Citrus Sinensis ID: 040342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEEEcHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEcHHHHHHHHcccccccEEccccccEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEc
Coil and Loop (DISEMBL)
MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKscdnkrnpircfheNELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCcletenpvlvfeyv
Flexible Loop (DISEMBL)
mssffrkikhlgkayketfmlrNGKVFLEKLIkscdnkrnpircfhenelkiatknydrqKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV
Low Complexity Region (SEG)
MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV
Disordered region (IsUnstruct)
****FRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY*
Disordered Region (DISOPRED)
MSSFFR*IKHL***********NGKVFL**********RN*IRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV
Disordered Region (DISEMBL)
MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV
Disordered Region (DISPRO)
MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q9S9M1	731	Wall-associated receptor	no	no	0.954	0.170	0.371	2e-16
Q9S9M5	730	Wall-associated receptor	no	no	0.954	0.171	0.351	4e-16
Q7X8C5	748	Wall-associated receptor	no	no	0.977	0.171	0.358	4e-16
Q9LMT9	764	Putative wall-associated	no	no	0.877	0.150	0.361	9e-16
Q9S9M2	761	Wall-associated receptor	no	no	0.854	0.147	0.370	3e-15
Q9S9M3	730	Wall-associated receptor	no	no	0.854	0.153	0.370	6e-15
Q8VYA3	769	Wall-associated receptor	no	no	0.977	0.166	0.335	6e-15
Q8GXQ3	642	Wall-associated receptor	no	no	0.854	0.174	0.379	9e-15
Q9C9L5	792	Wall-associated receptor	no	no	0.954	0.157	0.351	1e-14
Q9LN59	788	Putative wall-associated	no	no	0.854	0.142	0.362	2e-14

>sp|Q9S9M1|WAKLE_ARATH Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)

Query: 4   FFRKIKHLGKAYKETFMLRNGKVFL-EKLIKSCDNKRNPIRCFHENELKIATKNYDRQKV 62
           F +K + +  + K  F  RNG + L ++L  + D   +  R F   ELK AT N+  ++V
Sbjct: 380 FIKKRRRIISSRK--FFKRNGGLLLKQQLTTTNDGNVDMSRLFSSEELKKATDNFSVKRV 437

Query: 63  ITTGLGYELFKGFLHD---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCL 119
           +  G    ++KG + D     V   K V+ D   +F  N I+  SQ+NH+N+++LIGCCL
Sbjct: 438 LGKGSQGTVYKGMMVDGKIIAVKRSKVVDEDKLEKF-INEIILLSQINHRNIVKLIGCCL 496

Query: 120 ETENPVLVFEYV 131
           ETE P+LV+EY+
Sbjct: 497 ETEVPILVYEYI 508

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. May be involved in plant's response to pathogen infection.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9S9M5|WAKLA_ARATH Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 6/131 (4%)

Query: 4   FFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVI 63
             +K +++ ++ K  F  RNG + L++ + + D      + F   EL+ AT N+   +V+
Sbjct: 378 LIKKRRNINRSKK--FFKRNGGLLLKQQLTTKDGNVEMSKIFSSKELRKATDNFSIDRVL 435

Query: 64  TTGLGYELFKGFLHDYPVSIMK---FVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE 120
             G    ++KG L D  +  +K    V+ D   EF  N IV  SQ+NH+N+++L+GCCLE
Sbjct: 436 GQGGQGTVYKGMLVDGSIVAVKRSKVVDEDKMEEF-INEIVLLSQINHRNIVKLLGCCLE 494

Query: 121 TENPVLVFEYV 131
           TE P+LV+EY+
Sbjct: 495 TEVPILVYEYI 505

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 1   MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQ 60
           +  F +K + L +  K  F  RNG + L++ +   +      R F  +EL+ AT N+++ 
Sbjct: 362 LYKFVQKRRKLIRMRK--FFRRNGGMLLKQQLARKEGNVEMSRIFSSHELEKATDNFNKN 419

Query: 61  KVITTGLGYELFKGFLHD---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGC 117
           +V+  G    ++KG L D     V   K V+ D   EF  N +V  +Q+NH+N+++L+GC
Sbjct: 420 RVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEF-INEVVVLAQINHRNIVKLLGC 478

Query: 118 CLETENPVLVFEYV 131
           CLETE PVLV+E+V
Sbjct: 479 CLETEVPVLVYEFV 492

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMT9|WAKLL_ARATH Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)

Query: 16  KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGF 75
           K  F  RNG + L++ + +   +    + F   EL+ AT N++  +VI  G    ++KG 
Sbjct: 413 KRKFFKRNGGLLLQQQLNTTQGRVEKTKLFSSRELEKATDNFNDNRVIGQGGQGTVYKGM 472

Query: 76  LHD-YPVSIMK--FVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
           L D   V++ K   V+ D   EF  N ++  SQ+NH++V++L+GCCLETE P+LV+E++
Sbjct: 473 LVDGRSVAVKKSNVVDEDKLQEF-INEVIILSQINHRHVVKLLGCCLETEVPILVYEFI 530

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M2|WAKLD_ARATH Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 4/116 (3%)

Query: 19  FMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHD 78
           F  RNG + L++ +   +      + F  NEL+ AT N++  +V+  G    ++KG L D
Sbjct: 386 FFRRNGGMLLKQQLARKEGNVEMSKIFSSNELEKATDNFNTNRVLGQGGQGTVYKGMLVD 445

Query: 79  ---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
                V   K ++ D   EF  N +V  +Q+NH+N+++L+GCCLETE PVLV+E+V
Sbjct: 446 GRIVAVKRSKAMDEDKVEEF-INEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFV 500

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Plays a role in plant mineral nutrients response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M3|WAKLC_ARATH Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 19  FMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHD 78
           F  RNG + L++ + + D      + F   EL+ AT N+   +V+  G    ++K  L D
Sbjct: 390 FFKRNGGLLLKQQLTTKDGSVEMSKIFSSRELEKATDNFSIDRVLGQGGQGTVYKRMLVD 449

Query: 79  YPVSIMK---FVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
             +  +K    V+ D   EF  N IV  SQ+NH+N+++L+GCCLETE P+LV+EY+
Sbjct: 450 GSIVAVKRSKVVDEDKMEEF-INEIVLLSQINHRNIVKLLGCCLETEVPILVYEYI 504

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8VYA3|WAKLJ_ARATH Wall-associated receptor kinase-like 10 OS=Arabidopsis thaliana GN=WAKL10 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 1   MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQ 60
           +  F R+ + L +  K+ F  RNG + L++ + + +   +  R F+  EL+ AT+N+   
Sbjct: 379 LYKFIRRQRRLNQ--KKKFFKRNGGLLLQQQLTTTEGNVDSTRVFNSRELEKATENFSLT 436

Query: 61  KVITTGLGYELFKGFLHD---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGC 117
           +++  G    ++KG L D     V   K V+ D   EF  N +V  SQ+NH+N+++L+GC
Sbjct: 437 RILGEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEF-INEVVILSQINHRNIVKLLGC 495

Query: 118 CLETENPVLVFEYV 131
           CLET+ P+LV+E++
Sbjct: 496 CLETDVPILVYEFI 509

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8GXQ3|WAKLF_ARATH Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 4/116 (3%)

Query: 19  FMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHD 78
           F  RNG + L++ + + +   +  R F   ELK AT N+   +V+  G    ++KG L +
Sbjct: 394 FFKRNGGLLLKQQLITKNGNVDMSRIFSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAE 453

Query: 79  ---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
                V   K V      EF  N +V  SQ+NH+N+++L+GCCLETE PVLV+EY+
Sbjct: 454 GRIVAVKRSKVVGEGKMEEF-INEVVLLSQINHRNIVKLLGCCLETEVPVLVYEYI 508

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9C9L5|WAKLH_ARATH Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 4   FFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVI 63
           F +K + L +  K+ F  RNG + L++ + S          F   EL+ AT+N+   +++
Sbjct: 396 FIKKQRKLNQ--KKKFFKRNGGLLLQQQLISTVGMVEKTIVFSSRELEKATENFSSNRIL 453

Query: 64  TTGLGYELFKGFLHD---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE 120
             G    ++KG L D     V   K V+ D   EF  N +V  SQ+NH+N+++L+GCCLE
Sbjct: 454 GQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEF-INEVVILSQINHRNIVKLLGCCLE 512

Query: 121 TENPVLVFEYV 131
           T+ PVLV+E++
Sbjct: 513 TKVPVLVYEFI 523

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LN59|WAKLK_ARATH Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)

Query: 19  FMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHD 78
           F  RNG + L++ + +        R F   EL+ AT N+   +++  G    ++KG L D
Sbjct: 413 FFKRNGGLLLQQQLNTNKGNVEKTRIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVD 472

Query: 79  ---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
                V   K V+ D   EF  N +V  SQ+NH++V++L+GCCLETE P LV+E++
Sbjct: 473 GRTVAVKKSKVVDEDKLEEF-INEVVILSQINHRHVVKLLGCCLETEVPTLVYEFI 527

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
224123144	344	predicted protein [Populus trichocarpa]	0.908	0.345	0.541	1e-29
255582635	331	receptor protein kinase, putative [Ricin	0.908	0.359	0.5	8e-28
255542658	356	serine-threonine protein kinase, plant-t	0.877	0.323	0.474	2e-22
255542676	247	serine-threonine protein kinase, plant-t	0.877	0.465	0.448	1e-20
255542662	330	serine-threonine protein kinase, plant-t	0.854	0.339	0.460	2e-19
296081092	1111	unnamed protein product [Vitis vinifera]	0.954	0.112	0.421	1e-18
359493231	497	PREDICTED: inactive serine/threonine-pro	0.877	0.231	0.440	3e-18
297817106	334	hypothetical protein ARALYDRAFT_486225 [	0.847	0.332	0.398	3e-17
255542656	331	serine-threonine protein kinase, plant-t	0.908	0.359	0.388	3e-17
18410796	334	putative protein kinase [Arabidopsis tha	0.885	0.347	0.389	1e-16

>gi|224123144|ref|XP_002319005.1| predicted protein [Populus trichocarpa] gi|222857381|gb|EEE94928.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 13  KAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELF 72
           K  KET  ++NG   LEKL+  CD K N IR F   ELK AT NYD QK++T   GY+L+
Sbjct: 12  KVNKETAFIKNGSKLLEKLVDICDGKCNSIRSFSATELKKATNNYDPQKILTGDSGYKLY 71

Query: 73  KGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV 131
           KGFL   PVS+ KF + D   E+CFN+IV+AS+M+ HK+ ++L+GCCLE   P+LVFEYV
Sbjct: 72  KGFLQGRPVSVKKFKDDDEQYEYCFNDIVYASKMSVHKSFMKLLGCCLEARIPILVFEYV 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582635|ref|XP_002532098.1| receptor protein kinase, putative [Ricinus communis] gi|223528232|gb|EEF30288.1| receptor protein kinase, putative [Ricinus communis]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 13  KAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELF 72
           KA  E   L NG++ LEKLI SCD + NPIR F  +EL  AT +YD +K+IT   GY+L+
Sbjct: 5   KAESERISLMNGRMLLEKLIASCDGRCNPIRIFSADELSRATDDYDPRKIITQDSGYKLY 64

Query: 73  KGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV 131
            G LH+  +S+ KF +     ++C+N+I+FA+QM+ HKN ++L+GCCLET+ PVLVFE +
Sbjct: 65  NGLLHERTISVKKFKDKSEQYKYCYNDIMFATQMSKHKNFLKLLGCCLETQIPVLVFEPI 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542658|ref|XP_002512392.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548353|gb|EEF49844.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 1/116 (0%)

Query: 17  ETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFL 76
           ET ++RNG + LEK I   + + NPIR F  +EL+ AT +Y +  VI  G  + L+KGFL
Sbjct: 13  ETALMRNGGILLEKSIAFNNGRGNPIRWFSVDELQTATNSYSQNNVIYEGGWHTLYKGFL 72

Query: 77  HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV 131
            D PV + ++ N+ +      N+IVFAS+M+ HKNV++L+GCCLE+E P+LVFEY 
Sbjct: 73  RDRPVIVKRYRNNIHERVCPINDIVFASEMSRHKNVLKLLGCCLESEIPILVFEYA 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542676|ref|XP_002512401.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548362|gb|EEF49853.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 1/116 (0%)

Query: 17  ETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFL 76
           E  ++RNG + LEK I   + + NPIRCF   EL+ AT +Y +  VI  G  +  +KGFL
Sbjct: 5   EKALMRNGGILLEKSIAFNNGRGNPIRCFSVEELQTATNSYSQNNVIYEGGWHTHYKGFL 64

Query: 77  HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV 131
            + PV + ++  + +      N+IVFAS+M+ HKNV++L+GCCLE+E P+LVFEY 
Sbjct: 65  RERPVIVKRYRTNIHERVCPINDIVFASEMSRHKNVLKLLGCCLESEIPILVFEYA 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542662|ref|XP_002512394.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548355|gb|EEF49846.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 3/115 (2%)

Query: 16  KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGF 75
           KE F++ NG   LEK +  C+ + NPIR F   EL+ AT+NY+ ++V+     +EL+KGF
Sbjct: 4   KEAFLI-NGSKLLEKSVAFCNGRCNPIRNFSSEELEKATRNYNEKQVLKLDGYFELYKGF 62

Query: 76  LHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFE 129
           L D PV + KF+      +   N IV+AS M+ H N I+L+GCCLET +P+LVFE
Sbjct: 63  LQDRPVIVKKFLEVG-VEQLAINEIVYASAMSVHINSIKLLGCCLETPSPILVFE 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081092|emb|CBI18286.3| unnamed protein product [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 3/128 (2%)

Query: 6   RKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITT 65
           ++ K L    +E F L+NG + LEKL+ S + + NPIR F   EL+ AT  Y+   +   
Sbjct: 609 QQTKKLMAKKREEFFLKNGSLLLEKLVSSLNGRSNPIRNFSIKELEQATNKYNSSLIFDR 668

Query: 66  GLGYELFKGFLHDYPVSIMKF--VNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETE 122
               E +KG L    VS+ KF  V  D   E     I FA+Q++ HKNV++L GCCLET+
Sbjct: 669 WTYSEWYKGSLEGRFVSVRKFHPVIDDAFLERVIKEITFATQLSAHKNVLKLFGCCLETQ 728

Query: 123 NPVLVFEY 130
            PVLV+EY
Sbjct: 729 TPVLVYEY 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493231|ref|XP_002265528.2| PREDICTED: inactive serine/threonine-protein kinase At1g67470-like [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 3/118 (2%)

Query: 16  KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGF 75
           +E F L+NG + LEKL+ S + + NPIR F   EL+ AT  Y+   +       E +KG 
Sbjct: 5   REEFFLKNGSLLLEKLVSSLNGRSNPIRNFSIKELEQATNKYNSSLIFDRWTYSEWYKGS 64

Query: 76  LHDYPVSIMKF--VNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEY 130
           L    VS+ KF  V  D   E     I FA+Q++ HKNV++L GCCLET+ PVLV+EY
Sbjct: 65  LEGRFVSVRKFHPVIDDAFLERVIKEITFATQLSAHKNVLKLFGCCLETQTPVLVYEY 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817106|ref|XP_002876436.1| hypothetical protein ARALYDRAFT_486225 [Arabidopsis lyrata subsp. lyrata] gi|297322274|gb|EFH52695.1| hypothetical protein ARALYDRAFT_486225 [Arabidopsis lyrata subsp. lyrata]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 21  LRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYP 80
           L+NG + LE+LI S D K NPIRCF  +++  AT N+   ++I++   +  +KG + + P
Sbjct: 13  LKNGGILLEELIASFDGKTNPIRCFSSDQILKATDNFSESRIISSWGYFIWYKGVIEEIP 72

Query: 81  VSIMKFVNSDYAA-EFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV 131
           VSI K+ + + ++    + +I  +SQM+ HKN ++LIGCCLE + P L+ EY 
Sbjct: 73  VSIKKWSSQNLSSFTEAYRDISVSSQMSGHKNALKLIGCCLEFDLPALICEYT 125

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542656|ref|XP_002512391.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548352|gb|EEF49843.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 12  GKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYEL 71
           G +  E  ++RNG+  LEK +   + + NP+RCF   EL+ AT +Y +  V        L
Sbjct: 6   GDSKYEKALMRNGRSLLEKSVALNNGRGNPVRCFSVKELQNATNSYSQHNVFYIDGTCRL 65

Query: 72  FKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEY 130
           +KG + D PV + K+ +  + +E   ++IV AS+M+ H+NV++L+GCCLE+E P+ VFEY
Sbjct: 66  YKGLIRDRPVIVKKY-DYKHPSEDPVSDIVIASEMSVHRNVLKLLGCCLESEIPIPVFEY 124

Query: 131 V 131
            
Sbjct: 125 A 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410796|ref|NP_567053.1| putative protein kinase [Arabidopsis thaliana] gi|79315431|ref|NP_001030878.1| putative protein kinase [Arabidopsis thaliana] gi|21536609|gb|AAM60941.1| protein kinase-like protein [Arabidopsis thaliana] gi|51968380|dbj|BAD42882.1| protein kinase - like protein [Arabidopsis thaliana] gi|332646172|gb|AEE79693.1| putative protein kinase [Arabidopsis thaliana] gi|332646173|gb|AEE79694.1| putative protein kinase [Arabidopsis thaliana]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 74/118 (62%), Gaps = 2/118 (1%)

Query: 16  KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGF 75
           K  + L+NG + LE+LI S D K NPIRCF  +++  AT N+   ++I++   +  +KG 
Sbjct: 8   KRRWDLKNGGILLEELIASFDGKTNPIRCFSSDQILKATDNFSESRIISSWGYFIWYKGV 67

Query: 76  LHDYPVSIMKFVNSDYAA-EFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV 131
           + +  VSI K+ + + ++    + +I  +SQM+ HKN ++LIGCCLE + P LV EY 
Sbjct: 68  IEERQVSIKKWSSQNLSSFTEAYRDISVSSQMSGHKNALKLIGCCLEFDLPALVCEYT 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2076646	334	AT3G57750 [Arabidopsis thalian	0.862	0.338	0.420	1.4e-18
TAIR|locus:2076671	355	AT3G57730 [Arabidopsis thalian	0.877	0.323	0.386	6e-18
TAIR|locus:2019843	769	WAKL10 "WALL ASSOCIATED KINASE	0.954	0.162	0.343	1.4e-16
TAIR|locus:2076596	340	AT3G57700 [Arabidopsis thalian	0.977	0.376	0.386	3.4e-16
TAIR|locus:2200552	730	WAKL1 "wall associated kinase-	0.938	0.168	0.364	5.5e-16
TAIR|locus:2076681	359	AT3G57720 [Arabidopsis thalian	0.877	0.320	0.378	9.5e-16
TAIR|locus:2076656	357	AT3G57740 [Arabidopsis thalian	0.862	0.316	0.361	1.2e-15
TAIR|locus:2076586	351	AT3G57710 [Arabidopsis thalian	0.916	0.341	0.351	1.9e-15
TAIR|locus:2200562	748	WAKL2 "wall associated kinase-	0.954	0.167	0.366	2.5e-15
TAIR|locus:2076631	378	AT3G57760 [Arabidopsis thalian	0.816	0.283	0.409	2.5e-15

TAIR|locus:2076646 AT3G57750 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 50/119 (42%), Positives = 76/119 (63%)

Query:    16 KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYEL-FKG 74
             K  + L+NG + LE+LI S D K NPIRCF  +++  AT N+   ++I++  GY + +KG
Sbjct:     8 KRRWDLKNGGILLEELIASFDGKTNPIRCFSSDQILKATDNFSESRIISSW-GYFIWYKG 66

Query:    75 FLHDYPVSIMKFVNSDYAAEF--CFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEY 130
              + +  VSI K+ +S   + F   + +I  +SQM+ HKN ++LIGCCLE + P LV EY
Sbjct:    67 VIEERQVSIKKW-SSQNLSSFTEAYRDISVSSQMSGHKNALKLIGCCLEFDLPALVCEY 124

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2076671 AT3G57730 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.0e-18, P = 6.0e-18
 Identities = 46/119 (38%), Positives = 70/119 (58%)

Query:    16 KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGF 75
             KE + L NG +FL++LI  C+ K  PIR F  ++++ ATKN+D    +     Y  +KG 
Sbjct:    26 KERWFLENGSIFLKELIVDCNGKSIPIRSFTSSQIRKATKNFDLSCFVAEEGFYIWYKGV 85

Query:    76 LHDYPVSIMKFVN---SDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEY 130
             + D    I +F     +DY     + +IV +++M NH N ++L+GCCLE   PVLVFE+
Sbjct:    86 IEDRSYMIKRFSEYKVTDYRVSEVYKDIVLSARMSNHNNFLKLLGCCLEFPFPVLVFEF 144

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019843 WAKL10 "WALL ASSOCIATED KINASE (WAK)-LIKE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 45/131 (34%), Positives = 78/131 (59%)

Query:     4 FFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVI 63
             F R+ + L +  K+ F  RNG + L++ + + +   +  R F+  EL+ AT+N+   +++
Sbjct:   382 FIRRQRRLNQ--KKKFFKRNGGLLLQQQLTTTEGNVDSTRVFNSRELEKATENFSLTRIL 439

Query:    64 TTGLGYELFKGFLHD---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE 120
               G    ++KG L D     V   K V+ D   EF  N +V  SQ+NH+N+++L+GCCLE
Sbjct:   440 GEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEF-INEVVILSQINHRNIVKLLGCCLE 498

Query:   121 TENPVLVFEYV 131
             T+ P+LV+E++
Sbjct:   499 TDVPILVYEFI 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=IDA

GO:0006952 "defense response" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0009620 "response to fungus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2076596 AT3G57700 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 51/132 (38%), Positives = 77/132 (58%)

Query:     1 MSSFFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQ 60
             M   FRK K   K  +E  + +NG + LE+LI +     NPIR F  +++  AT ++D  
Sbjct:     1 MLRLFRK-KKKQKKEEEINLQKNGSLLLEELIATSGGIYNPIRTFSSDQILQATNHFDWN 59

Query:    61 KVITTGLGYELFKGFLHDYPVSIMKFVN-SDYAAEFCFNNIVFASQMN-HKNVIRLIGCC 118
              VI+    +  +KG + + PV I KF + S + A+  + +I  +S M+ HKNV++L+GCC
Sbjct:    60 YVISEDR-FVWYKGMIENRPVLIKKFQDCSVFDADNFYRDIAVSSLMSSHKNVLKLLGCC 118

Query:   119 LETENPVLVFEY 130
             LE   PVLV EY
Sbjct:   119 LEFPRPVLVCEY 130

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2200552 WAKL1 "wall associated kinase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.5e-16, P = 5.5e-16
 Identities = 47/129 (36%), Positives = 75/129 (58%)

Query:     6 RKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITT 65
             +K +++ ++ K  F  RNG + L++ + + D      + F   EL+ AT N+   +V+  
Sbjct:   380 KKRRNINRSKK--FFKRNGGLLLKQQLTTKDGNVEMSKIFSSKELRKATDNFSIDRVLGQ 437

Query:    66 GLGYELFKGFLHD---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE 122
             G    ++KG L D     V   K V+ D   EF  N IV  SQ+NH+N+++L+GCCLETE
Sbjct:   438 GGQGTVYKGMLVDGSIVAVKRSKVVDEDKMEEF-INEIVLLSQINHRNIVKLLGCCLETE 496

Query:   123 NPVLVFEYV 131
              P+LV+EY+
Sbjct:   497 VPILVYEYI 505

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076681 AT3G57720 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 9.5e-16, P = 9.5e-16
 Identities = 45/119 (37%), Positives = 66/119 (55%)

Query:    16 KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGF 75
             +E + L NG +FL++LI  C+ K  PIR F  +++  AT N+     +T    Y  +KG 
Sbjct:    29 EEKWFLDNGSIFLKELIADCNGKSIPIRNFSSDQILKATSNFGSSCFVTAEGFYVWYKGI 88

Query:    76 LHDYPVSIMKFVN---SDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEY 130
             + D    I +F     + Y     +N IV +++M NH N ++LIG CLE   PVLVFEY
Sbjct:    89 IEDRSYMIKRFSEYKVTQYRVAEVYNEIVLSARMSNHNNFLKLIGFCLEFSLPVLVFEY 147

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076656 AT3G57740 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 43/119 (36%), Positives = 67/119 (56%)

Query:    16 KETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGF 75
             ++ +   NGKV LE LI+ C+ K NPI+ F   E+  AT N+    ++     + +++G 
Sbjct:    18 RQRWFQENGKVLLEDLIELCNGKSNPIKTFSAEEILQATDNFSESNLVIR-FNF-MYRGI 75

Query:    76 LHDYPVSIMK----FVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY 130
             L + PV I +    +  SD   + C +  V +    HKN ++L+GCCLE E+PVLV EY
Sbjct:    76 LQNRPVLIKRATWNYYKSDTLEKICRDIAVSSMVSGHKNFLKLLGCCLEFEHPVLVCEY 134

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076586 AT3G57710 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 45/128 (35%), Positives = 72/128 (56%)

Query:     9 KHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVITTGLG 68
             K   KA K  F L NG +FL +L+  C+ K  PIR F   ++  AT N+D    ++  + 
Sbjct:    14 KEKDKA-KRWF-LDNGSIFLRELVADCNGKSIPIRSFSPEQILKATNNFDSSCFVSQDVY 71

Query:    69 YELFKGFLHDYPVSIMKFVNSD-----YAAEFCFNNIVFASQM-NHKNVIRLIGCCLETE 122
             Y+ ++G + D    I +F   +     +  +  +N+IV +++M NH N ++L+GCCLE  
Sbjct:    72 YKWYRGEIEDRSYMIKRFSEDEITGKRHRVKEVYNDIVLSARMSNHSNFLQLLGCCLEFP 131

Query:   123 NPVLVFEY 130
              PVLVFE+
Sbjct:   132 FPVLVFEF 139

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2200562 WAKL2 "wall associated kinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 48/131 (36%), Positives = 76/131 (58%)

Query:     4 FFRKIKHLGKAYKETFMLRNGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNYDRQKVI 63
             F +K + L +  K  F  RNG + L++ +   +      R F  +EL+ AT N+++ +V+
Sbjct:   365 FVQKRRKLIRMRK--FFRRNGGMLLKQQLARKEGNVEMSRIFSSHELEKATDNFNKNRVL 422

Query:    64 TTGLGYELFKGFLHD---YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE 120
               G    ++KG L D     V   K V+ D   EF  N +V  +Q+NH+N+++L+GCCLE
Sbjct:   423 GQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEF-INEVVVLAQINHRNIVKLLGCCLE 481

Query:   121 TENPVLVFEYV 131
             TE PVLV+E+V
Sbjct:   482 TEVPVLVYEFV 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2076631 AT3G57760 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 45/110 (40%), Positives = 65/110 (59%)

Query:    23 NGKVFLEKLIKSCDNKRNPIRCFHENELKIATKNY-DRQKVITTGLGYELFKGFLHDYPV 81
             NG+V L++LI+ CD K NPI+ F  +++  AT N+    +     + Y  +KG L D PV
Sbjct:    21 NGEVVLKELIECCDGKCNPIKNFSYDQIIKATNNFCQSNRASRIDVYYRCYKGMLDDRPV 80

Query:    82 SIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEY 130
              I K   +    E C  +I  +S ++ HKN ++L+GCCLE   PVLVFEY
Sbjct:    81 LIKKGKYTLDMKEIC-RDIAISSMVSGHKNFLKLLGCCLEFTPPVLVFEY 129

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-06
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-06
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-05
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	8e-05
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	0.004

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
            +++H NV++L+G C E E   +V EY+
Sbjct: 56  RKLDHPNVVKLLGVCTEEEPLYIVMEYM 83

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 10/28 (35%), Positives = 20/28 (71%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
            +++H N+++L+G C E E  ++V EY+
Sbjct: 56  RKLDHPNIVKLLGVCTEEEPLMIVMEYM 83

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
            ++ H NV+RL+G C E E   LV EY+
Sbjct: 51  KKLGHPNVVRLLGVCTEEEPLYLVLEYM 78

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
            +++H N++RL+G C + E   +V EY+
Sbjct: 56  KKLSHPNIVRLLGVCTQGEPLYIVTEYM 83

Length = 258

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 83  IMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY 130
           I+K  +S    E     I    ++NH N+++L G   +  +  LV EY
Sbjct: 25  IIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEY 72

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 100 IVFASQMNHKNVIRLIGCCLETENPVLVFEY 130
           +   S+++  N+ RL+G C       ++ EY
Sbjct: 70  VKILSRLSDPNIARLLGVCTVDPPLCMIMEY 100

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.82
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.65
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.6
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.57
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.53
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.52
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.51
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.51
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.49
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.47
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.44
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.44
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.37
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.35
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.35
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.28
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.28
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.28
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.27
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.27
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.26
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.26
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.26
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.26
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.25
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.25
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.25
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.24
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.24
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.24
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.24
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.24
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.24
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.24
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.24
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.23
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.23
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.23
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.22
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.22
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.22
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.21
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.21
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.21
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.21
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.2
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.2
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.2
KOG0605	550	consensus NDR and related serine/threonine kinases	99.2
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.19
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.19
KOG0586	596	consensus Serine/threonine protein kinase [General	99.19
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.19
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.19
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.19
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.19
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.18
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.18
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.18
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.17
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.17
PHA02988	283	hypothetical protein; Provisional	99.17
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.17
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.16
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.16
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.16
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.16
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.16
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.15
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.15
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.15
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.15
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.15
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.15
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.14
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.14
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.14
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.14
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.14
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.14
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.14
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.13
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.13
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.13
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.13
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.12
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.12
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.12
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.12
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.11
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.11
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.11
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.11
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.11
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.11
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.11
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.11
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.11
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.1
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.1
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.1
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.1
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.1
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.09
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.09
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.09
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.09
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.09
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.09
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.09
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.09
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.09
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.09
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.08
PLN00009	294	cyclin-dependent kinase A; Provisional	99.08
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.08
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.08
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.08
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.08
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.07
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.07
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.07
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.07
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.07
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.07
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.07
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.07
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.06
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.06
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.06
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.06
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.06
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.06
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.06
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.06
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.06
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.06
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.06
PHA03212	391	serine/threonine kinase US3; Provisional	99.06
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.05
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.05
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.05
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.05
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.05
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.05
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.05
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.05
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.05
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.05
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.05
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.05
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.05
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.05
PTZ00267	478	NIMA-related protein kinase; Provisional	99.05
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.05
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.04
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.04
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.04
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.04
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.04
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.04
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.04
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.03
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.03
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.03
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.03
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.03
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.03
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.03
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.03
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.03
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.02
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.02
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.02
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.02
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.02
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.02
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.02
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.02
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.02
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.02
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.01
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.01
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.01
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.01
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.01
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.01
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.01
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.0
KOG0198	313	consensus MEKK and related serine/threonine protei	99.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.99
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.99
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.99
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	98.99
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.99
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.99
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.99
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	98.98
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.98
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	98.98
PTZ00036	440	glycogen synthase kinase; Provisional	98.98
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.98
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.98
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.98
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.98
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	98.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.97
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	98.97
KOG0578	550	consensus p21-activated serine/threonine protein k	98.97
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	98.97
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.96
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	98.96
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.96
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	98.96
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	98.95
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.95
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.95
PHA03209	357	serine/threonine kinase US3; Provisional	98.95
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.95
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.95
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.95
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	98.95
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.95
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	98.95
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.94
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.94
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	98.94
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	98.94
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.94
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.94
PHA03211	461	serine/threonine kinase US3; Provisional	98.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.94
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	98.94
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.94
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.93
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.93
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.93
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	98.93
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.93
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.93
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.93
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.93
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.93
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.92
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.92
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	98.92
PRK09188	365	serine/threonine protein kinase; Provisional	98.92
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.92
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.92
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.91
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	98.91
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.91
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.91
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.91
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.91
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.91
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.91
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.91
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	98.9
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.9
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.9
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.9
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.9
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.9
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.89
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.89
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.89
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.89
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.89
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.89
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.88
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.88
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	98.88
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.88
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.87
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.87
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.87
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.87
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.87
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.86
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.86
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.86
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.86
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.86
KOG4717	864	consensus Serine/threonine protein kinase [Signal	98.86
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.86
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.86
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.86
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.86
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.85
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.85
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.85
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.85
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.85
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.84
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.84
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.84
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.84
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.84
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.83
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.83
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.83
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.83
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.83
KOG0589	426	consensus Serine/threonine protein kinase [General	98.82
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.82
PHA03207	392	serine/threonine kinase US3; Provisional	98.82
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.81
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.81
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.81
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.81
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.81
PTZ00283	496	serine/threonine protein kinase; Provisional	98.8
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.8
KOG0694	694	consensus Serine/threonine protein kinase [Signal	98.8
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.8
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.8
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.8
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.8
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.79
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.79
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.78
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.77
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.77
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.76
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.75
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.75
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.75
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.75
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	98.75
KOG1989	738	consensus ARK protein kinase family [Signal transd	98.74
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.73
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.73
PTZ00284	467	protein kinase; Provisional	98.73
PHA03210	501	serine/threonine kinase US3; Provisional	98.72
KOG0610	459	consensus Putative serine/threonine protein kinase	98.72
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	98.72
KOG1152	772	consensus Signal transduction serine/threonine kin	98.72
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.72
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.71
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.71
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.71
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.7
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.7
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.69
KOG3653	534	consensus Transforming growth factor beta/activin	98.66
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.64
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.63
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	98.57
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.56
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.55
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.53
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.51
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.5
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.49
PRK10345	210	hypothetical protein; Provisional	98.47
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.46
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.46
KOG1290	590	consensus Serine/threonine protein kinase [Signal	98.45
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.44
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.42
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.42
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.41
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.41
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.39
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.38
KOG0584	632	consensus Serine/threonine protein kinase [General	98.37
PRK14879	211	serine/threonine protein kinase; Provisional	98.34
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.27
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.26
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.26
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.26
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	98.23
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.18
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.15
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.14
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.1
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.08
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.08
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.01
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	97.97
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	97.97
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	97.96
PHA02882	294	putative serine/threonine kinase; Provisional	97.86
smart00090	237	RIO RIO-like kinase.	97.82
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	97.8
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	97.79
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	97.71
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.65
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.55
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	97.52
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	97.5
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	97.48
PRK12274	218	serine/threonine protein kinase; Provisional	97.47
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	97.45
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	97.42
KOG0696	683	consensus Serine/threonine protein kinase [Signal	97.34
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.33
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.32
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.31
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	97.25
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	97.22
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	97.21
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	97.17
KOG0695	593	consensus Serine/threonine protein kinase [Signal	97.15
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	97.04
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	96.83
COG0515	384	SPS1 Serine/threonine protein kinase [General func	96.77
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.57
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	95.9
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.62
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	95.61
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	95.33
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	95.16
KOG1243	690	consensus Protein kinase [General function predict	95.1
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	94.51
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	93.92
PRK10593	297	hypothetical protein; Provisional	93.5
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	92.08
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	91.39
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	89.71
PLN02876	822	acyl-CoA dehydrogenase	89.62
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	89.59
PF01636	239	APH: Phosphotransferase enzyme family This family	87.85
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	86.65
COG0661	517	AarF Predicted unusual protein kinase [General fun	86.57
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	85.33
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	84.07
COG0478	304	RIO-like serine/threonine protein kinase fused to	82.08
KOG1235	538	consensus Predicted unusual protein kinase [Genera	81.06

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=1.7e-19  Score=123.80  Aligned_cols=91  Identities=30%  Similarity=0.565  Sum_probs=83.5

Q ss_pred             CcceecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEE
Q 040342           41 PIRCFHENELKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCC  118 (131)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~  118 (131)
                      ....|++.++..+|++|+..+.||+|+||.||+|.. ++..||||.+...... ..+|..|+.++.+++|+|+|+|+|+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            567799999999999999999999999999999999 7788999988876654 56799999999999999999999999


Q ss_pred             EeCC-eeEEEEeeC
Q 040342          119 LETE-NPVLVFEYV  131 (131)
Q Consensus       119 ~~~~-~~~lv~E~~  131 (131)
                      .+.+ ..+||||||
T Consensus       141 ~e~~~~~~LVYEym  154 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYM  154 (361)
T ss_pred             ecCCceEEEEEEcc
Confidence            9888 599999997

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.65  E-value=8.1e-17  Score=111.75  Aligned_cols=82  Identities=17%  Similarity=0.314  Sum_probs=71.0

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++.....+.....||+|.||.||.|.+ ....||+|.+.........|.+|+.+|.+|+|+|||+++|+|..+++++||+
T Consensus       201 wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVt  280 (468)
T KOG0197|consen  201 WEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVT  280 (468)
T ss_pred             eeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEE
Confidence            333344445567899999999999999 4458999999988777788999999999999999999999999988999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      |||
T Consensus       281 E~m  283 (468)
T KOG0197|consen  281 EYM  283 (468)
T ss_pred             Eec
Confidence            997

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.60  E-value=6.9e-15  Score=99.90  Aligned_cols=78  Identities=23%  Similarity=0.396  Sum_probs=67.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc--hh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD--YA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~--~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ..+|.....||.|+|+.||+|..  .+..||||++....  .. ...+..|+.+|+.++|+|||.+++++..++.++|||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            34566677799999999999999  77899999997653  22 355789999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        89 EyC   91 (429)
T KOG0595|consen   89 EYC   91 (429)
T ss_pred             EeC
Confidence            996

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=6.3e-16  Score=112.37  Aligned_cols=81  Identities=19%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeC
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET  121 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~  121 (131)
                      +..+++......||+|+||.||+|..       ....||||.++.....  .++|.+|+.++..++|+|||+++|+|..+
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~  561 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREG  561 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccC
Confidence            34556666678899999999999987       1246999999876544  47899999999999999999999999999


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ++.+||+|||
T Consensus       562 ~P~~MvFEYm  571 (774)
T KOG1026|consen  562 DPLCMVFEYM  571 (774)
T ss_pred             CeeEEEEEec
Confidence            9999999998

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.53  E-value=3.5e-14  Score=99.63  Aligned_cols=88  Identities=23%  Similarity=0.284  Sum_probs=71.9

Q ss_pred             eecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE---CC--ee-EEEEEEecCc----hhHHHHHHHHHHHhccCCccccc
Q 040342           44 CFHENELKIATKNYDRQKVITTGLGYELFKGFL---HD--YP-VSIMKFVNSD----YAAEFCFNNIVFASQMNHKNVIR  113 (131)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~---~~--~~-vavk~~~~~~----~~~~~~~~e~~~l~~l~h~niv~  113 (131)
                      ++....++..-++....+.||+|+||.||+|.+   ++  .. ||+|......    ....++.+|+++|++++|+|||+
T Consensus       146 PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr  225 (474)
T KOG0194|consen  146 PIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVR  225 (474)
T ss_pred             cccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEE
Confidence            344455666667777789999999999999998   22  23 8999888522    22478999999999999999999


Q ss_pred             eeeEEEeCCeeEEEEeeC
Q 040342          114 LIGCCLETENPVLVFEYV  131 (131)
Q Consensus       114 l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|++...++++||+|++
T Consensus       226 ~yGVa~~~~Pl~ivmEl~  243 (474)
T KOG0194|consen  226 FYGVAVLEEPLMLVMELC  243 (474)
T ss_pred             EEEEEcCCCccEEEEEec
Confidence            999999999999999985

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.52  E-value=5.4e-14  Score=96.61  Aligned_cols=74  Identities=19%  Similarity=0.365  Sum_probs=63.9

Q ss_pred             CcCCeeeeCCCeEEEEEEECCee-EEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC-eeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFLHDYP-VSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE-NPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~~~~~-vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-~~~lv~E~~  131 (131)
                      .....+|.|+||.||++.|.|.. ||+|.+......   ...|.+|+.+|.+++|||||+++|+|..+. ..+||+|||
T Consensus        44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~  122 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYM  122 (362)
T ss_pred             hhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeC
Confidence            33456999999999999997776 999999865433   357999999999999999999999998876 689999997

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.51  E-value=8.7e-15  Score=104.78  Aligned_cols=85  Identities=13%  Similarity=0.322  Sum_probs=77.5

Q ss_pred             HHHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           47 ENELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        47 ~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      +++++....++.....||-|.||.||.|.|  ....||||.++.......+|+.|+.+|..+.|+|+|+|+|+|....+.
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPF  338 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPF  338 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCe
Confidence            466776677778889999999999999999  678999999998887788999999999999999999999999988899


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      |||+|||
T Consensus       339 YIiTEfM  345 (1157)
T KOG4278|consen  339 YIITEFM  345 (1157)
T ss_pred             EEEEecc
Confidence            9999998

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.7e-14  Score=99.35  Aligned_cols=78  Identities=19%  Similarity=0.266  Sum_probs=66.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC--CeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~l  126 (131)
                      .+.|...+.||+|.||.||++..  +|..||+|.+......   .....+||.||+++.|+||++|.+...+.  ..+||
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            45566678899999999999998  8889999998754422   35568999999999999999999998765  68999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |||||
T Consensus       196 VFeYM  200 (560)
T KOG0600|consen  196 VFEYM  200 (560)
T ss_pred             EEecc
Confidence            99998

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.49  E-value=2.8e-14  Score=101.12  Aligned_cols=79  Identities=16%  Similarity=0.266  Sum_probs=69.8

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +.+.+...+.||+|.||.|..+.. .+..||+|.++.....  ..+|.+|+++|.+++||||+.++|+|..+++++||+|
T Consensus       536 PRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~E  615 (807)
T KOG1094|consen  536 PRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITE  615 (807)
T ss_pred             chhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHH
Confidence            444556678899999999999999 5589999999976544  3789999999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      ||
T Consensus       616 Ym  617 (807)
T KOG1094|consen  616 YM  617 (807)
T ss_pred             HH
Confidence            97

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.47  E-value=1.1e-13  Score=89.90  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=66.9

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.+|+|.||.||+|..  +|..||+|.+......   .....+|+..|+.++|+||+.+++++...+.+.||+|||
T Consensus         4 Y~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm   83 (318)
T KOG0659|consen    4 YEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFM   83 (318)
T ss_pred             hhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEec
Confidence            44567899999999999998  8899999999876544   366889999999999999999999999999999999997

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=3.4e-13  Score=92.11  Aligned_cols=77  Identities=18%  Similarity=0.207  Sum_probs=66.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--------HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--------AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      +.|...+.||+|+||.|-.+..  +|..+|+|.++.....        .....+|+.+|.+++|||||++++.+..++..
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            4456678999999999999988  8889999999754322        12357999999999999999999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      |||+|||
T Consensus       252 YmVlE~v  258 (475)
T KOG0615|consen  252 YMVLEYV  258 (475)
T ss_pred             EEEEEEe
Confidence            9999997

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=8.5e-13  Score=93.52  Aligned_cols=77  Identities=17%  Similarity=0.212  Sum_probs=67.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc----hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD----YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ..|....+||+|+|+.+|.+..  .|..+|+|.+....    .......+||.+.+.++|+|||++++++.+.++.|||.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            3577789999999999999998  78899999997632    22467899999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      |++
T Consensus        98 ELC  100 (592)
T KOG0575|consen   98 ELC  100 (592)
T ss_pred             Eec
Confidence            975

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.37  E-value=4.1e-13  Score=88.87  Aligned_cols=75  Identities=27%  Similarity=0.359  Sum_probs=65.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.....+|+|+||.|+++..  +|..||||.+..+...   ..-..+|+.+|+++.|+|+|.++.+|.....++|||||+
T Consensus         4 YE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~   83 (396)
T KOG0593|consen    4 YEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYC   83 (396)
T ss_pred             HhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeec
Confidence            34456799999999999998  7899999999776543   255789999999999999999999999989999999995

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.35  E-value=9.4e-13  Score=96.03  Aligned_cols=77  Identities=23%  Similarity=0.287  Sum_probs=67.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +...+.++||.|.||.|+.|.+  .|   ..||+|.++.....  ...|+.|+.||.+.+||||+.|-|+.....+.+||
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIi  708 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMII  708 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEE
Confidence            3445678999999999999998  44   46999999976554  47899999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +|||
T Consensus       709 TEyM  712 (996)
T KOG0196|consen  709 TEYM  712 (996)
T ss_pred             hhhh
Confidence            9998

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.35  E-value=1.7e-12  Score=97.62  Aligned_cols=78  Identities=23%  Similarity=0.461  Sum_probs=66.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      ..+......||.|.||.||.|..   .+.    .||+|.+......  ..+|.+|..+|+.++|+||++++|+|....+.
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence            34455678899999999999998   332    3889988765433  47799999999999999999999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      +|++|||
T Consensus       771 ~i~leyM  777 (1025)
T KOG1095|consen  771 LILLEYM  777 (1025)
T ss_pred             EEEehhc
Confidence            9999998

