~~~dG-----~v~v~GG~~~~~~  144 (387)
T d1k3ia3          80 GISMDGN---GQIVVTGGN---DAKKTSLYDSSSD--SWIPGPD--MQVARGYQSSATMSDG-----RVFTIGGSWSGGV  144 (387)
T ss_dssp             EEEECTT---SCEEEECSS---STTCEEEEEGGGT--EEEECCC--CSSCCSSCEEEECTTS-----CEEEECCCCCSSS
T ss_pred             EEEEecC---CcEEEeecC---CCcceeEecCccC--ccccccc--ccccccccceeeecCC-----ceeeecccccccc
Confidence            5567788   999998873   3468889765543  3332111  2223334567778888     78888761     


Q ss_pred             ---cEEEEeecCCcceeEEEeecCCC--ccC----CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--ec-
Q 040307           97 ---SLRLWEIHDDRTELKSLLNSNKT--SEF----SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VA-  164 (339)
Q Consensus        97 ---~i~iw~~~~~~~~~~~~~~~~~~--~~~----~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~-  164 (339)
                         .+.+||..+.++..+........  ...    ...-....+...+++.+..++..+.+.+++..+.......  .. 
T Consensus       145 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T d1k3ia3         145 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN  224 (387)
T ss_dssp             CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET
T ss_pred             ccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccC
Confidence               68999998886443322111000  000    0000011111126777777777778888887765422111  00 


Q ss_pred             ---cCC--ceeEEEec--CCcEEEEEeCC--------CcEEEEECCCCcceeeEEe-CC--CCCCCeEEEEEecCCCCeE
Q 040307          165 ---HDR--EVYDISWG--GFNVFASVSGD--------CSVRVFDLRDKERSTIIYE-NP--VQDCPLLRLEWNKADPRFM  226 (339)
Q Consensus       165 ---~~~--~v~~~~~~--~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~-~~--~~~~~v~~~~~~p~~~~~l  226 (339)
                         +..  .-.++.+.  ++++++.|+..        ....+.++........... ..  .....-.+....+ +++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-dg~i~  303 (387)
T d1k3ia3         225 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTF  303 (387)
T ss_dssp             TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEE
T ss_pred             cccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeecc-CCeEE
Confidence               111  11223332  56677777642        1334444433221111111 10  0111123444455 88899


Q ss_pred             EEEeeCCC----------eEEEEecCCCCCceEEEecCC-CC-ee-EEEeccCCCCeEEEEeC
Q 040307          227 ATVGMDSN----------KVVVLDIRFPTNPVVVLSKHE-GS-VN-GISWAPLYGRRLCSVAD  276 (339)
Q Consensus       227 ~~~~~d~~----------~i~i~d~~~~~~~~~~~~~~~-~~-v~-~~~~~p~~~~~l~~~~~  276 (339)
                      ++|+.+..          .+.+||.....  ...+.... .+ -. ...+.+|| ++|+.|+.
T Consensus       304 v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~--W~~~~~~~~~R~~Hs~a~l~~dG-~v~v~GG~  363 (387)
T d1k3ia3         304 ITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDG-RVFNGGGG  363 (387)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred             EECCcccCccCCCCcEeceEEEEECCCCe--EEECCCCCCcccceEEEEECCCC-EEEEEeCC
Confidence            98885421          27789876521  22221111 11 11 23457898 68888873

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.019  Score=43.87  Aligned_cols=229  Identities=7%  Similarity=-0.028  Sum_probs=125.2

Q ss_pred             EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc--ce
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR--TE  109 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~--~~  109 (339)
                      +|+.+.     ...|+-++++  +.....   + ......+.+++|.+...    .++.+-.+  .|.-.+++...  ..
T Consensus         3 fLl~s~-----~~~I~~~~l~--~~~~~~---~-~~~~~~~~~id~d~~~~----~lYw~D~~~~~I~~~~l~~~~~~~~   67 (266)
T d1ijqa1           3 YLFFTN-----RHEVRKMTLD--RSEYTS---L-IPNLRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVSS   67 (266)
T ss_dssp             EEEEEC-----BSSEEEEETT--SCCCEE---E-ECSCSSEEEEEEETTTT----EEEEEETTTTEEEEEEC--------
T ss_pred             EEEEEC-----CCeEEEEECC--CCccee---e-eCCCCceEEEEEEeCCC----EEEEEECCCCEEEEEEecCCCCCcc
Confidence            455555     4568775554  333332   1 34455678999998773    44444333  66655654422  11


Q ss_pred             eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe--CC
Q 040307          110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVS--GD  186 (339)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~d  186 (339)
                      ....+....     ..+.++++.+..+++..+-...+.|.+.++........+.........++.+ ...+|....  ..
T Consensus        68 ~~~~~~~~~-----~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~  142 (266)
T d1ijqa1          68 YDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP  142 (266)
T ss_dssp             CEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             eEEEEeCCC-----CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC
Confidence            111222211     3455777765455666665667899999997665444455455667889888 333444333  23


Q ss_pred             CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC--CCCeeEEEec
Q 040307          187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--EGSVNGISWA  264 (339)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~  264 (339)
                      +.|.-.++....... +...  .-.....+++.+ .++.|+.+......|...|+.... ........  .....++++.
T Consensus       143 ~~I~r~~~dGs~~~~-l~~~--~~~~p~gl~iD~-~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav~  217 (266)
T d1ijqa1         143 AKIKKGGLNGVDIYS-LVTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF  217 (266)
T ss_dssp             CEEEEEETTSCCEEE-EECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE
T ss_pred             cceeEeccCCCceec-cccc--ccceeeEEEeec-cccEEEEecCCcCEEEEEECCCCC-EEEEEeCCCcccccEEEEEE
Confidence            456666665544322 2222  235678999998 555555554433338888886422 22222222  2345567776


Q ss_pred             cCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          265 PLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       265 p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      . + .+..+-..++.|.-.+...+.
T Consensus       218 ~-~-~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         218 E-D-KVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             T-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             C-C-EEEEEECCCCeEEEEECCCCc
Confidence            3 2 455555567777777766554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.046  Score=41.78  Aligned_cols=250  Identities=9%  Similarity=0.142  Sum_probs=147.8

Q ss_pred             CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCC
Q 040307           45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFS  123 (339)
Q Consensus        45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~  123 (339)
                      ...|.|.|+.......+.    ..    .-.+.--+|..     ++||.-++ +++++|+++.+  .+..+.-.      