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=2.2e-12  Score=82.73  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      +.++|..+..||.|.||.||.+..  ++-.||+|.+....-.    ...+.+|+++-..|+||||+++++++.+....||
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            345677789999999999999998  5667999998765422    3678999999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||.
T Consensus       100 ilEya  104 (281)
T KOG0580|consen  100 ILEYA  104 (281)
T ss_pred             EEEec
Confidence            99984

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.28  E-value=2.8e-12  Score=91.02  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|...+.||+|+||.||+|..  ++..||+|.+......   ...+.+|+++++.+.|+||+.++..+....++++|+||
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~   82 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEY   82 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehh
Confidence            455566799999999999988  7788999999765433   36689999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        83 a   83 (808)
T KOG0597|consen   83 A   83 (808)
T ss_pred             h
Confidence            4

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.28  E-value=2.3e-11  Score=82.04  Aligned_cols=76  Identities=11%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC-eeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE-NPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-~~~lv~E~  130 (131)
                      ++.....||+|+.|.|+++.+  ++..+|+|.+......  .+++.+|+.++...+|++||.++|++.... ..+|+|||
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence            444567899999999999999  7889999999644332  477999999999999999999999999888 49999999


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      |
T Consensus       160 M  160 (364)
T KOG0581|consen  160 M  160 (364)
T ss_pred             c
Confidence            8

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.27  E-value=4.6e-11  Score=80.41  Aligned_cols=78  Identities=19%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .++|...+.||+|+||.||.+..  .+..+|+|.+......  ...+.+|+.++..++|+|++++.+++...+..++|+|
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            35677889999999999999998  6788999998754322  2456789999999999999999999998899999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        84 ~~   85 (303)
T cd07869          84 YV   85 (303)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.27  E-value=4.4e-11  Score=83.07  Aligned_cols=76  Identities=12%  Similarity=0.130  Sum_probs=65.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .|.....||+|+||.||++..  .+..+|+|.+......    ...+..|+.++..++|+||+++++.+...+..++|+|
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            466678899999999999988  6788999999754321    2457889999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (381)
T cd05626          82 YI   83 (381)
T ss_pred             cC
Confidence            85

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.26  E-value=4.6e-11  Score=82.35  Aligned_cols=76  Identities=16%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||.+..  .+..+|+|.+.....    ....+.+|+.++..++|+||+++++.+..++..++|+|
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIME   81 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEEC
Confidence            577788999999999999998  678899999975421    12457789999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (364)
T cd05599          82 YL   83 (364)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.26  E-value=3.8e-11  Score=79.39  Aligned_cols=77  Identities=25%  Similarity=0.368  Sum_probs=64.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+|...+.||+|+||.||++.+     .+..+++|.++.....  ...+.+|+.++..++|+|++++++.+..++..++|
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            3566678899999999999976     2457899988765322  35688999999999999999999999988999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        85 ~e~~   88 (266)
T cd05064          85 TEYM   88 (266)
T ss_pred             EEeC
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.26  E-value=3e-11  Score=84.53  Aligned_cols=81  Identities=12%  Similarity=0.281  Sum_probs=66.8

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--C-----CeeEEEEEEecCchh--HHHHHHHHHHHhccC-CccccceeeEEEe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--H-----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIGCCLE  120 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~-----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g~~~~  120 (131)
                      ....+.|.....||+|+||.||+|..  .     +..+|+|.+......  ...+.+|+.++..+. |+||+++++++..
T Consensus        33 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~  112 (400)
T cd05105          33 EFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTK  112 (400)
T ss_pred             eccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEcc
Confidence            34456777889999999999999986  1     236999998754332  356889999999996 9999999999998


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      .+..+||+||+
T Consensus       113 ~~~~~lv~Ey~  123 (400)
T cd05105         113 SGPIYIITEYC  123 (400)
T ss_pred             CCceEEEEEec
Confidence            89999999985

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.26  E-value=7.3e-12  Score=89.15  Aligned_cols=84  Identities=15%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             ecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC
Q 040342           45 FHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET  121 (131)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~  121 (131)
                      ...+++++..+.+.....||+|.||+||+|.|.| .||||.++.....   .+.|.+|+..+++-+|.||+-+.|+|..+
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeeccccc-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            3446677777777888999999999999999975 4999999865544   37899999999999999999999999877


Q ss_pred             CeeEEEEee
Q 040342          122 ENPVLVFEY  130 (131)
Q Consensus       122 ~~~~lv~E~  130 (131)
                      +. .||+.+
T Consensus       461 ~~-AIiTqw  468 (678)
T KOG0193|consen  461 PL-AIITQW  468 (678)
T ss_pred             ce-eeeehh
Confidence            65 777654

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.25  E-value=6e-11  Score=81.02  Aligned_cols=78  Identities=9%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .++|.....||+|+||.||.+..  .+..+++|.+......  ...+.+|+.++..++|+||+++++++..++..++|+|
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            35677888999999999999988  6778889988754222  3568899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        84 ~~   85 (333)
T cd06650          84 HM   85 (333)
T ss_pred             cC
Confidence            85

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.25  E-value=6.9e-12  Score=84.04  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe--CCe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE--TEN  123 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~  123 (131)
                      ....++|...+.|++|.||.||++..  ++..||+|.++.....   +-..++||.+|.+++|+|||.+-.+...  -+.
T Consensus        72 Crsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~  151 (419)
T KOG0663|consen   72 CRSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDK  151 (419)
T ss_pred             cccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccce
Confidence            34556778889999999999999998  7788999999865432   2446899999999999999999887754  457


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .||||||+
T Consensus       152 iy~VMe~~  159 (419)
T KOG0663|consen  152 IYIVMEYV  159 (419)
T ss_pred             eeeeHHHH
Confidence            99999986

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.25  E-value=6.2e-12  Score=92.47  Aligned_cols=73  Identities=22%  Similarity=0.414  Sum_probs=60.1

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           58 DRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ...++||+|+||+||+|.|  .|.    +||+|.+......  ..+++.|+-.|..++|+|+++++|+|..+. +.||++
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            3468899999999999999  433    6899988765433  578999999999999999999999997654 777777


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      ||
T Consensus       778 ~m  779 (1177)
T KOG1025|consen  778 LM  779 (1177)
T ss_pred             hc
Confidence            65

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.24  E-value=7e-11  Score=78.06  Aligned_cols=81  Identities=15%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +.+++++.....||+|+||.||++..  ++..+++|.+...... ...+.+|+.++..++|+|++++++.+..++..+++
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            34556666677899999999999987  6678999988765443 46788999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        84 ~e~~   87 (268)
T cd06624          84 MEQV   87 (268)
T ss_pred             EecC
Confidence            9984

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.24  E-value=2e-11  Score=84.64  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=66.3

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ....++|...+.||+|+||.||++.+       .+..+|+|.+......  ...+.+|+.++..+ +|+||+++++.+..
T Consensus        31 ~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~  110 (375)
T cd05104          31 EFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTV  110 (375)
T ss_pred             ccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc
Confidence            34455677789999999999999864       2457999998754322  35688999999999 79999999999999


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      .+..++|+||+
T Consensus       111 ~~~~~lv~E~~  121 (375)
T cd05104         111 GGPTLVITEYC  121 (375)
T ss_pred             CCcceeeehhc
Confidence            99999999985

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.24  E-value=5.7e-11  Score=81.00  Aligned_cols=77  Identities=8%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||.+..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++.+..++..++++
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            4567788999999999999998  6788999998754321    255789999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        98 e~~  100 (329)
T PTZ00263         98 EFV  100 (329)
T ss_pred             cCC
Confidence            985

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.24  E-value=4.6e-11  Score=82.12  Aligned_cols=76  Identities=14%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|+||.||++..  ++..+++|.+......  ...+.+|+.++..++|+||+++++.+...+..++|+||+
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  154 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFM  154 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecC
Confidence            344567899999999999988  6789999998654322  356889999999999999999999999889999999985

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.24  E-value=1.2e-11  Score=88.88  Aligned_cols=74  Identities=20%  Similarity=0.354  Sum_probs=61.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--C--C--eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--H--D--YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~--~--~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+....+||+|.||.||+|.+  .  |  ..||||..+.....  ...|..|+.+|+.++||||++++|.|.. .+.+||
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~Wiv  468 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMWIV  468 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-cceeEE
Confidence            344567899999999999998  1  2  35889998864322  4779999999999999999999999975 678999


Q ss_pred             Eee
Q 040342          128 FEY  130 (131)
Q Consensus       128 ~E~  130 (131)
                      ||+
T Consensus       469 mEL  471 (974)
T KOG4257|consen  469 MEL  471 (974)
T ss_pred             Eec
Confidence            996

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.24  E-value=7.8e-11  Score=81.67  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||++..  .+..+|+|.+......    ...+..|+.++..++|+||+++++.+..+...++|+|
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E   81 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIME   81 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEe
Confidence            566778999999999999987  7788999998653321    2457889999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (377)
T cd05629          82 FL   83 (377)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.24  E-value=7.5e-11  Score=81.87  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .|...+.||+|+||.||++..  .+..+|+|.+......    ...+..|+.++..++|+||+++++.+..++..++|+|
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            466678999999999999988  6778999998754321    2567889999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (382)
T cd05625          82 YI   83 (382)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.24  E-value=8.3e-11  Score=78.69  Aligned_cols=77  Identities=18%  Similarity=0.270  Sum_probs=65.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +.|...+.||.|+||.||++..  ++..+|+|.+......  ...+.+|+.++..++|+|++++++.+......++|+||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            3567788999999999999988  6788999988654322  34577899999999999999999999888889999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        85 ~   85 (288)
T cd07871          85 L   85 (288)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.23  E-value=1.2e-10  Score=79.42  Aligned_cols=78  Identities=9%  Similarity=0.070  Sum_probs=66.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .++|...+.||+|+||.||++..  .+..+++|.+......  ...+.+|+.++..++|+|++++++++..++..++|+|
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            35677788999999999999998  6778999988754322  3568899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        84 ~~   85 (331)
T cd06649          84 HM   85 (331)
T ss_pred             cC
Confidence            85

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.23  E-value=5.8e-11  Score=77.96  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=65.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|...+.||+|+||.||.+.+ .+..+++|.+.........+..|+.++..++|+|++++++.+...+..++++||+
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           5 ELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            355567899999999999988 6668999988755444567889999999999999999999999888999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.23  E-value=1.1e-10  Score=78.66  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-C-----------------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccce
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-H-----------------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRL  114 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~-----------------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l  114 (131)
                      +.|...+.||+|+||.||.+.+ .                 +..+|+|.+......  ...+.+|+.++..++|+||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            4566778899999999999874 1                 236899988764322  3568899999999999999999


Q ss_pred             eeEEEeCCeeEEEEeeC
Q 040342          115 IGCCLETENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~~~~~lv~E~~  131 (131)
                      ++++...+..++++||+
T Consensus        85 ~~~~~~~~~~~lv~e~~  101 (304)
T cd05096          85 LGVCVDEDPLCMITEYM  101 (304)
T ss_pred             EEEEecCCceEEEEecC
Confidence            99999888999999985

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.22  E-value=1e-10  Score=79.79  Aligned_cols=76  Identities=13%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|.....||+|+||.||++..  .+..+|+|.+......    ...+..|+.++..++|+||+++++.+..++..+||+|
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            566778999999999999998  6788999998754221    2457889999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (333)
T cd05600          82 YV   83 (333)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.22  E-value=1.1e-10  Score=80.94  Aligned_cols=76  Identities=14%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .|.....||+|+||.||.+..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++.+..++..++|+|
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            567788999999999999988  6788999998653221    2457889999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (376)
T cd05598          82 YI   83 (376)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.22  E-value=9.5e-11  Score=77.32  Aligned_cols=72  Identities=28%  Similarity=0.447  Sum_probs=59.5

Q ss_pred             CCeeeeCCCeEEEEEEEC------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFLH------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.||.|.||.||+|.+.      +..|++|.+......  ...+.+|+..+.+++|+||++++|.+...+..++|+||+
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~   83 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC   83 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            467999999999999984      467999999654322  477999999999999999999999999878899999985

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.21  E-value=5.6e-11  Score=78.23  Aligned_cols=78  Identities=15%  Similarity=0.263  Sum_probs=67.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .++|...+.||+|++|.||++.. .+..+++|.+.........+.+|+.++.+++|+|++++++.+...+..++++||+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELM   83 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecc
Confidence            45577788999999999999988 6678999998765544567889999999999999999999998888999999984

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.21  E-value=5.3e-11  Score=79.78  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||++..  .+..+|+|.+.....    ....+.+|+.++..++|+||+++++.+......++|+|
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            566778999999999999998  678899999875332    13557889999999999999999999988889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (291)
T cd05612          82 YV   83 (291)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.21  E-value=8.7e-11  Score=77.22  Aligned_cols=79  Identities=16%  Similarity=0.293  Sum_probs=68.2

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..++|...+.||+|+||.||++.. ++..+++|.+.........+..|+.++..++|+|++++++.+......++++||+
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   83 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYM   83 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEecc
Confidence            345677788999999999999988 6677999998866555567899999999999999999999998888899999985

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.21  E-value=1.2e-10  Score=77.75  Aligned_cols=75  Identities=13%  Similarity=0.121  Sum_probs=63.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |.....||+|+||.||++..  ++..+|+|.+......    ...+.+|+.++..++|+|++++++.+..++..++++||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            55678899999999999987  6788999998754322    23467899999999999999999999888899999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (285)
T cd05605          82 M   82 (285)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.20  E-value=9.6e-11  Score=78.12  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=65.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|...+.||+|+||.||++..  .+..+++|.+......   ...+.+|+.++..++|+|++++.+.+..++..++|+||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            466778899999999999998  6778999998754322   35578899999999999999999999989999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (287)
T cd07848          82 V   82 (287)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.20  E-value=1.3e-10  Score=78.38  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=65.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +.|...+.||+|+||.||++..  .+..+|+|.+......  ...+.+|+.++..++|+|++++++.+..++..++|+||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            3566778899999999999987  6778999998754322  24577899999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        86 ~   86 (309)
T cd07872          86 L   86 (309)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.20  E-value=6.2e-11  Score=77.98  Aligned_cols=78  Identities=14%  Similarity=0.274  Sum_probs=67.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .++|.....||+|+||.||.+.. .+..+++|.+.........+..|+.++..++|+|++++++.+...+..++++||+
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYM   83 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecC
Confidence            34567788999999999999988 6678999988765544567899999999999999999999998888999999985

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.20  E-value=9e-11  Score=82.53  Aligned_cols=79  Identities=16%  Similarity=0.142  Sum_probs=69.4

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..++|...+.||+|+||.||.+.-  .|..+|+|.++.+...    ...+..|-.+|....+++||+|+-.+.+.+++||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            456788899999999999999988  8889999999877654    2557788889999899999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ||||+
T Consensus       219 iMEyl  223 (550)
T KOG0605|consen  219 IMEYL  223 (550)
T ss_pred             EEEec
Confidence            99995

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.19  E-value=1.6e-10  Score=79.27  Aligned_cols=77  Identities=21%  Similarity=0.305  Sum_probs=64.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--C-CeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--H-DYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~-~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|.....||+|+||.||++..  . +..+|+|.+.....    ....+..|+.++..++|+||+++++++...+..++|
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            4577788999999999999986  3 35799998864321    135578899999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       110 ~Ey~  113 (340)
T PTZ00426        110 LEFV  113 (340)
T ss_pred             EeCC
Confidence            9985

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.19  E-value=7e-11  Score=82.69  Aligned_cols=82  Identities=13%  Similarity=0.272  Sum_probs=66.6

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccC-CccccceeeEEE
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIGCCL  119 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g~~~  119 (131)
                      +....+++.....||+|+||.||++.+       .+..||+|.+......  ...+..|+.++..+. |+||+++++.+.
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~  111 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT  111 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence            334455677788999999999999986       2357999999754322  356889999999997 999999999999


Q ss_pred             eCCeeEEEEeeC
Q 040342          120 ETENPVLVFEYV  131 (131)
Q Consensus       120 ~~~~~~lv~E~~  131 (131)
                      .....++|+||+
T Consensus       112 ~~~~~~iv~E~~  123 (401)
T cd05107         112 KGGPIYIITEYC  123 (401)
T ss_pred             cCCCcEEEEecc
Confidence            888999999985

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.19  E-value=1e-10  Score=83.26  Aligned_cols=80  Identities=18%  Similarity=0.128  Sum_probs=70.3

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ....+|.....||+|.|+.|..+..  .+..||+|.++.....   .+.+.+|+.+|..+.|||||+++.+......+|+
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            4456788889999999999999998  7889999999876543   3568899999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||.
T Consensus       133 V~eya  137 (596)
T KOG0586|consen  133 VMEYA  137 (596)
T ss_pred             EEEec
Confidence            99984

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.19  E-value=1.9e-10  Score=79.36  Aligned_cols=76  Identities=13%  Similarity=0.083  Sum_probs=64.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|+.++..++|+|++++++.+......+||+|
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E   81 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIME   81 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEc
Confidence            567788999999999999987  6788999998753221    2457789999999999999999999999899999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (363)
T cd05628          82 FL   83 (363)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.19  E-value=2.5e-10  Score=77.11  Aligned_cols=76  Identities=8%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|+||.||++..  .+..+++|.+......  ...+.+|+.++..++|+||+++++.+..++..++++||+
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence            567788999999999999988  6778888888654222  355889999999999999999999999999999999985

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.19  E-value=1.8e-12  Score=89.94  Aligned_cols=76  Identities=18%  Similarity=0.240  Sum_probs=64.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhH--HHHHHHHHHHhccC-CccccceeeEEEeCC-eeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAA--EFCFNNIVFASQMN-HKNVIRLIGCCLETE-NPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~--~~~~~e~~~l~~l~-h~niv~l~g~~~~~~-~~~lv~E  129 (131)
                      .|.....||.|.||.||.+..  .+..||+|.++..-...  ..-++|+..|+++. |+||+++..++.+.+ .+++|||
T Consensus        11 RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE   90 (538)
T KOG0661|consen   11 RYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFE   90 (538)
T ss_pred             HHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHH
Confidence            455567899999999999998  78889999987654333  33579999999999 999999999998877 9999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      ||
T Consensus        91 ~M   92 (538)
T KOG0661|consen   91 FM   92 (538)
T ss_pred             hh
Confidence            97

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.19  E-value=3.5e-10  Score=74.62  Aligned_cols=77  Identities=14%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+|.....||+|+||.||++..  ++..+++|.+...... ...+.+|+.++..++|+|++++++.+...+..++|+||+
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            4577788999999999999997  6788999988754322 345778999999999999999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.18  E-value=1.2e-10  Score=81.28  Aligned_cols=80  Identities=21%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----------h-----HHHHHHHHHHHhccCCccccce
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----------A-----AEFCFNNIVFASQMNHKNVIRL  114 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----------~-----~~~~~~e~~~l~~l~h~niv~l  114 (131)
                      ...+.|.....||+|.||.|-.+..  .+..+|+|.+.....          .     ...+.+||.+|++++|+|||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            3456788889999999999999988  788899999864321          1     1468899999999999999999


Q ss_pred             eeEEEe--CCeeEEEEeeC
Q 040342          115 IGCCLE--TENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~--~~~~~lv~E~~  131 (131)
                      +.+..+  .+.+|||+||+
T Consensus       174 iEvLDDP~s~~~YlVley~  192 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYC  192 (576)
T ss_pred             EEeecCcccCceEEEEEec
Confidence            998854  56899999996

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.18  E-value=2.4e-10  Score=76.37  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |...+.||+|+||.||++..  ++..+|+|.+......    ...+.+|+.++..++|+|++.+.+.+..++..++++||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            55678899999999999987  7889999988754322    23577899999999999999999999888899999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (285)
T cd05631          82 M   82 (285)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.18  E-value=6e-11  Score=81.99  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=72.0

Q ss_pred             cChhhHHHHhhhc--CCCCCCcceecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHH
Q 040342           23 NGKVFLEKLIKSC--DNKRNPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNI  100 (131)
Q Consensus        23 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~  100 (131)
                      .++..+.+++...  ++..+..+.+....   .+..+...+.||+|.||.||+|.|.|..||||.+...+.  ..+.+|.
T Consensus       180 ~~~stl~Dll~~~~tSGSGSGlplLVQRT---iarqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE--~SWfrEt  254 (513)
T KOG2052|consen  180 AGDSTLKDLLDDLETSGSGSGLPLLVQRT---IARQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDE--RSWFRET  254 (513)
T ss_pred             cCCccHHHHHHhhccCCCCCCchhHhHHh---hhheeEEEEEecCccccceeeccccCCceEEEEecccch--hhhhhHH
Confidence            4555566666433  33333444333332   234567788999999999999999999999999986543  3466666


Q ss_pred             HHHh--ccCCccccceeeEEEeC----CeeEEEEee
Q 040342          101 VFAS--QMNHKNVIRLIGCCLET----ENPVLVFEY  130 (131)
Q Consensus       101 ~~l~--~l~h~niv~l~g~~~~~----~~~~lv~E~  130 (131)
                      +|..  .++|+||+.+++.-..+    ..++||++|
T Consensus       255 EIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdY  290 (513)
T KOG2052|consen  255 EIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDY  290 (513)
T ss_pred             HHHHHHHhccchhhhhhhccccCCCceEEEEEeeec
Confidence            6655  47899999999876543    268899987

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.17  E-value=1.2e-10  Score=76.63  Aligned_cols=76  Identities=18%  Similarity=0.265  Sum_probs=64.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|.....||+|+||.||.+.+ ++..+++|.+.........+.+|+.++..++|+|++++++++...+..++++||+
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcC
Confidence            345567899999999999988 5567999988765444567889999999999999999999998888899999984

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.17  E-value=2.6e-10  Score=76.69  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +.|.....||+|+||.||++..  .+..+++|.+......  ...+.+|+.++..++|+||+++++.+......++|+||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            3466678899999999999988  6778999988644322  34577899999999999999999999988999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        86 ~   86 (301)
T cd07873          86 L   86 (301)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>PHA02988 hypothetical protein; Provisional

Probab=99.17  E-value=5.5e-10  Score=74.69  Aligned_cols=86  Identities=17%  Similarity=0.375  Sum_probs=66.6

Q ss_pred             CcceecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceee
Q 040342           41 PIRCFHENELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIG  116 (131)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g  116 (131)
                      +++.++.++++     ......+++|+++.||+|.++|..+|+|.+......    ...+.+|+.+|.+++|+||++++|
T Consensus        11 ~~~~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g   85 (283)
T PHA02988         11 DIKCIESDDID-----KYTSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYG   85 (283)
T ss_pred             cceecCHHHcC-----CCCCeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEee
Confidence            34445555552     222367899999999999998899999998754332    255779999999999999999999


Q ss_pred             EEEe----CCeeEEEEeeC
Q 040342          117 CCLE----TENPVLVFEYV  131 (131)
Q Consensus       117 ~~~~----~~~~~lv~E~~  131 (131)
                      ++..    ....++++||+
T Consensus        86 ~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         86 FIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEecccCCCceEEEEEeC
Confidence            9876    34678999985

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.17  E-value=2.2e-10  Score=79.39  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=67.1

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      ...++|...+.||+|+||.||.+..  .+..+|+|.+.....    ....+..|+.++..++|+|++++++.+..+...+
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~  119 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY  119 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE
Confidence            3456788889999999999999998  677899999864321    1245778999999999999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus       120 lv~Ey~  125 (370)
T cd05621         120 MVMEYM  125 (370)
T ss_pred             EEEcCC
Confidence            999985

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.16  E-value=5.1e-10  Score=74.48  Aligned_cols=76  Identities=9%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|+||.||++..  .+..+++|.+......  ...+..|+.++..++|+|++++++.+...+..++++||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            355578899999999999987  6778999988654222  356889999999999999999999999999999999985

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.16  E-value=2.7e-10  Score=76.14  Aligned_cols=77  Identities=17%  Similarity=0.255  Sum_probs=65.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ++|.....||+|++|.||++..  ++..+++|.+......  ...+.+|+.++..++|+|++++++++...+..++|+||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            4567778999999999999988  6788999998754322  24567899999999999999999999989999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        85 ~   85 (291)
T cd07844          85 L   85 (291)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.16  E-value=3.2e-10  Score=74.37  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=67.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+|...+.||.|.||.||.+...+..+++|.+.........+..|+.++..++|+|++++++.+...+..++++||+
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   82 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM   82 (256)
T ss_pred             hhccceeeeecCCCceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence            45677889999999999999887788999999866544567889999999999999999999998888999999985

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.16  E-value=3e-10  Score=77.51  Aligned_cols=76  Identities=13%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|..++..++|+|++.+++++..++..++|+|
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMD   81 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEe
Confidence            567788999999999999988  6788999998753221    2457788899999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (331)
T cd05597          82 YY   83 (331)
T ss_pred             cC
Confidence            85

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.16  E-value=1.5e-10  Score=76.88  Aligned_cols=78  Identities=12%  Similarity=0.087  Sum_probs=66.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .++|.....||.|.||.||.+..  .+..+++|.+...... ...+..|+.++..++|+|++++++.+..+...++|+||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence            34566678899999999999988  5788999998765433 35688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        84 ~   84 (280)
T cd06611          84 C   84 (280)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.15  E-value=1.3e-10  Score=76.69  Aligned_cols=77  Identities=14%  Similarity=0.328  Sum_probs=66.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+|...+.||+|+||.||++..  .+..+++|.+.........+.+|+.++..++|+|++++++.+...+..++++||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   84 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeC
Confidence            3456678899999999999998  6788999998765444567889999999999999999999999888999999985

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=1.1e-12  Score=86.21  Aligned_cols=76  Identities=22%  Similarity=0.275  Sum_probs=60.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceee-EEEeCC-eeEEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIG-CCLETE-NPVLVF  128 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g-~~~~~~-~~~lv~  128 (131)
                      +|.+.++||.|+||.||++..  +|..+|.|.++-....   .+.+..|+.+|++++|||||++++ .+..+. .++|+|
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivm   99 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVM   99 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHH
Confidence            455568899999999999987  8889999988743322   367899999999999999999998 444433 478888


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       100 E~c  102 (375)
T KOG0591|consen  100 ELC  102 (375)
T ss_pred             Hhh
Confidence            874

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.15  E-value=8.3e-11  Score=77.31  Aligned_cols=79  Identities=16%  Similarity=0.298  Sum_probs=68.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +..+|...+.||.|+||.||.+.. .+..+++|.+...... ...+..|+.++..++|+|++++++.+...+..++++||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   83 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITEL   83 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEee
Confidence            445677788999999999999998 7778999998766543 46688999999999999999999999998999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        84 ~   84 (261)
T cd05148          84 M   84 (261)
T ss_pred             c
Confidence            5

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.15  E-value=3.4e-10  Score=75.65  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=65.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +.+|...+.||+|+||.||.+..  .+..+++|.+......  ...+.+|+.++..++|+|++++.+++..++..++++|
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEe
Confidence            45677788999999999999987  6788999998654322  2456789999999999999999999988889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        84 ~~   85 (291)
T cd07870          84 YM   85 (291)
T ss_pred             cc
Confidence            85

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.15  E-value=5.1e-10  Score=76.16  Aligned_cols=71  Identities=10%  Similarity=0.008  Sum_probs=60.3

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  ++..+|+|.+.....    ....+..|+.++..++|+|++++.+.+...+..++|+||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~   77 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYA   77 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCC
Confidence            3689999999999987  678899999875321    1245678999999999999999999999899999999985

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.15  E-value=3.5e-10  Score=77.03  Aligned_cols=76  Identities=17%  Similarity=0.077  Sum_probs=65.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|.....||+|+||.||++..  .+..+|+|.+.....    ....+..|+.++..++|+|++.+.+.+...+..++|+|
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVME   81 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEEC
Confidence            567788999999999999988  778899999985432    13557888999999999999999999988889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (330)
T cd05601          82 YQ   83 (330)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.14  E-value=1.6e-10  Score=80.03  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=66.2

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..++|...+.||+|+||.||++..  .+..+|+|.+......    ...+..|+.++..++|+|++++++++..+...++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            345677788999999999999988  6788999998753211    2447789999999999999999999998899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       121 v~Ey~  125 (370)
T cd05596         121 VMEYM  125 (370)
T ss_pred             EEcCC
Confidence            99985

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.14  E-value=7.3e-10  Score=73.63  Aligned_cols=75  Identities=23%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.....||+|+||.||++..  .+..+++|.+......  ...+.+|+.++..++|+|++++++.+..++..++|+||+
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            44567899999999999987  6778999987654322  356888999999999999999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.14  E-value=3.2e-10  Score=78.48  Aligned_cols=76  Identities=14%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCC-----eeE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETE-----NPV  125 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-----~~~  125 (131)
                      +|+..+.||+|+||.||++..  ++..+|+|.+.....   ....+.+|+.++..++|+||+++++.+...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            356778999999999999987  778899998864321   2356789999999999999999999987665     789


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        81 lv~e~~   86 (372)
T cd07853          81 VVTELM   86 (372)
T ss_pred             EEeecc
Confidence            999985

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.14  E-value=2.3e-10  Score=76.21  Aligned_cols=87  Identities=14%  Similarity=0.141  Sum_probs=69.7

Q ss_pred             ecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEE--
Q 040342           45 FHENELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCL--  119 (131)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~--  119 (131)
                      +.++.+..+.++|.....||+|+||.||++..  .+..+++|.+.........+..|+.++..+ +|+|++++++++.  
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   87 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK   87 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence            33455666778898899999999999999988  677899998875443345677899999988 6999999999874  


Q ss_pred             ---eCCeeEEEEeeC
Q 040342          120 ---ETENPVLVFEYV  131 (131)
Q Consensus       120 ---~~~~~~lv~E~~  131 (131)
                         .++..++++||+
T Consensus        88 ~~~~~~~~~lv~e~~  102 (286)
T cd06638          88 DVKNGDQLWLVLELC  102 (286)
T ss_pred             ccCCCCeEEEEEeec
Confidence               345689999985

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.14  E-value=2.3e-10  Score=75.27  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=65.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.|.....||+|+||.||.+.. ++..+++|.+.........+.+|+.++..++|+|++++++... .+..++++||+
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYM   82 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcC
Confidence            45667788999999999999988 7788999998866555567889999999999999999998764 46789999974

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.14  E-value=5.4e-10  Score=76.00  Aligned_cols=71  Identities=10%  Similarity=0.015  Sum_probs=60.4

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  ++..+|+|.+.....    ....+..|+.++..++|+||+.+.+.+...+..++|+||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   77 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYA   77 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCC
Confidence            3689999999999987  778899999875321    1245778999999999999999999999999999999985

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.14  E-value=3.2e-10  Score=78.58  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      ++....++|...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|+.++..++|+|++++++.+..+.
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  116 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC
Confidence            3344557888899999999999999988  6778999998643211    245778899999999999999999999999


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       117 ~~~lv~Ey~  125 (371)
T cd05622         117 YLYMVMEYM  125 (371)
T ss_pred             EEEEEEcCC
Confidence            999999985

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.13  E-value=5.5e-10  Score=73.64  Aligned_cols=77  Identities=25%  Similarity=0.386  Sum_probs=65.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---h-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---A-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  ++..+++|.+.....   . ...+.+|+.++..++|+|++++++.+...+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4677788999999999999988  778899998764321   1 245788999999999999999999998888999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 e~~   84 (267)
T cd08228          82 ELA   84 (267)
T ss_pred             Eec
Confidence            985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.13  E-value=5.1e-10  Score=74.41  Aligned_cols=76  Identities=20%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||.|++|.||++..  ++..+++|.+......  ...+..|+.++..++|+|++++++.+...+..++|+||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            466678999999999999998  6788999988754322  345678999999999999999999999999999999985

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.13  E-value=2.5e-11  Score=88.19  Aligned_cols=73  Identities=16%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             CcCCeeeeCCCeEEEEEEE---CCe--eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           58 DRQKVITTGLGYELFKGFL---HDY--PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~---~~~--~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ...+.||+|+||.|+.|.|   .|.  .||||++......  ...|.+|+.+|.+++|+|+++|+|+... ..++||+|+
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~EL  191 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFEL  191 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhh
Confidence            3357899999999999999   343  5899999875544  4789999999999999999999999986 678889886


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       192 a  192 (1039)
T KOG0199|consen  192 A  192 (1039)
T ss_pred             c
Confidence            3

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.13  E-value=4e-10  Score=78.23  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccC-CccccceeeEEEeCCeeE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPV  125 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~  125 (131)
                      ....|.....||.|.||.||.+..  +|..+|+|.+......    ...+.+|+.+|..+. |+|++.+.+.+......+
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            345677788999999999999998  6889999999765442    257899999999998 999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+|++
T Consensus       113 lvmEL~  118 (382)
T KOG0032|consen  113 LVMELC  118 (382)
T ss_pred             EEEEec
Confidence            999985

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.12  E-value=5.8e-10  Score=76.91  Aligned_cols=76  Identities=13%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|+.++..++|+|++++++.+...+..++|+|
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E   81 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIME   81 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence            566778999999999999988  6788999998753221    2457789999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (360)
T cd05627          82 FL   83 (360)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.12  E-value=4.3e-11  Score=74.41  Aligned_cols=75  Identities=24%  Similarity=0.346  Sum_probs=63.3

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.||+|+++..  .+..||+|........   .....+|+-+++.+.|+|||++++...++..+-+|+||+
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~c   83 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHh
Confidence            34456799999999999987  6678999988765433   366889999999999999999999999988999999974

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.12  E-value=1.4e-10  Score=79.11  Aligned_cols=79  Identities=16%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeC-
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLET-  121 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~-  121 (131)
                      ..++|...+.||+|+||.||++..       .+..||+|.+......  ...+.+|+.++..+ +|+||+++++.+... 
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            445677789999999999999974       2356999998754322  35688999999999 799999999988653 


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus        85 ~~~~lv~ey~   94 (338)
T cd05102          85 GPLMVIVEFC   94 (338)
T ss_pred             CceEEEEecC
Confidence            4578999985

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.12  E-value=1.4e-10  Score=77.72  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=63.7

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCcc-ccceeeEEEeCC------ee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKN-VIRLIGCCLETE------NP  124 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~n-iv~l~g~~~~~~------~~  124 (131)
                      |...+.||+|.||.||+|..  .|..||+|.+......   .....+|+.++..++|+| |+.+.+.+...+      .+
T Consensus        13 ~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l   92 (323)
T KOG0594|consen   13 YEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKL   92 (323)
T ss_pred             HHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceE
Confidence            44456799999999999998  7889999999865442   456789999999999999 999999998766      78


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      +||+||+
T Consensus        93 ~lvfe~~   99 (323)
T KOG0594|consen   93 YLVFEFL   99 (323)
T ss_pred             EEEEEee
Confidence            9999985

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.11  E-value=6.7e-10  Score=75.83  Aligned_cols=76  Identities=12%  Similarity=0.031  Sum_probs=63.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|..++..++|+||+.+.+++...+..++|+|
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~E   81 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMD   81 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence            567788999999999999988  6778999998753211    2447788889999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 y~   83 (331)
T cd05624          82 YY   83 (331)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.11  E-value=1.6e-10  Score=80.21  Aligned_cols=81  Identities=19%  Similarity=0.296  Sum_probs=66.0

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--C-----CeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--H-----DYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~-----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ....++|...+.||+|+||.||++..  .     +..+|+|.+......  ...+.+|+.++..+ +|+||+++++.+..
T Consensus        34 ~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~  113 (374)
T cd05106          34 EFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH  113 (374)
T ss_pred             cccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC
Confidence            34455778889999999999999875  2     246999998754322  35578999999999 79999999999999


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ....++|+||+
T Consensus       114 ~~~~~lv~ey~  124 (374)
T cd05106         114 GGPVLVITEYC  124 (374)
T ss_pred             CCCeEEeHhhc
Confidence            89999999985

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.11  E-value=3.3e-10  Score=77.62  Aligned_cols=76  Identities=17%  Similarity=0.147  Sum_probs=65.3

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|.....||+|+||.||++..  .+..+|+|.+.....    ....+..|+.++..++|+|++++++.+..++..++|+|
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVME   81 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEc
Confidence            567788999999999999998  688999999875432    23567889999999999999999999998999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (350)
T cd05573          82 YM   83 (350)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.11  E-value=6.6e-10  Score=73.34  Aligned_cols=77  Identities=23%  Similarity=0.292  Sum_probs=64.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--C---CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--H---DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~---~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|...+.||+|+||.||+|.+  .   ...+++|.+......  ...+..|+.++..++|+|++++++.+...+..+++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            4577789999999999999987  2   246899988754332  35688999999999999999999999888899999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        84 ~e~~   87 (266)
T cd05033          84 TEYM   87 (266)
T ss_pred             EEcC
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.11  E-value=7.8e-10  Score=73.57  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=63.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.+|.||++..  ++..+++|.+......   ...+.+|+.++..++|+|++++++.+..++..++|+||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (285)
T cd07861           2 YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFL   81 (285)
T ss_pred             ceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecC
Confidence            55678899999999999988  6788999988643222   356788999999999999999999999989999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.11  E-value=1.9e-11  Score=87.50  Aligned_cols=75  Identities=24%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |.....||.|+||.||-+..  +...||||.+.-+...    .+.+..|+..|.++.|||.+.+.||+......||||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            34456799999999999988  7788999998754433    46789999999999999999999999998899999999


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       108 C  108 (948)
T KOG0577|consen  108 C  108 (948)
T ss_pred             H
Confidence            5

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.11  E-value=4e-10  Score=75.14  Aligned_cols=76  Identities=9%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|.||.||.+..  .+..+++|.+......  ...+.+|+.++..++|+|++++++.+...+..++|+||+
T Consensus         6 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (284)
T cd06620           6 DLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFM   85 (284)
T ss_pred             HHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecC
Confidence            455567899999999999988  5788999987654322  356889999999999999999999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.11  E-value=8.6e-10  Score=73.36  Aligned_cols=76  Identities=29%  Similarity=0.383  Sum_probs=64.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|.....||+|.||.||++..  ++..+++|.+......   ...+.+|+.++..++|+|++++++.+..+...++++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~   81 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEY   81 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEec
Confidence            466678899999999999988  6788999988643321   24578899999999999999999999988899999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (286)
T cd07847          82 C   82 (286)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.11  E-value=5.8e-10  Score=73.01  Aligned_cols=70  Identities=27%  Similarity=0.385  Sum_probs=60.0

Q ss_pred             eeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||++..  ++..+++|.+......  ...+.+|+.++..++|+|++++++.+......++|+||+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   75 (252)
T cd05084           2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELV   75 (252)
T ss_pred             ccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeec
Confidence            589999999999988  7788999987643222  356889999999999999999999999888999999984

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.10  E-value=1e-09  Score=73.78  Aligned_cols=77  Identities=19%  Similarity=0.317  Sum_probs=66.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..|...+.||+|+||.||++..  ++..+++|.+...... ...+..|+.++..++|+|++++++.+..++..++|+||+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            4567788999999999999987  7788999998754433 356788999999999999999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.10  E-value=9.7e-10  Score=74.98  Aligned_cols=71  Identities=11%  Similarity=0.034  Sum_probs=60.4

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  .+..+|+|.+.....    ....+.+|+.++..++|+|++++.+.+...+..++|+||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~   77 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYV   77 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCC
Confidence            3689999999999987  678899999875321    1245788999999999999999999999899999999985

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.10  E-value=5.1e-10  Score=73.52  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=64.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|.||.||.+.+ .+..+++|.+.........+.+|+.++..++|+|++++++.+...+..++++||+
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecC
Confidence            355678899999999999988 6567899988755444456888999999999999999999998888999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.10  E-value=4.3e-10  Score=74.78  Aligned_cols=70  Identities=21%  Similarity=0.337  Sum_probs=57.2

Q ss_pred             eeeeCCCeEEEEEEE--CC------------------------eeEEEEEEecCchh-HHHHHHHHHHHhccCCccccce
Q 040342           62 VITTGLGYELFKGFL--HD------------------------YPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRL  114 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~------------------------~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l  114 (131)
                      .||+|+||.||+|..  .+                        ..+++|.+...... ...+..++.++..++|+|++++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            589999999999874  11                        24788887654333 3567888899999999999999


Q ss_pred             eeEEEeCCeeEEEEeeC
Q 040342          115 IGCCLETENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~~~~~lv~E~~  131 (131)
                      ++++......++|+||+
T Consensus        82 ~~~~~~~~~~~lv~ey~   98 (274)
T cd05076          82 HGVCVRGSENIMVEEFV   98 (274)
T ss_pred             EEEEEeCCceEEEEecC
Confidence            99999989999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.10  E-value=9.6e-10  Score=73.47  Aligned_cols=75  Identities=12%  Similarity=0.118  Sum_probs=62.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |...+.||+|+||.||.+..  ++..+|+|.+......    ...+.+|+.++..++|+|++.+.+.+..++..++++||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            44567899999999999988  6788999998754322    24467899999999999999999999888999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (285)
T cd05632          82 M   82 (285)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=8.6e-10  Score=74.66  Aligned_cols=69  Identities=12%  Similarity=0.077  Sum_probs=58.8

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+|+||.||++..  ++..+|+|.+.....    ....+..|+.++..++|+||+++.+.+...+..++|+||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   75 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFI   75 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCC
Confidence            68999999999998  677899999875321    1255778999999999999999999999889999999985

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.09  E-value=5.1e-10  Score=73.68  Aligned_cols=78  Identities=12%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ....|...+.||+|+||.||.+.. .+..+++|.+.........+.+|+.++..++|+|++++.+.+.. ...++++||+
T Consensus         4 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~   82 (260)
T cd05073           4 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFM   82 (260)
T ss_pred             cccceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeC
Confidence            345677788999999999999987 66679999887654445678899999999999999999998876 7789999985

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.09  E-value=8.6e-10  Score=84.56  Aligned_cols=74  Identities=20%  Similarity=0.386  Sum_probs=62.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..+...+.||+|+||.||+|..  .+..||+|.+......   ...|+..+.+++|+||++++|++...+..++||||+
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~  765 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI---PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYI  765 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc---cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCC
Confidence            4566778999999999999997  7788999988654322   234578899999999999999999989999999996

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.09  E-value=9.6e-10  Score=83.10  Aligned_cols=77  Identities=14%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +.|...+.||+|+||.||++..  .+..+|+|.+......    ...+.+|+.++..++|+|++++++.+..++..++++
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            3567778999999999999988  6788999998753211    356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 EY~   84 (932)
T PRK13184         82 PYI   84 (932)
T ss_pred             EcC
Confidence            985

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.09  E-value=4.3e-10  Score=74.95  Aligned_cols=76  Identities=7%  Similarity=0.056  Sum_probs=64.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|+||.||++..  .+..+++|.+......  ...+.+|+.++..++|+|++++++.+...+..++++||+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            455678899999999999998  6788999988653222  356889999999999999999999999899999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.09  E-value=1.2e-09  Score=73.17  Aligned_cols=77  Identities=12%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|.....||.|+||.||++..  .+..+++|.+...... ...+..|+.++..+.|+|++++.+.+..+...++|+||+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            4566678899999999999988  5788999998765443 466888999999999999999999998888999999985

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.09  E-value=7.1e-10  Score=72.70  Aligned_cols=76  Identities=20%  Similarity=0.329  Sum_probs=65.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|...+.||+|+||.||++.+ .+..+++|.+.........+..|+.++..++|+|++++++.+......++++||+
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            455578899999999999988 6778999988765444567889999999999999999999998888899999984

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.09  E-value=1.8e-09  Score=70.81  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|+||.||.+..  ++..+++|.+......  ...+..|+.++..++|+|++++.+.+......++++||+
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            45678899999999999988  6788999988643322  356788999999999999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=1.5e-09  Score=71.42  Aligned_cols=77  Identities=14%  Similarity=0.285  Sum_probs=65.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh------HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ++|...+.||+|++|.||.+..  .+..+++|.+......      ...+.+|+.++..++|+|++++++.+...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4677889999999999999987  6788999988643221      2457889999999999999999999999899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        82 v~e~~   86 (263)
T cd06625          82 FMEYM   86 (263)
T ss_pred             EEEEC
Confidence            99985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.09  E-value=8.1e-10  Score=75.26  Aligned_cols=75  Identities=20%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeC-----CeeEE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLET-----ENPVL  126 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~~~l  126 (131)
                      |.....||+|+||.||.+..  .+..+|+|.+.....   ....+.+|+.++..++|+||+++.+++...     ...++
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence            45578899999999999987  678999998874321   134578999999999999999999987543     24799


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        82 v~e~~   86 (338)
T cd07859          82 VFELM   86 (338)
T ss_pred             EEecC
Confidence            99985

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.08  E-value=5.1e-10  Score=74.34  Aligned_cols=79  Identities=15%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      .+++|.....||+|+||.||.+..       .+..+++|.+......  ...+.+|+.++..++|+|++++++.+..+..
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            456788889999999999999875       2356899988643322  3568899999999999999999999988889


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus        84 ~~lv~e~~   91 (277)
T cd05062          84 TLVIMELM   91 (277)
T ss_pred             eEEEEecC
Confidence            99999985

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.08  E-value=8.3e-10  Score=73.91  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=64.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|...+.||.|.+|.||++..  ++..+++|.+......   ...+..|+.++..++|+|++++++.+..++..++|+||
T Consensus         3 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (294)
T PLN00009          3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEY   82 (294)
T ss_pred             ceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEec
Confidence            566778899999999999988  6778999988643221   24578899999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        83 ~   83 (294)
T PLN00009         83 L   83 (294)
T ss_pred             c
Confidence            5

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.08  E-value=1.1e-09  Score=71.67  Aligned_cols=75  Identities=16%  Similarity=0.175  Sum_probs=64.0

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.+|.+|++..  ++..+++|.+....   .....+..|+.+++.++|+|++++++.+......++++||+
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08529           2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYA   81 (256)
T ss_pred             ceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeC
Confidence            55678899999999999998  67889999886432   22466889999999999999999999999889999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.08  E-value=8.7e-10  Score=76.41  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=66.5

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecC----ch-h-HHHHHHHHHHHhccC-CccccceeeEEEeCCe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNS----DY-A-AEFCFNNIVFASQMN-HKNVIRLIGCCLETEN  123 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~----~~-~-~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~  123 (131)
                      ..+.|.....||+|+||.|+.+..  .+..+|+|.+...    .. . ...+.+|+.+++.++ ||||++++.+......
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            345778889999999999999988  7789999977653    11 1 345668999999999 9999999999999889


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus        95 ~~ivmEy~  102 (370)
T KOG0583|consen   95 IYIVMEYC  102 (370)
T ss_pred             EEEEEEec
Confidence            99999995

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.08  E-value=1e-09  Score=72.64  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=58.1

Q ss_pred             eeeeCCCeEEEEEEE-C---CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-H---DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~---~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||++.. .   +..+++|.+......  ...+.+|+.++..++|+|++++++.+......++|+||+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   77 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFC   77 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECC
Confidence            589999999999986 2   346888887654322  246888999999999999999999998888899999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.08  E-value=1.6e-09  Score=72.01  Aligned_cols=75  Identities=23%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |+....||.|.||.||.+..  .+..+++|.+......  ...+.+|+.++..++|+|++++++.+..+...++|+||+
T Consensus         6 y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            45567799999999999987  6788999988754322  366889999999999999999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.07  E-value=5.5e-10  Score=74.34  Aligned_cols=76  Identities=20%  Similarity=0.309  Sum_probs=64.3

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|.....||.|.+|.||++..  ++..+++|.+......   ...+..|+.++..++|+|++++.+.+..++..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            466678899999999999988  6788999988643322   24688999999999999999999999888999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        81 ~   81 (284)
T cd07860          81 L   81 (284)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.07  E-value=6.4e-10  Score=73.18  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|...+.||+|+||.||.+.. .+..+++|.+.........+.+|+.++.+++|+|++++++.+. ....++++||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEec
Confidence            3456678899999999999988 6677999998765544567899999999999999999998875 45688999985

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.07  E-value=1.5e-09  Score=72.52  Aligned_cols=75  Identities=13%  Similarity=0.126  Sum_probs=62.7

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|+.++..++|++++.+.+.+...+..++++||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            44567899999999999988  6788999988653221    24467899999999999999999999888999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (285)
T cd05630          82 M   82 (285)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.07  E-value=1.6e-09  Score=73.52  Aligned_cols=71  Identities=11%  Similarity=0.066  Sum_probs=59.2

Q ss_pred             CeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..     .+..+|+|.+......   ...+..|+.++..++|+||+++++.+..++..++|+||+
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~   80 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFL   80 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCC
Confidence            5689999999998764     4678999998754322   244678999999999999999999999999999999985

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.07  E-value=8.7e-10  Score=72.90  Aligned_cols=79  Identities=15%  Similarity=0.224  Sum_probs=63.5

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeC------Ce
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLET------EN  123 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~------~~  123 (131)
                      +.+.|...+.||+|+||.||++..  .+..+++|.+.........+..|+.++..+ +|+|++++.+.+...      ..
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ   83 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcE
Confidence            345566678899999999999988  677899999876544445678899989888 699999999998652      45


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus        84 ~~iv~e~~   91 (272)
T cd06637          84 LWLVMEFC   91 (272)
T ss_pred             EEEEEEcC
Confidence            78999985

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.07  E-value=1.1e-09  Score=73.44  Aligned_cols=75  Identities=23%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh------HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      |...+.||+|.+|.||++..  .+..+++|.+......      ...+..|+.++..++|+|++++++.+...+..++|+
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            45567899999999999998  6788999998754322      245678999999999999999999999888999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 e~~   84 (298)
T cd07841          82 EFM   84 (298)
T ss_pred             ccc
Confidence            985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.07  E-value=1.3e-09  Score=71.23  Aligned_cols=70  Identities=26%  Similarity=0.388  Sum_probs=60.3

Q ss_pred             eeeeCCCeEEEEEEE-CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||++.. ++..+++|.+......  ...+.+|+.++..++|+|++++.+.+......++++||+
T Consensus         2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   74 (250)
T cd05085           2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELV   74 (250)
T ss_pred             ccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECC
Confidence            589999999999988 7778999988754332  346889999999999999999999999888999999984

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.07  E-value=1.4e-09  Score=72.81  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|.....||+|+||.||.+..  ++..+++|.+......    ...+.+|+.++..++|+|++++++.+..+...++++|
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            566778999999999999998  6788999998754321    3557889999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (290)
T cd05580          82 YV   83 (290)
T ss_pred             cC
Confidence            85

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.06  E-value=1.9e-09  Score=72.43  Aligned_cols=77  Identities=19%  Similarity=0.319  Sum_probs=65.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..|.....||+|.+|.||++..  .+..+++|.+...... ...+.+|+.++..++|+|++++.+.+..+...++|+||+
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            3566678899999999999987  6778999988754433 456888999999999999999999999889999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.06  E-value=1e-09  Score=73.67  Aligned_cols=80  Identities=21%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC----
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE----  122 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~----  122 (131)
                      ...++|...+.||+|.||.||++..  .+..+++|.+......   ...+.+|+.++..++|+|++++++.+....    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            3456788889999999999999998  6788999998753321   245778999999999999999999886544    


Q ss_pred             ------eeEEEEeeC
Q 040342          123 ------NPVLVFEYV  131 (131)
Q Consensus       123 ------~~~lv~E~~  131 (131)
                            ..++++||+
T Consensus        84 ~~~~~~~~~lv~e~~   98 (302)
T cd07864          84 FKKDKGAFYLVFEYM   98 (302)
T ss_pred             ccccCCcEEEEEccc
Confidence                  688999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.06  E-value=2.3e-09  Score=72.93  Aligned_cols=71  Identities=10%  Similarity=0.008  Sum_probs=59.9

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  .+..+|+|.+.....    ....+..|+.++..++|+||+.+.+.+...+..++|+||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~   77 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYA   77 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCC
Confidence            3689999999999987  778899999875321    1245678889999999999999999999889999999985

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.06  E-value=1.4e-09  Score=71.64  Aligned_cols=77  Identities=22%  Similarity=0.334  Sum_probs=65.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---hh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---YA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  ++..+++|.++...   .. ...+.+|+.++..++|+|++++++.+...+..++++
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            4677788999999999999998  67889999886422   11 356889999999999999999999999889999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 e~~   84 (267)
T cd08224          82 ELA   84 (267)
T ss_pred             ecC
Confidence            985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.06  E-value=1.9e-09  Score=70.81  Aligned_cols=77  Identities=19%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||.|.||.||.+..  .+..+++|.+...... ...+..|+.++..++|+|++++++.+......++++||+
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence            4667788999999999999988  5678999988765433 467889999999999999999999999899999999984

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.06  E-value=1.2e-09  Score=72.84  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=62.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +|.....||+|+||.||+|..      .+..+++|.+......  ...+.+|+.++..++|+|++++++.+......+++
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   85 (283)
T cd05090           6 AVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCML   85 (283)
T ss_pred             hceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEE
Confidence            455678899999999999975      3357899988753322  35688999999999999999999999888899999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        86 ~e~~   89 (283)
T cd05090          86 FEYL   89 (283)
T ss_pred             EEcC
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.06  E-value=8.6e-10  Score=73.71  Aligned_cols=79  Identities=14%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      ..+.|...+.||+|+||.||+|..       .+..+++|.+......  ...+.+|+.++..++|+|++++++.+...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            455677789999999999999864       1347899987644322  2457889999999999999999999988889


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus        84 ~~lv~e~~   91 (288)
T cd05061          84 TLVVMELM   91 (288)
T ss_pred             cEEEEeCC
Confidence            99999985

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.06  E-value=1.1e-09  Score=72.29  Aligned_cols=77  Identities=25%  Similarity=0.304  Sum_probs=63.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+|...+.||+|+||.||.+..  .+   ..+++|.+......  ...+..|+.++..++|+|++++.+.+..++..+++
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            3566678999999999999976  22   26888888653322  35688999999999999999999999888899999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        84 ~e~~   87 (267)
T cd05066          84 TEYM   87 (267)
T ss_pred             EEcC
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.06  E-value=1.5e-09  Score=73.86  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=59.0

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHH---hccCCccccceeeEEEeCCeeEEEE
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFA---SQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l---~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ...+.||+|+||.||.+..  .+..+|+|.+.....    ....+..|+.++   ..++|+|++++++++...+..++|+
T Consensus         2 ~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~   81 (324)
T cd05589           2 RCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVM   81 (324)
T ss_pred             eEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEE
Confidence            4467899999999999988  678899999975421    124456666554   4667999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 E~~   84 (324)
T cd05589          82 EYA   84 (324)
T ss_pred             cCC
Confidence            985

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.06  E-value=1.9e-09  Score=73.51  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=59.4

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  .+..+|+|.+......    ...+..|..++..+ +|+||+++++++...+..++|+||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~   78 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFV   78 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCC
Confidence            3689999999999988  6788999999753221    24577888888888 6999999999999889999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.06  E-value=2.6e-09  Score=70.42  Aligned_cols=75  Identities=15%  Similarity=0.344  Sum_probs=63.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-------HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      |.....||.|.||.||++.. .+..+++|.+......       ...+.+|+.++..++|+|++++.+.+...+..++++
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            45678899999999999988 7788999988643211       245788999999999999999999999889999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 e~~   84 (265)
T cd06631          82 EFV   84 (265)
T ss_pred             ecC
Confidence            985

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.06  E-value=1.1e-09  Score=76.58  Aligned_cols=72  Identities=15%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..|...+.||+|+||.||.+..  .+..+|+|....     ..+.+|+.++..++|+||+++++.+......++++|++
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-----~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~  165 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR-----GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRY  165 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh-----hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecC
Confidence            5688889999999999999988  677899996432     34678999999999999999999998888899999874

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.05  E-value=4.5e-10  Score=74.77  Aligned_cols=76  Identities=25%  Similarity=0.364  Sum_probs=64.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|...+.||+|.||.||++..  .+..+++|.+......   ...+.+|+.++..++|+|++++++++..+...++++||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            466678899999999999998  5788999987643222   35578899999999999999999999988999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (286)
T cd07846          82 V   82 (286)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.05  E-value=1.7e-09  Score=73.78  Aligned_cols=76  Identities=16%  Similarity=0.082  Sum_probs=63.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|+.++..++|+|++.+.+.+...+..++|+|
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMD   81 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEe
Confidence            566778999999999999988  5678999998643211    2447788889999999999999999998999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 y~   83 (332)
T cd05623          82 YY   83 (332)
T ss_pred             cc
Confidence            85

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.05  E-value=9.6e-10  Score=72.55  Aligned_cols=76  Identities=13%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|+||.||.+..  .+..+++|.+...... ...+.+|+.++..++|+|++++++.+...+..++++||+
T Consensus        10 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645          10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            445567799999999999988  6788999998765433 345778999999999999999999999999999999984

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.05  E-value=5.4e-10  Score=73.72  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..|.....||+|+||.||++.. ....+++|.+.........+.+|+.++..++|+|++++++.+. ....++++||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcC
Confidence            4567788999999999999988 5557999998764444456889999999999999999998874 45678999985

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.05  E-value=1.4e-09  Score=72.92  Aligned_cols=77  Identities=21%  Similarity=0.338  Sum_probs=65.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|...+.||+|+||.||++..  ++..+++|.+...... ...+.+|+.++..++|+|++++.+.+..++..++|+||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            4667778899999999999987  6778999988643322 456888999999999999999999999889999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.05  E-value=1.5e-09  Score=72.16  Aligned_cols=76  Identities=5%  Similarity=0.025  Sum_probs=60.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHH-HhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVF-ASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~-l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|.....||+|+||.||++..  ++..+|+|.+......  ...+..|..+ ++.++|+|++++++.+..++..++++||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV   81 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence            566778899999999999998  6889999998754322  2345556554 5567899999999999988899999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (283)
T cd06617          82 M   82 (283)
T ss_pred             h
Confidence            5

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.05  E-value=4.7e-10  Score=75.74  Aligned_cols=78  Identities=17%  Similarity=0.193  Sum_probs=67.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+.|...++||+|+||.|+....  .+..+|+|.++...-.    ......|..+|..++||.||.++-.+...+.+|||
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            45688899999999999999988  7788999998764322    35578899999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       104 ld~~  107 (357)
T KOG0598|consen  104 LDYL  107 (357)
T ss_pred             Eecc
Confidence            9986

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.05  E-value=1.7e-09  Score=71.29  Aligned_cols=76  Identities=16%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch-------hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY-------AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      +|.....||+|++|.||.+..  ++..+++|.+.....       ....+..|+.++..++|+|++++++.+..++..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            356678899999999999987  778899998864321       12568899999999999999999999998899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        81 v~e~~   85 (268)
T cd06630          81 FVEWM   85 (268)
T ss_pred             EEecc
Confidence            99985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.05  E-value=1.4e-09  Score=72.51  Aligned_cols=69  Identities=10%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+|+||.||.+..  ++..+|+|.+......    ...+..|+.++..++|+|++.+.+.+......++|+||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIM   75 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCC
Confidence            68999999999987  6788999998754322    145678999999999999999999998888999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.05  E-value=2.7e-09  Score=70.16  Aligned_cols=76  Identities=20%  Similarity=0.277  Sum_probs=65.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||.|+||.||++..  ++..+++|.+.....  ....+.+|+.++..++|+|++++.+.+..++..++++||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~   81 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYL   81 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEecc
Confidence            567788999999999999997  677899998865432  2466889999999999999999999999999999999975

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.05  E-value=1.2e-09  Score=73.61  Aligned_cols=76  Identities=24%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .|...+.||+|.||.||.+..  .+..+++|.+......    ...+.+|+.++..++|+|++++.+++...+..++|+|
T Consensus        16 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e   95 (307)
T cd06607          16 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVME   95 (307)
T ss_pred             hhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHH
Confidence            466678899999999999988  6788999988643221    2568899999999999999999999999899999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        96 ~~   97 (307)
T cd06607          96 YC   97 (307)
T ss_pred             hh
Confidence            84

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.05  E-value=1.9e-09  Score=70.70  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhH---HHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAA---EFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~---~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...+.||+|+||.||++..  ++..+++|.+.......   .....|+.++..++|+||+++.+.+......++++||+
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            3467899999999999999  67789999998776543   23456899999999999999999999999999999974

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.05  E-value=2.1e-09  Score=71.28  Aligned_cols=76  Identities=20%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|.....||.|++|.||++..  ++..+++|.+......  ...+.+|+.+++.++|+|++++.+.+..+...++++||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            455667899999999999998  6788999988754322  356789999999999999999999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.05  E-value=3.2e-09  Score=69.53  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=63.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch------hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY------AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      |...+.||+|++|.||++..  ++..+++|.+.....      ....+..|+.++..++|+|++++.+.+..+...++++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            45568899999999999988  678899998865331      1356889999999999999999999998888999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 e~~   84 (258)
T cd06632          82 ELV   84 (258)
T ss_pred             Eec
Confidence            985

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.05  E-value=1.8e-09  Score=77.17  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--C-CeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--H-DYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~-~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.....||.|+||.||.+..  . +..+++|.+...... ...+..|+.++..++|+||+++++.+...+..+||+||+
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            66678899999999999987  3 567888876544333 345778999999999999999999999999999999985

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.05  E-value=1.7e-09  Score=73.66  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=60.5

Q ss_pred             CCeeeeC--CCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTG--LGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g--~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...||+|  +|+.||.+..  ++..+|+|.+......   ...+..|+.+++.++|+||+++++.+..++..++|+||+
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            4678998  6789999988  7788999998754321   355778999999999999999999999999999999985

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.04  E-value=4.8e-10  Score=74.47  Aligned_cols=73  Identities=22%  Similarity=0.225  Sum_probs=62.0

Q ss_pred             cCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           59 RQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..+.||+|.||.||++..  .+..+++|.+......  ...+..|+.++..++|+|++++++.+..+...++|+||+
T Consensus         8 ~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           8 KLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            346789999999999987  6778999988744322  356889999999999999999999999889999999985

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.04  E-value=1.8e-09  Score=71.91  Aligned_cols=74  Identities=12%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .....||+|.||.||++..  .+..+++|.+...... ...+.+|+.++..++|+|++++++.+...+..++++||+
T Consensus         8 ~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~   84 (282)
T cd06643           8 EIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   84 (282)
T ss_pred             HHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEec
Confidence            3456799999999999998  5678889988754433 456888999999999999999999999999999999984

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.04  E-value=1.6e-09  Score=70.94  Aligned_cols=76  Identities=14%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|.||.||++..  ++..+++|.+..... ...+.+|+.++..++|+|++++.+.+......++++||+
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~   80 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYC   80 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecC
Confidence            4677788899999999999998  477899998875533 467889999999999999999999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.04  E-value=1.2e-09  Score=71.99  Aligned_cols=76  Identities=26%  Similarity=0.385  Sum_probs=64.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||.|.||.||++..  ++..+++|.+......    ...+.+|+.++..++|+|++++++.+..++..++++|
T Consensus         3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   82 (267)
T cd08229           3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLE   82 (267)
T ss_pred             hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEE
Confidence            566678899999999999997  7788999987643221    2568899999999999999999999998889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        83 ~~   84 (267)
T cd08229          83 LA   84 (267)
T ss_pred             ec
Confidence            74

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.04  E-value=2.7e-09  Score=69.93  Aligned_cols=75  Identities=20%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |+..+.||.|+||.++.+..  ++..+++|.+....   .....+.+|+.++++++|+|++++++++...+..++++||+
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~   81 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYA   81 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEec
Confidence            56678999999999988887  67889999876532   22356889999999999999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.04  E-value=3e-09  Score=72.39  Aligned_cols=71  Identities=14%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             CeeeeCCCeEEEEEEE-----CCeeEEEEEEecCch-----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           61 KVITTGLGYELFKGFL-----HDYPVSIMKFVNSDY-----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~-----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +.||+|+||.||.+..     .+..+|+|.+.....     ....+..|+.++..++|+||+++++.+..++..++|+||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999875     456799999875321     124567899999999999999999999988999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (323)
T cd05584          82 L   82 (323)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.04  E-value=1.3e-09  Score=75.55  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .....|...+.||.|..+.||.+..  .+..||||+++...-.  -..+.+|+..|+.++||||++++-++..+..+|+|
T Consensus        23 ~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvV  102 (516)
T KOG0582|consen   23 LNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVV  102 (516)
T ss_pred             CCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEe
Confidence            3456788889999999999999987  6789999999865433  36789999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      |-||
T Consensus       103 mpfM  106 (516)
T KOG0582|consen  103 MPFM  106 (516)
T ss_pred             ehhh
Confidence            9887

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.03  E-value=3.6e-09  Score=72.23  Aligned_cols=71  Identities=18%  Similarity=0.188  Sum_probs=58.4

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||++..  .+..+|+|.+.....    ....+..|+.++..+ +|+|++++++++...+..++|+||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~   78 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYV   78 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCC
Confidence            3689999999999988  677899999875321    124567788887766 7999999999999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.03  E-value=2.1e-09  Score=71.01  Aligned_cols=70  Identities=21%  Similarity=0.318  Sum_probs=57.1

Q ss_pred             eeeeCCCeEEEEEEE-C---CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-H---DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~---~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||.|.. .   ...+++|.+......  ...+.+|+.++..++|+||+++++.+......++++||+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~   77 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFC   77 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeC
Confidence            589999999999976 3   346788876543322  356788999999999999999999999888999999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.03  E-value=1.1e-09  Score=72.26  Aligned_cols=78  Identities=26%  Similarity=0.379  Sum_probs=64.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++|...+.||+|+||.||++..  .+   ..+++|.+......  ...+..|+.++..++|+|++++.+.+...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            34667788999999999999987  33   36889988654322  3568899999999999999999999998899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        84 v~e~~   88 (268)
T cd05063          84 ITEYM   88 (268)
T ss_pred             EEEcC
Confidence            99985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.03  E-value=1e-10  Score=80.57  Aligned_cols=76  Identities=21%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|.....||.|+||.||+|..  .+..||+|.+......  ...+.+|+.++.++.++||.+++|.+..+..++++|||+
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            455568899999999999998  6788999999865544  467889999999999999999999999999999999985

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.03  E-value=2.3e-09  Score=70.78  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCC------e
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETE------N  123 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~------~  123 (131)
                      ++++|.....||.|.+|.||.+..  .+..+++|.+.........+..|+.++..+ .|+|++++++.+....      .
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQ   83 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceE
Confidence            456788889999999999999998  567899998876654456788999999998 6999999999987544      4


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus        84 ~~lv~e~~   91 (275)
T cd06608          84 LWLVMELC   91 (275)
T ss_pred             EEEEEEcC
Confidence            89999985

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.03  E-value=2.3e-11  Score=80.94  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=64.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.....||+|+||.|+++..  .|..+|+|...... .-+++..|+.+|.++..+.+|+++|.+.....++|||||+
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s-DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT-DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc-hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            34467899999999999988  78899999876543 3478999999999999999999999998888999999995

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.03  E-value=2.5e-09  Score=71.87  Aligned_cols=76  Identities=20%  Similarity=0.358  Sum_probs=65.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|.....||.|.+|.||++..  .+..+++|.+...... ...+.+|+.++..++|+|++++++.+...+..++|+||+
T Consensus        20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            466678899999999999987  7788999988654333 456788999999999999999999999889999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.2e-10  Score=77.30  Aligned_cols=73  Identities=21%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCC-----eeEEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE-----NPVLVF  128 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-----~~~lv~  128 (131)
                      .|...+.+|.|+||.||.|..  ++..+|+|........   -.+|..+|+.+.|||||++.-++....     ...+|+
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~---knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVl  101 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY---KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVL  101 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc---CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHH
Confidence            345578899999999999998  6788999987654432   347889999999999999988775421     345788


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      |||
T Consensus       102 eym  104 (364)
T KOG0658|consen  102 EYM  104 (364)
T ss_pred             Hhc
Confidence            886

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.03  E-value=8.5e-10  Score=78.40  Aligned_cols=71  Identities=14%  Similarity=0.182  Sum_probs=62.8

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .++||+|.||+||.|..  +|..||||.++.....   ...+.+|+.||..++||.||.+--.|...+..++|||-
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEK  644 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEK  644 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehh
Confidence            57899999999999998  8999999999865432   35688999999999999999999899999999999984

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.02  E-value=1.3e-09  Score=71.42  Aligned_cols=75  Identities=17%  Similarity=0.254  Sum_probs=63.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||.|+||.||++..  .+..+++|.+.....   ....+.+|+.+++.++|+|++++++.+..++..++++||+
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   81 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYC   81 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecC
Confidence            55678899999999999998  677899999865422   2345778999999999999999999999889999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.02  E-value=1.3e-09  Score=72.40  Aligned_cols=77  Identities=19%  Similarity=0.377  Sum_probs=64.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      .+|...+.||+|+||.||++.. .      +..+++|.+......  ...+.+|+.++..++|+|++++++.+......+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            3455678899999999999976 2      257899998754433  367899999999999999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +++||+
T Consensus        85 lv~e~~   90 (280)
T cd05049          85 MVFEYM   90 (280)
T ss_pred             EEEecC
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.02  E-value=2.1e-09  Score=71.13  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-----------HHHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-----------AEFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-----------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      |...+.||.|+||.||+|..  ++..+++|.+......           ...+..|+.++..++|+|++++++.+...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45567899999999999987  6788999987532111           1357789999999999999999999998899


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus        83 ~~lv~e~~   90 (272)
T cd06629          83 LSIFLEYV   90 (272)
T ss_pred             eEEEEecC
Confidence            99999984

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.02  E-value=1.7e-09  Score=72.35  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=67.4

Q ss_pred             HHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeC---
Q 040342           48 NELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLET---  121 (131)
Q Consensus        48 ~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~---  121 (131)
                      ..+..+.++|.....||+|.||.||++..  .+..+++|.+.........+..|+.++.++ +|+|++++++.+...   
T Consensus        15 ~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~   94 (291)
T cd06639          15 ESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKL   94 (291)
T ss_pred             ccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEecccc
Confidence            44445677888899999999999999988  677899998876443345677888888888 799999999988653   


Q ss_pred             --CeeEEEEeeC
Q 040342          122 --ENPVLVFEYV  131 (131)
Q Consensus       122 --~~~~lv~E~~  131 (131)
                        ...++|+||+
T Consensus        95 ~~~~~~lv~ey~  106 (291)
T cd06639          95 VGGQLWLVLELC  106 (291)
T ss_pred             CCCeeEEEEEEC
Confidence              3579999985

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.02  E-value=3.5e-09  Score=71.38  Aligned_cols=76  Identities=13%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|.||.||++..  .+..+++|.+......    ...+..|+.++..++|+|++++++.+..++..++++|
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            566778999999999999988  6678999988754321    2457789999999999999999999988889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (305)
T cd05609          82 YV   83 (305)
T ss_pred             cC
Confidence            85

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.02  E-value=1.3e-09  Score=72.71  Aligned_cols=78  Identities=19%  Similarity=0.292  Sum_probs=64.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .++|.....||.|+||.||++..       .+..+++|.+......  ...+.+|+.++..++|+|++++.+.+..+...
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            45677788999999999999875       2467899988754322  35688999999999999999999999888899


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        84 ~lv~e~~   90 (288)
T cd05050          84 CLLFEYM   90 (288)
T ss_pred             EEEEecC
Confidence            9999984

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.02  E-value=2.7e-09  Score=69.96  Aligned_cols=75  Identities=20%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.||.+|.+..  ++..+++|.+....   .....+.+|+.+++.++|+|++++.+.+...+..++++||+
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYC   81 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecC
Confidence            55678899999999999987  67889999886432   12356889999999999999999999999899999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.02  E-value=1.1e-10  Score=80.52  Aligned_cols=76  Identities=17%  Similarity=0.248  Sum_probs=65.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .|...+.||+|.||.|-++..  .|..||+|.+....-.    .-.+.+|+.||..++||||++++.++...+.+.||||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME  133 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME  133 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence            455578899999999999887  7889999999865432    2347899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |.
T Consensus       134 Ya  135 (668)
T KOG0611|consen  134 YA  135 (668)
T ss_pred             ec
Confidence            84

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.02  E-value=1.3e-09  Score=72.57  Aligned_cols=76  Identities=25%  Similarity=0.305  Sum_probs=64.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +|...+.||+|.||.||++..  ++..+++|.+......   ...+.+|+.++..++|+|++++++.+..++..++++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            466678899999999999988  5778999988653222   35688999999999999999999999998999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (288)
T cd07833          82 V   82 (288)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.02  E-value=2.4e-09  Score=73.81  Aligned_cols=78  Identities=24%  Similarity=0.324  Sum_probs=63.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCC------
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETE------  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------  122 (131)
                      ...|...+.||+|+||.||.+..  .+..+|+|.+.....   ....+.+|+.++..++|+|++++++++....      
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            46788889999999999999987  678899999864321   2356788999999999999999999886432      


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++++||+
T Consensus       100 ~~~lv~e~~  108 (359)
T cd07876         100 DVYLVMELM  108 (359)
T ss_pred             eeEEEEeCC
Confidence            468999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.01  E-value=2.1e-09  Score=72.85  Aligned_cols=76  Identities=20%  Similarity=0.406  Sum_probs=60.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .+|...+.||+|+||.||+|.+  .+.    .+++|.+......  ...+..|+.++..++|+|+++++|.+... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            3577788999999999999987  333    3889988754322  46788999999999999999999998764 5678


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        86 v~e~~   90 (316)
T cd05108          86 ITQLM   90 (316)
T ss_pred             eeecC
Confidence            88874

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.01  E-value=4.5e-09  Score=69.09  Aligned_cols=75  Identities=13%  Similarity=0.221  Sum_probs=64.7

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.||.||.+..  .+..+++|.+.....   ....+..|+.++..++|+|++++++.+...+..++++||+
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYC   81 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecC
Confidence            55678899999999999987  678899999876543   2467889999999999999999999998888999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.01  E-value=2e-09  Score=72.04  Aligned_cols=77  Identities=16%  Similarity=0.242  Sum_probs=63.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC--CeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~lv  127 (131)
                      ++|...+.||.|.||.||++..  .+..+++|.+......   ...+.+|+.++..++|+|++++.+.+...  ...+++
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            3566678899999999999998  5778999998754322   23467899999999999999999998877  889999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        85 ~e~~   88 (293)
T cd07843          85 MEYV   88 (293)
T ss_pred             ehhc
Confidence            9985

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.01  E-value=1e-09  Score=72.11  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||.|+||.||.+..  .+..+++|.+.....    ....+.+|+.++..++|+|++++++.+..+...++++|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            356678899999999999988  578899999875321    23568899999999999999999999988889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        81 ~~   82 (258)
T cd05578          81 LL   82 (258)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.01  E-value=1.2e-09  Score=74.83  Aligned_cols=79  Identities=13%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe-C
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE-T  121 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~-~  121 (131)
                      ..++|...+.||+|+||.||++..       .+..+|+|.+......  ...+.+|+.++..+ +|+|++++++.+.. +
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   84 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC
Confidence            345677889999999999999974       3567999998754322  35688999999999 58999999998764 4


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus        85 ~~~~lv~ey~   94 (343)
T cd05103          85 GPLMVIVEFC   94 (343)
T ss_pred             CceEEEEecc
Confidence            5678999985

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.01  E-value=1.7e-09  Score=71.50  Aligned_cols=76  Identities=20%  Similarity=0.248  Sum_probs=63.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .+...+.||.|+||.||++..  .+   ..+++|.+......  ...+..|+.++..++|+|++++.+.+..++..++++
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence            355678899999999999987  33   35899988754222  467899999999999999999999998888999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        85 e~~   87 (269)
T cd05065          85 EFM   87 (269)
T ss_pred             ecC
Confidence            985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.01  E-value=3.3e-09  Score=70.53  Aligned_cols=75  Identities=21%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.+|.||++..  ++..+++|.+......   ...+.+|+.++..++|+|++++++.+..+...++|+||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   81 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM   81 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc
Confidence            55677899999999999998  6788999998754321   356889999999999999999999999889999999985

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.00  E-value=4.2e-09  Score=68.94  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=63.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.+|.||.+..  .+..+++|.+......   ...+..|+.+++.++|+|++++++.+..++..++|+||+
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYA   81 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecC
Confidence            56678899999999999988  6778999988754322   356889999999999999999999998888999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.00  E-value=4.5e-09  Score=70.21  Aligned_cols=76  Identities=11%  Similarity=0.168  Sum_probs=62.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEe--CCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~lv~E  129 (131)
                      +|...+.||.|.+|.||.+..  .+..+++|.+.....  ....+.+|+.++..++|+||+++++.+..  ....++++|
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            456678899999999999998  678899998875433  23568899999999999999999998864  346899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (287)
T cd06621          82 YC   83 (287)
T ss_pred             ec
Confidence            85

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.00  E-value=1.6e-10  Score=82.57  Aligned_cols=77  Identities=19%  Similarity=0.351  Sum_probs=63.6

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .+++.-+.+...+.||+|+-|.||.|.+.+..||||..+...      ..+|..|++|+|+||+.+.|+|....-.+|||
T Consensus       118 ~WeiPFe~IsELeWlGSGaQGAVF~Grl~netVAVKKV~elk------ETdIKHLRkLkH~NII~FkGVCtqsPcyCIiM  191 (904)
T KOG4721|consen  118 LWEIPFEEISELEWLGSGAQGAVFLGRLHNETVAVKKVRELK------ETDIKHLRKLKHPNIITFKGVCTQSPCYCIIM  191 (904)
T ss_pred             hccCCHHHhhhhhhhccCcccceeeeeccCceehhHHHhhhh------hhhHHHHHhccCcceeeEeeeecCCceeEEee
Confidence            344444555667899999999999999977899999766433      24677899999999999999999998899999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       192 EfC  194 (904)
T KOG4721|consen  192 EFC  194 (904)
T ss_pred             ecc
Confidence            995

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.00  E-value=1.6e-09  Score=82.43  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=65.9

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe--CCe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE--TEN  123 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~  123 (131)
                      +...+.|.....||+|+||.||.+..  .+..+++|.+......   ...+..|+.++..++|+||+++++.+..  ...
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            34456788889999999999999998  6678899988753222   3568899999999999999999998754  356


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .+|||||+
T Consensus        89 lyIVMEY~   96 (1021)
T PTZ00266         89 LYILMEFC   96 (1021)
T ss_pred             EEEEEeCC
Confidence            89999985

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.00  E-value=3.3e-09  Score=70.55  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=67.4

Q ss_pred             HHHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEe---
Q 040342           47 ENELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLE---  120 (131)
Q Consensus        47 ~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~---  120 (131)
                      ..++..+.+.|.....||.|+||.||.+..  .+..+++|.+.........+..|+.++..+ +|+|++++++.+..   
T Consensus         8 ~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~   87 (282)
T cd06636           8 LSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSP   87 (282)
T ss_pred             hhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccc
Confidence            344445567788888999999999999998  677899998876544445677888888888 69999999998853   


Q ss_pred             ---CCeeEEEEeeC
Q 040342          121 ---TENPVLVFEYV  131 (131)
Q Consensus       121 ---~~~~~lv~E~~  131 (131)
                         ....++++||+
T Consensus        88 ~~~~~~~~iv~e~~  101 (282)
T cd06636          88 PGHDDQLWLVMEFC  101 (282)
T ss_pred             cCCCCEEEEEEEeC
Confidence               45789999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.00  E-value=1.2e-09  Score=73.24  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=62.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-C---------------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-H---------------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIG  116 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~---------------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g  116 (131)
                      ..|...+.||+|+||.||.+.. .               ...+++|.+......  ...+.+|+.++..++|+|++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            4567778899999999998765 1               124889988754222  356889999999999999999999


Q ss_pred             EEEeCCeeEEEEeeC
Q 040342          117 CCLETENPVLVFEYV  131 (131)
Q Consensus       117 ~~~~~~~~~lv~E~~  131 (131)
                      .+...+..++|+||+
T Consensus        85 ~~~~~~~~~lv~e~~   99 (295)
T cd05097          85 VCVSDDPLCMITEYM   99 (295)
T ss_pred             EEcCCCccEEEEecC
Confidence            999889999999985

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.00  E-value=2.6e-09  Score=72.02  Aligned_cols=77  Identities=19%  Similarity=0.278  Sum_probs=61.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe--eEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY--PVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~--~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|...+.||+|+||.||++..  ++.  .+++|.+......  ...+.+|+.++..+ +|+|++++++.+...+..+++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            3566678899999999999987  443  3577776543222  35688899999999 799999999999988999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        87 ~e~~   90 (303)
T cd05088          87 IEYA   90 (303)
T ss_pred             EEeC
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.00  E-value=1.6e-09  Score=73.14  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=62.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCC--eeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETE--NPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~--~~~lv~E  129 (131)
                      .++...+.||+|+||.||.+..  +|...|+|........ .+.+.+|+.+|.+++|+|||+++|.....+  ..+|++|
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            3455678899999999999998  5788999988765322 356889999999999999999999754444  5889999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        97 y~   98 (313)
T KOG0198|consen   97 YA   98 (313)
T ss_pred             cc
Confidence            85

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.00  E-value=3.5e-09  Score=70.80  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      |...+.||+|+||.||++.. .      ...+++|.+......  ...+..|+.++..++|+||+++++.+...+..+++
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLI   81 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEE
Confidence            55678899999999999986 1      145788887654332  35688999999999999999999999988899999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        82 ~e~~   85 (290)
T cd05045          82 VEYA   85 (290)
T ss_pred             EEec
Confidence            9984

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.00  E-value=1.7e-09  Score=71.26  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=62.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|.....||+|++|.||.+.. .+..+++|.+.........+.+|+.++..+.|+|++++++.+. .+..++++||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            3466678899999999999988 5557899987755444466889999999999999999998875 45688999985

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.00  E-value=5.8e-09  Score=68.78  Aligned_cols=75  Identities=15%  Similarity=0.320  Sum_probs=62.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----------HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----------AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      |.....||.|++|.||.+..  .+..+++|.+......          ...+.+|+.++..++|+|++++.+.+...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45567899999999999987  6678999988643221          14578899999999999999999999998999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~lv~e~~   88 (267)
T cd06628          82 NIFLEYV   88 (267)
T ss_pred             EEEEEec
Confidence            9999984

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.00  E-value=6.6e-09  Score=68.26  Aligned_cols=76  Identities=14%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||+|++|.+|++..  .+..+++|.+.....  ....+..|+..+..++|+|++++++.+..+...++++||+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            566778999999999999998  588899999876543  2467889999999999999999999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.00  E-value=3.9e-09  Score=71.59  Aligned_cols=75  Identities=23%  Similarity=0.288  Sum_probs=63.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |...+.||+|+||.||++..  ++..+++|.+......    ...+..|+.++..++|+|++++++++..+...++++||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            55567899999999999987  6778999988643211    24678899999999999999999999998999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       107 ~  107 (317)
T cd06635         107 C  107 (317)
T ss_pred             C
Confidence            5

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.99  E-value=5e-09  Score=69.89  Aligned_cols=79  Identities=22%  Similarity=0.298  Sum_probs=67.4

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .+.+|...+.+|+|.+|.||.+..  .+..+++|.+.........+..|+.++..++|+|++++++.+...+..++++||
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   96 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEY   96 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEec
Confidence            345566678899999999999998  578899999876544345688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        97 ~   97 (286)
T cd06614          97 M   97 (286)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.99  E-value=3.7e-09  Score=70.40  Aligned_cols=69  Identities=10%  Similarity=0.026  Sum_probs=57.6

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+|+||.||++..  .+..+++|.+......    ......|+.++..++|+|++++.+.+..+...++++||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLM   75 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecC
Confidence            68999999999987  6888999998643211    234567899999999999999999998889999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.99  E-value=3.1e-09  Score=70.68  Aligned_cols=76  Identities=20%  Similarity=0.347  Sum_probs=62.8

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CC-----eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HD-----YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~-----~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      +|...+.||+|+||.||.+..  .+     ..+++|.+......  ...+.+|+.++..++|+|++++++.+......++
T Consensus         6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   85 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCM   85 (283)
T ss_pred             HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEE
Confidence            456678899999999999987  22     46889988754332  3568899999999999999999999988888999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        86 ~~e~~   90 (283)
T cd05048          86 LFEYL   90 (283)
T ss_pred             EEecC
Confidence            99985

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=98.99  E-value=5.7e-09  Score=70.86  Aligned_cols=71  Identities=20%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhc-cCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQ-MNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~-l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||++..  .+..+|+|.+.....    .......|..++.. ++|+||+++++.+...+..++|+||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~   78 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYL   78 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCC
Confidence            3689999999999998  567899999875421    12345667777765 48999999999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.99  E-value=2e-09  Score=71.36  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CC-----eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HD-----YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~-----~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .++|.....||+|+||.||++..  ..     ..+++|.+......  ...+.+|+.++..++|+|++++++.+..+...
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            34566778899999999999987  22     57999998754322  35688999999999999999999999988999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        85 ~~v~e~~   91 (277)
T cd05032          85 LVVMELM   91 (277)
T ss_pred             EEEEecC
Confidence            9999984

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.99  E-value=4.7e-09  Score=69.75  Aligned_cols=74  Identities=19%  Similarity=0.243  Sum_probs=62.7

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc--h-hHHHHHHHHHHHhccCCccccceeeEEEeC--CeeEEEEee
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD--Y-AAEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPVLVFEY  130 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~--~-~~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~lv~E~  130 (131)
                      ...+.||+|++|.||++..  .+..+++|.+....  . ....+..|+.++..+.|+|++++.+.+...  +..++|+||
T Consensus         2 ~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~   81 (287)
T cd07840           2 EKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEY   81 (287)
T ss_pred             eeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecc
Confidence            4467899999999999998  57889999998653  1 135678899999999999999999999877  789999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (287)
T cd07840          82 M   82 (287)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.99  E-value=3.2e-09  Score=70.95  Aligned_cols=77  Identities=16%  Similarity=0.334  Sum_probs=63.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .+|...+.||+|+||.||.+..       .+..+++|.+...... ...+..|+.++..++|+|++++.+.+...+..++
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            4566778899999999999874       2345888888754433 4568899999999999999999999998899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        85 v~e~~   89 (288)
T cd05093          85 VFEYM   89 (288)
T ss_pred             EEEcC
Confidence            99985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.98  E-value=4.5e-09  Score=70.01  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEe--CCeeEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVL  126 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~l  126 (131)
                      .|...+.||+|+||.||.+..      .+..+++|.+...... ...+.+|+.++..++|+|++++.+++..  ....++
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   84 (284)
T cd05081           5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRL   84 (284)
T ss_pred             cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEE
Confidence            456678899999999999874      4668999998765443 4678899999999999999999998754  346789


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        85 v~e~~   89 (284)
T cd05081          85 VMEYL   89 (284)
T ss_pred             EEEec
Confidence            99985

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.98  E-value=3.5e-09  Score=70.44  Aligned_cols=75  Identities=21%  Similarity=0.310  Sum_probs=63.3

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||.|.+|.||++..  ++..+++|.+......   ...+..|+.++..++|+|++++++.+..++..++++||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            34567899999999999988  7888999988754322   255788999999999999999999999899999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=98.98  E-value=4.1e-09  Score=71.04  Aligned_cols=80  Identities=18%  Similarity=0.286  Sum_probs=65.0

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeC
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLET  121 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~  121 (131)
                      ...++|...+.||+|+||.||.+..       .+..+|+|.+......  ...+..|+.++.++ +|+|++++++.+...
T Consensus        32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  111 (302)
T cd05055          32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIG  111 (302)
T ss_pred             ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence            3445677789999999999999874       2346899988754322  35688999999999 799999999999988


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..++++||+
T Consensus       112 ~~~~lv~e~~  121 (302)
T cd05055         112 GPILVITEYC  121 (302)
T ss_pred             CceEEEEEcC
Confidence            8999999985

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.98  E-value=3.8e-09  Score=74.87  Aligned_cols=75  Identities=19%  Similarity=0.282  Sum_probs=59.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeC--------Ce
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLET--------EN  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~--------~~  123 (131)
                      ...|...+.||+|+||.||++..  .+..+|+|.+....   ....+|+.++..++|+|++++.+++...        ..
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  141 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIF  141 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceE
Confidence            35688889999999999999988  67889999886432   2245799999999999999998876421        24


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      +++|+||+
T Consensus       142 l~lvmE~~  149 (440)
T PTZ00036        142 LNVVMEFI  149 (440)
T ss_pred             EEEEEecC
Confidence            67899985

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.98  E-value=3.1e-09  Score=69.92  Aligned_cols=76  Identities=8%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|...+.||.|.+|.||++..  .+..+++|.+......  ...+.+|+.++..++|+|++++++.+......++++||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            355567899999999999988  5788999988765322  356889999999999999999999999889999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.98  E-value=4.9e-09  Score=69.55  Aligned_cols=75  Identities=17%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccC---CccccceeeEEEeCCeeEEEEe
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMN---HKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~---h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      |...+.||+|+||.||++..  .+..+++|.+......  ...+.+|+.++..+.   |+|++++++.+..+...++++|
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e   82 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIME   82 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEe
Confidence            45567899999999999998  6788999988654222  356788998888886   9999999999998889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        83 ~~   84 (277)
T cd06917          83 YA   84 (277)
T ss_pred             cC
Confidence            85

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.98  E-value=2.3e-09  Score=73.09  Aligned_cols=80  Identities=18%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEe-CCeeE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLE-TENPV  125 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~~  125 (131)
                      ..+++|.....||.|+||.||++..  .+..+++|.+.....   ....+..|+.++..++|+|++++.+++.. ....+
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   86 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIY   86 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEE
Confidence            3567788889999999999999987  778899998754221   13567789999999999999999998865 55788