T Consensus        44 ~~~VvIidl~n~~~~~Rr----pi----~AdsAIMhP~~-----~IiALrag~~LQiFnletK~--klks~~~~------  102 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRR----PI----SADSAIMNPAS-----KVIALKAGKTLQIFNIEMKS--KMKAHTMT------  102 (327)
T ss_dssp             EEEEEEEETTSTTSCEEE----EC----CCSEEEECSSS-----SEEEEEETTEEEEEETTTTE--EEEEEECS------
T ss_pred             CceEEEEECCCCCcceec----cc----chhhhhcCCCC-----cEEEEecCCeEEEEehhHhh--hhceEEcC------
Confidence            567888665543322221    11    22344567888     88888666 99999999987  55554443      


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccC----CceeEEEec-CCcEEEEEe---C----CCcEE
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHD----REVYDISWG-GFNVFASVS---G----DCSVR  190 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~----~~v~~~~~~-~~~~l~~~~---~----d~~i~  190 (339)
                      .+|.--.|-  +.+.|+..+ +..|+-|+++.. .+.+.+..|.    ..|-.-..+ +.++++..+   .    .|.+.
T Consensus       103 e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQ  179 (327)
T d1utca2         103 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ  179 (327)
T ss_dssp             SCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEE
Confidence            467778886  556666655 468999999543 3555555443    234444444 566665443   1    36788


Q ss_pred             EEECCCCcceeeEEeCCCCCCCeEEEEEe--cCCCCeEEEEeeC--CCeEEEEecCCCC---Cce--EEEe------cCC
Q 040307          191 VFDLRDKERSTIIYENPVQDCPLLRLEWN--KADPRFMATVGMD--SNKVVVLDIRFPT---NPV--VVLS------KHE  255 (339)
Q Consensus       191 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~d--~~~i~i~d~~~~~---~~~--~~~~------~~~  255 (339)
                      +|.......  ...++  |......+...  +....+++.+...  +.+++|.++....   .+.  +...      .-.
T Consensus       180 LYS~er~~s--Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~  255 (327)
T d1utca2         180 LYSVDRKVS--QPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  255 (327)
T ss_dssp             EEETTTTEE--EEECC--SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTT
T ss_pred             EEEeccCcC--ccccc--eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccC
Confidence            888876642  22222  32222222221  1111233333322  1248999886532   111  1111      112


Q ss_pred             CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeE
Q 040307          256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKL  334 (339)
Q Consensus       256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v  334 (339)
                      +---++..++.. .++..-+.-|.+.+||++++.             ++ ...-....|...+-+.....+++...+|.|
T Consensus       256 DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt-------------~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         256 DFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT-------------CIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             CCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             CcEEEEEeeccC-CEEEEEecCcEEEEEEccccc-------------EEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence            344578888887 489999999999999999998             44 333345667666666666678888888886


Q ss_pred             EE
Q 040307          335 QL  336 (339)
Q Consensus       335 ~~  336 (339)
                      ..
T Consensus       322 l~  323 (327)
T d1utca2         322 LS  323 (327)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.95  E-value=0.059  Score=42.62  Aligned_cols=187  Identities=13%  Similarity=0.056  Sum_probs=100.6

Q ss_pred             EEEEcCCCCCEEEEEeC------------CCeEEEEECCCCeee-eee--ecc-----CCceeEEEec---CCc-EEEEE
Q 040307          128 SFDWAGFDTRRVATCSV------------DTTCVIWDIDREILE-TQL--VAH-----DREVYDISWG---GFN-VFASV  183 (339)
Q Consensus       128 ~~~~~~~~~~~l~~~~~------------d~~v~i~d~~~~~~~-~~~--~~~-----~~~v~~~~~~---~~~-~l~~~  183 (339)
                      +|...| ++..+++++.            .|.|.++|+.+.+.. ..+  .+.     .-....+...   ++. +|++.
T Consensus        39 Di~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          39 DLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             EEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             eEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            566666 6666665542            489999998765421 122  111     1123444442   333 44444


Q ss_pred             e---CCCcEEEEECCCCcce-eeEEeC-CCCCCCeEEEEEecCCCCeEEEEee--C-------------CCeEEEEecCC
Q 040307          184 S---GDCSVRVFDLRDKERS-TIIYEN-PVQDCPLLRLEWNKADPRFMATVGM--D-------------SNKVVVLDIRF  243 (339)
Q Consensus       184 ~---~d~~i~i~d~~~~~~~-~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~--d-------------~~~i~i~d~~~  243 (339)
                      .   ...+|.+|++...... ...... ........+++... ++.++++-..  .             .. ..+|....
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~-g~v~~~~~  195 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSP  195 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCC-EEEEEECS
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCc-eeEEEEcC
Confidence            3   3467888887654422 221111 11234578888886 7777776211  0             12 34444332


Q ss_pred             CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307          244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL  323 (339)
Q Consensus       244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  323 (339)
                       +. ...+...-...+.|+++|+++.++++-+..+.|+.|++....          .........-....-.+.+.+.+.
T Consensus       196 -~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~----------~l~~~~~~~l~~~pDNi~~d~~~g  263 (340)
T d1v04a_         196 -ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW----------TLTPLRVLSFDTLVDNISVDPVTG  263 (340)
T ss_dssp             -SC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS----------CEEEEEEEECSSEEEEEEECTTTC
T ss_pred             -Cc-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc----------ccceEEEecCCCCCCccEEecCCC
Confidence             22 233333345689999999986556666678899999998654          111222223345566777776433


Q ss_pred             ceEEEe
Q 040307          324 DWIAIA  329 (339)
Q Consensus       324 ~l~~~~  329 (339)
                      .+.+++
T Consensus       264 ~lwva~  269 (340)
T d1v04a_         264 DLWVGC  269 (340)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            344443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.45  E-value=0.22  Score=42.44  Aligned_cols=55  Identities=9%  Similarity=0.090  Sum_probs=36.3

Q ss_pred             CeEEEEECCCCeeeeeeeccCCcee-----------EEEecC--CcEEEEEeCCCcEEEEECCCCcce
Q 040307          146 TTCVIWDIDREILETQLVAHDREVY-----------DISWGG--FNVFASVSGDCSVRVFDLRDKERS  200 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~-----------~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~  200 (339)
                      ..+...|+++++.+..++.....+.           .+....  ...++.++.+|.+.++|..+++..