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +++||+
T Consensus        87 lv~e~~   92 (328)
T cd07856          87 FVTELL   92 (328)
T ss_pred             EEeehh
Confidence            999975

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.98  E-value=2.8e-09  Score=71.49  Aligned_cols=77  Identities=17%  Similarity=0.258  Sum_probs=62.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE------------------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccce
Q 040342           55 KNYDRQKVITTGLGYELFKGFL------------------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRL  114 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~------------------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l  114 (131)
                      ++|...+.||+|+||.||.+..                  ....+++|.+......  ...+..|+.++..++|+|++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            4577788999999999998743                  1235888888754322  3568899999999999999999


Q ss_pred             eeEEEeCCeeEEEEeeC
Q 040342          115 IGCCLETENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~~~~~lv~E~~  131 (131)
                      ++.+...+..++++||+
T Consensus        85 ~~~~~~~~~~~lv~e~~  101 (296)
T cd05095          85 LAVCITSDPLCMITEYM  101 (296)
T ss_pred             EEEEecCCccEEEEEeC
Confidence            99999888999999985

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=98.97  E-value=2.6e-09  Score=70.99  Aligned_cols=78  Identities=19%  Similarity=0.337  Sum_probs=64.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .++|...+.||+|++|.||++.. .      +..+++|.+......  ...+..|+.++..++|+|++++++.+...+..
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPR   84 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCc
Confidence            45677788999999999999988 3      346788877644322  35688999999999999999999999888889


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        85 ~lv~e~~   91 (277)
T cd05036          85 FILLELM   91 (277)
T ss_pred             EEEEecC
Confidence            9999985

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.97  E-value=6.5e-09  Score=70.64  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             eeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||.+..  .+..+|+|.+.....    ....+..|..++..+ +|+||+.+++++...+..++|+||+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~   78 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYV   78 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCC
Confidence            589999999999988  567899999875321    124466788888765 6999999999999989999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.97  E-value=4.2e-09  Score=78.13  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|.....||+|.||.||.+..  .+..+|+|.+......    ...+..|+.++..++|+||+++++.+......+||+
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            4567788999999999999998  6789999998754321    255788889999999999999999998889999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        84 Ey~   86 (669)
T cd05610          84 EYL   86 (669)
T ss_pred             eCC
Confidence            985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=98.97  E-value=6.8e-09  Score=70.52  Aligned_cols=71  Identities=14%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHH-HHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIV-FASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~-~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||++..  ++..+|+|.+......    ...+..|.. ++..++|+||+++++.+...+..++|+||+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   78 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYV   78 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCC
Confidence            3689999999999998  6788999998754321    233445544 577889999999999998889999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.97  E-value=7.7e-10  Score=78.26  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=66.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|..-..||+|+-|.||.+.-  .+..||+|.+...... ..-+.+|+.+|+..+|+|||.++..+...+.+|+|||||
T Consensus       274 ~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  274 KYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             hhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeec
Confidence            455567899999999999987  6778999999876544 355789999999999999999999999889999999997

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=98.97  E-value=6.4e-09  Score=70.61  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=58.1

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  .+..+|+|.+.....    ....+..|..++..+ +|+|++++++++...+..++|+||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   78 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYV   78 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCC
Confidence            3589999999999988  577899999875421    124466788888777 6999999999999889999999985

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.96  E-value=3.8e-09  Score=70.22  Aligned_cols=78  Identities=15%  Similarity=0.377  Sum_probs=62.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-C-----CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe-CCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-H-----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE-TENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~-----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~  124 (131)
                      .++|...+.||+|+||.||.|.. .     +..+++|.+......  ...+.+|+.++..++|+|++++++.+.. +...
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            45677788999999999999998 4     567889988754322  3568899999999999999999998765 4677


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        85 ~~~~~~~   91 (280)
T cd05043          85 FVLYPYM   91 (280)
T ss_pred             EEEEEcC
Confidence            8888874

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.96  E-value=5.9e-09  Score=69.00  Aligned_cols=70  Identities=20%  Similarity=0.262  Sum_probs=56.4

Q ss_pred             eeeeCCCeEEEEEEE-CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||++.. .+   ..+++|.+......  ...+.+|+.++..++|+|++++++.+......++++||+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~   77 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYC   77 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecC
Confidence            589999999999976 32   24566766544322  356889999999999999999999999888999999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=98.96  E-value=8.4e-09  Score=70.16  Aligned_cols=71  Identities=13%  Similarity=0.105  Sum_probs=56.7

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHH-HHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIV-FASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~-~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||++..  ++..+|+|.+......    ...+..|.. ++..++|+||+++++.+...+..++|+||+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~   78 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYV   78 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCC
Confidence            3689999999999998  6788999998753221    233445544 567789999999999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.96  E-value=6.1e-09  Score=70.28  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=63.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC--CeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~l  126 (131)
                      .++|...+.||+|.||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+|++++++.+...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            45677788999999999999998  6888999998754322   23466899999999999999999988654  46899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        86 v~e~~   90 (309)
T cd07845          86 VMEYC   90 (309)
T ss_pred             EEecC
Confidence            99984

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.96  E-value=4.5e-09  Score=69.46  Aligned_cols=70  Identities=21%  Similarity=0.397  Sum_probs=57.0

Q ss_pred             eeeeCCCeEEEEEEE-C-------------CeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           62 VITTGLGYELFKGFL-H-------------DYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~-------------~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .||+|+||.||+|.. .             ...+++|.+...... ...+..++.++..++|+|++++++++......++
T Consensus         2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~l   81 (262)
T cd05077           2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIM   81 (262)
T ss_pred             ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEE
Confidence            589999999999985 1             124788887654433 3567888899999999999999999988888999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        82 v~e~~   86 (262)
T cd05077          82 VEEFV   86 (262)
T ss_pred             EEecc
Confidence            99985

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=98.95  E-value=2.6e-09  Score=70.84  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=65.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|.....||.|+||.|.....  +|..+|+|.++....-    .....+|..+|..+.||.++.+.+.+.....++|||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            3455578999999999999888  7788999999865432    355778999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       124 eyv  126 (355)
T KOG0616|consen  124 EYV  126 (355)
T ss_pred             ecc
Confidence            985

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.95  E-value=5.6e-09  Score=69.85  Aligned_cols=76  Identities=20%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccC-CccccceeeEEEeCCe-----e
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMN-HKNVIRLIGCCLETEN-----P  124 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~-----~  124 (131)
                      +|...+.||+|.||.||++..  ++..+++|.+......   ...+.+|+.++..++ |+|++++++++...+.     .
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            567778999999999999998  6788999987653322   246788999999995 6999999998876555     7


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~lv~e~~   88 (295)
T cd07837          82 YLVFEYL   88 (295)
T ss_pred             EEEeecc
Confidence            9999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.95  E-value=7e-09  Score=70.51  Aligned_cols=70  Identities=17%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             eeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||++..  .+..+|+|.+.....    ....+..|..++..+ +|+|++++++++...+..++|+||+
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~   78 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFV   78 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCC
Confidence            689999999999988  677899999875321    124566777777765 6999999999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.95  E-value=3.7e-09  Score=72.94  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=62.0

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ...+|.....||+|+||.||++..  .+..+++|......     ...|+.++..++|+||+++++.+......++|+||
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~-----~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  138 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGT-----TLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPH  138 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccc-----cHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEc
Confidence            345788899999999999999998  56688898744322     35688899999999999999999998999999987


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       139 ~  139 (357)
T PHA03209        139 Y  139 (357)
T ss_pred             c
Confidence            4

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.95  E-value=6.7e-09  Score=69.83  Aligned_cols=77  Identities=25%  Similarity=0.348  Sum_probs=61.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC-------
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE-------  122 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-------  122 (131)
                      ++|.....||+|+||.||++..  ++..+++|.+......   ...+.+|+.++..++|+|++++++.+...+       
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            4677788999999999999998  6788999988643222   234568999999999999999999886544       


Q ss_pred             -eeEEEEeeC
Q 040342          123 -NPVLVFEYV  131 (131)
Q Consensus       123 -~~~lv~E~~  131 (131)
                       ..++++||+
T Consensus        92 ~~~~lv~e~~  101 (310)
T cd07865          92 GSFYLVFEFC  101 (310)
T ss_pred             ceEEEEEcCC
Confidence             348999984

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.95  E-value=6.8e-09  Score=70.02  Aligned_cols=75  Identities=23%  Similarity=0.390  Sum_probs=62.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-C---CeeEEEEEEecCc---hh-HHHHHHHHHHHhccCCccccceeeEEEeC--CeeEE
Q 040342           57 YDRQKVITTGLGYELFKGFL-H---DYPVSIMKFVNSD---YA-AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPVL  126 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-~---~~~vavk~~~~~~---~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~l  126 (131)
                      |.....||+|+||.||++.. .   +..+|+|.+....   .. ...+.+|+.++..++|+|++++++.+...  ...++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            45567899999999999998 3   5789999987633   11 35578899999999999999999999877  78999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        82 v~e~~   86 (316)
T cd07842          82 LFDYA   86 (316)
T ss_pred             EEeCC
Confidence            99985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.95  E-value=7.1e-09  Score=68.48  Aligned_cols=74  Identities=22%  Similarity=0.422  Sum_probs=58.7

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCe------
Q 040342           58 DRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETEN------  123 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~------  123 (131)
                      ...+.||+|+||.||.+..  ++   ..+|+|.+......   ...+..|+..+..++|+|++++++.+...+.      
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   81 (273)
T cd05035           2 KLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPK   81 (273)
T ss_pred             ccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcc
Confidence            4567899999999999987  22   56999998754322   2568899999999999999999998865443      


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus        82 ~~~v~e~~   89 (273)
T cd05035          82 PMVILPFM   89 (273)
T ss_pred             cEEEEecc
Confidence            78888874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=98.95  E-value=5.4e-09  Score=69.25  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=63.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      ++|.....||.|+||.||.+..       ....+++|.+......  ...+.+|+.++..++|+|++++++.+...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            4567778899999999999986       1346888887654433  367899999999999999999999998888899


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +++||+
T Consensus        85 lv~e~~   90 (275)
T cd05046          85 MILEYT   90 (275)
T ss_pred             EEEEec
Confidence            999984

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.95  E-value=1.1e-08  Score=69.31  Aligned_cols=75  Identities=23%  Similarity=0.282  Sum_probs=62.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |.....||+|+||.||++..  .+..+++|.+......    ...+..|+.++..++|+|++++.+++......++++||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            34456799999999999987  6788999988643221    24578899999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       103 ~  103 (313)
T cd06633         103 C  103 (313)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=98.95  E-value=9.9e-09  Score=69.86  Aligned_cols=71  Identities=14%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHH-HHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIV-FASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~-~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  ++..+|+|.+.....    ....+..|.. ++..++|+||+++++.+..++..++|+||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~   78 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFV   78 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCC
Confidence            3589999999999988  678899999875321    1234455544 467789999999999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.94  E-value=9.2e-09  Score=68.31  Aligned_cols=76  Identities=16%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--C----CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe--CCeeE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--H----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPV  125 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~  125 (131)
                      .|...+.||+|+||.||++.+  .    +..+++|.+......  ...+..|+.++..++|+|++++.+++..  ....+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            345567899999999999986  2    568999998765543  4678999999999999999999998876  55789


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +++||+
T Consensus        85 lv~e~~   90 (284)
T cd05038          85 LIMEYL   90 (284)
T ss_pred             EEEecC
Confidence            999974

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.94  E-value=3.5e-09  Score=71.20  Aligned_cols=72  Identities=18%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...||+|+||.||++..  .+..+++|.+...... ...+.+|+.++..++|+|++++++.+..++..++++||+
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecC
Confidence            35689999999999987  6788999998654333 356788999999999999999999999899999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=98.94  E-value=1.1e-08  Score=69.76  Aligned_cols=71  Identities=20%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  ++..+|+|.+......    ...+..|+.++..+ +|+|++.+++++...+..++|+||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYV   78 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCC
Confidence            3689999999999988  6778999999754322    24577888888887 5999999999998889999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=98.94  E-value=6.2e-09  Score=71.90  Aligned_cols=78  Identities=23%  Similarity=0.317  Sum_probs=63.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeC------C
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLET------E  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~  122 (131)
                      .+.|...+.||+|+||.||.+..  .+..+|+|.+.....   ....+.+|+.++..++|+|++++++.+...      .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            46788889999999999999987  677899999875321   235678899999999999999999887542      3


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       103 ~~~lv~e~~  111 (364)
T cd07875         103 DVYIVMELM  111 (364)
T ss_pred             eEEEEEeCC
Confidence            579999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.94  E-value=3.5e-09  Score=71.07  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...||+|+||.||.+..  .+..+++|.+...... ...+.+|+.++..++|+|++++++.+..++..++++||+
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCC
Confidence            46699999999999987  6778999988654433 356889999999999999999999999899999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.94  E-value=4.3e-09  Score=70.40  Aligned_cols=81  Identities=17%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ....++|...+.||+|+||.||++.. .      ...+++|.+......  ...+.+|+.++..+ +|+|++++++.+..
T Consensus         8 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   87 (293)
T cd05053           8 ELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ   87 (293)
T ss_pred             ccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC
Confidence            34455677788999999999999986 2      256899988754322  35588899999999 79999999999988


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      .+..++++||+
T Consensus        88 ~~~~~li~e~~   98 (293)
T cd05053          88 EGPLYVVVEYA   98 (293)
T ss_pred             CCCeEEEEEeC
Confidence            88999999984

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>PHA03211 serine/threonine kinase US3; Provisional

Probab=98.94  E-value=6.3e-09  Score=74.16  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=60.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+|.....||+|+||.||++..  .+..|++|....     ..+.+|+.++..++|+||+++++++..++..++++|++
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~-----~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~  242 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY-----ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKY  242 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc-----cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEcc
Confidence            3577788899999999999998  567899985332     23568999999999999999999998888999999864

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.94  E-value=1.2e-08  Score=67.32  Aligned_cols=77  Identities=10%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch------hHHHHHHHHHHHhccCCccccceeeEEEeC--Cee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY------AAEFCFNNIVFASQMNHKNVIRLIGCCLET--ENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~  124 (131)
                      .+|...+.||+|.||.||.+..  .+..+++|.+.....      ....+.+|+.++..++|+|++++.+++...  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            3577788999999999999987  678899998753211      124678899999999999999999987653  467


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~~v~e~~   88 (265)
T cd06652          82 SIFMEHM   88 (265)
T ss_pred             EEEEEec
Confidence            7899984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=98.94  E-value=2.4e-09  Score=71.28  Aligned_cols=75  Identities=24%  Similarity=0.353  Sum_probs=63.1

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.||.||++..  .|..+++|.+......   ...+.+|+.++..++|+|++++++.+......++++||+
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence            45567899999999999998  6788999988653222   245778999999999999999999998888999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.94  E-value=4.9e-09  Score=71.61  Aligned_cols=78  Identities=15%  Similarity=0.174  Sum_probs=62.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeC-----Cee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET-----ENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~~  124 (131)
                      +++|...+.||+|+||.||.+..  ++..+++|.+......  ...+..|+.++..++|+|++++++.+...     ...
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            45778889999999999999987  7788999998643222  35578899999999999999999876543     357


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        84 ~lv~e~~   90 (336)
T cd07849          84 YIVQELM   90 (336)
T ss_pred             EEEehhc
Confidence            8999875

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.93  E-value=9.3e-09  Score=68.82  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=63.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-C-C----------------eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccce
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-H-D----------------YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRL  114 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~-~----------------~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l  114 (131)
                      ..|.....||+|+||.||.+.. . +                ..+++|.+......  ...+.+|+.++..++|+|++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            4567788999999999999876 1 1                34788988754322  3568899999999999999999


Q ss_pred             eeEEEeCCeeEEEEeeC
Q 040342          115 IGCCLETENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~~~~~lv~E~~  131 (131)
                      ++.+..++..++++||+
T Consensus        85 ~~~~~~~~~~~lv~e~~  101 (296)
T cd05051          85 LGVCTVDPPLCMIMEYM  101 (296)
T ss_pred             EEEEecCCCcEEEEecC
Confidence            99998888999999974

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.93  E-value=1.2e-08  Score=69.44  Aligned_cols=75  Identities=15%  Similarity=0.103  Sum_probs=60.1

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCC-ccccceeeEEEeCCeeEEEEe
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNH-KNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h-~niv~l~g~~~~~~~~~lv~E  129 (131)
                      |...+.||+|+||.||++..  .+..+|+|.+.....    ....+..|..++..+.| ++++.+.+++...+..++|+|
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (324)
T cd05587           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVME   81 (324)
T ss_pred             ceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEc
Confidence            56678899999999999988  567899999875321    12456788888888876 458888888888889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (324)
T cd05587          82 YV   83 (324)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.93  E-value=1.1e-08  Score=69.38  Aligned_cols=71  Identities=13%  Similarity=0.080  Sum_probs=57.2

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhc-cCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQ-MNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~-l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  .+..+|+|.+.....    .......|..++.. .+|+|++++++.+...+..++|+||+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   78 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFL   78 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCC
Confidence            3689999999999998  678899999875421    12345667777765 47999999999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=98.93  E-value=4.5e-10  Score=81.34  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=60.3

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeC------CeeEEE
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET------ENPVLV  127 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~~~~lv  127 (131)
                      ...+.||+|+||.||.|..  .|..||||.+.....-  ...+.+|+.+|+++.|+|||++.+.-...      ..+.++
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            3457799999999999996  8899999998864422  35688999999999999999998876543      357789


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        96 mEyC   99 (732)
T KOG4250|consen   96 MEYC   99 (732)
T ss_pred             Eeec
Confidence            9885

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.93  E-value=4.7e-09  Score=70.02  Aligned_cols=75  Identities=7%  Similarity=0.043  Sum_probs=61.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.....||+|+||.||.+..  .+..+++|.+......  ...+..|+.++.++. |+|++++++.+..+...++++||+
T Consensus         6 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~   85 (288)
T cd06616           6 LKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELM   85 (288)
T ss_pred             hHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecc
Confidence            33456799999999999988  6788999988754322  356788998898886 999999999998888889999884

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.93  E-value=1.2e-08  Score=68.57  Aligned_cols=71  Identities=20%  Similarity=0.255  Sum_probs=61.2

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..||+|+||.||++..  ++..+++|.+...... ...+.+|+.++..++|+|++++++.+..++..++++||+
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   99 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL   99 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecC
Confidence            5689999999999988  7788999988654333 355888999999999999999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.93  E-value=5.1e-09  Score=72.05  Aligned_cols=79  Identities=25%  Similarity=0.333  Sum_probs=63.4

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC------
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET------  121 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~------  121 (131)
                      ..+.|...+.||+|+||.||.+..  .+..+|+|.+......   ...+.+|+.++..++|+|++++++.+...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            346788889999999999999987  6778999988753222   35677899999999999999999987543      


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus        95 ~~~~lv~e~~  104 (355)
T cd07874          95 QDVYLVMELM  104 (355)
T ss_pred             ceeEEEhhhh
Confidence            2468999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.93  E-value=1.8e-08  Score=66.53  Aligned_cols=77  Identities=13%  Similarity=0.246  Sum_probs=61.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch------hHHHHHHHHHHHhccCCccccceeeEEEe--CCee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY------AAEFCFNNIVFASQMNHKNVIRLIGCCLE--TENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~  124 (131)
                      .+|...+.||+|+||.||++..  .+..+++|.+.....      ....+.+|+.++..++|+|++++.+.+..  ....
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            3677789999999999999987  678899998764321      12457889999999999999999998764  3567


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~l~~e~~   88 (266)
T cd06651          82 TIFMEYM   88 (266)
T ss_pred             EEEEeCC
Confidence            8899874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.93  E-value=1.1e-08  Score=66.98  Aligned_cols=74  Identities=24%  Similarity=0.421  Sum_probs=62.7

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CC----eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           58 DRQKVITTGLGYELFKGFL--HD----YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~----~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ...+.||.|+||.||.+..  .+    ..+++|.+......  ...+..|+.++..++|+|++++++.+...+..++++|
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            3467899999999999998  33    77999999765442  4678899999999999999999999988889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (258)
T smart00219       82 YM   83 (258)
T ss_pred             cc
Confidence            74

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.92  E-value=1.1e-08  Score=69.12  Aligned_cols=76  Identities=12%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +|...+.||+|.+|.||.+..  .+..+++|.+......    ...+..|+.++..++|+|++++++.+..+...++++|
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            466678899999999999988  5788999998754322    2568889999999999999999999998899999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (316)
T cd05574          82 YC   83 (316)
T ss_pred             ec
Confidence            74

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.92  E-value=2.1e-08  Score=65.39  Aligned_cols=75  Identities=17%  Similarity=0.219  Sum_probs=64.0

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeC--CeeEEEEe
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPVLVFE  129 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~lv~E  129 (131)
                      |...+.||+|++|.||++..  ++..+++|.+.....   ....+.+|+.++.+++|+|++++.+.+...  ...++++|
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   81 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLE   81 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEE
Confidence            45568899999999999998  578899999876542   246788999999999999999999999887  78999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (260)
T cd06606          82 YV   83 (260)
T ss_pred             ec
Confidence            74

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=98.92  E-value=1.2e-08  Score=69.26  Aligned_cols=71  Identities=17%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhc-cCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQ-MNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~-l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||++..  .+..+|+|.+.....    .......|..++.. .+|+||+++++.+...+..++|+||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~   78 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYL   78 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCC
Confidence            3689999999999998  667899999875321    12334556666654 47999999999998889999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.92  E-value=9.9e-09  Score=70.96  Aligned_cols=78  Identities=12%  Similarity=0.110  Sum_probs=59.1

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE---CCeeEEEEEEecC-----ch-hHHHHHHHHHHHhccCCccccceeeEEEeC
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL---HDYPVSIMKFVNS-----DY-AAEFCFNNIVFASQMNHKNVIRLIGCCLET  121 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~---~~~~vavk~~~~~-----~~-~~~~~~~e~~~l~~l~h~niv~l~g~~~~~  121 (131)
                      ....+.|.....||+|+||.||++..   .+..+|+|.+...     .. ....+.+|+.+|..++|+|+++.+..   .
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~   90 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---T   90 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---c
Confidence            34456788899999999999999977   4566799986532     11 13558899999999999998853322   2


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..+|||||+
T Consensus        91 ~~~~LVmE~~  100 (365)
T PRK09188         91 GKDGLVRGWT  100 (365)
T ss_pred             CCcEEEEEcc
Confidence            4579999985

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.92  E-value=7.6e-09  Score=67.82  Aligned_cols=69  Identities=25%  Similarity=0.476  Sum_probs=55.9

Q ss_pred             eeeeCCCeEEEEEEE--CC----------eeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           62 VITTGLGYELFKGFL--HD----------YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~----------~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .||+|+||.||++..  .+          ..+++|.+.........+.+|+.++..++|+|++++++.+.. ...++++|
T Consensus         2 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e   80 (259)
T cd05037           2 HLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVEE   80 (259)
T ss_pred             cccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEEE
Confidence            589999999999998  33          246777766544335678899999999999999999999877 77899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        81 ~~   82 (259)
T cd05037          81 YV   82 (259)
T ss_pred             cC
Confidence            85

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.92  E-value=1.7e-08  Score=67.47  Aligned_cols=76  Identities=22%  Similarity=0.266  Sum_probs=57.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE---CCeeEEEEEEecCchh---HHHHHHHHHHHhcc---CCccccceeeEEEe-----C
Q 040342           56 NYDRQKVITTGLGYELFKGFL---HDYPVSIMKFVNSDYA---AEFCFNNIVFASQM---NHKNVIRLIGCCLE-----T  121 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~---~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l---~h~niv~l~g~~~~-----~  121 (131)
                      .|.....||+|+||.||++..   .+..+|+|.+......   ...+.+|+.++..+   .|+||+++++++..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            466678899999999999986   3577999988653321   23456677776655   69999999998852     3


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus        82 ~~~~lv~e~~   91 (290)
T cd07862          82 TKLTLVFEHV   91 (290)
T ss_pred             CcEEEEEccC
Confidence            4688999974

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.91  E-value=1.1e-08  Score=66.87  Aligned_cols=70  Identities=23%  Similarity=0.372  Sum_probs=60.9

Q ss_pred             eeeeCCCeEEEEEEE-CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||.|+||.||.+.. .+..+++|.+......  ...+..|+.++..+.|+|++++++.+......++++||+
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   74 (251)
T cd05041           2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELV   74 (251)
T ss_pred             ccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcC
Confidence            589999999999998 6788999988754432  356889999999999999999999999888999999984

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=98.91  E-value=1.7e-08  Score=68.67  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=55.7

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHH-HHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNI-VFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~-~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||++..  .+..+|+|.+......    ...+..|. .++..++|+||+++++.+...+..++|+||+
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~   78 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYI   78 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCC
Confidence            3689999999999988  6678999998753221    12344444 3567789999999999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.91  E-value=8.4e-09  Score=68.70  Aligned_cols=77  Identities=16%  Similarity=0.273  Sum_probs=63.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++.....||+|+||.||.+..       .+..+++|.+...... ...+.+|+.++..++|+|++++++.+......++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            3456678899999999999863       3457888887755433 4678999999999999999999999988888999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        85 v~e~~   89 (280)
T cd05092          85 VFEYM   89 (280)
T ss_pred             EEecC
Confidence            99985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.91  E-value=1.2e-08  Score=68.47  Aligned_cols=77  Identities=6%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ++|...+.||+|.||.||++..  .+..+++|.+......  ...+..++.++.... |+|++++++.+..+...++++|
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            4566788999999999999999  4889999998754322  345666777666665 9999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        95 ~~   96 (296)
T cd06618          95 LM   96 (296)
T ss_pred             cc
Confidence            85

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.91  E-value=1.2e-08  Score=67.73  Aligned_cols=69  Identities=10%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+|+||.||.+..  ++..+++|.+......    ...+..|+.++..++|+|++++.+.+...+..++|+||+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLM   75 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecC
Confidence            68999999999987  6788999988753321    244678999999999999999999998888999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.91  E-value=1.4e-08  Score=69.03  Aligned_cols=76  Identities=14%  Similarity=0.106  Sum_probs=59.8

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +|.....||+|+||.||++..  .+..+|+|.+......    ...+..|..++..+ +|++++.+.+++...+..++|+
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            356678899999999999988  5678999998754221    23456677777666 4889999999998889999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        81 E~~   83 (323)
T cd05616          81 EYV   83 (323)
T ss_pred             cCC
Confidence            985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.91  E-value=7.9e-09  Score=70.52  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhH---------------HHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAA---------------EFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~---------------~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      .+.||.|+||.||++..  .+..+|+|.+.......               ..+.+|+.++..++|+|++++++.+...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            56799999999999987  67889999886432211               14678999999999999999999999889


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++++||+
T Consensus        94 ~~~lv~e~~  102 (335)
T PTZ00024         94 FINLVMDIM  102 (335)
T ss_pred             cEEEEEecc
Confidence            999999985

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.91  E-value=1.2e-08  Score=67.13  Aligned_cols=69  Identities=22%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             eeeeCCCeEEEEEEE----CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL----HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||.|.+    .+..+++|.+......  ...+.+|+.++..++|+|++++++.+. .+..++|+||+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~   76 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMA   76 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeC
Confidence            379999999999976    3446899988754332  356889999999999999999999875 45789999985

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.91  E-value=3.5e-09  Score=75.99  Aligned_cols=76  Identities=20%  Similarity=0.235  Sum_probs=65.3

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-C-----ccccceeeEEEeCCeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-H-----KNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h-----~niv~l~g~~~~~~~~~lv  127 (131)
                      .|.+.+.||+|.||+|.+|..  ++..||+|.++........-..|+.+|..++ |     -|+|++++++.-.++.+||
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciV  266 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIV  266 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeee
Confidence            567788999999999999998  7889999999987666566678899988886 3     3799999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +|.+
T Consensus       267 fELL  270 (586)
T KOG0667|consen  267 FELL  270 (586)
T ss_pred             ehhh
Confidence            9963

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=2.4e-09  Score=77.44  Aligned_cols=75  Identities=20%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |..++.||.|+.|.|..|..  +|...|||.+......    ...+.+|+.+|+-+.|+|++.+++++....++|+|.||
T Consensus        14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEy   93 (786)
T KOG0588|consen   14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEY   93 (786)
T ss_pred             eeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEe
Confidence            45578899999999999988  8999999999765211    35688999999999999999999999999999999999


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        94 v   94 (786)
T KOG0588|consen   94 V   94 (786)
T ss_pred             c
Confidence            6

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.90  E-value=1.2e-08  Score=67.80  Aligned_cols=76  Identities=21%  Similarity=0.405  Sum_probs=61.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..|...+.||+|+||.||++..  ++.    .+++|.+......  ...+.+|+.++..++|+|++++++.+.. +..++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            3456678899999999999987  332    5788887655432  3568899999999999999999999876 77899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        86 v~e~~   90 (279)
T cd05057          86 ITQLM   90 (279)
T ss_pred             EEecC
Confidence            99974

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.90  E-value=1.7e-08  Score=68.69  Aligned_cols=75  Identities=15%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEe
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      |.....||+|+||.||.+..  ++..+|+|.+......    ...+..|..++..+. |++++.+.+++...+..++|+|
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            45578899999999999988  6788999998753211    244667888887776 5778888888888889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 y~   83 (323)
T cd05615          82 YV   83 (323)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.90  E-value=2.9e-08  Score=64.78  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=64.3

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.+|.+|.+..  .+..+++|.+.....   ....+.+|+.++..++|+|++++.+.+......++++||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYA   81 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecC
Confidence            55678899999999999987  667899999876543   2366889999999999999999999998888999999974

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.90  E-value=1.2e-08  Score=70.00  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC-----
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE-----  122 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-----  122 (131)
                      ..+.|.....||+|+||.||.+..  .+..+|+|.+......   ...+..|+.++..++|+||+++.+++..+.     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            345687888999999999999987  7788999988643211   345788999999999999999999886543     


Q ss_pred             -eeEEEEeeC
Q 040342          123 -NPVLVFEYV  131 (131)
Q Consensus       123 -~~~lv~E~~  131 (131)
                       ..++|+||+
T Consensus        93 ~~~~lv~e~~  102 (343)
T cd07880          93 HDFYLVMPFM  102 (343)
T ss_pred             ceEEEEEecC
Confidence             347888874

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.90  E-value=2.3e-08  Score=66.85  Aligned_cols=75  Identities=19%  Similarity=0.229  Sum_probs=62.7

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.....||+|++|.||++..  .+..+++|.+...... ...+.+|+.++..++|+|++++++.+..++..++++||+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEecc
Confidence            33457899999999999987  6778999988654333 355788999999999999999999998889999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.89  E-value=5.9e-09  Score=69.39  Aligned_cols=75  Identities=17%  Similarity=0.274  Sum_probs=61.0

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      |.....||+|+||.||++.. .      +..+|+|.+......  ...+..|+.++..++|+||+++++.+...+..+++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~   86 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMI   86 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEE
Confidence            34457799999999999986 2      357999998754332  35688899999999999999999999888889999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        87 ~e~~   90 (283)
T cd05091          87 FSYC   90 (283)
T ss_pred             EEcC
Confidence            9874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.89  E-value=2e-09  Score=70.83  Aligned_cols=70  Identities=26%  Similarity=0.395  Sum_probs=56.6

Q ss_pred             eeeeCCCeEEEEEEE--CC-------eeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL--HD-------YPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~-------~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||.|+||.||++..  .+       ..+++|.+...... ...+..|+.++..++|+|++++++.+..++..++|+||+
T Consensus         2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   81 (258)
T cd05078           2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYV   81 (258)
T ss_pred             CCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecC
Confidence            589999999999976  22       23677776544333 356888999999999999999999999888999999985

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.89  E-value=1.6e-08  Score=68.33  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=56.8

Q ss_pred             CCeeeeCCCeEEEEEEE----CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe--CCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL----HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~lv~E~~  131 (131)
                      ...||+|+||.||++..    .+..+|+|.+..... ...+.+|+.++..++|+|++++.+++..  +...++++||+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeee
Confidence            35799999999999986    335789998865432 2457789999999999999999998853  45778999984

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.89  E-value=1.2e-08  Score=69.89  Aligned_cols=77  Identities=21%  Similarity=0.286  Sum_probs=61.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC------e
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE------N  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------~  123 (131)
                      ..|.....||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+|++++.+++....      .
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence            5677788999999999999987  6788999988643211   245788999999999999999999886432      3


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus        95 ~~lv~e~~  102 (342)
T cd07879          95 FYLVMPYM  102 (342)
T ss_pred             EEEEeccc
Confidence            58888874

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.89  E-value=1.6e-08  Score=68.48  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             CCeeeeCCCeEEEEEEE----CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe--CCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL----HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~lv~E~~  131 (131)
                      ...||+|+||.||++..    .+..+|+|.+..... .....+|+.++..++|+||+++++.+..  +...++++||+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA   82 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC-cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEecc
Confidence            46799999999999986    346789998865432 2456789999999999999999998754  45678999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.89  E-value=1.8e-08  Score=68.10  Aligned_cols=75  Identities=23%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |.....||+|+||.||.+..  ++..+++|.+.....    ....+..|+.++..++|+|++++.+++......++|+||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence            44456799999999999998  677899998864211    124577899999999999999999999988899999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        97 ~   97 (308)
T cd06634          97 C   97 (308)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.88  E-value=2.2e-08  Score=66.71  Aligned_cols=75  Identities=19%  Similarity=0.256  Sum_probs=59.1

Q ss_pred             CCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEe--CCeeEE
Q 040342           57 YDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVL  126 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~l  126 (131)
                      +.....||+|+||.||.+.+      .+..+++|.+.....  ....+.+|+.++..++|+|++++.+.+..  ....++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            35678899999999987653      456799999875432  23567899999999999999999998765  345789


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        86 v~e~~   90 (283)
T cd05080          86 IMEYV   90 (283)
T ss_pred             EecCC
Confidence            99974

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.88  E-value=1.6e-08  Score=67.20  Aligned_cols=74  Identities=20%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccC-CccccceeeEEEeC--CeeEEEEee
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIGCCLET--ENPVLVFEY  130 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g~~~~~--~~~~lv~E~  130 (131)
                      ...+.||+|.||.||++..  ++..+++|.+......  ......|+.++.++. |+|++++++.+..+  +..++|+||
T Consensus         2 ~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~   81 (282)
T cd07831           2 KILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFEL   81 (282)
T ss_pred             ceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEec
Confidence            3467799999999999988  6788999988753222  233457888888885 99999999999877  889999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (282)
T cd07831          82 M   82 (282)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=98.88  E-value=4.1e-09  Score=71.17  Aligned_cols=76  Identities=21%  Similarity=0.234  Sum_probs=62.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecC-c--hhHHHHHHHHHHHhccCCccccceeeEEEe-----CCeeE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNS-D--YAAEFCFNNIVFASQMNHKNVIRLIGCCLE-----TENPV  125 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~-~--~~~~~~~~e~~~l~~l~h~niv~l~g~~~~-----~~~~~  125 (131)
                      .|.....||.|+||.|.++..  +|..||+|.+... .  ...+...+|+.+|+.++|+||+.+......     ....|
T Consensus        23 ~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvY  102 (359)
T KOG0660|consen   23 YYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVY  102 (359)
T ss_pred             eecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeE
Confidence            444467899999999999988  7889999998732 2  224667899999999999999999988765     45789


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+|+|
T Consensus       103 iV~elM  108 (359)
T KOG0660|consen  103 LVFELM  108 (359)
T ss_pred             EehhHH
Confidence            999986

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.88  E-value=8.4e-09  Score=69.58  Aligned_cols=78  Identities=15%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-C--------CeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-H--------DYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLET  121 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~--------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~  121 (131)
                      .+.|...+.||+|+||.||.+.. .        ...+++|.+......  ...+..|+.++..+ +|+|++++++.+...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            35677789999999999999875 1        135899988754222  35678899999998 799999999999988


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..++++||+
T Consensus        97 ~~~~lv~e~~  106 (307)
T cd05098          97 GPLYVIVEYA  106 (307)
T ss_pred             CceEEEEecC
Confidence            8999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.87  E-value=8.5e-09  Score=70.40  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=62.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-C--------CeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeCC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-H--------DYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLETE  122 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~--------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~  122 (131)
                      ..|.....||+|+||.||.+.. .        ...+++|.+......  ...+.+|+.++.++ +|+||+++++.+...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            4567788999999999999975 1        135889987753322  35788999999999 7999999999999888


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++++||+
T Consensus        92 ~~~lv~e~~  100 (334)
T cd05100          92 PLYVLVEYA  100 (334)
T ss_pred             ceEEEEecC
Confidence            999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.87  E-value=6.2e-09  Score=68.92  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc----hhHHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD----YAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~----~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +|...+.||.|+||.||++..  ++..+++|.+....    .....+..|..++..++ |+|++++++.+..++..++++
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            566778899999999999998  77889999886532    11356788899999998 999999999998888999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 e~~   84 (280)
T cd05581          82 EYA   84 (280)
T ss_pred             cCC
Confidence            974

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.87  E-value=1.7e-08  Score=67.78  Aligned_cols=77  Identities=16%  Similarity=0.268  Sum_probs=61.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe--eEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY--PVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~--~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|...+.||+|+||.||++..  .+.  .+++|.+......  ...+..|+.++.++ +|+|++++++.+......+++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            3566788999999999999987  332  4678777643222  35688899999888 699999999999888889999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        82 ~e~~   85 (297)
T cd05089          82 IEYA   85 (297)
T ss_pred             EEec
Confidence            9984

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.87  E-value=1.6e-08  Score=67.44  Aligned_cols=76  Identities=14%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeC--CeeE
Q 040342           56 NYDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPV  125 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~  125 (131)
                      .|.....||+|+||.||.+.+      .+..+++|.+......  ...+.+|+.++..++|+|++++.+.+...  ...+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            345678899999999999874      4567999998754322  35688999999999999999999988764  5688


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +++||+
T Consensus        85 lv~e~~   90 (284)
T cd05079          85 LIMEFL   90 (284)
T ss_pred             EEEEcc
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.87  E-value=1.2e-08  Score=68.76  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=63.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLET  121 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~  121 (131)
                      ..+|.....||+|+||.||.+..         .+..+++|.+......  ...+..|+.++..+ +|+|++++++.+...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            45566788999999999998864         2346889988643222  35688999999999 799999999999988


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus        94 ~~~~lv~e~~  103 (304)
T cd05101          94 GPLYVIVEYA  103 (304)
T ss_pred             CceEEEEecC
Confidence            8999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.86  E-value=2.8e-08  Score=67.77  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh-----HHHHHHHHHHHhccC-CccccceeeEEEeCCee
Q 040342           56 NYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA-----AEFCFNNIVFASQMN-HKNVIRLIGCCLETENP  124 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~-----~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~  124 (131)
                      +|...+.||+|+||.||.+..     .+..+|+|.+......     ...+..|+.++..++ |+|++.+.+.+...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            356678899999999998865     4568999998753211     245778899999985 89999999999888899


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        81 ~lv~e~~   87 (332)
T cd05614          81 HLILDYV   87 (332)
T ss_pred             EEEEeCC
Confidence            9999985

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.86  E-value=3.2e-08  Score=64.60  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||.|+||.||.+..  ++..+++|.+.....   ....+..|+.++..++|+|++++.+.+...+..++++||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~   81 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYA   81 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEec
Confidence            55677899999999999998  578899999876433   2356889999999999999999999998889999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.86  E-value=2.2e-08  Score=65.89  Aligned_cols=69  Identities=12%  Similarity=0.118  Sum_probs=59.3

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||.|.+|.||.+..  .+..+++|.+......    ...+.+|+.++..++|+|++++++.+..+...++++||+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   75 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYC   75 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecC
Confidence            68999999999998  4788999998754321    356889999999999999999999998889999999985

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.86  E-value=2e-08  Score=65.97  Aligned_cols=69  Identities=20%  Similarity=0.316  Sum_probs=56.0

Q ss_pred             eeeeCCCeEEEEEEE----CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL----HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||+|.+    .+..+++|.+......   ...+..|+.++..+.|+|++++++.+. .+..++++||+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~   77 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELA   77 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecC
Confidence            589999999999965    4578999988644322   366889999999999999999999875 45678999974

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.86  E-value=2.4e-08  Score=65.96  Aligned_cols=76  Identities=12%  Similarity=0.193  Sum_probs=59.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-C--CeeEEEEEEecCch-----------hHHHHHHHHHHHhc-cCCccccceeeEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL-H--DYPVSIMKFVNSDY-----------AAEFCFNNIVFASQ-MNHKNVIRLIGCCLE  120 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~--~~~vavk~~~~~~~-----------~~~~~~~e~~~l~~-l~h~niv~l~g~~~~  120 (131)
                      +|...+.||+|+||.||.+.. .  +..+++|.+.....           ....+..|+.++.+ ++|+|++++++.+..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            356678899999999999998 3  56789998753211           12446678877764 789999999999999


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ++..++++||+
T Consensus        81 ~~~~~lv~e~~   91 (269)
T cd08528          81 NDRLYIVMDLI   91 (269)
T ss_pred             CCeEEEEEecC
Confidence            99999999984

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.86  E-value=2.5e-09  Score=75.95  Aligned_cols=76  Identities=16%  Similarity=0.160  Sum_probs=65.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +-|...+.||.|.|+.|-.+..  .|..||||.+......   ...+.+|+..|.-++|||||+++.+......+|||+|
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            4466678899999999988877  8999999999876544   3668899999999999999999999988889999998


Q ss_pred             e
Q 040342          130 Y  130 (131)
Q Consensus       130 ~  130 (131)
                      +
T Consensus        98 L   98 (864)
T KOG4717|consen   98 L   98 (864)
T ss_pred             e
Confidence            5

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.86  E-value=1.8e-08  Score=67.47  Aligned_cols=76  Identities=14%  Similarity=0.306  Sum_probs=62.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +|.....||+|+||.||.+..       .+..+++|.+...... ...+.+|+.++..++|+|++++++.+...+..++|
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   85 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMV   85 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEE
Confidence            455678899999999999975       2345788887655433 35688999999999999999999999988899999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        86 ~e~~   89 (291)
T cd05094          86 FEYM   89 (291)
T ss_pred             EecC
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.86  E-value=2.3e-11  Score=78.76  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ++|+.-+.||+|.|+.|+++..  .|..+++|.++.....   -+++.+|+.|.+.++||||+.+.....+....+||+|
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe   90 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD   90 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEe
Confidence            3455567899999999999887  6777788877654322   3678899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      +|
T Consensus        91 ~m   92 (355)
T KOG0033|consen   91 LV   92 (355)
T ss_pred             cc
Confidence            86

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.86  E-value=2.3e-08  Score=65.46  Aligned_cols=71  Identities=28%  Similarity=0.442  Sum_probs=61.2

Q ss_pred             CeeeeCCCeEEEEEEE--C---CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--H---DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~---~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||++..  .   +..+++|.+......  ...+..|+..+..++|+|++++++.+......++++||+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYM   78 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEec
Confidence            3589999999999998  3   678999998765443  367889999999999999999999998888999999985

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.86  E-value=1.1e-08  Score=69.34  Aligned_cols=78  Identities=15%  Similarity=0.246  Sum_probs=62.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLET  121 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~  121 (131)
                      .+.|...+.||+|+||.||.+..         ....+++|.+......  ...+..|+.++..+ +|+|++++++++...
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            34566788999999999999864         2346888987753322  35678899999988 599999999999888


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus        91 ~~~~lv~e~~  100 (314)
T cd05099          91 GPLYVIVEYA  100 (314)
T ss_pred             CceEEEEecC
Confidence            8899999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.85  E-value=4.5e-08  Score=63.58  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=64.7

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch-hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY-AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~-~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.+|.||++..  ++..+++|.+..... ....+.+|+..+..++|+|++++.+.+..+...++++||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecC
Confidence            45568899999999999998  577899999876554 3467889999999999999999999998888999999984

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.85  E-value=7.2e-09  Score=71.01  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=61.3

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe-C
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE-T  121 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~-~  121 (131)
                      +.+.|...+.||+|+||.||.+..       .+..+|+|.+......  ...+..|+.++..+ +|+|++++++.+.. +
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~   84 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG   84 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC
Confidence            344677789999999999999864       2357999988754322  35577899999999 79999999998864 4


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus        85 ~~~~~v~ey~   94 (337)
T cd05054          85 GPLMVIVEYC   94 (337)
T ss_pred             CCEEEEEecC
Confidence            5678889885

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.85  E-value=4.6e-08  Score=64.54  Aligned_cols=77  Identities=13%  Similarity=0.238  Sum_probs=61.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc------hhHHHHHHHHHHHhccCCccccceeeEEEeC--Cee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD------YAAEFCFNNIVFASQMNHKNVIRLIGCCLET--ENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~  124 (131)
                      .+|...+.||+|+||.||.+..  ++..+++|.+....      .....+.+|+.++..++|+|++++++++...  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            3567788999999999999987  67889999875321      1125678899999999999999999988653  457


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~~v~e~~   88 (264)
T cd06653          82 SIFVEYM   88 (264)
T ss_pred             EEEEEeC
Confidence            8899874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.85  E-value=2.8e-08  Score=65.19  Aligned_cols=75  Identities=13%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe--CCeeEEEEe
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVLVFE  129 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~lv~E  129 (131)
                      |...+.||.|+||.||++..  .+..+++|.+......   ...+..|+.++..++|+|++++++.+..  ....++++|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e   81 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVME   81 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEeh
Confidence            55678899999999999987  6778999988643222   3568889999999999999999987753  456789999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (265)
T cd08217          82 YC   83 (265)
T ss_pred             hc
Confidence            74

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.85  E-value=2.8e-08  Score=65.26  Aligned_cols=70  Identities=23%  Similarity=0.354  Sum_probs=57.1

Q ss_pred             CeeeeCCCeEEEEEEE--CC---eeEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HD---YPVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||+|.+  .+   ..+++|.+.....  ....+..|+.++..+.|+|++++++.+. .+..++++||+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~   77 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELA   77 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeC
Confidence            3589999999999987  22   5789999876554  2466889999999999999999999875 45678999974

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.84  E-value=2.9e-08  Score=65.65  Aligned_cols=74  Identities=27%  Similarity=0.437  Sum_probs=56.8

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCe--eEEEEEEecCc---hhHHHHHHHHHHHhccCCccccceeeEEEeC------Cee
Q 040342           58 DRQKVITTGLGYELFKGFL--HDY--PVSIMKFVNSD---YAAEFCFNNIVFASQMNHKNVIRLIGCCLET------ENP  124 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~--~vavk~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~~~  124 (131)
                      ...+.||+|+||.||++..  .+.  .+|+|.+....   .....+..|+.++..++|+|++++++.+...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            3467899999999999988  332  58888876532   1235688899999999999999999987432      246


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~~v~e~~   88 (272)
T cd05075          82 VVILPFM   88 (272)
T ss_pred             EEEEEeC
Confidence            7888885

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.84  E-value=8.1e-09  Score=68.16  Aligned_cols=70  Identities=20%  Similarity=0.383  Sum_probs=57.6

Q ss_pred             eeeeCCCeEEEEEEE-C-C------eeEEEEEEecCc--hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-H-D------YPVSIMKFVNSD--YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~-~------~~vavk~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||.+.. . .      ..+++|.+....  .....+.+|+.++..++|+||+++++.+...+..++++||+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELM   81 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEecc
Confidence            589999999999986 2 2      468888876443  22456889999999999999999999998888999999984

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.84  E-value=2.9e-08  Score=65.20  Aligned_cols=75  Identities=20%  Similarity=0.289  Sum_probs=61.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEE-eCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCL-ETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~-~~~~~~lv~E~~  131 (131)
                      +|...+.||+|+||.||.+...+..+++|.+.... ....+..|+.++..++|+|++++++.+. .++..++++||+
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082           7 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             hCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCCc-hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECC
Confidence            56667889999999999998877889999886433 2356889999999999999999999764 456789999985

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.84  E-value=1.2e-08  Score=69.60  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe----CCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE----TENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~----~~~~~  125 (131)
                      ++|.....||.|+||.||.+..  .+..+++|.+......   ...+..|+.++..++|+|++++++.+..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            5677788999999999999987  6889999998754221   3557789999999999999999887642    34688


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        85 lv~e~~   90 (334)
T cd07855          85 VVMDLM   90 (334)
T ss_pred             EEEehh
Confidence            999985

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.84  E-value=1.4e-08  Score=66.58  Aligned_cols=74  Identities=19%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|...+.||+|+||.||.+...+..+++|.+.... ....+.+|+.++..++|+|++++.+.+... ..++++||+
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~   80 (254)
T cd05083           7 KLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDV-TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELM   80 (254)
T ss_pred             HceeeeeeccCCCCceEecccCCCceEEEeecCcc-hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECC
Confidence            46667899999999999988777789999886543 235688999999999999999999988654 578999985

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.83  E-value=1.7e-08  Score=69.16  Aligned_cols=78  Identities=17%  Similarity=0.236  Sum_probs=60.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC------C
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET------E  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~  122 (131)
                      .+.|.....||.|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++++...      .
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFN   93 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccC
Confidence            35677788999999999999987  6778999998754322   24577899999999999999999877532      3


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++++|++
T Consensus        94 ~~~~~~~~~  102 (343)
T cd07878          94 EVYLVTNLM  102 (343)
T ss_pred             cEEEEeecC
Confidence            467777763

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.83  E-value=1.3e-08  Score=69.74  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeC----------
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLET----------  121 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~----------  121 (131)
                      +.|...+.||.|+||.||.+..  .+..+++|.+...... ...+.+|+.++..++|+|++++++.+...          
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            4677788999999999999988  6788999988654433 35688899999999999999998766432          


Q ss_pred             ----CeeEEEEeeC
Q 040342          122 ----ENPVLVFEYV  131 (131)
Q Consensus       122 ----~~~~lv~E~~  131 (131)
                          ...++++||+
T Consensus        85 ~~~~~~~~lv~e~~   98 (342)
T cd07854          85 LTELNSVYIVQEYM   98 (342)
T ss_pred             ccccceEEEEeecc
Confidence                3578999885

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.83  E-value=1.1e-08  Score=67.96  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=60.9

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...+.||.|++|.||+|..  .+..+++|.+......  .....+|+..+..++ |+|++++++.+..++..++|+||+
T Consensus         2 ~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           2 KVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             eeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            4567899999999999998  5778999988654322  234557888899999 999999999998889999999985

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.83  E-value=2.7e-08  Score=67.82  Aligned_cols=70  Identities=10%  Similarity=0.031  Sum_probs=57.9

Q ss_pred             eeeeC--CCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTG--LGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g--~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||.|  +|+.||.+..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++.+..++..++++||+
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~   81 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFM   81 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecc
Confidence            35555  8999999988  7889999998754322   356788888898899999999999999999999999985

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.83  E-value=1.5e-08  Score=69.24  Aligned_cols=78  Identities=22%  Similarity=0.384  Sum_probs=61.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---hhHHHHHHHHHHHhcc-CCccccceeeEEEeC--CeeE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---YAAEFCFNNIVFASQM-NHKNVIRLIGCCLET--ENPV  125 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~--~~~~  125 (131)
                      .+.|...+.||+|+||.||++..  .+..+++|.+....   .....+.+|+.++..+ +|+|++++++++...  ...+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            34566678899999999999988  67889999885421   1234577899999999 999999999988643  3689


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        86 lv~e~~   91 (337)
T cd07852          86 LVFEYM   91 (337)
T ss_pred             EEeccc
Confidence            999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.82  E-value=5.9e-09  Score=72.71  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=64.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCe-eEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETEN-PVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~-~~lv~  128 (131)
                      ++|...+.+|.|+||.++....  .+..+++|.+......   ......|+.++.++.|||||.+.+.+..++. ++|+|
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            3566678899999999887766  6678999999765443   3567899999999999999999999988887 99999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      +|+
T Consensus        84 ~Y~   86 (426)
T KOG0589|consen   84 EYC   86 (426)
T ss_pred             eec
Confidence            995

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.82  E-value=3e-08  Score=68.25  Aligned_cols=78  Identities=24%  Similarity=0.321  Sum_probs=62.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---hhHHHHHHHHHHHhccCCccccceeeEEEeC------C
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---YAAEFCFNNIVFASQMNHKNVIRLIGCCLET------E  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~  122 (131)
                      ...|.....||+|+||.||.+..  .+..+++|.+....   .....+.+|+.++..++|+|++++++++...      .
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   94 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQ   94 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccC
Confidence            46688889999999999999988  77889999886432   1134577899999999999999999987543      3


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus        95 ~~~lv~e~~  103 (353)
T cd07850          95 DVYLVMELM  103 (353)
T ss_pred             cEEEEEecc
Confidence            578999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.82  E-value=2.3e-08  Score=69.88  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE----CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL----HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ...|.....||+|+||.||.+..    .+..+++|.+....    ...+|+.++..++|+||+++++.+......++++|
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~----~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e  166 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK----TPGREIDILKTISHRAIINLIHAYRWKSTVCMVMP  166 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccc----cHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEeh
Confidence            34577888999999999999876    34578888776432    34689999999999999999999988889999998


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      ++
T Consensus       167 ~~  168 (392)
T PHA03207        167 KY  168 (392)
T ss_pred             hc
Confidence            74

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.81  E-value=3.7e-08  Score=65.23  Aligned_cols=70  Identities=20%  Similarity=0.293  Sum_probs=56.9

Q ss_pred             eeeeCCCeEEEEEEE--CCe--eEEEEEEecCch--hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL--HDY--PVSIMKFVNSDY--AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~~--~vavk~~~~~~~--~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||++..  ++.  .+++|.+.....  ....+..|+.++.++ +|+|++++++.+...+..++++||+
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   78 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   78 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeC
Confidence            589999999999988  333  467887764322  235688999999999 7999999999999888999999984

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.81  E-value=4.4e-08  Score=67.31  Aligned_cols=83  Identities=17%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             HHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC-
Q 040342           48 NELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET-  121 (131)
Q Consensus        48 ~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~-  121 (131)
                      .++....++|.....||+|+||.||.+..  ++..+|+|.+......   ...+.+|+.++..++|+||+++.+.+... 
T Consensus        10 ~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~   89 (345)
T cd07877          10 KTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPAR   89 (345)
T ss_pred             HHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecc
Confidence            34445668888889999999999999987  6788999998753222   35577899999999999999999887542 


Q ss_pred             -----CeeEEEEee
Q 040342          122 -----ENPVLVFEY  130 (131)
Q Consensus       122 -----~~~~lv~E~  130 (131)
                           ...++++++
T Consensus        90 ~~~~~~~~~lv~~~  103 (345)
T cd07877          90 SLEEFNDVYLVTHL  103 (345)
T ss_pred             cccccccEEEEehh
Confidence                 235667664

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.81  E-value=3.4e-08  Score=64.79  Aligned_cols=69  Identities=19%  Similarity=0.270  Sum_probs=58.0

Q ss_pred             eeeeCCCeEEEEEEE-C--C--eeEEEEEEecCch-h-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-H--D--YPVSIMKFVNSDY-A-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~--~--~~vavk~~~~~~~-~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|++|.||++.+ .  +  ..+++|.+..... . ...+..|+.++.+++|+|++++++.+.. ...++++||+
T Consensus         2 ~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~   77 (257)
T cd05040           2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELA   77 (257)
T ss_pred             cCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEec
Confidence            589999999999987 2  2  2589999876554 2 4678899999999999999999999877 8889999984

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.81  E-value=4e-08  Score=65.52  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=56.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhcc---CCccccceeeEEEe-----CCe
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQM---NHKNVIRLIGCCLE-----TEN  123 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l---~h~niv~l~g~~~~-----~~~  123 (131)
                      |.....||+|+||.||++..  ++..+|+|.+......   .....+|+.++..+   +|+|++++++++..     ...
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            55678899999999999988  6788999988753221   23455677766654   69999999998754     245


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus        82 ~~lv~e~~   89 (288)
T cd07863          82 VTLVFEHV   89 (288)
T ss_pred             EEEEEccc
Confidence            78999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.81  E-value=4.2e-08  Score=64.52  Aligned_cols=70  Identities=23%  Similarity=0.414  Sum_probs=54.8

Q ss_pred             eeeeCCCeEEEEEEE-C----CeeEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEe-CCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL-H----DYPVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLE-TENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~-~----~~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~~lv~E~~  131 (131)
                      .||+|+||.||++.. .    ...+++|.+.....  ....+..|+.++..++|+|++++++.+.. +...++++||+
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           2 VIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             cccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecC
Confidence            589999999999986 2    34689998754322  23568889999999999999999997753 45678999874

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.80  E-value=3.4e-08  Score=71.08  Aligned_cols=81  Identities=11%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC---
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE---  122 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~---  122 (131)
                      ......|...+.||+|+||.||.+..  ++..+|+|.+......   ...+.+|+.++..++|+|++.+...+...+   
T Consensus        28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~  107 (496)
T PTZ00283         28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRN  107 (496)
T ss_pred             cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccC
Confidence            33456888889999999999999987  7889999998754322   345788999999999999999887664322   


Q ss_pred             -----eeEEEEeeC
Q 040342          123 -----NPVLVFEYV  131 (131)
Q Consensus       123 -----~~~lv~E~~  131 (131)
                           ..++|+||+
T Consensus       108 ~~~~~~i~lV~Ey~  121 (496)
T PTZ00283        108 PENVLMIALVLDYA  121 (496)
T ss_pred             cccceEEEEEEeCC
Confidence                 367899985

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.80  E-value=4.7e-08  Score=65.34  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh-----HHHHHHHHHHHhcc-CCccccceeeEEEeCCee
Q 040342           56 NYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA-----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENP  124 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~-----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~  124 (131)
                      +|.....||+|+||.||.+..     .|..+++|.+......     ...+..|+.++..+ +|+||+.+.+++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            355678899999999999876     4678999998753221     25577899999999 589999999999888889


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        81 ~lv~e~~   87 (290)
T cd05613          81 HLILDYI   87 (290)
T ss_pred             EEEEecC
Confidence            9999985

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.80  E-value=2.4e-08  Score=72.46  Aligned_cols=80  Identities=19%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccC-CccccceeeEEEeCCee
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMN-HKNVIRLIGCCLETENP  124 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~  124 (131)
                      ....+|....+||+|+||.|+.+..  ++..+|||.++...-    .......|-+|+.... ||-+++++.++...+++
T Consensus       365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            3446778889999999999999998  677899999986532    2355677777777665 99999999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      +.||||+
T Consensus       445 ~fvmey~  451 (694)
T KOG0694|consen  445 FFVMEYV  451 (694)
T ss_pred             EEEEEec
Confidence            9999995

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.80  E-value=1.8e-08  Score=67.74  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC------
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE------  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------  122 (131)
                      .++|.....||+|+||.||.+..  ++..+++|.+......   ...+.+|+.++..++|+|++++++.+....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            45778888999999999999998  6788999988643322   245678999999999999999998775432      


Q ss_pred             --eeEEEEeeC
Q 040342          123 --NPVLVFEYV  131 (131)
Q Consensus       123 --~~~lv~E~~  131 (131)
                        ..++++||+
T Consensus        87 ~~~~~lv~~~~   97 (311)
T cd07866          87 RGSVYMVTPYM   97 (311)
T ss_pred             CceEEEEEecC
Confidence              468898874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.80  E-value=2e-08  Score=65.68  Aligned_cols=75  Identities=19%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.||+|.+|.+|++..  ++..+++|.+.....   ....+..|+.++..++|+|++++.+.+......++++||+
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYA   81 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhc
Confidence            55678899999999999987  677899998875332   2356788999999999999999999998888999999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.80  E-value=2e-08  Score=68.71  Aligned_cols=77  Identities=21%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeC-----Cee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLET-----ENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~~  124 (131)
                      ..|.....||+|+||.||.+..  ++..+++|.+.....   ....+..|+.++..++|+|++++.+.+...     ...
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            3567778999999999999988  678899998875321   134567899999999999999999877543     357


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        85 ~lv~e~~   91 (337)
T cd07858          85 YIVYELM   91 (337)
T ss_pred             EEEEeCC
Confidence            9999985

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.80  E-value=3.7e-08  Score=65.13  Aligned_cols=76  Identities=18%  Similarity=0.308  Sum_probs=60.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CC----eeEEEEEEecCch-h-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HD----YPVSIMKFVNSDY-A-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~----~~vavk~~~~~~~-~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+|...+.||+|+||.||+|.. ..    ..+++|....... . ...+.+|+.++..++|+|++++++.+.. +..+++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            3456678999999999999987 32    3588888765442 2 3578899999999999999999998864 567899


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        85 ~e~~   88 (270)
T cd05056          85 MELA   88 (270)
T ss_pred             EEcC
Confidence            9974

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.5e-09  Score=81.54  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=58.8

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      -..+|.....||+|+||.||++..  +|..+|+|.+......  .....+|+.++.+++|||+|+++..+.+..
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~  550 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVEST  550 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccC
Confidence            445677778899999999999988  8999999999866422  366889999999999999999998886543

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.79  E-value=2.8e-08  Score=65.21  Aligned_cols=69  Identities=20%  Similarity=0.173  Sum_probs=59.1

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||.|.||.||.+..  .+..+++|.+......    ...+..|+.++..++|+|++++.+.+..+...++++||+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   75 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYL   75 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecC
Confidence            58899999999998  5889999998754331    356888899999999999999999998888999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.78  E-value=5.3e-08  Score=63.83  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe-CCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE-TENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~~lv~E~  130 (131)
                      |...+.||+|++|.||.+..  .+..+++|.+......   ...+..|+.++..++|+|++++.+.+.. ....++++||
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~   81 (257)
T cd08223           2 YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGF   81 (257)
T ss_pred             ceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecc
Confidence            56678899999999999988  6678999998653322   3567889999999999999999987754 4467899997


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (257)
T cd08223          82 C   82 (257)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.77  E-value=2.5e-08  Score=73.31  Aligned_cols=83  Identities=17%  Similarity=0.315  Sum_probs=67.4

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE-----C----CeeEEEEEEecCchh--HHHHHHHHHHHhccC-Cccccceee
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL-----H----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIG  116 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~-----~----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g  116 (131)
                      .++....++...+.+|+|.||.|++|..     .    ...||||.+......  ...+..|+.+|..+. |+|++.++|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            3455556666677999999999999985     1    346899998765433  467999999999886 999999999


Q ss_pred             EEEeCCeeEEEEeeC
Q 040342          117 CCLETENPVLVFEYV  131 (131)
Q Consensus       117 ~~~~~~~~~lv~E~~  131 (131)
                      +|...++.++|.||+
T Consensus       370 ~~t~~~~~~~v~Ey~  384 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYA  384 (609)
T ss_pred             eeccCCceEEEEEec
Confidence            999989999999985

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.77  E-value=3.5e-08  Score=65.47  Aligned_cols=74  Identities=22%  Similarity=0.255  Sum_probs=62.5

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .....||.|.+|.||++..  ++..+++|.+......   ...+..|+.++..++|+|++++++.+..++..++++||+
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           2 QKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             ccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            4457899999999999988  6788999988754322   356788999999999999999999998889999999985

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.76  E-value=9.6e-09  Score=75.35  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      -+||+|.||+||.|..  +...+|+|.+...... .+.+..||.+.+.++|+|||+++|++..+++.-|.||-
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEq  653 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQ  653 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeec
Confidence            4699999999999988  5567899998765444 57789999999999999999999999999998898884

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.75  E-value=6.3e-08  Score=64.50  Aligned_cols=75  Identities=19%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .|...+.||+|+||.||++.+  ++.    .+++|.+......  ...+..++..+..+.|+|++++++++. +...+++
T Consensus         8 ~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~i   86 (279)
T cd05111           8 ELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQLV   86 (279)
T ss_pred             hceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEEE
Confidence            455678899999999999988  443    4677777543222  255777888889999999999999875 4557788


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        87 ~e~~   90 (279)
T cd05111          87 TQLS   90 (279)
T ss_pred             EEeC
Confidence            8874

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.75  E-value=7e-08  Score=64.17  Aligned_cols=76  Identities=21%  Similarity=0.333  Sum_probs=59.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..|...+.||+|+||.||++.+  ++.    .+|+|.+......  ...+..|+.++..+.|+|++.+++.+.. ...++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEE
Confidence            4566678999999999999987  443    4789988654322  3568889999999999999999998865 45678


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        86 ~~~~~   90 (279)
T cd05109          86 VTQLM   90 (279)
T ss_pred             EEEcC
Confidence            88875

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.75  E-value=3.3e-08  Score=67.29  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=62.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCC-----eeEE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETE-----NPVL  126 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-----~~~l  126 (131)
                      |.....||.|.+|.||++..  .+..+++|.+.....   ....+..|+.++..++|+|++++.+.+....     ..++
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~l   81 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYI   81 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEE
Confidence            55678899999999999998  578899998876432   2356889999999999999999999887654     7899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        82 v~e~~   86 (330)
T cd07834          82 VTELM   86 (330)
T ss_pred             Eecch
Confidence            99975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.75  E-value=2.3e-08  Score=66.36  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .....||+|.+|.||.+..  ++..+++|.+......   ...+..|+.++..++|+|++++++.+...+..++++||+
T Consensus         2 ~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           2 EKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             eeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            3457799999999999998  5788999998764311   356788999999999999999999998888999999984

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=98.75  E-value=5.5e-08  Score=72.38  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=70.2

Q ss_pred             HHHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEe---
Q 040342           47 ENELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLE---  120 (131)
Q Consensus        47 ~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~---  120 (131)
                      ++.+...++-|....++|.|.+|.||++..  ++...|+|++......+.+...|..++..+. |+|++.++|++.-   
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~   90 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDP   90 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecC
Confidence            344445666777789999999999999987  7888999999887766777888888888775 9999999998853   


Q ss_pred             --CCeeEEEEeeC
Q 040342          121 --TENPVLVFEYV  131 (131)
Q Consensus       121 --~~~~~lv~E~~  131 (131)
                        ++.+||||||+
T Consensus        91 ~~~DqLWLVMEfC  103 (953)
T KOG0587|consen   91 GNGDQLWLVMEFC  103 (953)
T ss_pred             CCCCeEEEEeecc
Confidence              67899999996

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=98.74  E-value=2.6e-08  Score=73.53  Aligned_cols=78  Identities=15%  Similarity=0.221  Sum_probs=60.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CC-eeEEEEEEecCchh-HHHHHHHHHHHhccC-CccccceeeEE-Ee----C--C
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HD-YPVSIMKFVNSDYA-AEFCFNNIVFASQMN-HKNVIRLIGCC-LE----T--E  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~-~~vavk~~~~~~~~-~~~~~~e~~~l~~l~-h~niv~l~g~~-~~----~--~  122 (131)
                      ...+.+.+.|.+|+|+.||.+.. .+ ..+|+|++-..... ...+.+|+.+|+.|. |+|||.+++.. ..    .  -
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            34455678899999999999999 44 88999988765444 477899999999997 99999999942 21    1  2


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..+|+|||+
T Consensus       116 EvllLmEyC  124 (738)
T KOG1989|consen  116 EVLLLMEYC  124 (738)
T ss_pred             EEEeehhhc
Confidence            567888885

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.73  E-value=5.2e-09  Score=70.36  Aligned_cols=72  Identities=17%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.||+|+++.|-.+..  +|..+|||++...... .....+|+.++...+ |+||++++..+.+++..|||||-|
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm  158 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKM  158 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecc
Confidence            46799999999998887  8899999999876444 356889999998886 999999999999999999999954

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.73  E-value=7.6e-08  Score=64.28  Aligned_cols=75  Identities=13%  Similarity=0.101  Sum_probs=60.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh-----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeE
Q 040342           57 YDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA-----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~-----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~  125 (131)
                      |...+.||+|++|.||.+..     ++..+++|.+......     ...+..|+.++..+ +|+|++++.+.+..+...+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            45567899999999999875     3567999988743211     24577899999999 5999999999998888999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        82 lv~e~~   87 (288)
T cd05583          82 LILDYV   87 (288)
T ss_pred             EEEecC
Confidence            999985

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>PTZ00284 protein kinase; Provisional

Probab=98.73  E-value=5.9e-08  Score=69.28  Aligned_cols=82  Identities=9%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCc------cccceeeEEEe-
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHK------NVIRLIGCCLE-  120 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~------niv~l~g~~~~-  120 (131)
                      +....+.|...+.||+|+||.||++..  .+..||+|.+............|+.++..++|.      +++.+.+++.. 
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~  203 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNE  203 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcC
Confidence            334456788888999999999999988  677899999975433334456677777666544      57777777754 


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ..+.++|+|++
T Consensus       204 ~~~~~iv~~~~  214 (467)
T PTZ00284        204 TGHMCIVMPKY  214 (467)
T ss_pred             CceEEEEEecc
Confidence            34678888763

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.72  E-value=1.8e-08  Score=72.61  Aligned_cols=77  Identities=14%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---CCeeEEEE------------------EEecCchhHHHHHHHHHHHhccCCcccc
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---HDYPVSIM------------------KFVNSDYAAEFCFNNIVFASQMNHKNVI  112 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---~~~~vavk------------------~~~~~~~~~~~~~~e~~~l~~l~h~niv  112 (131)
                      ...|.....||+|+||.||.+..   .+...+.+                  .+.........+.+|+.++..++|+||+
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            46788889999999999998865   11111111                  1111111124578999999999999999


Q ss_pred             ceeeEEEeCCeeEEEEee
Q 040342          113 RLIGCCLETENPVLVFEY  130 (131)
Q Consensus       113 ~l~g~~~~~~~~~lv~E~  130 (131)
                      ++++++...+..++++|+
T Consensus       227 ~l~~~~~~~~~~~lv~e~  244 (501)
T PHA03210        227 KIEEILRSEANTYMITQK  244 (501)
T ss_pred             cEeEEEEECCeeEEEEec
Confidence            999999988889999875

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=98.72  E-value=2.3e-08  Score=68.89  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhH----HHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAA----EFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~----~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      |.....||.|..|.||.+..  .+...|+|.+.......    .....|-.||..++||-+..|++.+..+...+++|||
T Consensus        79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~mey  158 (459)
T KOG0610|consen   79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEY  158 (459)
T ss_pred             HHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEec
Confidence            44467799999999999998  45789999998765442    3466788899999999999999999999999999999


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       159 C  159 (459)
T KOG0610|consen  159 C  159 (459)
T ss_pred             C
Confidence            6

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=98.72  E-value=9.3e-08  Score=65.21  Aligned_cols=69  Identities=9%  Similarity=0.044  Sum_probs=53.8

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc---CCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM---NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l---~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+|+||.||.+..  .+..+|+|.+......    ......|..++...   .|+|++.+.+.+..++..++|+||+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~   78 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYM   78 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCC
Confidence            68999999999988  6788999998643221    12344555565544   6999999999999889999999985

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.72  E-value=1.5e-08  Score=72.63  Aligned_cols=75  Identities=16%  Similarity=0.214  Sum_probs=62.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---------HHHHHHHHHHHhccC---CccccceeeEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---------AEFCFNNIVFASQMN---HKNVIRLIGCCLE  120 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---------~~~~~~e~~~l~~l~---h~niv~l~g~~~~  120 (131)
                      ++|.....+|+|+||.|+.+.+  +...|.+|.+....--         -.....||.||..+.   |+||++++..+..
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            4567788899999999999999  6678999998754311         144778999999987   9999999999999


Q ss_pred             CCeeEEEEe
Q 040342          121 TENPVLVFE  129 (131)
Q Consensus       121 ~~~~~lv~E  129 (131)
                      +++.||++|
T Consensus       641 dd~yyl~te  649 (772)
T KOG1152|consen  641 DDYYYLETE  649 (772)
T ss_pred             CCeeEEEec
Confidence            999999887

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.72  E-value=7.6e-08  Score=64.87  Aligned_cols=76  Identities=24%  Similarity=0.412  Sum_probs=58.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..|...+.||+|+||.||++..  .+.    .+++|.+......  ...+.+|+.++..++|+|++++++.+... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            3455678899999999999987  443    4688887654322  24688899999999999999999998654 4567


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        86 v~e~~   90 (303)
T cd05110          86 VTQLM   90 (303)
T ss_pred             eehhc
Confidence            78764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.71  E-value=1.3e-07  Score=62.60  Aligned_cols=73  Identities=18%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             CcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC------e
Q 040342           58 DRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE------N  123 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------~  123 (131)
                      ...+.||+|+||.||++..     .+..+++|.+......   ...+.+|+.++..++|+|++++++.+....      .
T Consensus         2 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   81 (273)
T cd05074           2 TLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPI   81 (273)
T ss_pred             cchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccc
Confidence            3467899999999999986     3567999988754322   356888999999999999999999875432      2


Q ss_pred             eEEEEee
Q 040342          124 PVLVFEY  130 (131)
Q Consensus       124 ~~lv~E~  130 (131)
                      .+++++|
T Consensus        82 ~~~~~~~   88 (273)
T cd05074          82 PMVILPF   88 (273)
T ss_pred             eEEEEec
Confidence            3566665

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.71  E-value=1.2e-07  Score=63.09  Aligned_cols=74  Identities=23%  Similarity=0.267  Sum_probs=57.7

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhcc---CCccccceeeEEEeCCe-----e
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQM---NHKNVIRLIGCCLETEN-----P  124 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l---~h~niv~l~g~~~~~~~-----~  124 (131)
                      ...+.||+|.||.||.+..  .+..+++|.+......   ...+..|+.++..+   .|+|++++.+.+...+.     .
T Consensus         2 ~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~   81 (287)
T cd07838           2 EELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKL   81 (287)
T ss_pred             eEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCcee
Confidence            4567899999999999998  5788999998743222   23466777766655   59999999999987666     8


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~l~~e~~   88 (287)
T cd07838          82 TLVFEHV   88 (287)
T ss_pred             EEEehhc
Confidence            9999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.71  E-value=3.3e-08  Score=67.85  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=62.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCe-----
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETEN-----  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~-----  123 (131)
                      .++|.....||+|.+|.||.+..  .+..+++|.+.....   ....+.+|+.+++.+.|+|++++.+.+...+.     
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQ   93 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccc
Confidence            45677788999999999999998  677899998864321   13557789999999999999999887765544     


Q ss_pred             -eEEEEeeC
Q 040342          124 -PVLVFEYV  131 (131)
Q Consensus       124 -~~lv~E~~  131 (131)
                       .++++||+
T Consensus        94 ~~~lv~e~~  102 (343)
T cd07851          94 DVYLVTHLM  102 (343)
T ss_pred             cEEEEEecC
Confidence             88999874

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.70  E-value=7.3e-08  Score=62.86  Aligned_cols=69  Identities=16%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||.|+||.||.+..  .+..+++|.+......    ...+..|+.++..++|+|++++++.+..+...++++||+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   75 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYA   75 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecC
Confidence            68999999999998  5788999988754322    346788999999999999999999998889999999974

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.70  E-value=3.9e-08  Score=64.63  Aligned_cols=75  Identities=12%  Similarity=0.094  Sum_probs=56.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc------hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD------YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      |.....||+|+||.||++..  .+...+++.++...      .....+..|+.++..++|+|++++++.+...+..++++
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            45567899999999999987  33444555544311      11234667888999999999999999998888899999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        82 e~~   84 (260)
T cd08222          82 EYC   84 (260)
T ss_pred             EeC
Confidence            985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.69  E-value=5.2e-09  Score=70.13  Aligned_cols=78  Identities=23%  Similarity=0.335  Sum_probs=63.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---CC---eeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe-CCe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---HD---YPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE-TEN  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---~~---~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~  123 (131)
                      ...|.....||+|.||.||++..   ++   ..+|+|.++.....   +....+|+.+++.++|+|++++..++.. +..
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            34566778899999999999966   22   25788888765333   3667899999999999999999998877 778


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .+|++||.
T Consensus       103 v~l~fdYA  110 (438)
T KOG0666|consen  103 VWLLFDYA  110 (438)
T ss_pred             EEEEehhh
Confidence            99999984

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=98.66  E-value=1.5e-08  Score=70.80  Aligned_cols=73  Identities=22%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHh--ccCCccccceeeEEEeCC----eeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFAS--QMNHKNVIRLIGCCLETE----NPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~--~l~h~niv~l~g~~~~~~----~~~lv~E  129 (131)
                      .+.....+|+|.||.||+|.+.+..||||.+....  .+.|..|-.|..  .+.|+||+++++.-...+    ..+||+|
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~--kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~  288 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQE--KQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTE  288 (534)
T ss_pred             chhhHHHhhcCccceeehhhccCceeEEEecCHHH--HHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEee
Confidence            33446779999999999999977999999987544  345666666554  567999999998876544    6788888


Q ss_pred             e
Q 040342          130 Y  130 (131)
Q Consensus       130 ~  130 (131)
                      |
T Consensus       289 f  289 (534)
T KOG3653|consen  289 F  289 (534)
T ss_pred             e
Confidence            7

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.64  E-value=3.3e-07  Score=60.24  Aligned_cols=71  Identities=18%  Similarity=0.083  Sum_probs=54.4

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHH-HhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVF-ASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~-l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|.||.||++..  .+..+++|.+......    ...+..|..+ .....|+|++++++.+..++..++++||+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYL   79 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEecc
Confidence            4589999999999988  6788999998654321    1223444443 34557999999999999889999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.63  E-value=4.5e-07  Score=57.99  Aligned_cols=74  Identities=19%  Similarity=0.239  Sum_probs=62.8

Q ss_pred             CcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...+.||+|.+|.||++..  .+..+++|.+......  ...+.+|+..+..++|+|++++++.+......++++||+
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        2 ELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             ceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEecc
Confidence            3467899999999999998  4788999998865432  456888999999999999999999998888899999974

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=98.57  E-value=1.2e-07  Score=67.43  Aligned_cols=79  Identities=13%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~  125 (131)
                      ...+|..++.||+|+|++|+.+..  .+..+|+|.+...---    ..-...|-.+|..| .||.|++|+--+.+...+|
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY  150 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY  150 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence            446788899999999999999998  7789999998753211    12255777788888 6999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus       151 FvLe~A  156 (604)
T KOG0592|consen  151 FVLEYA  156 (604)
T ss_pred             EEEEec
Confidence            999985

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.56  E-value=8.2e-07  Score=59.25  Aligned_cols=70  Identities=7%  Similarity=0.065  Sum_probs=52.0

Q ss_pred             eeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHH---HhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVF---ASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~---l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||.+..  .+..+|+|.+......    ...+..+..+   +...+|+|++.+.+.+...+..++|+||+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLM   79 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecC
Confidence            479999999999988  6788999988653221    1223344333   33346999999999998888999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.55  E-value=2.7e-07  Score=62.32  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=54.0

Q ss_pred             eeeCCCeEEEEEEECCeeEEEEEEecCc---hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFLHDYPVSIMKFVNSD---YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~~~~~vavk~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +|.|+++.++.+...+..+|+|.+....   .....+..|+.++..++|+|++++++++...+..++++||+
T Consensus        10 ~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~   81 (314)
T cd08216          10 FEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLM   81 (314)
T ss_pred             hcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEecc
Confidence            4455555555554478899999987542   12356889999999999999999999999889999999985

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.53  E-value=8.3e-09  Score=74.86  Aligned_cols=79  Identities=13%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ..++|.....+|+|.+|.||++..  .+...|+|.++..... -...+.|+-+++..+|+||+.++|.+...+.++|.||
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicME   92 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICME   92 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEE
Confidence            345677778899999999999988  6778889998865443 3557789999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        93 yc   94 (829)
T KOG0576|consen   93 YC   94 (829)
T ss_pred             ec
Confidence            95

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.51  E-value=1.3e-06  Score=58.20  Aligned_cols=70  Identities=7%  Similarity=0.037  Sum_probs=52.3

Q ss_pred             eeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHH---HHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNI---VFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~---~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||.+..  .+..+|+|.+......    ...+..+.   ..+....|++++.+.+.+...+..++|+||+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM   79 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecC
Confidence            379999999999987  6789999988753221    11233333   3344457999999999998888999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.50  E-value=8.7e-07  Score=60.51  Aligned_cols=75  Identities=19%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--C--CeeEEEEEEecCchh---HHHHHHHHHHHhccC-CccccceeeEEEeC----Cee
Q 040342           57 YDRQKVITTGLGYELFKGFL--H--DYPVSIMKFVNSDYA---AEFCFNNIVFASQMN-HKNVIRLIGCCLET----ENP  124 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~--~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~-h~niv~l~g~~~~~----~~~  124 (131)
                      |...+.||+|.||.||.+..  .  +..+|+|.+......   ...+.+|+.++..+. |+|++++++.+...    ...
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence            45567899999999999998  4  678999988643211   355778999999884 99999999875432    346


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        82 ~~~~e~~   88 (332)
T cd07857          82 YLYEELM   88 (332)
T ss_pred             EEEEecc
Confidence            7777763

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.49  E-value=6.5e-09  Score=75.55  Aligned_cols=72  Identities=10%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...||.|+||.||++..  .+...|.|.+...+.. -..|.-||.||..+.||+|++|++.+...+.++|+.||+
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence            34589999999999987  4445567777654433 467899999999999999999999888888999999985

>PRK10345 hypothetical protein; Provisional

Probab=98.47  E-value=1.6e-06  Score=55.89  Aligned_cols=72  Identities=8%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             CcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh-HHHHHHHHHHHhcc-----CCccccceeeEEEeCC---eeE-EE
Q 040342           58 DRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA-AEFCFNNIVFASQM-----NHKNVIRLIGCCLETE---NPV-LV  127 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l-----~h~niv~l~g~~~~~~---~~~-lv  127 (131)
                      .....||+|+|+.||....... .++|.+...... ...+.+|+.++..+     .|+||++++|.+..+.   ..+ +|
T Consensus         5 ~~~~~LG~G~~~~Vy~hp~~~~-k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I   83 (210)
T PRK10345          5 SEQSPLGTGRHRKCYAHPEDAQ-RCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVI   83 (210)
T ss_pred             CCcceecCCCceEEEECCCCcC-eEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEE
Confidence            4467899999999996222333 368887654322 45689999999998     5799999999998753   333 67


Q ss_pred             Eee
Q 040342          128 FEY  130 (131)
Q Consensus       128 ~E~  130 (131)
                      +||
T Consensus        84 ~e~   86 (210)
T PRK10345         84 ADF   86 (210)
T ss_pred             ecC
Confidence            876

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.46  E-value=2.3e-06  Score=53.73  Aligned_cols=69  Identities=22%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             eeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+|.+|.+|++..  .+..+++|.+......  ...+.+|+..+..+.|++++++++.+......++++||+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~   73 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYC   73 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecC
Confidence            58999999999998  3888999998866542  356889999999999999999999998888899999974

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.46  E-value=7.8e-07  Score=64.17  Aligned_cols=79  Identities=9%  Similarity=0.165  Sum_probs=53.4

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE------------------CCeeEEEEEEecCchh-HHH--------------HHHH
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL------------------HDYPVSIMKFVNSDYA-AEF--------------CFNN   99 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~------------------~~~~vavk~~~~~~~~-~~~--------------~~~e   99 (131)
                      ..++|...+.||+|+||.||+|..                  .+..||+|.+...... ...              ...|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            456888899999999999999964                  2346999998653322 122              2345


Q ss_pred             HHHHhccCCccc-----cceeeEEEe--------CCeeEEEEeeC
Q 040342          100 IVFASQMNHKNV-----IRLIGCCLE--------TENPVLVFEYV  131 (131)
Q Consensus       100 ~~~l~~l~h~ni-----v~l~g~~~~--------~~~~~lv~E~~  131 (131)
                      +.++.+++|.++     +.++++|..        .+..+||+||+
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~  267 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFE  267 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcC
Confidence            566666666544     566666543        34689999986

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.45  E-value=5.9e-07  Score=63.48  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=62.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-----C---ccccceeeEEEe----
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-----H---KNVIRLIGCCLE----  120 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-----h---~niv~l~g~~~~----  120 (131)
                      ..|....+||.|.|++||.+..  +...||+|+.+...-.......||.+|.+++     |   ..||+|++.+.-    
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpN  157 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPN  157 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCC
Confidence            4566778999999999999988  6678999998877666677889999998764     2   258999988853    


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      +.+++||+|++
T Consensus       158 G~HVCMVfEvL  168 (590)
T KOG1290|consen  158 GQHVCMVFEVL  168 (590)
T ss_pred             CcEEEEEehhh
Confidence            56899999974

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.44  E-value=4.5e-08  Score=64.44  Aligned_cols=76  Identities=11%  Similarity=0.088  Sum_probs=60.3

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHH-HhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVF-ASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~-l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +++....||.|+||.|++-..  .|..+|||.+......  ...++.|... ++.-..+|||+++|.+...+..||-||+
T Consensus        65 ~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMEL  144 (361)
T KOG1006|consen   65 NLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMEL  144 (361)
T ss_pred             hHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHH
Confidence            344456799999999999887  7889999999876543  3557777765 4445689999999999888889999987


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      |
T Consensus       145 M  145 (361)
T KOG1006|consen  145 M  145 (361)
T ss_pred             H
Confidence            6

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.42  E-value=4.4e-06  Score=55.38  Aligned_cols=73  Identities=16%  Similarity=0.127  Sum_probs=52.2

Q ss_pred             cCCCcCCe--eeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKV--ITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~--lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +++...+.  +|+|.||.||.+..  ++..+++|.+........    |+.....+ .|+|++++++.+...+..++|+|
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~----e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e   89 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI----EPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMD   89 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh----hHHHHHHhhcCCCEEEEEEEEecCCeeEEEEE
Confidence            34444444  59999999999987  677889998765322211    22222212 69999999999998899999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        90 ~~   91 (267)
T PHA03390         90 YI   91 (267)
T ss_pred             cC
Confidence            85

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.42  E-value=4.1e-08  Score=74.85  Aligned_cols=83  Identities=14%  Similarity=0.100  Sum_probs=68.9

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      ++....++|...++||.|+||.|.....  .+..+|.|.++....-    ..-|..|-.+|.--+.+.|++++-.+.+..
T Consensus        69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~  148 (1317)
T KOG0612|consen   69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDER  148 (1317)
T ss_pred             HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCcc
Confidence            3444567888899999999999999888  6778999999875433    244777778888888999999999999999


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ++|+|||||
T Consensus       149 ~LYlVMdY~  157 (1317)
T KOG0612|consen  149 YLYLVMDYM  157 (1317)
T ss_pred             ceEEEEecc
Confidence            999999997

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=2e-07  Score=66.70  Aligned_cols=76  Identities=20%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ..|+..+.||.|+-+.||++.. +...+|+|.......+   ...|.+|+..|.++. |.+|++++++-..++.+|||||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            3466678899999999999988 5567777766543222   367999999999996 9999999999999999999999


Q ss_pred             e
Q 040342          130 Y  130 (131)
Q Consensus       130 ~  130 (131)
                      |
T Consensus       441 ~  441 (677)
T KOG0596|consen  441 C  441 (677)
T ss_pred             c
Confidence            7

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.41  E-value=2.7e-08  Score=64.29  Aligned_cols=75  Identities=21%  Similarity=0.371  Sum_probs=61.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEeC--CeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLET--ENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~--~~~~lv~E  129 (131)
                      ++|+....+|.|.++.|+.|..  +...+.+|.+++-.  ...+.+|+.+|..++ |+||+++++...++  ..+.||+|
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk--kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE  115 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK--KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFE  115 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH--HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhh
Confidence            4566778899999999999986  66788999988654  356889999999998 99999999988653  35678888


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       116 ~v  117 (338)
T KOG0668|consen  116 YV  117 (338)
T ss_pred             hh
Confidence            74

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.39  E-value=3.4e-06  Score=53.41  Aligned_cols=70  Identities=14%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             CCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---------------------------HHHHHHHHHHHhccCCccc
Q 040342           60 QKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---------------------------AEFCFNNIVFASQMNHKNV  111 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---------------------------~~~~~~e~~~l~~l~h~ni  111 (131)
                      ...||+|++|.||.+.. +|..+|+|.+......                           ...+..|...+..+.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            45799999999999998 7899999998764211                           0123567888888888887


Q ss_pred             cceeeEEEeCCeeEEEEeeC
Q 040342          112 IRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       112 v~l~g~~~~~~~~~lv~E~~  131 (131)
                      .........  ..+|||||+
T Consensus        82 ~~p~~~~~~--~~~lVmE~~   99 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFI   99 (190)
T ss_pred             CCceEEEec--CCEEEEEEe
Confidence            544433322  248999985

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.38  E-value=1.3e-06  Score=55.44  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=48.2

Q ss_pred             CCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh--H-------------------------HHHHHHHHHHhccCCccc
Q 040342           60 QKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA--A-------------------------EFCFNNIVFASQMNHKNV  111 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~--~-------------------------~~~~~e~~~l~~l~h~ni  111 (131)
                      ...||+|+||.||.+.. +|..+|+|.++.....  .                         .....|+..+..+.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            35799999999999988 7899999999754211  0                         112348888888887766


Q ss_pred             cceeeEEEeCCeeEEEEeeC
Q 040342          112 IRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       112 v~l~g~~~~~~~~~lv~E~~  131 (131)
                      ....... . ...+|||||+
T Consensus        82 ~~p~~~~-~-~~~~iVmE~i   99 (190)
T cd05147          82 PCPEPIL-L-KSHVLVMEFI   99 (190)
T ss_pred             CCCcEEE-e-cCCEEEEEEe
Confidence            4333222 2 2348999985