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            4677889999998777764332222           222221  235678889999999998888743

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.16  E-value=0.25  Score=40.28  Aligned_cols=249  Identities=13%  Similarity=0.076  Sum_probs=123.7

Q ss_pred             eeEEEeeecCCcccEEEEeee-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe----
Q 040307           20 ISTVAWSVRHDRKSRLAVGSF-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS----   94 (339)
Q Consensus        20 v~~i~~sp~~~~~~~la~g~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~----   94 (339)
                      +..+++||+   ++++|.+-. .+...-.|++  ++..++++... .+  . ......+.|.+++.    .++.+.    
T Consensus       127 ~~~~~~Spd---~~~la~s~d~~G~e~~~l~v--~Dl~tg~~~~~-~i--~-~~~~~~~~W~~D~~----~~~Y~~~~~~  193 (430)
T d1qfma1         127 LRGYAFSED---GEYFAYGLSASGSDWVTIKF--MKVDGAKELPD-VL--E-RVKFSCMAWTHDGK----GMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEECTT---SSEEEEEEEETTCSCEEEEE--EETTTTEEEEE-EE--E-EECSCCEEECTTSS----EEEEEECCCC
T ss_pred             ecceEecCC---CCEEEEEeccccCchheeEE--eccCcceeccc-cc--c-cccccceEEcCCCC----EEEEEEeccc
Confidence            445678899   999987653 2223345677  55555555431 11  1 11235789999993    343332    


Q ss_pred             ----------CC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCe--EEEEECCCC
Q 040307           95 ----------GD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTT--CVIWDIDRE  156 (339)
Q Consensus        95 ----------~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~--v~i~d~~~~  156 (339)
                                ..   .|..+.+.+........+.....   ...+..+..++ ++++++....   +..  +.+.|+...
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~---~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~  269 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE---PKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQE  269 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC---TTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             cCcccccccccCCcceEEEEECCCCccccccccccccC---CceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCc
Confidence                      11   57777777765444444443221   02355666776 8887764332   333  444454332


Q ss_pred             e--------eeeeeeccCCceeEEEecCCcEEEEEeC---CCcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCC
Q 040307          157 I--------LETQLVAHDREVYDISWGGFNVFASVSG---DCSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADP  223 (339)
Q Consensus       157 ~--------~~~~~~~~~~~v~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~  223 (339)
                      .        ....+........-+....+.+++....   ++.|...++......  ..+...  +...+..-.+.. .+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~--~~~~~~~~~~~~-~~  346 (430)
T d1qfma1         270 SNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE--HEKDVLEWVACV-RS  346 (430)
T ss_dssp             SSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC--CSSCEEEEEEEE-TT
T ss_pred             ccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecc--cCcceeeeEEEE-EC
Confidence            1        1111222222222222223444444433   356666777665432  222222  333444333332 44


Q ss_pred             CeEEEEe-eCCC-eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCC
Q 040307          224 RFMATVG-MDSN-KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPG  289 (339)
Q Consensus       224 ~~l~~~~-~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~  289 (339)
                      .+|+..- .++. .|++++... +..........+.|..+...++.+.+.++-+   .=.++.-+|+.+++
T Consensus       347 ~~lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         347 NFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEcCCEeEEEEEECCC-CcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            5555554 4433 588899876 3333333333445666665565543444333   22567777777665

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.01  E-value=0.25  Score=38.93  Aligned_cols=189  Identities=8%  Similarity=0.097  Sum_probs=102.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-------CCcEEEEEe-CC---CcEEEEECCCCcceeeE
Q 040307          135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-------GFNVFASVS-GD---CSVRVFDLRDKERSTII  203 (339)
Q Consensus       135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-------~~~~l~~~~-~d---~~i~i~d~~~~~~~~~~  203 (339)
                      ...+++.....+-|++||++ |+.+..+.  .+.++.|..-       ...-++.++ ++   ..|.+|.+.........
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            44677777778789999995 77666653  2345544432       122344444 32   25777877543211111


Q ss_pred             EeCC-----CCCCCeEEEEE--ecCCCCeEEE-EeeCCCeEEEEecCCCC------CceEEEecCCCCeeEEEeccCCCC
Q 040307          204 YENP-----VQDCPLLRLEW--NKADPRFMAT-VGMDSNKVVVLDIRFPT------NPVVVLSKHEGSVNGISWAPLYGR  269 (339)
Q Consensus       204 ~~~~-----~~~~~v~~~~~--~p~~~~~l~~-~~~d~~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~  269 (339)
                      ....     .....+..+++  +|.++.+.+. ...++. +..|.+....      ..+..+.. ...+-+|.+.+.. .
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~-v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~-~  192 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGE-FEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEY-G  192 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTT-T
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCce-EEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCC-C
Confidence            1110     01124556666  6656665444 444555 8888764322      22334443 4578899999988 5


Q ss_pred             eEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-ee---cccceeEEEEecC--CCC-ceEEEe-cCCeEEEEe
Q 040307          270 RLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CY---QSMAEINVVRWSP--LEL-DWIAIA-FVNKLQLLK  338 (339)
Q Consensus       270 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~i~~~~~~p--~~~-~l~~~~-~d~~v~~w~  338 (339)
                      .|..+-++..++.+++.....         ....+. ..   ...+.+..|+.-.  ++. +|++++ .+++..+|+
T Consensus       193 ~LyisEE~~Giw~~~a~~~~~---------~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEEEEETTTEEEEEESSTTSC---------SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             cEEEecCccceEEEEeccCCC---------ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            888888776554444443220         001111 11   1244566666443  333 566655 678888886

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.33  Score=38.66  Aligned_cols=140  Identities=6%  Similarity=0.019  Sum_probs=74.1

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-Cc
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-DS   97 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~~   97 (339)
                      .|..++|+-+     .|++..     ++.+..++...-......     .....++..+.++|..      +++... +.