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.37  E-value=1.8e-07  Score=67.43  Aligned_cols=73  Identities=19%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             cCCeeeeCCCeEEEEEEE--CCeeEEEEEEe-----cCchhHHHHHHHHHHHhccCCccccceeeEEEeCCe--eEEEEe
Q 040342           59 RQKVITTGLGYELFKGFL--HDYPVSIMKFV-----NSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETEN--PVLVFE  129 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~--~~~~vavk~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~--~~lv~E  129 (131)
                      ...+||+|+|-+||+|..  .|..||=..++     ......+.|..|+.+|+.|+|+||++++..+.+...  .-+|+|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            367899999999999998  55555422221     111123678999999999999999999999987655  667777


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      +|
T Consensus       124 L~  125 (632)
T KOG0584|consen  124 LF  125 (632)
T ss_pred             cc
Confidence            64

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.34  E-value=2.9e-06  Score=54.31  Aligned_cols=71  Identities=21%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             CeeeeCCCeEEEEEEECCeeEEEEEEecCchh---------HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..||+|.+|.||.+.+.+..+++|........         ...+.+|+.++..+.|+++.....++...+..++++||+
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   81 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYI   81 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEe
Confidence            46899999999999887777888876542211         134678899999999998887777766677789999985

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.27  E-value=4.5e-06  Score=53.00  Aligned_cols=70  Identities=20%  Similarity=0.257  Sum_probs=51.6

Q ss_pred             eeeeCCCeEEEEEEECCeeEEEEEEecCch-----h----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFLHDYPVSIMKFVNSDY-----A----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~~~~~vavk~~~~~~~-----~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||++.+.+..+++|.......     .    ...+.+|+.++..+.|.++......+...+..++++||+
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            379999999999988777888888653211     1    144678999999998877665555555566778999985

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.26  E-value=5.3e-06  Score=53.43  Aligned_cols=65  Identities=18%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             CCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           67 LGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        67 ~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +||.||.+..  ++..+++|.+......  ...+..|+..+..++|+|++++.+.+......++++||+
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~   69 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYC   69 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCC
Confidence            4789999998  5788999998765432  367889999999999999999999999888999999974

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.26  E-value=2.9e-07  Score=64.72  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--------HHHHHHHHHHHhccCCccccceeeEEEe-CCee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--------AEFCFNNIVFASQMNHKNVIRLIGCCLE-TENP  124 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--------~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~  124 (131)
                      .|-....||.|+|+.||++..  ....||+|+-..+...        .....+|..|...++|+.||++++++.- .+..
T Consensus       464 RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsF  543 (775)
T KOG1151|consen  464 RYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSF  543 (775)
T ss_pred             HHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccc
Confidence            344467899999999999998  5667889876544322        1346788899999999999999999864 4567


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      +-|+||+
T Consensus       544 CTVLEYc  550 (775)
T KOG1151|consen  544 CTVLEYC  550 (775)
T ss_pred             eeeeeec
Confidence            7889885

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.26  E-value=5.4e-06  Score=54.07  Aligned_cols=80  Identities=14%  Similarity=0.029  Sum_probs=60.8

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhH----HH------HHHHHHHHhccCCccccceeeEEEeC
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAA----EF------CFNNIVFASQMNHKNVIRLIGCCLET  121 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~----~~------~~~e~~~l~~l~h~niv~l~g~~~~~  121 (131)
                      ...+.|...+.+|.|.||.||....++..+++|.+.+.....    ..      +.+|+..+.++.|+++..+.......
T Consensus        28 ~l~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         28 FLSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             HhhCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            345778888999999999999865566689999997543321    11      57888899999999999887765432


Q ss_pred             --------CeeEEEEeeC
Q 040342          122 --------ENPVLVFEYV  131 (131)
Q Consensus       122 --------~~~~lv~E~~  131 (131)
                              ...+|+|||+
T Consensus       108 ~~~~~~~~~~~~lvmEyi  125 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYI  125 (232)
T ss_pred             ccccccccCCeEEEEEEE
Confidence                    3578999985

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.23  E-value=1.6e-07  Score=72.66  Aligned_cols=76  Identities=16%  Similarity=0.262  Sum_probs=62.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ++....+||.|.||.||.+..  +|...|+|.+.-....   ...+.+|..++..+.|||+|+++|+-...+..+|.|||
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEy 1315 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEY 1315 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHH
Confidence            445578899999999999998  7778888877532221   25578899999999999999999999888888998888


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus      1316 C 1316 (1509)
T KOG4645|consen 1316 C 1316 (1509)
T ss_pred             h
Confidence            5

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.18  E-value=5.9e-07  Score=59.60  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---------HHHHHHHHHHHhccC-CccccceeeEEEeCC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---------AEFCFNNIVFASQMN-HKNVIRLIGCCLETE  122 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---------~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~  122 (131)
                      ..|...+.+|.|..+.|..++.  .|...++|.+......         ..+-.+|+.||+++. ||+|+.+.+.+..+.
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s   96 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA   96 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence            3466678899999999888887  7788999988643211         144678999999985 999999999999999


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      +.++|+|.|
T Consensus        97 F~FlVFdl~  105 (411)
T KOG0599|consen   97 FVFLVFDLM  105 (411)
T ss_pred             hhhhhhhhc
Confidence            999999875

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.15  E-value=2.2e-05  Score=57.29  Aligned_cols=75  Identities=17%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEECCeeEEEEEEecC--c---h----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           57 YDRQKVITTGLGYELFKGFLHDYPVSIMKFVNS--D---Y----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~--~---~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +...+.||+|+||.||++.+.+..+++|.....  .   .    ....+.+|+.++..++|++++.....+...+..++|
T Consensus       335 ~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv  414 (535)
T PRK09605        335 KIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIV  414 (535)
T ss_pred             cCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEE
Confidence            345688999999999999883333443332111  1   0    124578999999999999988877777666778999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       415 ~E~~  418 (535)
T PRK09605        415 MEYI  418 (535)
T ss_pred             EEec
Confidence            9985

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.14  E-value=1.4e-06  Score=64.93  Aligned_cols=73  Identities=16%  Similarity=0.353  Sum_probs=59.0

Q ss_pred             CCcCCeeeeCCCeE-EEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYE-LFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~-v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |...+.+|.|+-|+ ||.|.+.+..||||.+-....  .-..+|+..|...+ |+||+++++.-....+.||..|.+
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~~--~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC  585 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEFF--DFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELC  585 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCCceehHHHHhhHhH--HHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHh
Confidence            45567789999888 799999889999997754322  23578999998876 999999998888888999998863

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.10  E-value=2.3e-06  Score=58.13  Aligned_cols=77  Identities=13%  Similarity=0.070  Sum_probs=63.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...++||+|.||.|..+.-  .+..+|+|+++..--    ....-+.|.++|...+||-+..+.-.+...+.++.||
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVM  247 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVM  247 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEE
Confidence            4566678999999999998877  788899999875421    1244567888999999999999988888889999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       248 eya  250 (516)
T KOG0690|consen  248 EYA  250 (516)
T ss_pred             EEc
Confidence            985

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.08  E-value=2.6e-06  Score=58.99  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=65.5

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE-C----CeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEeCCee
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL-H----DYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENP  124 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~-~----~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~  124 (131)
                      ......|...+.||+|.|+.||++.. +    ...||+|.+...+. ...+..|+.+|..+. +.|++++.++....+..
T Consensus        32 p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~-p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v  110 (418)
T KOG1167|consen   32 PFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS-PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQV  110 (418)
T ss_pred             hhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC-chHHHHHHHHHHHhccchhhhcchhhhccCCee
Confidence            34455677789999999999999987 4    35789998875432 345789999999886 89999999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      .+|+||+
T Consensus       111 ~ivlp~~  117 (418)
T KOG1167|consen  111 AIVLPYF  117 (418)
T ss_pred             EEEeccc
Confidence            9999985

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.08  E-value=1.5e-06  Score=56.75  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeC-----CeeE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLET-----ENPV  125 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~~~  125 (131)
                      ...|.....||+|+|+.|+.+..  ++..+|+|.+...... .....+|+..-++++|+|++++++....+     ...|
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            34567788999999999998886  7788999998876633 46688999999999999999988766432     3478


Q ss_pred             EEEee
Q 040342          126 LVFEY  130 (131)
Q Consensus       126 lv~E~  130 (131)
                      |++.|
T Consensus       100 ll~Py  104 (302)
T KOG2345|consen  100 LLLPY  104 (302)
T ss_pred             EEeeh
Confidence            87765

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.01  E-value=3.2e-05  Score=46.28  Aligned_cols=71  Identities=10%  Similarity=0.062  Sum_probs=55.4

Q ss_pred             CCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCC--ccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH--KNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...+|.|.++.||++...+..+++|....... ...+..|+.++..++|  ..+.++++.....+..++++||+
T Consensus         3 ~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKDEDYVLKINPSREK-GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             ceecccccccceEEEEecCCeEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEec
Confidence            46789999999999998557789998765433 3457888888888876  47778777776666789999974

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.00  E-value=2.6e-05  Score=50.81  Aligned_cols=62  Identities=10%  Similarity=0.011  Sum_probs=48.9

Q ss_pred             CCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           66 GLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        66 g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.++.||.+..  ++..+++|.+.....    +..+...+....|+|++++++.+...+..++++||+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   67 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE----YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHA   67 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh----hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecC
Confidence            78999999988  778899999876432    223444444556999999999998889999999985

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=97.97  E-value=5.1e-06  Score=55.27  Aligned_cols=72  Identities=6%  Similarity=0.117  Sum_probs=56.3

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...||+|..|.||++..  .|..+|||.+......  ...++..+.++...+ .|.||+.+|++..+...+|-||.|
T Consensus        97 l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelM  173 (391)
T KOG0983|consen   97 LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELM  173 (391)
T ss_pred             HHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHH
Confidence            45689999999999998  6789999999765433  355666777665554 799999999999888777766653

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=97.97  E-value=7.2e-05  Score=47.59  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=49.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-----------------------HHHHHHHHHHHhccCCcc--
Q 040342           57 YDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-----------------------AEFCFNNIVFASQMNHKN--  110 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-----------------------~~~~~~e~~~l~~l~h~n--  110 (131)
                      +...+.||+|+||.||++.. +|..+++|.+......                       ......|..++..+.|.+  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            55678899999999999988 7889999987643211                       012456777787777664  


Q ss_pred             ccceeeEEEeCCeeEEEEeeC
Q 040342          111 VIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       111 iv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +...++    ....++++||+
T Consensus        97 v~~~~~----~~~~~lv~e~~  113 (198)
T cd05144          97 VPKPID----WNRHAVVMEYI  113 (198)
T ss_pred             CCceee----cCCceEEEEEe
Confidence            333332    23458899975

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=97.96  E-value=7.1e-07  Score=59.27  Aligned_cols=72  Identities=14%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             CCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..+|.+...|..|+|.|.|..+.+|.+....-.   ++.|..|...|+...||||++++|.|.++.++.++..||
T Consensus       195 ~tkl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~m  269 (448)
T KOG0195|consen  195 ITKLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYM  269 (448)
T ss_pred             hhhhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeec
Confidence            456788888999999996666777777644322   467889999999999999999999999999999998886

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.86  E-value=0.00014  Score=49.00  Aligned_cols=68  Identities=10%  Similarity=-0.021  Sum_probs=43.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--C---CeeEEEEEEecCchh--H----------HHHHHHHHHHhccCCccccceee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--H---DYPVSIMKFVNSDYA--A----------EFCFNNIVFASQMNHKNVIRLIG  116 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~---~~~vavk~~~~~~~~--~----------~~~~~e~~~l~~l~h~niv~l~g  116 (131)
                      ...|...+.||+|+||.||++..  .   +..+++|........  .          .....+...+..+.|+|++.+++
T Consensus        11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            35677788999999999999988  3   335566653322111  0          01122233455678999999998


Q ss_pred             EEEeC
Q 040342          117 CCLET  121 (131)
Q Consensus       117 ~~~~~  121 (131)
                      ++...
T Consensus        91 ~~~~~   95 (294)
T PHA02882         91 CGSFK   95 (294)
T ss_pred             eeeEe
Confidence            76543

>smart00090 RIO RIO-like kinase

Probab=97.82  E-value=0.00011  Score=48.23  Aligned_cols=72  Identities=13%  Similarity=0.135  Sum_probs=49.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEE--E-CCeeEEEEEEecCchh-------------------------HHHHHHHHHHHhccC
Q 040342           56 NYDRQKVITTGLGYELFKGF--L-HDYPVSIMKFVNSDYA-------------------------AEFCFNNIVFASQMN  107 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~--~-~~~~vavk~~~~~~~~-------------------------~~~~~~e~~~l~~l~  107 (131)
                      .|.....||+|+||.||.+.  . +|..+|+|.+......                         ...+..|+..+..+.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999999999998  3 7889999998753210                         012457888888887


Q ss_pred             Ccc--ccceeeEEEeCCeeEEEEeeC
Q 040342          108 HKN--VIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       108 h~n--iv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +..  +..+++   . ...++|+||+
T Consensus       109 ~~~i~~p~~~~---~-~~~~lV~E~~  130 (237)
T smart00090      109 EAGVPVPKPIA---W-RRNVLVMEFI  130 (237)
T ss_pred             hcCCCCCeeeE---e-cCceEEEEEe
Confidence            533  223332   2 2347999984

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.80  E-value=1.7e-06  Score=57.52  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLE  120 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~  120 (131)
                      +++....||-|+||.||....  +|..++.|.+...-.   +...+-+|+.+|.-.+|.|+++.++....
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQP  123 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQP  123 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCC
Confidence            345678899999999999988  788899887754322   24668899999999999999988776643

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=3e-05  Score=57.12  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=61.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +-|...+.||-|+||.|..+..  ....+|.|.+.....-    ......|-.||...++..||+|+-.+.+.+.+|+||
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVM  708 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM  708 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEE
Confidence            4466678899999999988876  4456788887654322    234667778999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       709 dYI  711 (1034)
T KOG0608|consen  709 DYI  711 (1034)
T ss_pred             ecc
Confidence            995

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=97.71  E-value=1.7e-05  Score=54.59  Aligned_cols=80  Identities=16%  Similarity=0.158  Sum_probs=61.7

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCC--c---c-ccceeeEEEeCCe
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH--K---N-VIRLIGCCLETEN  123 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h--~---n-iv~l~g~~~~~~~  123 (131)
                      ..+..|.....+|+|.||.|-.+..  .+..+|+|+++.-.....+-..|+.++.++.+  |   + .+.+.+++.-.++
T Consensus        86 ~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   86 ILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            3356677788999999999999887  56789999988766555667788889988842  2   2 5566677777889


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .+||+|.|
T Consensus       166 iCivfell  173 (415)
T KOG0671|consen  166 ICIVFELL  173 (415)
T ss_pred             eEEEEecc
Confidence            99999964

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.65  E-value=9.2e-05  Score=48.67  Aligned_cols=77  Identities=13%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCC-ccccceeeEEEeCCeeEEEEe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH-KNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ..+.|.....||+|+||.+|.|..  .|..||+|.=...... ..+.-|..+-..+++ ..+..+.-+..+..+-.||||
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h-pqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH-PQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCC-cchhHHHHHHHHhccCCCCchhhhhccccccceeeee
Confidence            346788889999999999999998  8889999975433222 346677777777774 445555555556667778887


Q ss_pred             e
Q 040342          130 Y  130 (131)
Q Consensus       130 ~  130 (131)
                      +
T Consensus        92 L   92 (341)
T KOG1163|consen   92 L   92 (341)
T ss_pred             c
Confidence            5

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.55  E-value=0.00012  Score=45.98  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             CCeeeeCCCeEEEEEEE-CCeeEEEEEEecC
Q 040342           60 QKVITTGLGYELFKGFL-HDYPVSIMKFVNS   89 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~   89 (131)
                      .+.||+|+||.||.+.. ++..+++|.+...
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~   32 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTG   32 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecC
Confidence            45799999999999988 6889999988754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=97.52  E-value=0.00031  Score=51.78  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=31.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--C----CeeEEEEEEecC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--H----DYPVSIMKFVNS   89 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~----~~~vavk~~~~~   89 (131)
                      ..++|...+.||+|+||.||++..  +    +..+|+|.+...
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~  172 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEY  172 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEeccc
Confidence            456788889999999999999998  4    678999987643

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.50  E-value=4e-07  Score=59.76  Aligned_cols=75  Identities=24%  Similarity=0.365  Sum_probs=54.3

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEec-Cchh--HHHHHHHHHHHhccCCccccceeeEEEeC--------C
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVN-SDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET--------E  122 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~-~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~--------~  122 (131)
                      .|.....+|+|.||.|+++..  .+..|++|..-- ++..  .-.-.+|+.+|..+.|+|++.++..|...        .
T Consensus        18 ~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~   97 (376)
T KOG0669|consen   18 KYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRA   97 (376)
T ss_pred             HHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccc
Confidence            344456799999999999987  566777765422 1111  34568999999999999999999888542        2


Q ss_pred             eeEEEEee
Q 040342          123 NPVLVFEY  130 (131)
Q Consensus       123 ~~~lv~E~  130 (131)
                      ..+|||++
T Consensus        98 t~ylVf~~  105 (376)
T KOG0669|consen   98 TFYLVFDF  105 (376)
T ss_pred             eeeeeHHH
Confidence            47788765

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=97.48  E-value=8.7e-05  Score=47.70  Aligned_cols=83  Identities=5%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHH-hccCCccccceeeEEEeCCe
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFA-SQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l-~~l~h~niv~l~g~~~~~~~  123 (131)
                      .++...+.+.....||+|++|.|-+-.+  +|...|+|.+...-..  ....+.++.+. +....|.+|.++|.......
T Consensus        40 ~~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regd  119 (282)
T KOG0984|consen   40 NFEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGD  119 (282)
T ss_pred             ccccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhcccc
Confidence            3455555666677899999999876666  8899999999754333  35577777654 44568999999998877778


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .+|.||.|
T Consensus       120 vwIcME~M  127 (282)
T KOG0984|consen  120 VWICMELM  127 (282)
T ss_pred             EEEeHHHh
Confidence            89988865

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.47  E-value=0.00099  Score=43.11  Aligned_cols=69  Identities=7%  Similarity=-0.045  Sum_probs=48.5

Q ss_pred             cCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh-----HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           59 RQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA-----AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~-----~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ....|+++.||+|+.....+..++.+.+....-.     ...+.+|+.+|.++. |+++..++++    +..++++||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            3577999999999965545566666655543321     124789999999996 4778888765    3358888874

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=97.45  E-value=0.0001  Score=53.15  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=58.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCC------ccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH------KNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h------~niv~l~g~~~~~~~~~l  126 (131)
                      ..|......|.|-|++|-.|..  .|..||||+|..+..-...=+.|+.+|.+|..      -+.+.++..+...++++|
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLCl  511 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCL  511 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEE
Confidence            3455556679999999999988  67799999999776433445788999988762      256777777777889999


Q ss_pred             EEee
Q 040342          127 VFEY  130 (131)
Q Consensus       127 v~E~  130 (131)
                      |||-
T Consensus       512 VFE~  515 (752)
T KOG0670|consen  512 VFEP  515 (752)
T ss_pred             Eehh
Confidence            9984

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=97.42  E-value=0.0001  Score=52.25  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=61.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +.|..-.+||+|+||.|+-+..  +|..+|.|.+......    ......|-.+|.+++.+-||.+.-.+...+.+++|+
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL  264 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence            4566678899999999998877  7777888777543211    234678888999999999999988898889999998


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ..|
T Consensus       265 tlM  267 (591)
T KOG0986|consen  265 TLM  267 (591)
T ss_pred             Eee
Confidence            866

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.34  E-value=3.9e-05  Score=53.95  Aligned_cols=78  Identities=14%  Similarity=0.120  Sum_probs=56.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hH-HHHHHHHHHHhccC-CccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AA-EFCFNNIVFASQMN-HKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~-~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~l  126 (131)
                      ..+|....+||+|+||.|..+..  ....+|+|.++..--   .+ .--..|-++|.-.. -|-+++++.++..-+.+|.
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF  427 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF  427 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence            34566688999999999999987  445689998875321   11 11234445555443 5678899999988899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ||||+
T Consensus       428 VMEyv  432 (683)
T KOG0696|consen  428 VMEYV  432 (683)
T ss_pred             EEEEe
Confidence            99995

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.33  E-value=0.0013  Score=47.09  Aligned_cols=30  Identities=10%  Similarity=0.092  Sum_probs=26.8

Q ss_pred             CCeeeeCCCeEEEEEEE-CCeeEEEEEEecC
Q 040342           60 QKVITTGLGYELFKGFL-HDYPVSIMKFVNS   89 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~   89 (131)
                      .+.||+|++|+||+|.. +|..||||...+.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~  152 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPG  152 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCC
Confidence            36799999999999999 8999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.32  E-value=0.00034  Score=51.11  Aligned_cols=33  Identities=12%  Similarity=0.095  Sum_probs=28.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-C-CeeEEEEEEecC
Q 040342           56 NYDRQKVITTGLGYELFKGFL-H-DYPVSIMKFVNS   89 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~-~~~vavk~~~~~   89 (131)
                      +|+. +.+|+|++|+||.+.. + |..||||.+.+.
T Consensus       121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~  155 (537)
T PRK04750        121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD  155 (537)
T ss_pred             hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence            3554 6899999999999998 5 899999999764

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.31  E-value=0.00013  Score=53.26  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=58.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +..|.....+|.|+|+.+-.+..  .+...++|.+......   ...|+.++... +|+|++++.+.+..+.+.++|+|+
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~---~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~  397 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADD---NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMEL  397 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccccc---cccccchhhhhcCCCcceeecceecCCceeeeeehh
Confidence            44566677799999999988887  6677899988765322   34566555544 599999999999999999999997


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       398 l  398 (612)
T KOG0603|consen  398 L  398 (612)
T ss_pred             c
Confidence            4

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=97.25  E-value=0.00018  Score=48.08  Aligned_cols=78  Identities=10%  Similarity=0.113  Sum_probs=57.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeE-EEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGC-CLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~-~~~~~~~~lv~E  129 (131)
                      .+.|.+.+.+|+|.||.+..+..  ....+++|..........+|.+|..----|. |.||+.-+.. +...+....++|
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            35677788999999999999988  5677899988876666678888876544454 8888866543 444555566777


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       103 ~a  104 (378)
T KOG1345|consen  103 FA  104 (378)
T ss_pred             cC
Confidence            63

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=97.22  E-value=0.00013  Score=50.93  Aligned_cols=79  Identities=10%  Similarity=0.253  Sum_probs=54.2

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE-CC------eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe-C
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL-HD------YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE-T  121 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~-~~------~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~-~  121 (131)
                      .....+.....+-+|.||.||.|.| ..      ..+-+|.++.....  ...+..|.-.+..+.|+|+.++.+.+.+ .
T Consensus       281 v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~  360 (563)
T KOG1024|consen  281 VQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDY  360 (563)
T ss_pred             hhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeecc
Confidence            3344466677788999999999987 22      12444544433322  2457888888889999999999999876 3


Q ss_pred             CeeEEEEee
Q 040342          122 ENPVLVFEY  130 (131)
Q Consensus       122 ~~~~lv~E~  130 (131)
                      +.++.++.+
T Consensus       361 ~~P~V~y~~  369 (563)
T KOG1024|consen  361 ATPFVLYPA  369 (563)
T ss_pred             CcceEEEec
Confidence            455655544

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.21  E-value=0.00051  Score=47.20  Aligned_cols=75  Identities=19%  Similarity=0.105  Sum_probs=49.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      -+|..++.||+|+||.++.|..  ++..||+|.=...+ ..-.+..|...-+.|. .++|...+-.-..+.+-.||+|+
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS-~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS-EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC-CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            4678899999999999999987  88999999533221 2233555655555554 46666655444445555666664

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.17  E-value=0.0015  Score=44.86  Aligned_cols=75  Identities=9%  Similarity=-0.037  Sum_probs=53.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-CC--eeEEEEEEecCchh-HHHHHHHHHHHhccCC----ccccceeeEE-EeCCeeEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL-HD--YPVSIMKFVNSDYA-AEFCFNNIVFASQMNH----KNVIRLIGCC-LETENPVL  126 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~~--~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h----~niv~l~g~~-~~~~~~~l  126 (131)
                      .|.....||+|+||.||.+.. ..  ..+|+|.-...... ...+..|..++..+..    +++..++... ....+-+|
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            678889999999999999998 32  46778776654322 1257778888877762    4667777666 35667888


Q ss_pred             EEee
Q 040342          127 VFEY  130 (131)
Q Consensus       127 v~E~  130 (131)
                      ||+.
T Consensus        99 VM~l  102 (322)
T KOG1164|consen   99 VMSL  102 (322)
T ss_pred             EEec
Confidence            8875

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.15  E-value=0.00021  Score=49.17  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+|....+||.|+|+.|..+..  +...+|+|.++..-.    .....+.|-.+..+. +||-+|.++.++.....++.|
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffv  329 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFV  329 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEE
Confidence            4577788999999999988877  667789988765322    124556666666655 589999999999888899999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      .||+
T Consensus       330 ieyv  333 (593)
T KOG0695|consen  330 IEYV  333 (593)
T ss_pred             EEEe
Confidence            9985

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=97.04  E-value=0.00012  Score=49.41  Aligned_cols=74  Identities=12%  Similarity=0.236  Sum_probs=54.8

Q ss_pred             hcCCC-cCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEe----CCeeE
Q 040342           54 TKNYD-RQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLE----TENPV  125 (131)
Q Consensus        54 ~~~~~-~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~----~~~~~  125 (131)
                      +++|. ...+||-|..|.|..+..  .+...|+|.+....    ...+|+++.... .|+|||++++++..    ...+.
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~----KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLL  135 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSP----KARREVELHWMASGHPHIVSIIDVYENSYQGRKCLL  135 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCH----HHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeE
Confidence            34444 357899999999999887  77788888776433    356788776555 49999999988753    34677


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|||.|
T Consensus       136 iVmE~m  141 (400)
T KOG0604|consen  136 IVMECM  141 (400)
T ss_pred             eeeecc
Confidence            899876

>cd05151 ChoK Choline Kinase (ChoK)

Probab=96.83  E-value=0.0052  Score=37.77  Aligned_cols=69  Identities=12%  Similarity=0.006  Sum_probs=46.9

Q ss_pred             CeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCcccc-ceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVI-RLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv-~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..++.|.++.+|.....+..+++|...........+..|+.++..+.+.+++ .++...  .+..++|+||+
T Consensus         4 ~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i   73 (170)
T cd05151           4 SPLKGGMTNKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFI   73 (170)
T ss_pred             eecCCcccCceEEEEECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEec
Confidence            4578899999999888777899998765432223456788888877655544 334332  33457899985

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=96.77  E-value=0.018  Score=38.23  Aligned_cols=74  Identities=20%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             CCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCch----hHHHHHHHHHHHhccCCc-cccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHK-NVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~-niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |.....||.|.|+.||.+... ..+++|.+.....    ....+.+|+.++..+.|+ +++.+...+......+++++|+
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR-KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYV   80 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec-cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecC
Confidence            344567899999999999876 5677887765332    245688999999999987 7999999886666678888764

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.57  E-value=0.0098  Score=38.03  Aligned_cols=71  Identities=11%  Similarity=0.116  Sum_probs=50.4

Q ss_pred             CeeeeCCCeEEEEEEE-CCeeEEEEEEecCch--hHHHHHHHHHHHhccCCc--cccceeeEEEeC---CeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL-HDYPVSIMKFVNSDY--AAEFCFNNIVFASQMNHK--NVIRLIGCCLET---ENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~--niv~l~g~~~~~---~~~~lv~E~~  131 (131)
                      ..++.|..+.+|+... +|..+++|.......  ....+..|..++..+.+.  ++.+++......   +..++|+||+
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            4678999999999888 557889998765432  234578888888888753  355666665442   2568999985

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=95.90  E-value=0.089  Score=34.69  Aligned_cols=72  Identities=8%  Similarity=0.048  Sum_probs=48.0

Q ss_pred             CCeee-eCCCeEEEEEEECCeeEEEEEEecCch--------------hHHHHHHHHHHHhccCCccc--cceeeEEEeC-
Q 040342           60 QKVIT-TGLGYELFKGFLHDYPVSIMKFVNSDY--------------AAEFCFNNIVFASQMNHKNV--IRLIGCCLET-  121 (131)
Q Consensus        60 ~~~lg-~g~fg~v~~~~~~~~~vavk~~~~~~~--------------~~~~~~~e~~~l~~l~h~ni--v~l~g~~~~~-  121 (131)
                      ...|| .|+.|++|.....+..+++|.......              ....+.+|+.++..+.|+++  +..++..... 
T Consensus        36 ~~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             CceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            45687 888999998887667788887743210              12346789999999988775  5555554322 


Q ss_pred             C---eeEEEEeeC
Q 040342          122 E---NPVLVFEYV  131 (131)
Q Consensus       122 ~---~~~lv~E~~  131 (131)
                      .   ..++|+||+
T Consensus       116 ~~~~~~~lV~e~l  128 (239)
T PRK01723        116 GLFYRADILIERI  128 (239)
T ss_pred             CcceeeeEEEEec
Confidence            2   234888874

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.62  E-value=0.039  Score=34.98  Aligned_cols=54  Identities=9%  Similarity=-0.008  Sum_probs=41.7

Q ss_pred             cCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccc
Q 040342           59 RQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIR  113 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~  113 (131)
                      ....|++|.++.||.+.+.|..+++|.-...++ ...+..|+.+|..+...++.+
T Consensus        26 v~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~-r~~l~kEakiLeil~g~~~~p   79 (201)
T COG2112          26 VEKELAKGTTSVVYLGEWRGGEVALKVRRRDSP-RRNLEKEAKILEILAGEGVTP   79 (201)
T ss_pred             hhhhhhcccccEEEEeeccCceEEEEEecCCcc-hhhHHHHHHHHHHhhhcCCCc
Confidence            356799999999999999777888887665432 356889999998887666554

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=95.61  E-value=0.00087  Score=48.48  Aligned_cols=76  Identities=9%  Similarity=0.065  Sum_probs=57.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEECCe--eEEEEEEecCc----hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFLHDY--PVSIMKFVNSD----YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~~~~--~vavk~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .++.....||-|+||.|-....++.  .+|+|+++...    .+......|-.+|...+.+.||+++--+......||+|
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            4455567899999999988877333  36777776432    12345677888999999999999999998888899888


Q ss_pred             ee
Q 040342          129 EY  130 (131)
Q Consensus       129 E~  130 (131)
                      |-
T Consensus       500 Ea  501 (732)
T KOG0614|consen  500 EA  501 (732)
T ss_pred             Hh
Confidence            73

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=95.33  E-value=0.005  Score=42.09  Aligned_cols=74  Identities=26%  Similarity=0.366  Sum_probs=50.0

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecC---chhHHHHHHHHHHHhccCCccccceeeEEEeCC------eeE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNS---DYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE------NPV  125 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------~~~  125 (131)
                      |.....+|.|.= .|-.+..  .+.+|++|.....   ........+|..++..+.|+|+++++.++....      ..|
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y   97 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVY   97 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHH
Confidence            333455666655 3444444  5677888876532   122355678999999999999999999987543      567


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+|||
T Consensus        98 ~v~e~m  103 (369)
T KOG0665|consen   98 LVMELM  103 (369)
T ss_pred             HHHHhh
Confidence            888876

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=95.16  E-value=0.014  Score=45.55  Aligned_cols=38  Identities=11%  Similarity=-0.023  Sum_probs=31.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCch
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDY   91 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~   91 (131)
                      ...|.+.+.+|+|+||.||.|.. +|..+|+|.-.+...
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~  735 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP  735 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc
Confidence            34456677899999999999999 888999998776543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.10  E-value=0.044  Score=41.07  Aligned_cols=54  Identities=20%  Similarity=0.256  Sum_probs=41.8

Q ss_pred             CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           77 HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        77 ~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .+.++.+...+..... .....+.+.-|+.++||||++++.........|||+|-
T Consensus        36 ~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTEr   90 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTER   90 (690)
T ss_pred             cCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeec
Confidence            5667777777654432 23456667789999999999999999888899999984

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=94.51  E-value=0.076  Score=39.07  Aligned_cols=62  Identities=15%  Similarity=0.157  Sum_probs=45.7

Q ss_pred             eEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEE----eCCeeEEEEee
Q 040342           69 YELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCL----ETENPVLVFEY  130 (131)
Q Consensus        69 g~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~----~~~~~~lv~E~  130 (131)
                      .+.|++..  +|..+++|+++..... ......-+..+.++.|.|+|++..++.    .+..+.+||+|
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDY  358 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDY  358 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEec
Confidence            45688877  7888999999654332 233445567888999999999998876    24577888887

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=93.92  E-value=0.025  Score=33.23  Aligned_cols=31  Identities=6%  Similarity=-0.039  Sum_probs=27.2

Q ss_pred             CCeeeeCCCeEEEEEEE-CCeeEEEEEEecCc
Q 040342           60 QKVITTGLGYELFKGFL-HDYPVSIMKFVNSD   90 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~   90 (131)
                      ...|++++.|+||+|.+ +|..|+||...+.-
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i   47 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPGI   47 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchHH
Confidence            36799999999999999 89999999988754

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>PRK10593 hypothetical protein; Provisional

Probab=93.50  E-value=0.57  Score=31.99  Aligned_cols=72  Identities=11%  Similarity=-0.008  Sum_probs=48.6

Q ss_pred             cCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCC---ccccceeeEEEe---CCeeEEEEeeC
Q 040342           59 RQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH---KNVIRLIGCCLE---TENPVLVFEYV  131 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h---~niv~l~g~~~~---~~~~~lv~E~~  131 (131)
                      ....||.|..+.||.....+..+.+|..+. ......+..|...+..+..   ..+.++++.+..   .+..+||||++
T Consensus        18 ~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~-~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i   95 (297)
T PRK10593         18 RVECISEQPYAALWALYDSQGNPMPLMARS-FSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERL   95 (297)
T ss_pred             eeeecCCccceeEEEEEcCCCCEEEEEecc-cccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEecc
Confidence            356799999999999876333456666433 1123468889888887753   356677776643   35689999974

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=92.08  E-value=0.035  Score=40.27  Aligned_cols=70  Identities=7%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE  120 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~  120 (131)
                      ....+++....++|.|+||.|+.+..  ++...+||.|......  .....+++..+..+.|++++.+.-.+..
T Consensus        45 sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   45 SREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hhhhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceec
Confidence            34567888899999999999998887  4457888888654433  3557778888888999999988766654

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=91.39  E-value=1.7  Score=29.65  Aligned_cols=71  Identities=8%  Similarity=0.010  Sum_probs=44.9

Q ss_pred             cCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccC---CccccceeeEEEeCCeeEEEEeeC
Q 040342           59 RQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN---HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ....++-|....+|....++..+.+|.-..  .....|..|..-|..+.   --.+.++++.....+..+|++||+
T Consensus        21 ~~~~v~GG~i~~a~~~~~~~~~~FvK~~~~--~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l   94 (288)
T PF03881_consen   21 SIEPVSGGDINEAYRLDTDGGSYFVKVNSE--SGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFL   94 (288)
T ss_dssp             EEEEE--SSSSEEEEEETTS-EEEEEEEEG--GGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE--
T ss_pred             eeEecCCCChhheEEEECCCccEEEEecCh--hhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEee
Confidence            346688888888888766777888987662  22355778887777774   334667777776666779999984

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=89.71  E-value=1.5  Score=28.49  Aligned_cols=65  Identities=11%  Similarity=0.067  Sum_probs=46.9

Q ss_pred             cCCCcCCeeeeCCC-eEEEEEEECCeeEEEEEEec---Cc-------------------hhHHHHHHHHHHHhccC---C
Q 040342           55 KNYDRQKVITTGLG-YELFKGFLHDYPVSIMKFVN---SD-------------------YAAEFCFNNIVFASQMN---H  108 (131)
Q Consensus        55 ~~~~~~~~lg~g~f-g~v~~~~~~~~~vavk~~~~---~~-------------------~~~~~~~~e~~~l~~l~---h  108 (131)
                      .+++..+.||.|.. |.||+..+.|..+|+|....   ..                   .....|..|++...++.   +
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~  116 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGR  116 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccc
Confidence            56677889999999 99999999888999998221   00                   00135778888777765   3


Q ss_pred             ccc--cceeeEEE
Q 040342          109 KNV--IRLIGCCL  119 (131)
Q Consensus       109 ~ni--v~l~g~~~  119 (131)
                      .++  ++++|+..
T Consensus       117 e~~~Avkc~Gyl~  129 (207)
T PF13095_consen  117 EGLWAVKCHGYLL  129 (207)
T ss_pred             cCceEEEeeEEEE
Confidence            345  78888764

>PLN02876 acyl-CoA dehydrogenase

Probab=89.62  E-value=2.4  Score=33.30  Aligned_cols=72  Identities=13%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             CCeeeeCCCeEEEEEEE-CC---eeEEEEEEecCch--hHHHHHHHHHHHhccC-Cccc--cceeeEEEeC---CeeEEE
Q 040342           60 QKVITTGLGYELFKGFL-HD---YPVSIMKFVNSDY--AAEFCFNNIVFASQMN-HKNV--IRLIGCCLET---ENPVLV  127 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~~---~~vavk~~~~~~~--~~~~~~~e~~~l~~l~-h~ni--v~l~g~~~~~---~~~~lv  127 (131)
                      ...++.|..+.+|.... .+   ..++++.......  ....+.+|..++..+. |.++  ..++..|...   +..++|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            45678888888998766 32   3566665543221  2345789999998885 5554  6666766543   367899


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      |||+
T Consensus       123 ME~v  126 (822)
T PLN02876        123 MEYL  126 (822)
T ss_pred             EEec
Confidence            9985

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=89.59  E-value=1.6  Score=28.51  Aligned_cols=69  Identities=7%  Similarity=-0.063  Sum_probs=45.4

Q ss_pred             CCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCcc--ccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKN--VIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...+|.|..+.+|+.  .+..+.+|...... ......+|..++..+....  +...++....++...++||++
T Consensus         6 ~~~i~~G~t~~~y~~--~~~~~VlR~~~~~~-~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i   76 (226)
T TIGR02172         6 WTQTGEGGNGESYTH--KTGKWMLKLYNPGF-DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELI   76 (226)
T ss_pred             heeecCCCCcceeEe--cCCCEEEEeCCCCC-CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeec
Confidence            467899999999974  23346677665432 2344678888888776433  345566665566667888874

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=87.85  E-value=5.2  Score=25.47  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             CeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCc--cccceeeEEEe---CCeeEEEEee
Q 040342           61 KVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHK--NVIRLIGCCLE---TENPVLVFEY  130 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~--niv~l~g~~~~---~~~~~lv~E~  130 (131)
                      +.++.|..+.+|.....+..+++|..... .....+..|..++..+...  .+..++.....   ....++++++
T Consensus         3 ~~l~~G~~n~~~~v~~~~~~~vlK~~~~~-~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~   76 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDDGRYVLKFYRPP-DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEY   76 (239)
T ss_dssp             EEEEESSSSEEEEEEETTSEEEEEEESSH-HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEE
T ss_pred             ccCCCCCeeeEEEEEECCcEEEEEEeCCC-CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEE
Confidence            56899999999999984468899987655 2335567777777766533  34455553322   2345777776

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=86.65  E-value=6.5  Score=25.35  Aligned_cols=72  Identities=14%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             CcCCeeeeCCCeEEEEEEECCeeEEEEEEecCc-----------------hhHHHHHHHHHHHhcc------CCccccce
Q 040342           58 DRQKVITTGLGYELFKGFLHDYPVSIMKFVNSD-----------------YAAEFCFNNIVFASQM------NHKNVIRL  114 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~-----------------~~~~~~~~e~~~l~~l------~h~niv~l  114 (131)
                      +....||.|+.-.+|.... ....+||......                 .......+|+.-...+      .+..+..+
T Consensus         4 ~~~~~i~~G~~R~cy~HP~-dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    4 SESDLIAQGGERDCYQHPD-DPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CCCcccccCCCceEEECCC-CCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            3456789999988886553 2346777776554                 1123455555433333      37788999


Q ss_pred             eeEEEeCCeeEEEEee
Q 040342          115 IGCCLETENPVLVFEY  130 (131)
Q Consensus       115 ~g~~~~~~~~~lv~E~  130 (131)
                      +|....+.-+.+|+|.
T Consensus        83 ~G~veT~~G~Glv~e~   98 (199)
T PF10707_consen   83 YGFVETNLGLGLVVEL   98 (199)
T ss_pred             eEEEecCCceEEEEEE
Confidence            9999888778888875

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=86.57  E-value=0.88  Score=33.71  Aligned_cols=30  Identities=10%  Similarity=0.005  Sum_probs=27.2

Q ss_pred             CeeeeCCCeEEEEEEE-CCeeEEEEEEecCc
Q 040342           61 KVITTGLGYELFKGFL-HDYPVSIMKFVNSD   90 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~   90 (131)
                      +.++.++-|+||+|.+ +|..||||...++-
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi  161 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGI  161 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCCh
Confidence            6789999999999999 89999999998764

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=85.33  E-value=4.9  Score=26.27  Aligned_cols=67  Identities=9%  Similarity=-0.067  Sum_probs=40.3

Q ss_pred             eeeCCC-eEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGLG-YELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~f-g~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |..|.. +.||+....+..+.+|......  ...+.+|+.++..+. +..+.++++....++..++|+|++
T Consensus         6 ~~~g~~~~~v~~~~~~~~~~~vk~~~~~~--~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i   74 (244)
T cd05150           6 VTEGQSGATVYRLDGKNPGLYLKIAPSGP--TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAV   74 (244)
T ss_pred             cCCCCCcCeEEEEcCCCCcEEEEecCCCc--ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEee
Confidence            334444 5677776544567777765432  223567877777664 333446666655555678899874

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=84.07  E-value=9  Score=24.70  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=42.4

Q ss_pred             CeeeeCCCeEEEEEEE-C-------CeeEEEEEEecCch----------------------h-H----HHHHHHHHHHhc
Q 040342           61 KVITTGLGYELFKGFL-H-------DYPVSIMKFVNSDY----------------------A-A----EFCFNNIVFASQ  105 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~-~-------~~~vavk~~~~~~~----------------------~-~----~~~~~e~~~l~~  105 (131)
                      ..||.|.=+.||.|.. .       +..+|+|.......                      . .    ....+|...|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            4688899999999876 3       25789987653210                      0 0    112378888887


Q ss_pred             cCC--ccccceeeEEEeCCeeEEEEeeC
Q 040342          106 MNH--KNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       106 l~h--~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +..  -++..+++.    ..-+|||||+
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~I  106 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFI  106 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEc
Confidence            763  344455543    3457889875

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=82.08  E-value=8.4  Score=26.50  Aligned_cols=69  Identities=12%  Similarity=0.091  Sum_probs=45.9

Q ss_pred             cCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-----------------------HHHHHHHHHHHhccCCc--ccc
Q 040342           59 RQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-----------------------AEFCFNNIVFASQMNHK--NVI  112 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-----------------------~~~~~~e~~~l~~l~h~--niv  112 (131)
                      .++.||.|.=+.||.+.. .|..+++|.-.....+                       .....+|..+|..+...  .+.
T Consensus        95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP  174 (304)
T COG0478          95 IGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVP  174 (304)
T ss_pred             hccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCC
Confidence            468899999999999999 7888999865432110                       12356788888887643  444


Q ss_pred             ceeeEEEeCCeeEEEEeeC
Q 040342          113 RLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       113 ~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..++.    +.-.+||||+
T Consensus       175 ~P~~~----nRHaVvMe~i  189 (304)
T COG0478         175 KPIAW----NRHAVVMEYI  189 (304)
T ss_pred             Ccccc----ccceeeeehc
Confidence            44432    3446777763

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=81.06  E-value=2.2  Score=31.86  Aligned_cols=30  Identities=10%  Similarity=0.034  Sum_probs=26.6

Q ss_pred             CCeeeeCCCeEEEEEEE-CCeeEEEEEEecC
Q 040342           60 QKVITTGLGYELFKGFL-HDYPVSIMKFVNS   89 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~   89 (131)
                      .+.|+..+.|+|+++.. +|..||||..++.
T Consensus       166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~  196 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPG  196 (538)
T ss_pred             cchhhhcchhheEEEEecCCCEEEEEecCcC
Confidence            36799999999999999 9999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-11
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	7e-11
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-09
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-08
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	8e-06
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	8e-06
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-05
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-05
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	3e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	4e-05
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-05
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	6e-05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	8e-05
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	8e-05
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-05
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-04
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-04
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-04
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-04
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-04
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-04
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	5e-04
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-04
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-04
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-04
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	9e-04
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	9e-04

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 15/102 (14%)