T Consensus        88 ~v~~vafs~d-----~l~v~~-----~~~l~~~~~~~l~~~~~~-----~~~~~~~~~~~~~p~~------~~l~~~~~~  146 (381)
T d1xipa_          88 DVIFVCFHGD-----QVLVST-----RNALYSLDLEELSEFRTV-----TSFEKPVFQLKNVNNT------LVILNSVND  146 (381)
T ss_dssp             TEEEEEEETT-----EEEEEE-----SSEEEEEESSSTTCEEEE-----EECSSCEEEEEECSSE------EEEEETTSE
T ss_pred             CeEEEEeeCC-----EEEEEe-----CCCEEEEEeecccccccc-----ccccccccceecCCce------eEEEecCCC
Confidence            6888999766     466666     567777555433222111     2345678889998865      444444 48


Q ss_pred             EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE-EECCCCeeeeeeeccCCceeEEEec-
Q 040307           98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI-WDIDREILETQLVAHDREVYDISWG-  175 (339)
Q Consensus        98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i-~d~~~~~~~~~~~~~~~~v~~~~~~-  175 (339)
                      +.++++.+.+...+.  .+-........+.+++|++ .+..++++..++ ..+ -++.....+.........|.+|.|- 
T Consensus       147 ~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~  222 (381)
T d1xipa_         147 LSALDLRTKSTKQLA--QNVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILS  222 (381)
T ss_dssp             EEEEETTTCCEEEEE--ESEEEEEECSSEEEEEETT-SCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred             EEEEEeccCcccccc--CCcceEEecCCceEEEEeC-CcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEec
Confidence            888898887632221  1100000014577788876 666676663322 111 1222111111111234568899998 


Q ss_pred             CCcEEEEE
Q 040307          176 GFNVFASV  183 (339)
Q Consensus       176 ~~~~l~~~  183 (339)
                      +..++++-
T Consensus       223 ~~~F~vvy  230 (381)
T d1xipa_         223 PQDFLAVF  230 (381)
T ss_dssp             SSEEEEEE
T ss_pred             CceEEEEE
Confidence            44444433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.61  E-value=0.29  Score=41.76  Aligned_cols=51  Identities=10%  Similarity=-0.075  Sum_probs=32.9

Q ss_pred             EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307          236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG  289 (339)
Q Consensus       236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~  289 (339)
                      |.-+|+.+ ++.+-+...+. ++.+-..+..+ .++++|+.||.++-+|.++++
T Consensus       468 l~AiD~~T-G~i~W~~~~~~-p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         468 LRAMDPVS-GKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEECTTT-CCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEcCCC-CcEEeecCCCC-CCccceeEEcC-CeEEEeCCCCeEEEEECCCCc
Confidence            66677766 44444444322 22222233455 488889999999999999999

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.42  Score=36.06  Aligned_cols=231  Identities=12%  Similarity=-0.020  Sum_probs=100.9

Q ss_pred             EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----C------cEEEEe
Q 040307           34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----D------SLRLWE  102 (339)
Q Consensus        34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----~------~i~iw~  102 (339)
                      +.+.|+.....-..+.+||..  +........+  .....=.++.. -++     ++++.|+     +      .+.+||
T Consensus         7 iyv~GG~~~~~~~~~~~yd~~--t~~W~~~~~~--p~~R~~~~~~~-~~~-----~iyv~GG~~~~~~~~~~~~~~~~yd   76 (288)
T d1zgka1           7 IYTAGGYFRQSLSYLEAYNPS--NGTWLRLADL--QVPRSGLAGCV-VGG-----LLYAVGGRNNSPDGNTDSSALDCYN   76 (288)
T ss_dssp             EEEECCBSSSBCCCEEEEETT--TTEEEECCCC--SSCCBSCEEEE-ETT-----EEEEECCEEEETTEEEECCCEEEEE
T ss_pred             EEEECCcCCCCCceEEEEECC--CCeEEECCCC--CCccceeEEEE-ECC-----EEEEEeCcccCCCCccccchhhhcc
Confidence            336666433334466775544  4444331122  11111122222 245     6777665     1      567788


Q ss_pred             ecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe-----EEEEECCCCeeeeeeec-cCCceeEEEecC
Q 040307          103 IHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT-----CVIWDIDREILETQLVA-HDREVYDISWGG  176 (339)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-----v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~  176 (339)
                      ..+.++.....+....     ..-.+..+   +++.++.++.++.     +..+|..+..-...... ....-..+...+
T Consensus        77 ~~~~~w~~~~~~p~~r-----~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  148 (288)
T d1zgka1          77 PMTNQWSPCAPMSVPR-----NRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN  148 (288)
T ss_dssp             TTTTEEEECCCCSSCC-----BTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             ccccccccccccccee-----cceecccc---ceeeEEecceecccccceeeeeccccCccccccccccccccceeeeee
Confidence            7776644333222111     11122222   5566666654443     34466655442211110 000111222234


Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCCCCc
Q 040307          177 FNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFPTNP  247 (339)
Q Consensus       177 ~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~~~~  247 (339)
                      +.+++.|+.+     ..+..||....+........  ......++...  .+.+++.|+.++.    ....+|....  .
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~--~  222 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN--TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE--T  222 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--E
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccc--cccccccccce--eeeEEEecCccccccccceeeeeecce--e
Confidence            5666666543     45778887765422211111  11111233333  5566666655532    2667776542  1


Q ss_pred             eEEEecC-CCCeeEEEeccCCCCeEEEEeCCC-----cEEEEEecCCC
Q 040307          248 VVVLSKH-EGSVNGISWAPLYGRRLCSVADDS-----RALIWEVVGPG  289 (339)
Q Consensus       248 ~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg-----~v~iwd~~~~~  289 (339)
                      ...+... ......-+...++ ++++.|+.++     .+.+||+....
T Consensus       223 ~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         223 WTFVAPMKHRRSALGITVHQG-RIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEECCCCSSCCBSCEEEEETT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eecccCccCcccceEEEEECC-EEEEEecCCCCeecceEEEEECCCCE
Confidence            2222111 1111112222355 5777776543     36677777643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.82  E-value=0.67  Score=36.37  Aligned_cols=204  Identities=6%  Similarity=0.067  Sum_probs=109.5

Q ss_pred             cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC----CCCCCCCCeEEEeC-----C-cEEEEe
Q 040307           33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP----SEETLNPDIVATSG-----D-SLRLWE  102 (339)
Q Consensus        33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~~~~~~la~~~-----~-~i~iw~  102 (339)
                      +.|+.|+.   +.+-|++|+++  +.++..      -..+.++.|..-.    .+..   .-++.++     . +|.+|.
T Consensus        40 ~SlI~gTd---K~~Gl~vYdL~--G~~l~~------~~~Gr~NNVDvr~~~~l~~~~---~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          40 NSKLITTN---KKSGLAVYSLE--GKMLHS------YHTGKLNNVDIRYDFPLNGKK---VDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             GCEEEEEE---TTSCCEEEETT--CCEEEE------CCSSCEEEEEEEEEEEETTEE---EEEEEEEECCTTTCEEEEEE
T ss_pred             ccEEEEEc---CcCCEEEEcCC--CcEEEe------cccCCcCccccccccccCCcc---eEEEEEeCCcCcceeEEEEE
Confidence            34445552   56679998764  333332      2235566555432    2210   2334443     1 688888


Q ss_pred             ecCCcceeEEEeecCCCc--cCCCCEEEEEE--cCCCCC-EEEEEeCCCeEEEEECC---CC----eeeeeeeccCCcee
Q 040307          103 IHDDRTELKSLLNSNKTS--EFSSAITSFDW--AGFDTR-RVATCSVDTTCVIWDID---RE----ILETQLVAHDREVY  170 (339)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~~~~~~-~l~~~~~d~~v~i~d~~---~~----~~~~~~~~~~~~v~  170 (339)
                      +..... .+..+......  .....+..+++  +|.++. +++....+|.+..|.+.   .+    +.++.+. -...+.
T Consensus       106 id~~~~-~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~E  183 (353)
T d1h6la_         106 IDGKNG-TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTE  183 (353)
T ss_dssp             EETTTT-EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEE
T ss_pred             ecCccc-ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccc
Confidence            864431 22222221100  00124566666  664554 45666778999888763   22    2444553 445788


Q ss_pred             EEEec-CCcEEEEEeCCCcEEEEECCCC--cceeeEEe--CCCCCCCeEEEEEecC-C-CCeEEEEeeCCCeEEEEecCC
Q 040307          171 DISWG-GFNVFASVSGDCSVRVFDLRDK--ERSTIIYE--NPVQDCPLLRLEWNKA-D-PRFMATVGMDSNKVVVLDIRF  243 (339)
Q Consensus       171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~--~~~~~~~v~~~~~~p~-~-~~~l~~~~~d~~~i~i~d~~~  243 (339)
                      .+.+. ....|..+-.+.-|..++....  .....+..  ...-...+-.++.-.. + ..+|++.+....+..+||...
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            88888 5677888877776666665422  22222211  1123456777776531 2 236655555544599999887


Q ss_pred             CCCceEEEe
Q 040307          244 PTNPVVVLS  252 (339)
Q Consensus       244 ~~~~~~~~~  252 (339)
                      +...+..+.
T Consensus       264 ~~~~~g~F~  272 (353)
T d1h6la_         264 QNKYVADFQ  272 (353)
T ss_dssp             TCCEEEEEE
T ss_pred             CccccceEE
Confidence            666666654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.48  E-value=1.2  Score=37.69  Aligned_cols=27  Identities=4%  Similarity=-0.021  Sum_probs=22.3

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307          137 RRVATCSVDTTCVIWDIDREILETQLV  163 (339)
Q Consensus       137 ~~l~~~~~d~~v~i~d~~~~~~~~~~~  163 (339)
                      ..++.++.+|.+.++|..+++.+....
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~  354 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKN  354 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eeeeeccccceeEEecccccccccccc
Confidence            467788899999999999999776554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.92  Score=36.00  Aligned_cols=136  Identities=7%  Similarity=-0.003  Sum_probs=79.3

Q ss_pred             CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecC---------CCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307           19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFN---------PETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD   89 (339)
Q Consensus        19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~---------~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~   89 (339)
                      ...-++.++.   ..++++|+     ...+.|....         .....+..  ...   -..|..++|+.+      .
T Consensus        38 ~~~LLAVsn~---~GLl~aa~-----~~~l~V~~t~~l~~~~~~~~~~~~~~~--~~~---ip~v~~vafs~d------~   98 (381)
T d1xipa_          38 SLQNLDISNS---KSLFVAAS-----GSKAVVGELQLLRDHITSDSTPLTFKW--EKE---IPDVIFVCFHGD------Q   98 (381)
T ss_dssp             CCBCEEEETT---TTEEEEEE-----TTEEEEEEHHHHHHHHHSSSCCCCCSE--EEE---CTTEEEEEEETT------E
T ss_pred             ccceEEEeCC---CCEEEEEC-----CCEEEEEEHHHHHHHhhccCCCCccee--ccC---CCCeEEEEeeCC------E
Confidence            4567788887   66777777     4567775522         11222332  221   125889999754      3


Q ss_pred             eEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-----c
Q 040307           90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-----A  164 (339)
Q Consensus        90 ~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~  164 (339)
                      +++..++.+..++...-.  .......-.     .++..+.++|   ..++....++.+.++++..++......     .
T Consensus        99 l~v~~~~~l~~~~~~~l~--~~~~~~~~~-----~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~  168 (381)
T d1xipa_          99 VLVSTRNALYSLDLEELS--EFRTVTSFE-----KPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFD  168 (381)
T ss_dssp             EEEEESSEEEEEESSSTT--CEEEEEECS-----SCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEE
T ss_pred             EEEEeCCCEEEEEeeccc--ccccccccc-----ccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEE
Confidence            444444577777776543  222222222     5788898886   456777788999999998775332211     1


Q ss_pred             cCCceeEEEec-CCcEEEEE
Q 040307          165 HDREVYDISWG-GFNVFASV  183 (339)
Q Consensus       165 ~~~~v~~~~~~-~~~~l~~~  183 (339)
                      -.+.+.+++|+ .+..++++
T Consensus       169 ~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         169 VTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ECSSEEEEEETTSCEEEEEE
T ss_pred             ecCCceEEEEeCCcEEEEEe
Confidence            22456667777 34455554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.16  E-value=1.4  Score=37.16  Aligned_cols=83  Identities=4%  Similarity=-0.054  Sum_probs=47.8

Q ss_pred             CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCC-eeEEEecc
Q 040307          187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGS-VNGISWAP  265 (339)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~p  265 (339)
                      |.|.-+|+.+++..=.....    .+...-... ..+.++++|+.|+. ++.+|.++ ++.+-++...... -.-+.+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~----~~~~gg~l~-TagglVF~G~~dg~-l~A~Da~t-Ge~LW~~~l~~~~~~~P~ty~~  510 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP----THWNGGTLS-TAGNLVFQGTAAGQ-MHAYSADK-GEALWQFEAQSGIVAAPMTFEL  510 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES----SSCCCCEEE-ETTTEEEEECTTSE-EEEEETTT-CCEEEEEECSSCCCSCCEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCC----CCCCCceeE-ECCCEEEEECCCCc-EEEEECCC-CcEeEEEECCCCccccCEEEEE
Confidence            34566676666533222211    111111222 25678888999998 99999998 6667666653321 12356667


Q ss_pred             CCCCeEEEEeC
Q 040307          266 LYGRRLCSVAD  276 (339)
Q Consensus       266 ~~~~~l~~~~~  276 (339)
                      +|.++|+....