Query: 43  RCFHENELKIATKNYDRQKVITT-------GLGYELFKGFLHDYPVSIMKFVNSDYAA-- 93
             F   ELK  T N+D + +          G G  ++KG++++  V++ K          
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGV-VYKGYVNNTTVAVKKLAAMVDITTE 71

Query: 94  ----EFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
               +F    I   ++  H+N++ L+G   + ++  LV+ Y+
Sbjct: 72  ELKQQF-DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM 112

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 43  RCFHENELKIATKNYDRQKVITTGLGY-ELFKGFLHD-YPVSIMKFVNSDY--AAEFCFN 98
                 +L+ AT N+D + +I  G  + +++KG L D   V++ +          EF   
Sbjct: 27  YRVPLVDLEEATNNFDHKFLIGHG-VFGKVYKGVLRDGAKVALKRRTPESSQGIEEF-ET 84

Query: 99  NIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
            I   S   H +++ LIG C E    +L+++Y+
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDERNEMILIYKYM 117

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 49  ELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH 108
            L   +      +V   G    ++K  L +  V++  F   D  +      +     M H
Sbjct: 18  NLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKH 77

Query: 109 KNVIRLIGCCLETENPV----LVFEYV 131
           +N+++ IG      +      L+  + 
Sbjct: 78  ENILQFIGAEKRGTSVDVDLWLITAFH 104

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 42  IRCFHENELKIATKNYDRQKVITTGLGY-ELFKGFLHD-YPVSIMKFVNSDYAA---EFC 96
           ++ F   EL++A+ N+  + ++  G G+ +++KG L D   V++ +           +F 
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRG-GFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQ 75

Query: 97  FNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
              +   S   H+N++RL G C+     +LV+ Y+
Sbjct: 76  -TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYM 109

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 45  FHENELKIATKNYDRQKVITTGLGY-ELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFA 103
              +E  +   N    ++I  G  Y  ++KG L + PV++  F  ++        NI   
Sbjct: 3   AAASEPSLDLDNLKLLELIGRG-RYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRV 61

Query: 104 SQMNHKNVIRLIGCCLETENPV-----LVFEY 130
             M H N+ R I               LV EY
Sbjct: 62  PLMEHDNIARFIVGDERVTADGRMEYLLVMEY 93

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 104 SQMNHKNVIRLIGCCLETENPVL-VFEY 130
              +H NV+ L+G CL +E   L V  Y
Sbjct: 145 KDFSHPNVLSLLGICLRSEGSPLVVLPY 172

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
           ++ ++ N+++L+G C   +   L+FEY+
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPMCLLFEYM 132

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 104 SQMNHKNVIRLIGCCLETENPVL-VFEY 130
              +H NV+ L+G CL +E   L V  Y
Sbjct: 81  KDFSHPNVLSLLGICLRSEGSPLVVLPY 108

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
            Q+NH +VI+L G C +    +L+ EY 
Sbjct: 81  KQVNHPHVIKLYGACSQDGPLLLIVEYA 108

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
           S+ NH+N++R IG  L++    ++ E +
Sbjct: 129 SKFNHQNIVRCIGVSLQSLPRFILLELM 156

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEY 130
            + N  +V+RL+G   + +  +++ E 
Sbjct: 83  KEFNCHHVVRLLGVVSQGQPTLVIMEL 109

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
           S+ NH+N++R IG  L++    ++ E +
Sbjct: 88  SKFNHQNIVRCIGVSLQSLPRFILMELM 115

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
           + + H++++R  G C E    ++VFEY+
Sbjct: 98  TMLQHQHIVRFFGVCTEGRPLLMVFEYM 125

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 70  ELFKGFLHDYPVSIMKFVNSDYAA----EFCFNNIVFASQMNHKNVIRLIGCCLETENPV 125
            + +   H   V++   +  D+ A    EF    +    ++ H N++  +G   +  N  
Sbjct: 52  TVHRAEWHGSDVAVKILMEQDFHAERVNEFL-REVAIMKRLRHPNIVLFMGAVTQPPNLS 110

Query: 126 LVFEY 130
           +V EY
Sbjct: 111 IVTEY 115

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
            HKN+I L+G C +     ++ EY 
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYA 169

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
            HKN+I L+G C +     ++ EY 
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYA 123

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 107 NHKNVIRLIGCCLETENPV-LVFEYV 131
           +H NV+ L+G C +   P+ ++ E+ 
Sbjct: 89  HHLNVVNLLGACTKPGGPLMVIVEFC 114

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 70  ELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV---- 125
           E+++G      V++  F + D  + F    +     + H+N++  I   + + +      
Sbjct: 23  EVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82

Query: 126 LVFEY 130
           L+  Y
Sbjct: 83  LITHY 87

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 7/27 (25%), Positives = 18/27 (66%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEY 130
           + + H+++++  G C + +  ++VFEY
Sbjct: 72  TNLQHEHIVKFYGVCGDGDPLIMVFEY 98

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
           +H N+I L+G C       L  EY 
Sbjct: 84  HHPNIINLLGACEHRGYLYLAIEYA 108

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 70  ELFKGFLHDYPVSIMKFVNSDYAAEFC--FNNIVFA-SQMNHKNVIRLIGCCLE--TENP 124
           EL+KG      + +      D++      FN         +H NV+ ++G C      +P
Sbjct: 25  ELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHP 84

Query: 125 VLVFEY 130
            L+  +
Sbjct: 85  TLITHW 90

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEY 130
           +++ H NV+ L+G   + +   ++F Y
Sbjct: 67  ARLQHPNVVCLLGVVTKDQPLSMIFSY 93

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 70  ELFKGFLHDYPVSIMKFVN------SDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETEN 123
           ++++ F     V++    +      S              + + H N+I L G CL+  N
Sbjct: 22  KVYRAFWIGDEVAVKAARHDPDEDISQTIENVR-QEAKLFAMLKHPNIIALRGVCLKEPN 80

Query: 124 PVLVFEY 130
             LV E+
Sbjct: 81  LCLVMEF 87

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 70  ELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE 129
            + K       V+I +  +      F    +   S++NH N+++L G C       LV E
Sbjct: 23  VVCKAKWRAKDVAIKQIESESERKAFI-VELRQLSRVNHPNIVKLYGAC--LNPVCLVME 79

Query: 130 YV 131
           Y 
Sbjct: 80  YA 81

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 70  ELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV---- 125
           E+++G      V++  F + +  + F    I     + H+N++  I    +         
Sbjct: 57  EVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 116

Query: 126 LVFEY 130
           LV +Y
Sbjct: 117 LVSDY 121

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
           +H+N++ L+G C  +    L+FEY 
Sbjct: 107 SHENIVNLLGACTLSGPIYLIFEYC 131

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 70  ELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV---- 125
           E++ G      V++  F  ++ A+ F    I     M H+N++  I   ++         
Sbjct: 52  EVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLY 111

Query: 126 LVFEY 130
           L+ +Y
Sbjct: 112 LITDY 116

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
            HKN+I L+G C +     ++ EY 
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYA 157

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 104 SQMNHKNVIRLIGCCLETENPVL-VFEY 130
             +NH NV+ LIG  L  E     +  Y
Sbjct: 77  RGLNHPNVLALIGIMLPPEGLPHVLLPY 104

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 14/69 (20%)

Query: 70  ELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFAS------QMNHKNVIRLIGCCLETEN 123
           ++  G      V++ K + +D  A+       F +      Q+ H N+++L+G  +E + 
Sbjct: 208 DVMLGDYRGNKVAV-KCIKNDATAQ------AFLAEASVMTQLRHSNLVQLLGVIVEEKG 260

Query: 124 PV-LVFEYV 131
            + +V EY+
Sbjct: 261 GLYIVTEYM 269

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
            H+N++ L+G C      +++ EY 
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYC 132

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
           NH N++ L+G C      +++ EY 
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYC 109

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 5/32 (15%)

Query: 104 SQMNHKNVIRLIGCCLETE-----NPVLVFEY 130
              +H NVIRL+G C+E        P+++  +
Sbjct: 91  KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPF 122

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 105 QMNHKNVIRLIGCCLET-ENPV-LVFEYV 131
            ++   +++  G         + LV EY+
Sbjct: 80  ALHSDFIVKYRGVSYGPGRQSLRLVMEYL 108

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 105 QMNHKNVIRLIGCCLETENPV-LVFEYV 131
            +++ +V RL+G C    + V L+ + +
Sbjct: 73  SVDNPHVCRLLGIC--LTSTVQLITQLM 98

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 6/34 (17%)

Query: 104 SQMNHKNVIRLIGCCLETE------NPVLVFEYV 131
            + +H +V +L+G  L +        P+++  ++
Sbjct: 80  KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFM 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.71
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.71
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.69
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.66
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.65
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.65
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.64
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.63
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.63
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.6
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.6
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.59
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.59
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.55
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.54
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.52
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.51
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.48
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.44
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.44
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.42
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.42
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.42
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.42
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.41
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.41
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.41
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.41
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.4
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.4
3uqc_A	286	Probable conserved transmembrane protein; structur	99.39
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.39
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.39
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.38
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.38
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.38
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.38
3niz_A	311	Rhodanese family protein; structural genomics, str	99.37
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.37
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.36
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.36
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.36
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.36
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.35
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.35
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.35
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.35
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.35
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.35
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.35
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.35
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.34
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.34
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.34
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.34
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.34
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.34
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.34
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.33
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.33
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.33
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.32
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.32
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.32
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.32
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.32
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.32
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.32
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.31
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.31
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.31
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.31
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.31
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.31
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.31
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.31
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.31
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.3
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.3
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.3
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.3
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.3
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.3
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.29
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.29
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.29
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.29
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.29
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.29
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.28
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.28
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.28
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.28
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.28
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.28
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.27
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.27
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.27
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.27
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.27
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.27
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.26
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.26
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.26
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.26
3bhy_A	283	Death-associated protein kinase 3; death associate	99.26
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.26
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.26
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.26
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.26
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.26
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.25
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.25
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.25
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.25
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.25
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.25
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.24
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.24
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.24
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.24
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.24
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.24
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.24
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.24
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.24
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.24
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.23
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.23
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.23
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.23
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.23
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.23
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.23
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.23
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.23
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.22
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.22
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.22
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.22
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.22
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.22
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.22
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.22
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.22
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.22
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.22
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.22
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.22
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.21
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.21
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.21
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.21
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.21
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.21
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.2
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.2
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.2
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.2
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.2
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.19
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.19
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.19
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.19
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.19
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.19
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.19
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.18
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.18
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.18
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.18
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.18
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.17
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.17
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.17
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.17
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.17
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.17
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.17
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.17
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.17
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.17
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.17
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.17
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.17
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.17
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.15
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.15
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.15
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.15
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.15
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.15
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.14
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.14
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.14
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.14
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.13
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.12
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.11
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.11
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.11
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.1
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.1
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.1
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.09
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.08
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.07
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.06
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.06
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.05
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.04
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.04
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.04
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.04
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.04
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.04
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.03
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.03
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.03
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.03
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.02
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.01
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.98
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.98
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.97
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.97
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.96
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.95
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.94
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.92
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.9
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.89
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.89
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.88
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.87
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.84
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.78
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.78
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.75
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.46
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.18
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.95
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	97.93
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.38
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.87
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.54
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	95.19
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	95.0
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	94.12
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	92.02
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	91.37
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	90.57
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	89.44
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	88.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.41

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.71  E-value=2.8e-17  Score=109.61  Aligned_cols=77  Identities=16%  Similarity=0.334  Sum_probs=64.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ++|...+.||+|+||.||+|.+       ++..||+|.++..... ...|.+|+.+|.+++|||||+++|+|..++..+|
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            4566678899999999999986       2567999999865544 4679999999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |||||
T Consensus        93 V~Ey~   97 (299)
T 4asz_A           93 VFEYM   97 (299)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99996

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.71  E-value=4.8e-17  Score=109.81  Aligned_cols=77  Identities=16%  Similarity=0.283  Sum_probs=66.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++...+.||+|+||.||+|.+       ++..||||.++..... ...|.+|+.+|.+++|||||+++|+|..++..+|
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            3455567899999999999986       2568999999865544 4679999999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |||||
T Consensus       121 V~Ey~  125 (329)
T 4aoj_A          121 VFEYM  125 (329)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99996

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.69  E-value=6.9e-17  Score=108.16  Aligned_cols=75  Identities=17%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +...+.||+|+||.||+|.+       .+..||||.++.....  ...|.+|+.++.+++|||||+++|+|..++..+||
T Consensus        28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV  107 (308)
T 4gt4_A           28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI  107 (308)
T ss_dssp             EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEE
Confidence            34467899999999999986       2467999999754332  46799999999999999999999999998999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +|||
T Consensus       108 ~Ey~  111 (308)
T 4gt4_A          108 FSYC  111 (308)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9996

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.66  E-value=2.9e-16  Score=106.47  Aligned_cols=77  Identities=19%  Similarity=0.240  Sum_probs=67.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..|...+.||+|+||.||++..  +|..||+|.+...... ...+.+|+.+|..++|+|||++++++..++.+||||||+
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            4477778899999999999998  7889999999754433 356889999999999999999999999999999999996

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.65  E-value=3.6e-16  Score=106.13  Aligned_cols=77  Identities=17%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ++|...+.||+|+||.||++..  ++..||+|.+......   ...+.+|+.+|..++|||||++++++..++..|||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            4677788999999999999998  7889999999754322   3568999999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       104 y~  105 (350)
T 4b9d_A          104 YC  105 (350)
T ss_dssp             CC
T ss_pred             CC
Confidence            96

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.65  E-value=6e-16  Score=107.32  Aligned_cols=77  Identities=19%  Similarity=0.240  Sum_probs=68.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..|.....||+|+||.||++..  +|..||+|.+...... ...+.+|+.+|..++|+|||++++++...+.+|||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            4577788999999999999998  7889999999765433 456889999999999999999999999999999999996

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.64  E-value=8.2e-16  Score=102.74  Aligned_cols=76  Identities=20%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCC----eeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE----NPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~----~~~lv~E~~  131 (131)
                      .+...+.||+|+||.||+|.+.|..||||.++........+..|+..+..++|+||++++|++..++    .++||||||
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~   83 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH   83 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred             EEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCC
Confidence            3556788999999999999998899999999765433333345566667889999999999997643    579999996

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.63  E-value=1e-15  Score=102.39  Aligned_cols=77  Identities=10%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  ++..+|+|.+......    ...+.+|+.+|..++||||+++++++...+..||||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            4688889999999999999998  7889999999754321    356899999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       112 Ey~  114 (311)
T 4aw0_A          112 SYA  114 (311)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            996

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.63  E-value=1.4e-15  Score=100.36  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  ++..+|+|.+......    ...+.+|+.++..++||||+++++++...+..+|||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5788899999999999999998  7889999999754322    356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        93 Ey~   95 (275)
T 3hyh_A           93 EYA   95 (275)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            996

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.60  E-value=2.7e-15  Score=100.09  Aligned_cols=76  Identities=12%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC---------
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE---------  122 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~---------  122 (131)
                      +|...+.||+|+||.||++..  ++..+|+|.+......  ...+.+|+.+|..++|||||++++++...+         
T Consensus         6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~   85 (299)
T 4g31_A            6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSS   85 (299)
T ss_dssp             HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC---------
T ss_pred             hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccC
Confidence            467788999999999999998  7889999999754433  366899999999999999999999986533         


Q ss_pred             ---eeEEEEeeC
Q 040342          123 ---NPVLVFEYV  131 (131)
Q Consensus       123 ---~~~lv~E~~  131 (131)
                         .++|||||+
T Consensus        86 ~~~~l~ivmE~~   97 (299)
T 4g31_A           86 PKVYLYIQMQLC   97 (299)
T ss_dssp             -CEEEEEEEECC
T ss_pred             CCcEEEEEEecC
Confidence               378999986

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.60  E-value=1.3e-15  Score=101.83  Aligned_cols=78  Identities=18%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +..+++...+.||+|+||.||+|.+.+ .+|||.++.....   ...|.+|+.+|.+++|||||+++|++.. +..+|||
T Consensus        33 i~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm  110 (307)
T 3omv_A           33 IEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT  110 (307)
T ss_dssp             CCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             EcHHHeEEeeEEeeCCCcEEEEEEECC-cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence            345667778899999999999998744 4899998754322   3679999999999999999999998864 5689999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      |||
T Consensus       111 Ey~  113 (307)
T 3omv_A          111 QWC  113 (307)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            996

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.59  E-value=3e-15  Score=101.93  Aligned_cols=87  Identities=11%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             ecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhccCC-ccccce
Q 040342           45 FHENELKIATKNYDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNH-KNVIRL  114 (131)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h-~niv~l  114 (131)
                      +...++++..++|...+.||+|+||.||+|.+ .      +..||+|.+......  ...+.+|+.+|..+.| +|||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            34456777888899999999999999999987 2      257999999765433  3679999999999975 899999


Q ss_pred             eeEEEe-CCeeEEEEeeC
Q 040342          115 IGCCLE-TENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~-~~~~~lv~E~~  131 (131)
                      +|+|.. ++.++||+|||
T Consensus       134 ~g~~~~~~~~~~iV~Ey~  151 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFC  151 (353)
T ss_dssp             EEEECCTTSCCEEEEECC
T ss_pred             EEEEEecCCEEEEEEEcC
Confidence            999976 45789999996

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.59  E-value=6.2e-15  Score=97.91  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=61.1

Q ss_pred             cCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe----CCeeEEEEe
Q 040342           59 RQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE----TENPVLVFE  129 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~----~~~~~lv~E  129 (131)
                      ....||+|+||.||+|..  .+..||+|.+......   ...+.+|+.+|..++|||||++++++..    ....+||||
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmE  109 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE  109 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEe
Confidence            346799999999999998  6788999999754322   3568999999999999999999999864    346899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      ||
T Consensus       110 y~  111 (290)
T 3fpq_A          110 LM  111 (290)
T ss_dssp             CC
T ss_pred             CC
Confidence            96

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.55  E-value=8.4e-15  Score=99.00  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|...+.||+|+||.||++..  +|..||+|.++....    ..+|+.++..++|||||++++++..++.++|||||+
T Consensus        59 ~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  132 (336)
T 4g3f_A           59 WMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL  132 (336)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             heEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence            455567899999999999998  788999999975432    247999999999999999999999999999999996

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.54  E-value=2e-14  Score=99.27  Aligned_cols=77  Identities=16%  Similarity=0.156  Sum_probs=64.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe------CCe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE------TEN  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~------~~~  123 (131)
                      +.|...+.||+|+||.||++..  +|..||+|.+......   ...+.+|+.+|..++|+||+++++++..      ...
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            3577788999999999999998  7889999999754322   3568899999999999999999998753      257


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      +|||||||
T Consensus       134 ~~ivmE~~  141 (398)
T 4b99_A          134 VYVVLDLM  141 (398)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            89999996

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.52  E-value=5.2e-14  Score=101.16  Aligned_cols=77  Identities=14%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||++..  +|..+|+|.+...... ...+.+|+.+|..++|+||+++++++.....++||||||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence            5677788999999999999998  7889999999765444 466889999999999999999999999999999999996

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.51  E-value=7.1e-15  Score=98.18  Aligned_cols=77  Identities=10%  Similarity=0.070  Sum_probs=60.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ++|...+.||+|+||.||.+..     .+..+|+|.+......   ...+.+|+.+|..++||||+++++++..++..+|
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            4577889999999999999976     3567999999754322   2457889999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ||||+
T Consensus       104 vmEy~  108 (304)
T 3ubd_A          104 ILDFL  108 (304)
T ss_dssp             EECCC
T ss_pred             EEEcC
Confidence            99996

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.48  E-value=1.2e-13  Score=92.54  Aligned_cols=92  Identities=22%  Similarity=0.423  Sum_probs=79.2

Q ss_pred             CCcceecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceee
Q 040342           40 NPIRCFHENELKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIG  116 (131)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g  116 (131)
                      .....++..++....++|...+.||+|+||.||++.. ++..+|+|.+......  ...+.+|+.++..++|+||+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence            3456788899999999999999999999999999988 7889999998764432  246889999999999999999999


Q ss_pred             EEEeCCeeEEEEeeC
Q 040342          117 CCLETENPVLVFEYV  131 (131)
Q Consensus       117 ~~~~~~~~~lv~E~~  131 (131)
                      ++..++..++|+||+
T Consensus        95 ~~~~~~~~~lv~e~~  109 (326)
T 3uim_A           95 FCMTPTERLLVYPYM  109 (326)
T ss_dssp             EECCSSCCEEEEECC
T ss_pred             EEecCCceEEEEEec
Confidence            999888999999985

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.44  E-value=1.7e-12  Score=86.18  Aligned_cols=91  Identities=22%  Similarity=0.364  Sum_probs=78.5

Q ss_pred             CcceecHHHHHHhhcCCCcC------CeeeeCCCeEEEEEEECCeeEEEEEEecCch-----hHHHHHHHHHHHhccCCc
Q 040342           41 PIRCFHENELKIATKNYDRQ------KVITTGLGYELFKGFLHDYPVSIMKFVNSDY-----AAEFCFNNIVFASQMNHK  109 (131)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~------~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~-----~~~~~~~e~~~l~~l~h~  109 (131)
                      +...+++.++..++++|...      +.||+|+||.||++...+..+|+|.+.....     ....+.+|+.++..++|+
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            45678899999999998876      8899999999999988778899999865321     135688999999999999


Q ss_pred             cccceeeEEEeCCeeEEEEeeC
Q 040342          110 NVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       110 niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+++++++...+..++++||+
T Consensus        91 ~i~~~~~~~~~~~~~~lv~e~~  112 (307)
T 2nru_A           91 NLVELLGFSSDGDDLCLVYVYM  112 (307)
T ss_dssp             TBCCEEEEECSSSSCEEEEECC
T ss_pred             CeEEEEEEEecCCceEEEEEec
Confidence            9999999999888999999985

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.44  E-value=1e-12  Score=88.14  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=72.7

Q ss_pred             ceecHHHHHHhhcC----------CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCc
Q 040342           43 RCFHENELKIATKN----------YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHK  109 (131)
Q Consensus        43 ~~~~~~~~~~~~~~----------~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~  109 (131)
                      ..++++++..++..          |.....||+|+||.||++..  +|..||+|.+...... ...+.+|+.++..++|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            34666776665543          44456899999999999998  6889999999765433 46688999999999999


Q ss_pred             cccceeeEEEeCCeeEEEEeeC
Q 040342          110 NVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       110 niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ||+++++.+...+..++|+||+
T Consensus       103 niv~~~~~~~~~~~~~lv~e~~  124 (321)
T 2c30_A          103 NVVEMYKSYLVGEELWVLMEFL  124 (321)
T ss_dssp             TBCCEEEEEEETTEEEEEECCC
T ss_pred             CcceEEEEEEECCEEEEEEecC
Confidence            9999999999999999999985

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.42  E-value=9.5e-13  Score=89.88  Aligned_cols=78  Identities=9%  Similarity=0.174  Sum_probs=66.2

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..+.|...+.||+|+||.||++..     .+..||+|.+..... ...+.+|+.+|..+ +|+||+++++++...+..+|
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~-~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~l   97 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH-PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVI   97 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC-HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEE
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEE
Confidence            456788899999999999999975     356799999875432 34578899999988 59999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ||||+
T Consensus        98 vmE~~  102 (361)
T 4f9c_A           98 AMPYL  102 (361)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99996

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.42  E-value=8.1e-13  Score=86.34  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=69.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .++|.....||+|+||.||.+.. ++..+|+|.+.........+.+|+.++..++|+||+++++++......++|+||+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   87 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   87 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence            34567788999999999999999 8888999999876555567899999999999999999999999888999999985

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.42  E-value=1.3e-13  Score=92.27  Aligned_cols=87  Identities=25%  Similarity=0.378  Sum_probs=73.9

Q ss_pred             ecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           45 FHENELKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      ++..++...+++|.....||+|+||.||++.. ++..+|+|.+...... ...+.+|+.++..++|+||+++++++...+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  108 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN  108 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            33444555678899999999999999999998 7889999988765433 467899999999999999999999999888


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       109 ~~~lv~e~~  117 (321)
T 2qkw_B          109 EMILIYKYM  117 (321)
T ss_dssp             CCEEEEECC
T ss_pred             eEEEEEEcC
Confidence            999999985

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.42  E-value=1.7e-12  Score=87.19  Aligned_cols=77  Identities=13%  Similarity=0.116  Sum_probs=68.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|...+.||+|+||.||++..  ++..+|+|.+.........+.+|+.++..++|+||+++++++...+..++|+||+
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~   83 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeC
Confidence            4677788999999999999998  6889999999866544566889999999999999999999999999999999985

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.41  E-value=1.5e-12  Score=86.77  Aligned_cols=77  Identities=14%  Similarity=0.210  Sum_probs=67.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||++..  ++..+++|.+...... ...+.+|+.++..++|+||+++++++..++..++|+||+
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence            4566788999999999999998  6788999988665443 467899999999999999999999999999999999985

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.41  E-value=3.4e-13  Score=94.45  Aligned_cols=83  Identities=12%  Similarity=0.211  Sum_probs=71.3

Q ss_pred             HHHHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           48 NELKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        48 ~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..++...++|...+.||+|+||.||++.+ .+..||+|.+.........+.+|+.++..++|+||+++++++. .+..++
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~l  259 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYI  259 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEE
Confidence            34455567777888999999999999999 7788999999876555678999999999999999999999986 667899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       260 v~e~~  264 (454)
T 1qcf_A          260 ITEFM  264 (454)
T ss_dssp             EECCC
T ss_pred             EEeec
Confidence            99986

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.41  E-value=2.3e-12  Score=85.54  Aligned_cols=78  Identities=19%  Similarity=0.315  Sum_probs=68.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ...|...+.||+|+||.||.+..  .+..+|+|.+...... ...+.+|+.++..++|+||+++++.+..++..++|+||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            35678889999999999999987  7889999998754433 46688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        99 ~   99 (297)
T 3fxz_A           99 L   99 (297)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.41  E-value=1.6e-13  Score=96.11  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++...++|.....||+|+||.||++.+ .+..||+|.+.........+.+|+.++..++|+||+++++++.. +..++|
T Consensus       178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv  256 (452)
T 1fmk_A          178 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV  256 (452)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred             ccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEE
Confidence            3444556677788999999999999999 66789999998765455679999999999999999999999865 678999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       257 ~e~~  260 (452)
T 1fmk_A          257 TEYM  260 (452)
T ss_dssp             ECCC
T ss_pred             ehhh
Confidence            9986

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.40  E-value=1.5e-12  Score=87.78  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=68.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .++|...+.||+|+||.||.+..  ++..||+|.+......   ...+.+|+.++..++|+||+++++++......++|+
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            45788889999999999999998  7889999999754322   356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        94 e~~   96 (328)
T 3fe3_A           94 EYA   96 (328)
T ss_dssp             CCC
T ss_pred             ECC
Confidence            986

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.40  E-value=2.4e-13  Score=96.97  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++...++|.....||+|+||.||++.+ .+..||+|.+.........+.+|+.+|..++|+||+++++++.. +..+||
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv  339 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV  339 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEe
Confidence            3444556677788999999999999999 66789999998765455679999999999999999999999865 678999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       340 ~e~~  343 (535)
T 2h8h_A          340 TEYM  343 (535)
T ss_dssp             ECCC
T ss_pred             eehh
Confidence            9986

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.39  E-value=1.7e-12  Score=85.90  Aligned_cols=77  Identities=10%  Similarity=0.106  Sum_probs=67.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +.|.....||+|+||.||++..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++++...+..++|+
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            5678889999999999999998  5889999999764322    266889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       111 e~~  113 (286)
T 3uqc_A          111 EWI  113 (286)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            985

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.39  E-value=7.5e-13  Score=88.45  Aligned_cols=82  Identities=16%  Similarity=0.306  Sum_probs=70.0

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      +....++|...+.||+|+||.||++...+..+|+|.+......   ...+.+|+.++..++|+||+++++++...+..++
T Consensus        32 ~~i~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 3p86_A           32 MDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI  111 (309)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred             ccCChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence            3344567777889999999999999888889999998754422   3568899999999999999999999998889999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       112 v~e~~  116 (309)
T 3p86_A          112 VTEYL  116 (309)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99985

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.39  E-value=2.7e-12  Score=84.83  Aligned_cols=76  Identities=22%  Similarity=0.333  Sum_probs=66.4

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .|...+.||+|+||.||++..  ++..+|+|.+......   ...+.+|+.++..++|+||+++++++..+...++|+||
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   82 (292)
T 3o0g_A            3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEec
Confidence            566778999999999999998  6788999999754322   36688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        83 ~   83 (292)
T 3o0g_A           83 C   83 (292)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.38  E-value=1.9e-12  Score=84.50  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .++|.....||+|+||.||.+.. .+..+|+|.+.........+.+|+.++..++|+||+++++++......++|+||+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence            35667788999999999999988 7778999999876555677899999999999999999999998888999999985

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.38  E-value=5.8e-13  Score=94.24  Aligned_cols=80  Identities=14%  Similarity=0.326  Sum_probs=70.2

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ....+|...+.||+|+||.||++.+  .+..||+|.+.........+.+|+.+|..++|+||+++++++...+..+||+|
T Consensus       217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E  296 (495)
T 1opk_A          217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE  296 (495)
T ss_dssp             CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence            3445667778999999999999999  57899999998765556779999999999999999999999998889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       297 ~~  298 (495)
T 1opk_A          297 FM  298 (495)
T ss_dssp             CC
T ss_pred             cc
Confidence            86

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.38  E-value=1.4e-12  Score=88.85  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.|...+.||+|+||.||.+..  .+..+|+|.+.........+.+|+.++..++|+||+++++++......++|+||+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeC
Confidence            35677789999999999999998  7789999999865544566889999999999999999999999999999999985

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.37  E-value=2.1e-12  Score=86.24  Aligned_cols=78  Identities=17%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .+.|...+.||+|+||.||++.. .+..+|+|.+......   ...+.+|+.++..++|+||+++++++......++|+|
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            35677788999999999999999 8889999998754322   3568899999999999999999999998889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       100 ~~  101 (311)
T 3niz_A          100 FM  101 (311)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.37  E-value=9e-13  Score=90.25  Aligned_cols=82  Identities=22%  Similarity=0.284  Sum_probs=69.3

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      +....++|...+.||+|+||.||++..  ++..||+|.+......  ...+.+|+.++..++|+||+++++++...+..+
T Consensus       109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  188 (377)
T 3cbl_A          109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY  188 (377)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred             cEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcE
Confidence            334456677788999999999999999  6788999998754322  356889999999999999999999999888999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus       189 lv~e~~  194 (377)
T 3cbl_A          189 IVMELV  194 (377)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999986

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.36  E-value=2.3e-12  Score=84.65  Aligned_cols=79  Identities=18%  Similarity=0.268  Sum_probs=66.7

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..++|...+.||+|+||.||.+.. .+..+|+|.+.........+.+|+.++..++|+||+++++++......++|+||+
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  101 (283)
T 3gen_A           22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM  101 (283)
T ss_dssp             CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred             CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence            345677788999999999999998 7778999999876555677899999999999999999999999888999999985

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.36  E-value=3.5e-12  Score=89.27  Aligned_cols=78  Identities=21%  Similarity=0.295  Sum_probs=67.0

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCC-eeEEEEeeC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE-NPVLVFEYV  131 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-~~~lv~E~~  131 (131)
                      ..++|...+.||+|+||.||++.+.+..||+|.++... ....+.+|+.++..++|+||+++++++.... ..+||+||+
T Consensus       191 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~  269 (450)
T 1k9a_A          191 NMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM  269 (450)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCT-TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECC
T ss_pred             ChHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCch-HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEec
Confidence            34566778899999999999999988899999998654 3467899999999999999999999987654 789999986

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.36  E-value=2.4e-12  Score=86.13  Aligned_cols=77  Identities=17%  Similarity=0.330  Sum_probs=55.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +.|...+.||+|+||.||.+..  ++..+|+|.+......  ...+.+|+.++..++|+||+++++++..++..++|+||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   84 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEF   84 (317)
T ss_dssp             --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEEC
T ss_pred             cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEe
Confidence            4677788999999999999988  6788999998754332  35688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        85 ~   85 (317)
T 2pmi_A           85 M   85 (317)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.36  E-value=3.2e-12  Score=85.87  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=65.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ++|...+.||+|+||.||++..  .+..+|+|.+......  ...+.+|+.++..++|+||+++++++..++..++|+||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   86 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence            4677789999999999999998  6788999998754332  35688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        87 ~   87 (323)
T 3tki_A           87 C   87 (323)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.35  E-value=4.2e-12  Score=83.77  Aligned_cols=76  Identities=18%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|...+.||+|+||.||++.. .+..+|+|.+......   ...+.+|+.++..++|+||+++++++...+..++|+||+
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (288)
T 1ob3_A            3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHL   82 (288)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred             cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEec
Confidence            466678999999999999998 7889999998754332   256889999999999999999999999889999999985

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.35  E-value=5e-12  Score=85.79  Aligned_cols=77  Identities=23%  Similarity=0.289  Sum_probs=66.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ..|...+.||+|+||.||++..  ++..||+|.+......    ...+.+|+.++..++|+||+++++++...+..++|+
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            3466778899999999999997  7889999999754321    256889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       134 e~~  136 (348)
T 1u5q_A          134 EYC  136 (348)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            985

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.35  E-value=1.7e-12  Score=88.05  Aligned_cols=90  Identities=10%  Similarity=0.047  Sum_probs=74.9

Q ss_pred             cceecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-----Cccccce
Q 040342           42 IRCFHENELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-----HKNVIRL  114 (131)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~l  114 (131)
                      ...+++.+.....+.|.....||+|+||.||++..  .+..+|+|.+.........+..|+.++..+.     |+||+++
T Consensus        22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~  101 (360)
T 3llt_A           22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKY  101 (360)
T ss_dssp             GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred             ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence            34455555555677888899999999999999998  7788999999865544566788999998886     9999999


Q ss_pred             eeEEEeCCeeEEEEeeC
Q 040342          115 IGCCLETENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~~~~~lv~E~~  131 (131)
                      ++.+...+..++|+||+
T Consensus       102 ~~~~~~~~~~~lv~e~~  118 (360)
T 3llt_A          102 HGKFMYYDHMCLIFEPL  118 (360)
T ss_dssp             EEEEEETTEEEEEECCC
T ss_pred             cceeeECCeeEEEEcCC
Confidence            99999999999999985

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.35  E-value=1.6e-12  Score=90.75  Aligned_cols=83  Identities=16%  Similarity=0.118  Sum_probs=70.2

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      ++....++|...+.||+|+||.||++..  .+..+|+|.+......    ...+..|..++..++|+||+++++++...+
T Consensus        68 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~  147 (437)
T 4aw2_A           68 QMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDN  147 (437)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred             cccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC
Confidence            3444567888899999999999999998  6788999999753322    134889999999999999999999999999


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..+||+||+
T Consensus       148 ~~~lV~Ey~  156 (437)
T 4aw2_A          148 NLYLVMDYY  156 (437)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEecC
Confidence            999999986

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.35  E-value=3.6e-12  Score=85.27  Aligned_cols=68  Identities=15%  Similarity=0.222  Sum_probs=56.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      ++|...+.||+|+||.||++..  ++..+|+|.+......  ...+.+|+.++..++|+||+++++++....
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   77 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETP   77 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECC
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEec
Confidence            4567788999999999999998  7889999999754322  467899999999999999999999886543

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.35  E-value=2e-12  Score=89.63  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      +....++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+..|+.++..++|+||+++++++.....
T Consensus        64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~  143 (410)
T 3v8s_A           64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY  143 (410)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE
Confidence            334456788889999999999999998  6788999999753322    2447899999999999999999999999999


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .+||+||+
T Consensus       144 ~~lV~E~~  151 (410)
T 3v8s_A          144 LYMVMEYM  151 (410)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            99999986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.35  E-value=6.5e-13  Score=87.46  Aligned_cols=80  Identities=14%  Similarity=0.326  Sum_probs=70.5

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ...++|.....||+|+||.||.+..  .+..+|+|.+.........+.+|+.++..++|+||+++++++......++|+|
T Consensus        10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            3456677788999999999999998  58899999998766556778999999999999999999999998889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        90 ~~   91 (288)
T 3kfa_A           90 FM   91 (288)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.35  E-value=5.8e-12  Score=85.97  Aligned_cols=78  Identities=18%  Similarity=0.101  Sum_probs=67.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-------HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-------AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .+.|...+.||+|+||.||++..  ++..+|+|.+......       ...+.+|+.++..++|+||+++++++......
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            45677789999999999999998  6889999999754321       25688999999999999999999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        91 ~lv~e~~   97 (361)
T 2yab_A           91 VLILELV   97 (361)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999985

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.34  E-value=4.6e-12  Score=82.49  Aligned_cols=77  Identities=19%  Similarity=0.285  Sum_probs=68.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||.+.. ++..+++|.+.........+.+|+.++..++|+|++++++++...+..++++||+
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM   85 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence            4566778999999999999999 8889999999876555567899999999999999999999999888999999985

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.34  E-value=7.1e-12  Score=86.27  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .+.|...+.||+|+||.||++..  ++..+|+|.+...... ...+.+|+.++..++|+||+++++++......++|+||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            35677888999999999999998  6788999998765433 35688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       130 ~  130 (387)
T 1kob_A          130 L  130 (387)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.34  E-value=5e-12  Score=85.81  Aligned_cols=77  Identities=13%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch------hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY------AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      +.|...+.||+|+||.||++..  ++..+|+|.+.....      ....+.+|+.++..++|+||+++++.+...+..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            4577788999999999999988  688999999864321      13568899999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       104 v~e~~  108 (351)
T 3c0i_A          104 VFEFM  108 (351)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99986

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.34  E-value=3.6e-12  Score=92.78  Aligned_cols=78  Identities=6%  Similarity=0.084  Sum_probs=63.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHH---HHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFN---NIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~---e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .++|...+.||+|+||.||.+..  +|..+|+|.+......    ......   ++.++..++|||||++++++...+.+
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            35677889999999999999998  7889999999753321    122333   35667778899999999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ||||||+
T Consensus       268 ylVmEy~  274 (689)
T 3v5w_A          268 SFILDLM  274 (689)
T ss_dssp             EEEECCC
T ss_pred             EEEEecC
Confidence            9999996

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.34  E-value=4.5e-12  Score=85.75  Aligned_cols=77  Identities=14%  Similarity=0.128  Sum_probs=66.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +.|...+.||+|+||.||.+..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++++......++|+
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            4677788999999999999998  7789999998754222    246889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        89 E~~   91 (336)
T 3h4j_B           89 EYA   91 (336)
T ss_dssp             CCC
T ss_pred             ECC
Confidence            985

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.34  E-value=4e-12  Score=86.71  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .++|...+.||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++++...+..++|+
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            45678889999999999999998  6889999999754322   356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       108 e~~  110 (362)
T 2bdw_A          108 DLV  110 (362)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            985

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.34  E-value=3.4e-12  Score=85.59  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCC----eeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE----NPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~----~~~lv~E  129 (131)
                      .++|...+.||+|+||.||++...+..||+|.+............|+.++..++|+||+++++++....    ..++|+|
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e  102 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITA  102 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEe
Confidence            456778899999999999999888889999999765544455667888899999999999999997644    3699999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       103 ~~  104 (322)
T 3soc_A          103 FH  104 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=82.45  Aligned_cols=77  Identities=26%  Similarity=0.362  Sum_probs=66.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +.|...+.||+|+||.||++..  ++..+|+|.+......   ...+.+|+.++..++|+||+++++++......++|+|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            4567788999999999999998  6889999988654332   3567899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        83 ~~   84 (311)
T 4agu_A           83 YC   84 (311)
T ss_dssp             CC
T ss_pred             eC
Confidence            85

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.33  E-value=8.1e-12  Score=85.53  Aligned_cols=72  Identities=22%  Similarity=0.241  Sum_probs=59.1

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.||+|+||.||++..  .+..+|+|.+...... ...+.+|+.++..++|+||+++++++...+..+||+||+
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~  168 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYV  168 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence            45799999999999998  6889999999875543 467899999999999999999999999999999999986

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.33  E-value=3.5e-12  Score=86.37  Aligned_cols=88  Identities=11%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             eecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccc
Q 040342           44 CFHENELKIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIR  113 (131)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~  113 (131)
                      ++....++...++|.....||+|+||.||++.+       .+..||+|.+......  ...+.+|+.++..+ +|+||++
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence            345566777788899999999999999999984       3468999999764433  35689999999999 6899999


Q ss_pred             eeeEEEeCC-eeEEEEeeC
Q 040342          114 LIGCCLETE-NPVLVFEYV  131 (131)
Q Consensus       114 l~g~~~~~~-~~~lv~E~~  131 (131)
                      +++++...+ ..++|+||+
T Consensus        91 ~~~~~~~~~~~~~iv~e~~  109 (359)
T 3vhe_A           91 LLGACTKPGGPLMVIVEFC  109 (359)
T ss_dssp             EEEEECSTTSCCEEEEECC
T ss_pred             eeeeeecCCCceEEEEEec
Confidence            999987644 489999985

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.32  E-value=2.5e-11  Score=80.01  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=64.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.....||+|+||.||.+..  ++..|++|.+...... ...+.+|+.++..++|+||+++++.+...+..++|+||+
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            344456899999999999998  6778999998765433 466889999999999999999999999999999999985

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.32  E-value=8.6e-12  Score=85.57  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=67.8

Q ss_pred             hcCCCcCCeeeeC--CCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTG--LGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g--~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .+.|...+.||+|  +||.||.+..  ++..||+|.+......   ...+.+|+.++..++|+||+++++++...+..++
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            4567778999999  9999999998  6889999999754322   3567889999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       104 v~e~~  108 (389)
T 3gni_B          104 VTSFM  108 (389)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99986

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.32  E-value=5.3e-12  Score=84.83  Aligned_cols=77  Identities=25%  Similarity=0.321  Sum_probs=65.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +.|...+.||+|+||.||.+..  .+   ..+|+|.+......  ...+.+|+.++..++|+||+++++++..+...++|
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            4566678999999999999998  33   35999999864322  36789999999999999999999999888899999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       129 ~e~~  132 (325)
T 3kul_A          129 TEYM  132 (325)
T ss_dssp             EECC
T ss_pred             eeCC
Confidence            9985

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.32  E-value=5.5e-12  Score=84.80  Aligned_cols=80  Identities=19%  Similarity=0.305  Sum_probs=66.7

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ...+.|.....||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++++......++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            3456788889999999999999987  7889999998754332   2457799999999999999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       111 v~e~~  115 (329)
T 3gbz_A          111 IFEYA  115 (329)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99985

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.32  E-value=6.9e-12  Score=84.54  Aligned_cols=81  Identities=16%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc------hhHHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD------YAAEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      ....+.|.....||+|+||.||.+..  .+..+|+|.+....      .....+.+|+.++..++|+||+++++++...+
T Consensus        22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence            34456788889999999999999998  67789999987532      11366889999999999999999999999999


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       102 ~~~lv~e~~  110 (345)
T 3hko_A          102 YICLVMELC  110 (345)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEeCC
Confidence            999999985

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.32  E-value=9.7e-12  Score=82.36  Aligned_cols=78  Identities=17%  Similarity=0.262  Sum_probs=62.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---------------------------HHHHHHHHHHHh
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---------------------------AEFCFNNIVFAS  104 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---------------------------~~~~~~e~~~l~  104 (131)
                      .++|...+.||+|+||.||.+..  .+..+|+|.+......                           ...+.+|+.++.
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            35677789999999999999988  7889999998754311                           145789999999


Q ss_pred             ccCCccccceeeEEEe--CCeeEEEEeeC
Q 040342          105 QMNHKNVIRLIGCCLE--TENPVLVFEYV  131 (131)
Q Consensus       105 ~l~h~niv~l~g~~~~--~~~~~lv~E~~  131 (131)
                      .++|+||+++++++..  ....++|+||+
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~  120 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELV  120 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECC
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecC
Confidence            9999999999999876  56889999985

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.32  E-value=6.7e-12  Score=87.81  Aligned_cols=78  Identities=15%  Similarity=0.162  Sum_probs=66.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .+.|...+.||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++.+...+..++|+
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            45677789999999999999988  7889999999765432   356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        90 E~~   92 (444)
T 3soa_A           90 DLV   92 (444)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            985

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=82.90  Aligned_cols=77  Identities=21%  Similarity=0.358  Sum_probs=64.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC--eeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE--NPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~--~~~lv~  128 (131)
                      +.|...+.||+|+||.||++..  .+..+|+|.+......  ...+.+|+.++..++|+||+++++++....  ..++|+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            4566788999999999999998  5889999999754432  356789999999999999999999987654  779999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        89 e~~   91 (319)
T 4euu_A           89 EFC   91 (319)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            985

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.31  E-value=2.7e-12  Score=84.18  Aligned_cols=79  Identities=14%  Similarity=0.283  Sum_probs=67.2