T Consensus       511 dGkqyv~v~aG  521 (560)
T d1kv9a2         511 AGRQYVAIMAG  521 (560)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEeC
Confidence            88667665543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.53  E-value=1.8  Score=36.47  Aligned_cols=53  Identities=9%  Similarity=0.021  Sum_probs=36.7

Q ss_pred             CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC-CeeEEEeccCCCCeEEEEeC
Q 040307          222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG-SVNGISWAPLYGRRLCSVAD  276 (339)
Q Consensus       222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~  276 (339)
                      .+.++++++.|+. ++.+|.++ ++.+-++..... .-.-+.|..+|.+++++...
T Consensus       474 agglVf~G~~dg~-l~A~Da~t-Ge~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         474 KGGLVWYATLDGY-LKALDNKD-GKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TTTEEEEECTTSE-EEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCEEEEECCCCe-EEEEECCC-CcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence            4667888999998 99999998 666766654322 22236777788767766543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.82  E-value=2.4  Score=35.90  Aligned_cols=55  Identities=11%  Similarity=-0.066  Sum_probs=35.7

Q ss_pred             CeEEEEECCCCeeeeeeeccCC---------ceeEEEe--cC---CcEEEEEeCCCcEEEEECCCCcce
Q 040307          146 TTCVIWDIDREILETQLVAHDR---------EVYDISW--GG---FNVFASVSGDCSVRVFDLRDKERS  200 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~---------~v~~~~~--~~---~~~l~~~~~d~~i~i~d~~~~~~~  200 (339)
                      ..|.-.|+++++.+..++....         ...-+..  .+   ...++....+|.+.++|-.+++..
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence            4577789999997776653221         1111221  12   246778889999999999888744

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=1.8  Score=32.25  Aligned_cols=134  Identities=7%  Similarity=-0.032  Sum_probs=62.8

Q ss_pred             cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---------CCeEEEEECCCCeeee--eeecc
Q 040307           97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---------DTTCVIWDIDREILET--QLVAH  165 (339)
Q Consensus        97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------d~~v~i~d~~~~~~~~--~~~~~  165 (339)
                      .+.+||+.++++..+..+....     ..- ++...  ++.+++.|+.         -..+.+||..+.+-..  .+...
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R-----~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~   91 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPR-----SGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP   91 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC-----BSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC
T ss_pred             eEEEEECCCCeEEECCCCCCcc-----cee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccce
Confidence            7889999998765554443322     111 22222  5677777653         2356788887654222  11100


Q ss_pred             CCceeEEEecCCcEEEEEeCCCc-----EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eE
Q 040307          166 DREVYDISWGGFNVFASVSGDCS-----VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KV  236 (339)
Q Consensus       166 ~~~v~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i  236 (339)
                      ...- .++..++.+++.++.++.     ...+|..+.......... ...... .+...  ...+++.|+.+..    .+
T Consensus        92 r~~~-~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~-~~~~~--~~~~~~~GG~~~~~~~~~~  166 (288)
T d1zgka1          92 RNRI-GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-TRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSA  166 (288)
T ss_dssp             CBTC-EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-SCCBSC-EEEEE--TTEEEEECCBCSSCBCCCE
T ss_pred             ecce-eccccceeeEEecceecccccceeeeeccccCccccccccc-cccccc-eeeee--eecceEecCcccccccceE
Confidence            1111 222225666665554433     444666655422111111 111111 22222  4456666655432    26


Q ss_pred             EEEecCC
Q 040307          237 VVLDIRF  243 (339)
Q Consensus       237 ~i~d~~~  243 (339)
                      ..||...
T Consensus       167 ~~~d~~~  173 (288)
T d1zgka1         167 ECYYPER  173 (288)
T ss_dssp             EEEETTT
T ss_pred             EEeeccc
Confidence            7777754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.69  E-value=3.2  Score=34.78  Aligned_cols=55  Identities=9%  Similarity=0.067  Sum_probs=35.6

Q ss_pred             CeEEEEECCCCeeeeeeeccCCcee-----------EEEec--CCcEEEEEeCCCcEEEEECCCCcce
Q 040307          146 TTCVIWDIDREILETQLVAHDREVY-----------DISWG--GFNVFASVSGDCSVRVFDLRDKERS  200 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~-----------~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~  200 (339)
                      ..|.-.|+++++....++.....+.           .+...  +...++.+..+|.+.++|..+++..
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence            4577778899987766653322222           22222  1346777888999999999888744

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.39  E-value=4.3  Score=32.51  Aligned_cols=197  Identities=11%  Similarity=0.074  Sum_probs=100.5

Q ss_pred             ceEEEEcCCCCCCCCCeEEEe----C-C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-
Q 040307           74 PTNIAFFPSEETLNPDIVATS----G-D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-  145 (339)
Q Consensus        74 v~~l~~~~~~~~~~~~~la~~----~-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-  145 (339)
                      +...++||++     +++|.+    | +  .++++|+.+++... ..+..       .....+.|.+ +++.|+....+ 
T Consensus       127 ~~~~~~Spd~-----~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~~-------~~~~~~~W~~-D~~~~~Y~~~~~  192 (430)
T d1qfma1         127 LRGYAFSEDG-----EYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLER-------VKFSCMAWTH-DGKGMFYNAYPQ  192 (430)
T ss_dssp             EEEEEECTTS-----SEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEEE-------ECSCCEEECT-TSSEEEEEECCC
T ss_pred             ecceEecCCC-----CEEEEEeccccCchheeEEeccCcceecc-ccccc-------ccccceEEcC-CCCEEEEEEecc
Confidence            4566889999     677643    2 3  89999999997322 22332       1224688997 77777654432 


Q ss_pred             ---------------CeEEEEECCCCee--eeeeeccC--CceeEEEec-CCcEEEEEeC---CCc--EEEEECCCCcce
Q 040307          146 ---------------TTCVIWDIDREIL--ETQLVAHD--REVYDISWG-GFNVFASVSG---DCS--VRVFDLRDKERS  200 (339)
Q Consensus       146 ---------------~~v~i~d~~~~~~--~~~~~~~~--~~v~~~~~~-~~~~l~~~~~---d~~--i~i~d~~~~~~~  200 (339)
                                     ..|..+.+.+...  ...+....  ..+..+..+ ++++++....   +..  +.+.|+......
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                           2688888876542  22333222  234556666 6776654322   233  444455433211


Q ss_pred             -------eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC---CCeEEEEecCCCCCc-eEEEe-cCCCCeeEEEeccCCC
Q 040307          201 -------TIIYENPVQDCPLLRLEWNKADPRFMATVGMD---SNKVVVLDIRFPTNP-VVVLS-KHEGSVNGISWAPLYG  268 (339)
Q Consensus       201 -------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---~~~i~i~d~~~~~~~-~~~~~-~~~~~v~~~~~~p~~~  268 (339)
                             ..+...  ......-+...  ++.+++....+   +. |...++...... ...+. .+...+..-.+...+.
T Consensus       273 ~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~Tn~~a~~~~-L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~  347 (430)
T d1qfma1         273 ITGILKWVKLIDN--FEGEYDYVTNE--GTVFTFKTNRHSPNYR-LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN  347 (430)
T ss_dssp             SCSSCCCEEEECS--SSSCEEEEEEE--TTEEEEEECTTCTTCE-EEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred             cccccceeEeecc--cccceEEEecC--CceeecccCcccccce-eEEecCCCCccccceEEecccCcceeeeEEEEECC
Confidence                   111111  12223322221  33343333322   33 666666653321 23333 3444455444444442


Q ss_pred             CeEEEEeCCC--cEEEEEecCCC
Q 040307          269 RRLCSVADDS--RALIWEVVGPG  289 (339)
Q Consensus       269 ~~l~~~~~dg--~v~iwd~~~~~  289 (339)
                      .+++....++  .|+++++..+.
T Consensus       348 ~lvl~~~~~~~~~l~v~~~~~~~  370 (430)
T d1qfma1         348 FLVLCYLHDVKNTLQLHDLATGA  370 (430)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCC
T ss_pred             EEEEEEEcCCEeEEEEEECCCCc
Confidence            3444555565  57788877665

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.07  E-value=4.8  Score=32.58  Aligned_cols=54  Identities=9%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-----CCCCCCeEEEEEec
Q 040307          167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-----PVQDCPLLRLEWNK  220 (339)
Q Consensus       167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~p  220 (339)
                      ...++|+|. ++++|++--..|.|++++..++.........     ...+.....|+++|
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            456899999 6777766545799999988776633322111     12345678999998

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.72  E-value=2.1  Score=36.24  Aligned_cols=82  Identities=11%  Similarity=0.116  Sum_probs=50.2

Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |.|.-+|+.+++.+.+...+ .++..-..+ .+.++++++.||.++.+|.++++.+=...........  -+.|..+..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~--P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP--PITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC--CEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCcccc--CEEEEECCEE
Confidence            56888888888877776533 233221223 4778888999999999999999955443332111122  2455443345


Q ss_pred             eEEEEe
Q 040307          225 FMATVG  230 (339)
Q Consensus       225 ~l~~~~  230 (339)
                      |+++..
T Consensus       543 Yv~i~a  548 (582)
T d1flga_         543 YLGVTV  548 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.65  E-value=5.4  Score=29.52  Aligned_cols=207  Identities=13%  Similarity=0.110  Sum_probs=100.5

Q ss_pred             CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCC
Q 040307           46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSA  125 (339)
Q Consensus        46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  125 (339)
                      -+|+.|-.+........    .......|..|+--..      ..++.-.+.|..|-.+...  .+-.-....     ..
T Consensus         4 ~sv~~WG~~~~~~~~~~----~~~~~~~i~~va~G~~------h~~al~dG~v~~wG~N~~G--QlG~~~~~~-----~~   66 (273)
T d1jtdb_           4 TSVVAWGGNNDWGEATV----PAEAQSGVDAIAGGYF------HGLALKGGKVLGWGANLNG--QLTMPAATQ-----SG   66 (273)
T ss_dssp             SEEEEESSCCSSSTTCC----CGGGSSSEEEEEECSS------EEEEEETTEEEEEECCTTS--TTSCCGGGG-----SC
T ss_pred             CEEEEECCCCCCCceec----cccCCCCcEEEEccCC------EEEEEECCEEEEEeCCCCC--ceeeeeccc-----cc
Confidence            47888765554443332    2333456777766433      3444433388888765542  111111111     44


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEe
Q 040307          126 ITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYE  205 (339)
Q Consensus       126 i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  205 (339)
                      |..+.--  +...++.  .|+.+..|.................+..+.-.....++.  .|+.+..|.............
T Consensus        67 v~~v~~G--~~~~~al--~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~~--~dg~v~~~g~~~~~~~~~~~~  140 (273)
T d1jtdb_          67 VDAIAAG--NYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL--KDGKVIAWGDDSDGQTTVPAE  140 (273)
T ss_dssp             CCEEEEC--SSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEEE--ETTEEEEEECCTTSTTSCCGG
T ss_pred             ceEEecC--CCceeee--eeeeeeccCCCcceeeccccccccceeEEeeeccccccc--ccccceecccCCCCceeeecc
Confidence            5555542  3333333  489999998643221111111223344444433333322  488899987554332221111


Q ss_pred             CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307          206 NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV  285 (339)
Q Consensus       206 ~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~  285 (339)
                         ....+..++-    +.+......++. ++.|......+. .........|..|+.....  .++. . ||.|+-|=.
T Consensus       141 ---~~~~v~~~~~----~~~~~~~~~~g~-~~~~G~~~~g~~-~~~~~~~~~v~~Is~G~~h--~~~l-~-dG~v~~WG~  207 (273)
T d1jtdb_         141 ---AQSGVTALDG----GVYTALAVKNGG-VIAWGDNYFGQT-TVPAEAQSGVDDVAGGIFH--SLAL-K-DGKVIAWGD  207 (273)
T ss_dssp             ---GGSSEEEEEE----CSSEEEEEETTE-EEEEECCTTSTT-SCCGGGSSSEEEEEECSSE--EEEE-E-TTEEEEEEC
T ss_pred             ---CCceEEEEec----cceeeeeecccc-eeEeecccCCcc-cccccccCCccceecccee--eEEE-e-cCcEEEcCC
Confidence               1234444432    222233345676 888876543332 1122234567777765443  3332 3 799998855


Q ss_pred             cCC
Q 040307          286 VGP  288 (339)
Q Consensus       286 ~~~  288 (339)
                      ...
T Consensus       208 n~~  210 (273)
T d1jtdb_         208 NRY  210 (273)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=82.40  E-value=10  Score=30.06  Aligned_cols=148  Identities=10%  Similarity=-0.053  Sum_probs=82.0

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-------ccCCceeEEEecC--CcEEEEEeCC----CcEE
Q 040307          124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-------AHDREVYDISWGG--FNVFASVSGD----CSVR  190 (339)
Q Consensus       124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~--~~~l~~~~~d----~~i~  190 (339)
                      ..|.+|+++|.+.+.+.+++..|-|..-+ ..++.-..+.       .....+.+|+++|  .+.+..+..+    ....
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCcc
Confidence            78999999998889998888877664332 3344333221       1233578888883  4555554422    1234


Q ss_pred             EEECCCC-cceeeEEeCC------CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe------cCCCC
Q 040307          191 VFDLRDK-ERSTIIYENP------VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS------KHEGS  257 (339)
Q Consensus       191 i~d~~~~-~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~------~~~~~  257 (339)
                      +|-...+ +.-..+....      ........+.++|.+...+.+++.++. |  |-....++.-..+.      .....
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~g-l--~~S~D~G~tW~~~~~~~~~~~~~~~  167 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG-I--WKSSDRAKTWTNVTSIPDAFTNGIG  167 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSC-E--EEESSTTSSCEECTTSSCCCCSSSC
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccc-e--eeecCCCceeeecccCcccccCCcc
Confidence            5544332 2211211110      011345678999988888888877766 4  33333233332221      12235


Q ss_pred             eeEEEeccCCCCeEEEEe
Q 040307          258 VNGISWAPLYGRRLCSVA  275 (339)
Q Consensus       258 v~~~~~~p~~~~~l~~~~  275 (339)
                      +..+.++|..+..|..+.
T Consensus       168 ~~~i~~~p~~~~~~y~~~  185 (427)
T d2ebsa1         168 YTSVIFDPERNGTIYASA  185 (427)
T ss_dssp             EEEEEECTTSTTCEEEEE
T ss_pred             ceEEEecccccceeeeee
Confidence            788999997655554433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.21  E-value=5.6  Score=33.32  Aligned_cols=57  Identities=11%  Similarity=-0.025  Sum_probs=41.1

Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII  203 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  203 (339)
                      |.+.-||+.+++.+...... .+...-... .+.++++++.|+.++.+|.++++.+=..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            46888999999988777533 222211223 5778888999999999999999965443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.61  E-value=2.1  Score=36.30  Aligned_cols=84  Identities=5%  Similarity=-0.138  Sum_probs=50.2

Q ss_pred             CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307          146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR  224 (339)
Q Consensus       146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  224 (339)
                      |.|.-||+.+++.+.... +..+...-..+ .+.+++.|+.||.++.+|.++++.+=............  +.|.-+..+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECCEE
Confidence            578888988888766553 22222222223 47788889999999999999998554433321111222  333333455


Q ss_pred             eEEEEeeC
Q 040307          225 FMATVGMD  232 (339)
Q Consensus       225 ~l~~~~~d  232 (339)
                      |+++...-
T Consensus       530 Yvav~~G~  537 (596)
T d1w6sa_         530 YVAIYYGV  537 (596)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            67655443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.32  E-value=12  Score=30.14  Aligned_cols=114  Identities=16%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe-----ecCCCCceEEEEcCCCCCCCCCeEE
Q 040307           18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI-----FDHPYTPTNIAFFPSEETLNPDIVA   92 (339)
Q Consensus        18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~~~~~~la   92 (339)
                      ....+|+|.|+   +++|++--    ..|.|++  ++..+........+.     ..-+.....|+|+|+-.. +..+.+
T Consensus        27 ~~P~~la~~pd---g~llVter----~~G~i~~--v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~-n~~iYv   96 (450)
T d1crua_          27 NKPHALLWGPD---NQIWLTER----ATGKILR--VNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN-NPYIYI   96 (450)
T ss_dssp             SSEEEEEECTT---SCEEEEET----TTCEEEE--ECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT-SCEEEE
T ss_pred             CCceEEEEeCC---CeEEEEEe----cCCEEEE--EECCCCcEeecccCCccccccCCCCceeeEEeCCCCcc-CCEEEE
Confidence            57789999999   98887764    3689988  444444333211110     122356788999996321 113444


Q ss_pred             EeC---------C-----cEEEEeecCCcce--e-EEEeecC-CCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307           93 TSG---------D-----SLRLWEIHDDRTE--L-KSLLNSN-KTSEFSSAITSFDWAGFDTRRVATCSV  144 (339)
Q Consensus        93 ~~~---------~-----~i~iw~~~~~~~~--~-~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~  144 (339)
                      +.+         .     .+..+..+.....  . ...+... ....  .....|.|.| ++.++++.+.
T Consensus        97 syt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~--H~gg~l~fgp-DG~LYvs~Gd  163 (450)
T d1crua_          97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVIGP-DQKIYYTIGD  163 (450)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEECT-TSCEEEEECC
T ss_pred             EEecCCCCCcccccccceEEEeeecccccccccceEEEeeccccccc--ccccceeEcC-CCCEEEEecC
Confidence            321         1     2444444443211  1 1111111 1111  3467899998 8887777664