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ...+.|.....||+|+||.||.+.. .+..+++|.+.........+.+|+.++..++|+|++++++++. .+..++|+||
T Consensus        10 v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~   88 (279)
T 1qpc_A           10 VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY   88 (279)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             cCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence            3456677788999999999999998 7778999999866545567899999999999999999999886 4568999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        89 ~   89 (279)
T 1qpc_A           89 M   89 (279)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.31  E-value=1.1e-11  Score=87.72  Aligned_cols=79  Identities=19%  Similarity=0.230  Sum_probs=65.0

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch--------------hHHHHHHHHHHHhccCCccccceee
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY--------------AAEFCFNNIVFASQMNHKNVIRLIG  116 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~--------------~~~~~~~e~~~l~~l~h~niv~l~g  116 (131)
                      ..+.|...+.||+|+||.||.+..  .+..+|+|.+.....              ....+.+|+.++..++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            346788889999999999999998  677899999875431              1256889999999999999999999


Q ss_pred             EEEeCCeeEEEEeeC
Q 040342          117 CCLETENPVLVFEYV  131 (131)
Q Consensus       117 ~~~~~~~~~lv~E~~  131 (131)
                      ++......++|+||+
T Consensus       114 ~~~~~~~~~lv~e~~  128 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFY  128 (504)
T ss_dssp             EEECSSEEEEEEECC
T ss_pred             EEEcCCEEEEEEecC
Confidence            999999999999985

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.31  E-value=4.5e-12  Score=82.57  Aligned_cols=77  Identities=17%  Similarity=0.295  Sum_probs=66.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC--CeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~~lv~E  129 (131)
                      ++|...+.||+|+||.||++...+..+|+|.+......   ...+.+|+.++..++|+||+++++++...  ...++|+|
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   89 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH   89 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeec
Confidence            46777889999999999999998889999999764322   35689999999999999999999999876  67899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        90 ~~   91 (271)
T 3kmu_A           90 WM   91 (271)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.31  E-value=7.4e-12  Score=81.72  Aligned_cols=77  Identities=21%  Similarity=0.304  Sum_probs=62.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh-----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA-----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~-----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ++|...+.||+|+||.||++...+..+|+|.+......     ...+.+|+.++..++|+||+++++++...+..++|+|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVME   86 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEE
Confidence            46677889999999999999998889999998654322     2568899999999999999999999998889999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        87 ~~   88 (271)
T 3dtc_A           87 FA   88 (271)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.31  E-value=6.1e-12  Score=86.12  Aligned_cols=78  Identities=24%  Similarity=0.315  Sum_probs=65.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..+|...+.||+|+||.||++..     .+..+|+|.+......  ...+.+|+.++..++|+||+++++++......++
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            35678889999999999999976     2456999998764322  3678999999999999999999999998889999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       124 v~e~~  128 (373)
T 2qol_A          124 VTEYM  128 (373)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99986

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.31  E-value=1e-11  Score=83.47  Aligned_cols=77  Identities=17%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch-------hHHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY-------AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      +.|...+.||+|+||.||++..  .+..+|+|.+.....       ....+.+|+.++..++|+||+++++++......+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            3467788999999999999998  688999999875432       1356889999999999999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        91 lv~e~~   96 (326)
T 2y0a_A           91 LILELV   96 (326)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999985

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.31  E-value=8.8e-12  Score=82.17  Aligned_cols=77  Identities=13%  Similarity=0.081  Sum_probs=66.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +.|...+.||+|+||.||++..  .+..+++|.+......  ...+.+|+.++..++|+||+++++++......++|+||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            4567789999999999999998  6788999998764432  36788999999999999999999999998999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       102 ~  102 (285)
T 3is5_A          102 C  102 (285)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.31  E-value=9.3e-12  Score=81.55  Aligned_cols=77  Identities=18%  Similarity=0.154  Sum_probs=66.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|...+.||+|+||.||.+..  .+..+++|.+...... ...+.+|+.++..++|+||+++++.+......++|+||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC   88 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence            4567788999999999999998  5678999998764333 467889999999999999999999999999999999985

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.30  E-value=5.6e-12  Score=84.84  Aligned_cols=82  Identities=18%  Similarity=0.277  Sum_probs=69.5

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE  120 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~  120 (131)
                      +....++|...+.||+|+||.||++.. .      +..+|+|.+......  ...+.+|+.++..++|+||+++++++..
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  121 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV  121 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence            344567888899999999999999988 2      267999999764332  3668999999999999999999999998


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      .+..++|+||+
T Consensus       122 ~~~~~lv~e~~  132 (343)
T 1luf_A          122 GKPMCLLFEYM  132 (343)
T ss_dssp             SSSCEEEEECC
T ss_pred             CCceEEEEecC
Confidence            89999999985

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.30  E-value=1.1e-11  Score=83.92  Aligned_cols=77  Identities=10%  Similarity=0.048  Sum_probs=66.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||.+..  ++..+|+|.+.....    ....+.+|+.++..++|+||+++++.+...+..++|+
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            4677788999999999999998  688999999975421    1356789999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        85 E~~   87 (337)
T 1o6l_A           85 EYA   87 (337)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            985

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.30  E-value=1.3e-11  Score=81.00  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .++|...+.||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++.+..++..++++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            35677788999999999999998  6789999998754322   356889999999999999999999999989999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        85 e~~   87 (284)
T 3kk8_A           85 DLV   87 (284)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            985

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.30  E-value=4.1e-12  Score=88.11  Aligned_cols=84  Identities=14%  Similarity=0.098  Sum_probs=70.7

Q ss_pred             HHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeC
Q 040342           48 NELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLET  121 (131)
Q Consensus        48 ~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~  121 (131)
                      .+.....++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+..|..++..++|+||+++++++...
T Consensus        54 ~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~  133 (412)
T 2vd5_A           54 KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDE  133 (412)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred             hhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC
Confidence            34445567888899999999999999998  6889999999753321    24478899999999999999999999999


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..+||+||+
T Consensus       134 ~~~~lVmE~~  143 (412)
T 2vd5_A          134 NYLYLVMEYY  143 (412)
T ss_dssp             SEEEEEECCC
T ss_pred             CEEEEEEcCC
Confidence            9999999986

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.30  E-value=1.5e-11  Score=81.47  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=66.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +.|...+.||+|+||.||.+..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++++..++..++|+
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            4577788999999999999997  6788999998643221    356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        91 e~~   93 (294)
T 4eqm_A           91 EYI   93 (294)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            985

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.29  E-value=1.3e-11  Score=81.23  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=65.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CC-------eeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HD-------YPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~-------~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      ++|...+.||+|+||.||++..  .+       ..+++|.+...... ...+.+|+.++..++|+||+++++++..++..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN   87 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence            4566778999999999999987  33       46999998765433 46789999999999999999999999988899


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        88 ~lv~e~~   94 (289)
T 4fvq_A           88 ILVQEFV   94 (289)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999985

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.29  E-value=9.2e-12  Score=84.47  Aligned_cols=78  Identities=14%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ..+.|.....||+|+||.||++..  .+..+|+|.+.... ....+.+|+.++..++|+||+++++++......++|+||
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  129 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL  129 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence            345677788999999999999998  57789999987543 235578899999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       130 ~  130 (349)
T 2w4o_A          130 V  130 (349)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.29  E-value=1.3e-11  Score=83.71  Aligned_cols=77  Identities=9%  Similarity=0.105  Sum_probs=67.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ++|.....||+|+||.||++..  .+..+|+|.+......  ...+.+|+.++..++|+||+++++++..++..++|+||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            4567788999999999999998  6788999998765322  36688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       113 ~  113 (360)
T 3eqc_A          113 M  113 (360)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.29  E-value=4e-12  Score=85.07  Aligned_cols=83  Identities=16%  Similarity=0.224  Sum_probs=69.6

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEe-----
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLE-----  120 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~-----  120 (131)
                      ++....+.|...+.||+|+||.||.+..  .+..+++|.+.........+.+|+.++..+ +|+||+++++.+..     
T Consensus        18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~   97 (326)
T 2x7f_A           18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG   97 (326)
T ss_dssp             CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred             hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence            3344567788889999999999999998  788999999976554456788999999998 79999999999876     


Q ss_pred             -CCeeEEEEeeC
Q 040342          121 -TENPVLVFEYV  131 (131)
Q Consensus       121 -~~~~~lv~E~~  131 (131)
                       ....++|+||+
T Consensus        98 ~~~~~~lv~e~~  109 (326)
T 2x7f_A           98 MDDQLWLVMEFC  109 (326)
T ss_dssp             CCCEEEEEEECC
T ss_pred             ccceEEEEEEcC
Confidence             46789999985

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.29  E-value=1.6e-11  Score=81.33  Aligned_cols=78  Identities=10%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .+.|.....||+|+||.||.+..  .+..+++|.+...... ...+.+|+.++..++|+||+++++.+...+..++|+||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            45677788999999999999998  5788999998754433 46788999999999999999999999988899999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        98 ~   98 (302)
T 2j7t_A           98 C   98 (302)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.29  E-value=1e-11  Score=85.40  Aligned_cols=77  Identities=9%  Similarity=0.109  Sum_probs=66.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|.....||+|+||.||.+..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++++...+..++|+
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            4677788999999999999998  6788999998754321    356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        95 e~~   97 (384)
T 4fr4_A           95 DLL   97 (384)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            985

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.28  E-value=1.5e-11  Score=80.64  Aligned_cols=78  Identities=13%  Similarity=0.281  Sum_probs=66.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++|.....||+|+||.||.+..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++++......++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            45677788999999999999998  6678999998754322    35688999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        88 ~e~~   91 (279)
T 3fdn_A           88 LEYA   91 (279)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9985

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.28  E-value=1.5e-11  Score=81.64  Aligned_cols=77  Identities=19%  Similarity=0.146  Sum_probs=65.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|.....||+|+||.||.+..  ++..+|+|.+...... ...+.+|+.++..++|+||+++++++...+..++|+||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV   88 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence            4567788999999999999998  6889999999865433 356889999999999999999999999999999999985

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.28  E-value=1.5e-11  Score=82.59  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+.+|..++..++|+||+++++.+......++|+
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence            4677788999999999999998  6889999999754321    355778999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        86 e~~   88 (318)
T 1fot_A           86 DYI   88 (318)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            985

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.28  E-value=8.3e-12  Score=85.23  Aligned_cols=78  Identities=19%  Similarity=0.281  Sum_probs=65.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .++|...+.||+|+||.||++.+       .+..||+|.+......  ...+.+|+.++..++|+||+++++++......
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            35667788899999999999984       3457999998754322  35688999999999999999999999988899


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus       150 ~lv~e~~  156 (367)
T 3l9p_A          150 FILLELM  156 (367)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999985

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.28  E-value=1.2e-11  Score=87.20  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=67.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||.+..  +|..||+|.+......    ...+.+|+.++..++|+||+++++++...+..++|+
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            5677788999999999999998  7889999999754322    256889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        96 E~~   98 (476)
T 2y94_A           96 EYV   98 (476)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            985

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.28  E-value=2e-11  Score=80.70  Aligned_cols=77  Identities=19%  Similarity=0.310  Sum_probs=63.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ++|...+.||+|+||.||.+..  ++..+++|.+......   ...+.+|+.++..++|+||+++++++...+..++|+|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            4567788999999999999998  6789999998654322   2568899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        83 ~~   84 (299)
T 2r3i_A           83 FL   84 (299)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.27  E-value=1.7e-11  Score=86.64  Aligned_cols=77  Identities=17%  Similarity=0.191  Sum_probs=62.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +.|...+.||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++++......++|+|
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            3577788999999999999998  6788999998764322   3568899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       117 ~~  118 (494)
T 3lij_A          117 CY  118 (494)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.27  E-value=2.1e-11  Score=83.96  Aligned_cols=77  Identities=21%  Similarity=0.358  Sum_probs=64.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC--eeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE--NPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~--~~~lv~  128 (131)
                      +.|...+.||+|+||.||++..  .+..+|+|.+......  ...+.+|+.++..++|+||+++++++....  ..++|+
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            4566788999999999999998  5889999999754332  356789999999999999999999987654  779999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        89 e~~   91 (396)
T 4eut_A           89 EFC   91 (396)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            985

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.27  E-value=2.2e-11  Score=79.84  Aligned_cols=77  Identities=13%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|.....||+|+||.||.+..  .+..+++|.+......    ...+.+|+.++..++|+|++++++++...+..++|+
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL   90 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence            4577788999999999999998  7788999999754322    256889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        91 e~~   93 (278)
T 3cok_A           91 EMC   93 (278)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            985

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.27  E-value=1.5e-11  Score=83.53  Aligned_cols=85  Identities=21%  Similarity=0.276  Sum_probs=70.1

Q ss_pred             HHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh------------HHHHHHHHHHHhccCCccccc
Q 040342           47 ENELKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA------------AEFCFNNIVFASQMNHKNVIR  113 (131)
Q Consensus        47 ~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~------------~~~~~~e~~~l~~l~h~niv~  113 (131)
                      ..++....+.|...+.||+|+||.||.+.. .+..+|+|.+......            ...+.+|+.++..++|+||++
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            456677788999999999999999999988 8889999988542211            256889999999999999999


Q ss_pred             eeeEEEeC-----CeeEEEEeeC
Q 040342          114 LIGCCLET-----ENPVLVFEYV  131 (131)
Q Consensus       114 l~g~~~~~-----~~~~lv~E~~  131 (131)
                      +++++...     ...++|+||+
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~  116 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELM  116 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECC
T ss_pred             eeeeEEeccCCCcceEEEEEccC
Confidence            99998542     3579999985

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.27  E-value=2.4e-11  Score=79.42  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ++|...+.||+|+||.||.+..  ++..+++|.+......  ...+.+|+.++..++|+|++++++.+..++..++|+||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEe
Confidence            4567788999999999999998  6788999998754322  36688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        87 ~   87 (276)
T 2yex_A           87 C   87 (276)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.27  E-value=4e-11  Score=79.54  Aligned_cols=77  Identities=22%  Similarity=0.238  Sum_probs=67.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ..|...+.||+|+||.||.+..  .+..+++|.+......  ...+.+|+.++..++|+|++++++.+......++|+||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            4577788999999999999987  6788999999754322  46788999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       102 ~  102 (303)
T 3a7i_A          102 L  102 (303)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.26  E-value=1.8e-11  Score=86.00  Aligned_cols=78  Identities=26%  Similarity=0.334  Sum_probs=65.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeC------C
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLET------E  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~  122 (131)
                      .+.|...+.||+|+||.||.+..  .+..||+|.+.....   ....+.+|+.++..++|+||+++++++...      .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            35677789999999999999988  788999999975422   236688999999999999999999998654      3


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..+||+||+
T Consensus       141 ~~~lv~E~~  149 (464)
T 3ttj_A          141 DVYLVMELM  149 (464)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEeCC
Confidence            569999986

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.26  E-value=4.2e-11  Score=79.81  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CCCc-CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDR-QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~-~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .|.. .+.||+|+||.||.+..  ++..+|+|.+...... ...+.+|+.++.++ +|+||+++++++...+..++|+||
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~   92 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEK   92 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEc
Confidence            4444 36799999999999987  7889999999765433 46688999999885 699999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        93 ~   93 (316)
T 2ac3_A           93 M   93 (316)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.26  E-value=2.1e-11  Score=82.86  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+.+|+.++..++|+||+++++.+......++|+
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            4677788999999999999998  6889999999754321    356788999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       121 e~~  123 (350)
T 1rdq_E          121 EYV  123 (350)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            985

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.26  E-value=1.6e-11  Score=82.46  Aligned_cols=77  Identities=26%  Similarity=0.412  Sum_probs=66.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +.|.....||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++++......++|+|
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            4566778999999999999998  5889999998654332   3557899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       105 ~~  106 (331)
T 4aaa_A          105 FV  106 (331)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.26  E-value=2.8e-11  Score=79.41  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=66.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch-------hHHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY-------AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      ++|...+.||+|+||.||.+..  .+..+++|.+.....       ....+.+|+.++..++|+||+++++.+......+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            3566788999999999999998  678999999875422       1356889999999999999999999999989999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        85 lv~e~~   90 (283)
T 3bhy_A           85 LILELV   90 (283)
T ss_dssp             EEEECC
T ss_pred             EEEeec
Confidence            999985

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.26  E-value=1.2e-11  Score=87.22  Aligned_cols=77  Identities=12%  Similarity=0.138  Sum_probs=66.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      +.|.....||+|+||.||++..  .+..+|+|.+.....   ....+.+|+.++..++||||+++++++......++|+|
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence            4577789999999999999998  688999999864322   24668899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       102 ~~  103 (486)
T 3mwu_A          102 LY  103 (486)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=85.33  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=63.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhH--HHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAA--EFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~--~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|...+.||+|+||.||++..  ++..+|+|.+.......  ..+.+|+.++..++|+||+++++++......++|+||+
T Consensus         3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (324)
T 3mtl_A            3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL   82 (324)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred             ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEeccc
Confidence            566778999999999999998  67889999987543321  24567999999999999999999999999999999985

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.26  E-value=2.9e-11  Score=80.96  Aligned_cols=77  Identities=19%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch-------hHHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY-------AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      +.|...+.||+|+||.||++..  ++..+|+|.+.....       ....+.+|+.++..++|+|++++++.+......+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            4567788999999999999998  688899999875432       1356889999999999999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        92 lv~e~~   97 (321)
T 2a2a_A           92 LILELV   97 (321)
T ss_dssp             EEECCC
T ss_pred             EEEEcC
Confidence            999985

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.26  E-value=2e-11  Score=80.62  Aligned_cols=77  Identities=17%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe------------
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE------------  120 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~------------  120 (131)
                      ++|.....||+|+||.||.+..  ++..+|+|.+.........+.+|+.++..++|+|++++++.+..            
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~   85 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVK   85 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccc
Confidence            4567788999999999999998  78899999997654445678899999999999999999998754            


Q ss_pred             -CCeeEEEEeeC
Q 040342          121 -TENPVLVFEYV  131 (131)
Q Consensus       121 -~~~~~lv~E~~  131 (131)
                       ....++|+||+
T Consensus        86 ~~~~~~lv~e~~   97 (303)
T 1zy4_A           86 KKSTLFIQMEYC   97 (303)
T ss_dssp             CEEEEEEEEECC
T ss_pred             cCCceEEEEecC
Confidence             35678999985

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.26  E-value=3.9e-11  Score=78.64  Aligned_cols=78  Identities=15%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++|...+.||+|+||.||.+..  ++..+|+|.+.....   ....+.+|+..+..+ +|+||+++++.+...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            34577788999999999999998  688999999875432   235678899888888 899999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        90 ~e~~   93 (289)
T 1x8b_A           90 NEYC   93 (289)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9985

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.25  E-value=4e-11  Score=78.44  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=67.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+.|...+.||+|+||.||.+..  .+..+++|.+......    ...+.+|+.++..++|+||+++++.+...+..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            35677788999999999999998  6889999998754322    25688999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        90 ~e~~   93 (276)
T 2h6d_A           90 MEYV   93 (276)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9985

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.25  E-value=3.8e-11  Score=81.40  Aligned_cols=77  Identities=19%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+..|..++..+ +|+||+++++++...+..++|
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            4567788999999999999998  6889999999754321    35578899999887 799999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        89 ~e~~   92 (345)
T 3a8x_A           89 IEYV   92 (345)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            9986

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.25  E-value=2.5e-11  Score=84.50  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=66.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC-----Ce
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET-----EN  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~  123 (131)
                      .++|...+.||+|+||.||++..  .+..||+|.+......   ...+.+|+.++..++|+||+++++++...     ..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            45778889999999999999998  7889999999753222   36688999999999999999999998765     56


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus       105 ~~lv~e~~  112 (432)
T 3n9x_A          105 LYIVLEIA  112 (432)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            89999985

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.25  E-value=2e-11  Score=82.54  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh------HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      .+.|.....||+|+||.||.+..  ++..+|+|.+......      ...+.+|+.++..++|+||+++++++......+
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence            45788889999999999999998  6788999998753221      145789999999999999999999999888999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        89 lv~e~~   94 (346)
T 1ua2_A           89 LVFDFM   94 (346)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999985

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.25  E-value=2.3e-11  Score=85.69  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +.|...+.||+|+||.||.+..  .+..+|+|.+.....    ....+.+|+.++..++|+||+++++++......++|+
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            4567788999999999999998  788999999865421    2466899999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       106 e~~  108 (484)
T 3nyv_A          106 EVY  108 (484)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            985

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.25  E-value=2.1e-11  Score=80.53  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEe--CCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLE--TENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~  124 (131)
                      .+.|...+.||+|+||.||.+.+      .+..+|+|.+...... ...+.+|+.++..++|+||+++++++..  ....
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence            34567788999999999999984      5778999999865544 4678999999999999999999999854  3468


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        89 ~lv~e~~   95 (295)
T 3ugc_A           89 KLIMEYL   95 (295)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.24  E-value=4.6e-11  Score=79.46  Aligned_cols=78  Identities=27%  Similarity=0.371  Sum_probs=65.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---h-hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---Y-AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~-~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++|...+.||+|+||.||++..  ++..+|+|.+....   . ....+.+|+.++..++|+||+++++.+...+..++|
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            35677789999999999999997  78899999987532   1 135688999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       111 ~e~~  114 (310)
T 2wqm_A          111 LELA  114 (310)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9985

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.24  E-value=4.6e-11  Score=79.61  Aligned_cols=78  Identities=6%  Similarity=0.020  Sum_probs=67.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+.|...+.||+|+||.||.+..  .+..+++|.+......    ...+.+|+.++..++|+||+++++++..++..+++
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            46788889999999999999998  6889999998754322    25688999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       113 ~e~~  116 (309)
T 2h34_A          113 MRLI  116 (309)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9985

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.24  E-value=2e-11  Score=83.41  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=65.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLET  121 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~  121 (131)
                      .++|...+.||+|+||.||.+..         .+..+|+|.+......  ...+.+|+.++..+ +|+||+++++++...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            35666778899999999999985         1246999999765332  36689999999999 799999999999988


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..++|+||+
T Consensus       160 ~~~~lv~e~~  169 (370)
T 2psq_A          160 GPLYVIVEYA  169 (370)
T ss_dssp             SSCEEEEECC
T ss_pred             CCEEEEEEcC
Confidence            9999999985

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.24  E-value=1.9e-11  Score=82.49  Aligned_cols=78  Identities=10%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhH------------------HHHHHHHHHHhccCCcccccee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAA------------------EFCFNNIVFASQMNHKNVIRLI  115 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~------------------~~~~~e~~~l~~l~h~niv~l~  115 (131)
                      .++|.....||+|+||.||.+...+..+|+|.+.......                  ..+.+|+.++..++|+|+++++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             cCceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            4577888999999999999999888899999987543211                  6789999999999999999999


Q ss_pred             eEEEeCCeeEEEEeeC
Q 040342          116 GCCLETENPVLVFEYV  131 (131)
Q Consensus       116 g~~~~~~~~~lv~E~~  131 (131)
                      +++...+..++|+||+
T Consensus       110 ~~~~~~~~~~lv~e~~  125 (348)
T 2pml_X          110 GIITNYDEVYIIYEYM  125 (348)
T ss_dssp             EEEESSSEEEEEEECC
T ss_pred             EEEeeCCeEEEEEecc
Confidence            9999999999999985

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.24  E-value=4.6e-11  Score=78.56  Aligned_cols=77  Identities=13%  Similarity=0.259  Sum_probs=66.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|.....||+|+||.||.+..  .+..+++|.+......    ...+.+|+.++..++|+|++++++++...+..++|+
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5677788999999999999998  6788999998754322    356889999999999999999999999989999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        94 e~~   96 (284)
T 2vgo_A           94 EFA   96 (284)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            985

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.24  E-value=3e-11  Score=81.96  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCee
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENP  124 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~  124 (131)
                      ...++|...+.||+|+||.||.+..  ++..+|+|.+.....    ....+..|..++..+ +|+||+++++.+...+..
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            3456788889999999999999998  688999999975421    134577888888876 899999999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        94 ~lv~E~~  100 (345)
T 1xjd_A           94 FFVMEYL  100 (345)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999985

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.24  E-value=8.6e-11  Score=78.72  Aligned_cols=78  Identities=6%  Similarity=0.057  Sum_probs=63.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHH-HHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIV-FASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~-~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .++|.....||+|+||.||++..  ++..+|+|.+......  ...+..|+. ++..++|+||+++++++...+..++|+
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            46777789999999999999998  6889999999765322  244555655 677789999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       101 e~~  103 (327)
T 3aln_A          101 ELM  103 (327)
T ss_dssp             CCC
T ss_pred             eec
Confidence            985

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.24  E-value=4.9e-11  Score=79.05  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=63.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch-----hHHHHHHHHHHHhccCCccccceeeEEE--eCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY-----AAEFCFNNIVFASQMNHKNVIRLIGCCL--ETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~-----~~~~~~~e~~~l~~l~h~niv~l~g~~~--~~~~~  124 (131)
                      .+.|...+.||+|+||.||.+..  .+..+++|.+.....     ....+.+|+.++..++|+||+++++++.  .....
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            35788899999999999999998  678899999875432     2356889999999999999999999984  45578


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        84 ~lv~e~~   90 (305)
T 2wtk_C           84 YMVMEYC   90 (305)
T ss_dssp             EEEEECC
T ss_pred             EEEehhc
Confidence            9999985

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.24  E-value=3.5e-11  Score=83.06  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+..|..++..+ +|+||+++++++...+..++
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            45677789999999999999998  6788999999754322    24577888888876 79999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       131 V~E~~  135 (396)
T 4dc2_A          131 VIEYV  135 (396)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99986

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.24  E-value=7.2e-12  Score=83.70  Aligned_cols=85  Identities=15%  Similarity=0.262  Sum_probs=70.3

Q ss_pred             HHHHHHhhcCCCcCCeeeeCCCeEEEEEEEC-------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeE
Q 040342           47 ENELKIATKNYDRQKVITTGLGYELFKGFLH-------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGC  117 (131)
Q Consensus        47 ~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~~-------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~  117 (131)
                      .++++...+.|...+.||+|+||.||++...       +..+|+|.+......  ...+.+|+.++..++|+||++++++
T Consensus        17 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   96 (322)
T 1p4o_A           17 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV   96 (322)
T ss_dssp             CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             hhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence            3455566678888999999999999998762       467999998754332  3568899999999999999999999


Q ss_pred             EEeCCeeEEEEeeC
Q 040342          118 CLETENPVLVFEYV  131 (131)
Q Consensus       118 ~~~~~~~~lv~E~~  131 (131)
                      +......++|+||+
T Consensus        97 ~~~~~~~~lv~e~~  110 (322)
T 1p4o_A           97 VSQGQPTLVIMELM  110 (322)
T ss_dssp             ECSSSSCEEEEECC
T ss_pred             EccCCccEEEEEeC
Confidence            99888999999985

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=82.78  Aligned_cols=77  Identities=14%  Similarity=0.061  Sum_probs=61.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|.....||+|+||.||++..  ++..||+|.+......   ......++..+..+ +|+|++++++++..+...++|+
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            4677788999999999999998  6889999988653322   23445555555544 8999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       137 e~~  139 (311)
T 3p1a_A          137 ELC  139 (311)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            985

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.23  E-value=5.5e-11  Score=81.22  Aligned_cols=78  Identities=23%  Similarity=0.317  Sum_probs=65.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC------
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE------  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------  122 (131)
                      .+.|.....||+|+||.||.+..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++++....      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            35677889999999999999988  7889999999753222   356889999999999999999999987654      


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       104 ~~~lv~e~~  112 (371)
T 2xrw_A          104 DVYIVMELM  112 (371)
T ss_dssp             EEEEEEECC
T ss_pred             ceEEEEEcC
Confidence            689999985

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.23  E-value=3.8e-11  Score=81.71  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~  125 (131)
                      ..++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+..|..++..+ +|+||+++++++...+..+
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            346788889999999999999998  6789999999754221    24577888999887 6999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus       101 lv~E~~  106 (353)
T 3txo_A          101 FVMEFV  106 (353)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999986

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.23  E-value=1.9e-11  Score=83.78  Aligned_cols=67  Identities=16%  Similarity=0.191  Sum_probs=53.1

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE  120 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~  120 (131)
                      +...+.|...+.||+|+||.||.+..  ++..+|+|.+......   ..+|+.++..++|+||+++++++..
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~---~~~E~~il~~l~hpnIv~l~~~~~~   71 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY---KNRELDIMKVLDHVNIIKLVDYFYT   71 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS---CCHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch---HHHHHHHHHHcCCCCccchhheeee
Confidence            34456788889999999999999988  7889999998754322   3479999999999999999998844

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.23  E-value=5.1e-11  Score=78.67  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .+.|...+.||+|+||.||++..  .+..+++|.+.....    ....+.+|+.++..++|+||+++++++...+..++|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            34567788999999999999998  577899999875421    235688999999999999999999999998999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        94 ~e~~   97 (294)
T 2rku_A           94 LELC   97 (294)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9985

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.23  E-value=3e-11  Score=81.87  Aligned_cols=84  Identities=14%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             HHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCe--
Q 040342           48 NELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETEN--  123 (131)
Q Consensus        48 ~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~--  123 (131)
                      .......++|.....||+|+||.||++..  ++..+|+|.+............++..+..++|+||+++++++.....  
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~   95 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD   95 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence            34455677899999999999999999998  67899999987654333456677778888999999999999865333  


Q ss_pred             -----eEEEEeeC
Q 040342          124 -----PVLVFEYV  131 (131)
Q Consensus       124 -----~~lv~E~~  131 (131)
                           .++|+||+
T Consensus        96 ~~~~~~~lv~e~~  108 (360)
T 3e3p_A           96 RRDIYLNVVMEYV  108 (360)
T ss_dssp             TTCEEEEEEEECC
T ss_pred             ccceeEEEEeecc
Confidence                 78999985

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.23  E-value=1.6e-11  Score=86.00  Aligned_cols=77  Identities=17%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeC-----Cee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLET-----ENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~~  124 (131)
                      +.|...+.||+|+||.||++..  .+..||+|.+......   ...+.+|+.++..++|+||+++++++...     ...
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            5678889999999999999987  6788999998653222   36688999999999999999999998543     468


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus       133 ~lv~e~~  139 (458)
T 3rp9_A          133 YVVLEIA  139 (458)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9999985

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.23  E-value=5.5e-11  Score=80.09  Aligned_cols=78  Identities=15%  Similarity=0.086  Sum_probs=66.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc----hhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD----YAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ...|...+.||+|+||.||++..  .+..+++|.+....    .....+.+|+.++..++|+||+++++++...+..++|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            45677788999999999999998  57789999987542    1235688999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       120 ~e~~  123 (335)
T 2owb_A          120 LELC  123 (335)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9985

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.23  E-value=8.8e-11  Score=77.58  Aligned_cols=78  Identities=14%  Similarity=0.195  Sum_probs=66.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----------hHHHHHHHHHHHhccC-CccccceeeEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----------AAEFCFNNIVFASQMN-HKNVIRLIGCCLE  120 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----------~~~~~~~e~~~l~~l~-h~niv~l~g~~~~  120 (131)
                      .++|.....||+|+||.||.+..  ++..+|+|.+.....          ....+.+|+.++..+. |+||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            45677789999999999999998  678999999975431          1245789999999996 9999999999998


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ....++|+||+
T Consensus        96 ~~~~~lv~e~~  106 (298)
T 1phk_A           96 NTFFFLVFDLM  106 (298)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCeEEEEEecc
Confidence            89999999985

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.22  E-value=8.9e-11  Score=78.89  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.||+|+||.||++..  .+..+|+|.+....  ...+.+|+.++..+. |+||+++++++......++|+||+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~   88 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM--EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELL   88 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG--HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChhh--hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEcc
Confidence            47799999999999998  67889999987542  345778999999997 999999999999999999999985

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.22  E-value=2.1e-11  Score=81.85  Aligned_cols=83  Identities=17%  Similarity=0.309  Sum_probs=69.0

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE--CC-----eeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEE
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL--HD-----YPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCC  118 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~-----~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~  118 (131)
                      .++...++|...+.||+|+||.||.+..  .+     ..+++|.+......  ...+.+|+.++..+ +|+||+++++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            3445567788889999999999999987  22     36999999765432  36688999999999 899999999999


Q ss_pred             EeCCeeEEEEeeC
Q 040342          119 LETENPVLVFEYV  131 (131)
Q Consensus       119 ~~~~~~~lv~E~~  131 (131)
                      ..++..++|+||+
T Consensus       120 ~~~~~~~lv~e~~  132 (333)
T 2i1m_A          120 THGGPVLVITEYC  132 (333)
T ss_dssp             CSSSSCEEEEECC
T ss_pred             ecCCceEEEEecC
Confidence            9888999999985

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.22  E-value=7.8e-11  Score=77.48  Aligned_cols=78  Identities=5%  Similarity=0.018  Sum_probs=62.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--H-HHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--A-EFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~-~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .++|.....||+|+||.||++..  .+..+|+|.+......  . ..+..+...+..++|+|++++++++...+..++|+
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            45677788999999999999998  7889999999754322  2 33444445577889999999999999989999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        86 e~~   88 (290)
T 3fme_A           86 ELM   88 (290)
T ss_dssp             ECC
T ss_pred             ehh
Confidence            985

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.22  E-value=5.5e-11  Score=80.33  Aligned_cols=78  Identities=14%  Similarity=0.160  Sum_probs=65.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeC-----Cee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET-----ENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~~  124 (131)
                      .++|.....||+|+||.||.+..  .+..+|+|.+......  ...+.+|+.++..++|+||+++++++...     ...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            45677789999999999999998  6889999999754322  35678999999999999999999987653     578


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus        90 ~lv~e~~   96 (353)
T 2b9h_A           90 YIIQELM   96 (353)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9999985

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.22  E-value=5.2e-11  Score=79.23  Aligned_cols=77  Identities=22%  Similarity=0.295  Sum_probs=60.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEE------------
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCL------------  119 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~------------  119 (131)
                      +.|...+.||+|+||.||++..  .+..+|+|.+...... ...+.+|+.++..++|+|++++++++.            
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            4677788999999999999998  5889999998765543 467889999999999999999998873            


Q ss_pred             --eCCeeEEEEeeC
Q 040342          120 --ETENPVLVFEYV  131 (131)
Q Consensus       120 --~~~~~~lv~E~~  131 (131)
                        .....++|+||+
T Consensus        91 ~~~~~~~~lv~e~~  104 (320)
T 2i6l_A           91 LTELNSVYIVQEYM  104 (320)
T ss_dssp             CCSCSEEEEEEECC
T ss_pred             ccccCceeEEeecc
Confidence              346789999985

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.22  E-value=1.8e-11  Score=82.54  Aligned_cols=82  Identities=20%  Similarity=0.360  Sum_probs=66.9

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEE
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCL  119 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~  119 (131)
                      ++...++|...+.||+|+||.||.+..       .+..+|+|.+......  ...+.+|+.++..+ +|+||+++++++.
T Consensus        40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  119 (344)
T 1rjb_A           40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT  119 (344)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            344567788889999999999999986       2357999999754322  36688999999999 8999999999999


Q ss_pred             eCCeeEEEEeeC
Q 040342          120 ETENPVLVFEYV  131 (131)
Q Consensus       120 ~~~~~~lv~E~~  131 (131)
                      ..+..++|+||+
T Consensus       120 ~~~~~~lv~e~~  131 (344)
T 1rjb_A          120 LSGPIYLIFEYC  131 (344)
T ss_dssp             SSSSCEEEEECC
T ss_pred             eCCccEEEEecC
Confidence            889999999985

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.22  E-value=2.2e-11  Score=81.19  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCe----
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETEN----  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~----  123 (131)
                      .+.|...+.||+|+||.||.+..  .+..+|+|.+......    ...+.+|+.++..++|+||+++++.+.....    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            35677789999999999999997  7889999999764322    2568899999999999999999998865443    


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus        91 ~~lv~e~~   98 (311)
T 3ork_A           91 PYIVMEYV   98 (311)
T ss_dssp             EEEEEECC
T ss_pred             cEEEEecC
Confidence            49999985

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.22  E-value=1.6e-11  Score=85.78  Aligned_cols=78  Identities=9%  Similarity=0.031  Sum_probs=60.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++|...+.||+|+||.||.+..  .+..+|+|.+.....    ....+.+|+.++..++|+||+++++++...+..++|
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            35677788999999999999998  788999999975321    124577899999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       227 ~e~~  230 (446)
T 4ejn_A          227 MEYA  230 (446)
T ss_dssp             ECCC
T ss_pred             EeeC
Confidence            9986

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.22  E-value=3.9e-11  Score=86.29  Aligned_cols=78  Identities=13%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+.+|+.++..++|+||+++++.+...+..++|
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            35577788999999999999998  7889999999754321    24578999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       263 mEy~  266 (576)
T 2acx_A          263 LTLM  266 (576)
T ss_dssp             ECCC
T ss_pred             EEcC
Confidence            9986

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.22  E-value=3.7e-11  Score=79.85  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ....++|...+.||+|+||.||.+..       .+..+|+|.+......  ...+.+|+.++..+ +|+||+++++++..
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   98 (313)
T 1t46_A           19 EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI   98 (313)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             ccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec
Confidence            34456778889999999999999984       3468999999865432  36688999999999 89999999999998


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ++..++|+||+
T Consensus        99 ~~~~~lv~e~~  109 (313)
T 1t46_A           99 GGPTLVITEYC  109 (313)
T ss_dssp             SSSCEEEEECC
T ss_pred             CCCcEEEEecC
Confidence            89999999985

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.22  E-value=4e-11  Score=80.60  Aligned_cols=78  Identities=12%  Similarity=0.118  Sum_probs=61.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCch-----hHHHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDY-----AAEFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~-----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      .++|...+.||+|+||.||.+..     .+..+|+|.+.....     ....+.+|+.++..++|+||+++++.+...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            45677789999999999999986     467899999875431     12457789999999999999999999999999


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus        96 ~~lv~e~~  103 (327)
T 3a62_A           96 LYLILEYL  103 (327)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99999985

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.21  E-value=1.3e-11  Score=82.03  Aligned_cols=80  Identities=21%  Similarity=0.257  Sum_probs=67.1

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      ....+|...+.||+|+||.||++..       .+..+|+|.+......  ...+.+|+.++..++|+||+++++++...+
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   99 (314)
T 2ivs_A           20 FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG   99 (314)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             cchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC
Confidence            3456677788999999999999986       2367999998754322  366889999999999999999999999888


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       100 ~~~lv~e~~  108 (314)
T 2ivs_A          100 PLLLIVEYA  108 (314)
T ss_dssp             SCEEEEECC
T ss_pred             ceEEEEeec
Confidence            999999985

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.21  E-value=4.9e-11  Score=82.76  Aligned_cols=78  Identities=21%  Similarity=0.210  Sum_probs=64.5

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---------HHHHHHHHHHHhccCCccccceeeEEEeC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---------AEFCFNNIVFASQMNHKNVIRLIGCCLET  121 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---------~~~~~~e~~~l~~l~h~niv~l~g~~~~~  121 (131)
                      ..+.|...+.||+|+||.||++..  .+..+|+|.+......         ...+.+|+.++..++|+||+++++++. .
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence            356788889999999999999998  6789999998753211         134789999999999999999999875 5


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..++|+||+
T Consensus       212 ~~~~lv~e~~  221 (419)
T 3i6u_A          212 EDYYIVLELM  221 (419)
T ss_dssp             SEEEEEEECC
T ss_pred             CceEEEEEcC
Confidence            6689999986

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.21  E-value=9.1e-11  Score=76.83  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe--CCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~l  126 (131)
                      .++|.....||+|+||.||++..  ++..+++|.+......   ...+.+|+.++..++|+||+++++.+..  ....++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            34677788999999999999998  6788999999754322   3568899999999999999999998754  568899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        85 v~e~~   89 (279)
T 2w5a_A           85 VMEYC   89 (279)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99985

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.21  E-value=6.3e-11  Score=78.03  Aligned_cols=78  Identities=12%  Similarity=0.139  Sum_probs=67.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .+.|.....||+|+||.||.+..  ++..+++|.+.....   ....+.+|+.++..++|+||+++++.+......++|+
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            45678889999999999999998  678899999875432   2466889999999999999999999999889999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       101 e~~  103 (287)
T 2wei_A          101 ELY  103 (287)
T ss_dssp             CCC
T ss_pred             Ecc
Confidence            985

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.21  E-value=6.1e-11  Score=80.99  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=65.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCee----
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENP----  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~----  124 (131)
                      .+.|.....||+|+||.||++..  .+..+|+|.+......   ...+.+|+.++..++|+||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            35677788999999999999998  7889999999754322   36688999999999999999999999776554    


Q ss_pred             --EEEEeeC
Q 040342          125 --VLVFEYV  131 (131)
Q Consensus       125 --~lv~E~~  131 (131)
                        ++|+||+
T Consensus       121 ~~~lv~e~~  129 (371)
T 4exu_A          121 DFYLVMPFM  129 (371)
T ss_dssp             CCEEEEECC
T ss_pred             eEEEEEccc
Confidence              9999985

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.21  E-value=4.3e-11  Score=79.77  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=63.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEe----CCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLE----TENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~----~~~~~l  126 (131)
                      .++|...+.||+|+||.||.+..  .+..+|+|.+...... ...+.+|+.++..++|+||+++++++..    ....++
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            45688889999999999999998  7889999988754433 4678899999999999999999999862    347889


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       108 v~e~~  112 (317)
T 2buj_A          108 LLPFF  112 (317)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99985

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.20  E-value=6.5e-11  Score=78.81  Aligned_cols=78  Identities=15%  Similarity=0.234  Sum_probs=62.3

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ..+.|...+.||+|+||.||.+..  ++..+++|.+.... ....+.+|+.++..++|+|++++++.+...+..++|+||
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  105 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEY  105 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeec
Confidence            345677888999999999999998  58899999987643 235688999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       106 ~  106 (314)
T 3com_A          106 C  106 (314)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.20  E-value=9e-11  Score=79.87  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeC-----Cee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET-----ENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~-----~~~  124 (131)
                      ...|.....||+|+||.||.+..  ++..+|+|.+......  ...+.+|+.++..++|+||+++++++...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            35677889999999999999988  7888999999754333  36788999999999999999999998654     368


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus       106 ~iv~e~~  112 (364)
T 3qyz_A          106 YIVQDLM  112 (364)
T ss_dssp             EEEEECC
T ss_pred             EEEEccc
Confidence            9999985

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.20  E-value=4.2e-11  Score=80.30  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=64.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      ..++|.....||+|+||.||++..       .+..+|+|.+......  ...+.+|+.++..++|+||+++++++.....
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  107 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence            346788889999999999999983       4557999998754322  3568899999999999999999999998889


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus       108 ~~lv~e~~  115 (327)
T 2yfx_A          108 RFILMELM  115 (327)
T ss_dssp             CEEEEECC
T ss_pred             cEEEEecC
Confidence            99999985

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.20  E-value=4.2e-11  Score=81.13  Aligned_cols=75  Identities=16%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .+.|...+.||+|+||.||.+..  .+..+|+|.+.....   ...+|+.++..+ +|+||+++++++..+...++|+||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~   97 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTEL   97 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeC
Confidence            45677788999999999999998  688999999976432   235677788777 699999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        98 ~   98 (342)
T 2qr7_A           98 M   98 (342)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.20  E-value=6.3e-11  Score=81.27  Aligned_cols=79  Identities=20%  Similarity=0.356  Sum_probs=57.7

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc---hhHHHHHHHHHHHhccC-CccccceeeEEEeCC--ee
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD---YAAEFCFNNIVFASQMN-HKNVIRLIGCCLETE--NP  124 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~---~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~--~~  124 (131)
                      ..+.|.....||+|+||.||++..  .+..||+|.+....   .....+.+|+.++..+. |+||+++++++...+  ..
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            346788889999999999999988  78899999986432   12356789999999997 999999999997544  68


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        87 ~lv~e~~   93 (388)
T 3oz6_A           87 YLVFDYM   93 (388)
T ss_dssp             EEEEECC
T ss_pred             EEEeccc
Confidence            9999986

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.19  E-value=7.6e-11  Score=79.38  Aligned_cols=77  Identities=29%  Similarity=0.377  Sum_probs=63.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--C----CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--H----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ..|...+.||+|+||.||++..  .    +..+|+|.+......  ...+.+|+.++..++|+||+++++++......++
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            3455568899999999999987  2    235999999764322  3568899999999999999999999998889999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       124 v~e~~  128 (333)
T 1mqb_A          124 ITEYM  128 (333)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99985

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.19  E-value=1.2e-10  Score=79.38  Aligned_cols=79  Identities=18%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch-----h----HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY-----A----AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~-----~----~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ..+.|.....||+|+||.||++..  +|..||+|.+.....     .    ...+.+|+.++..+ +|+||+++++++..
T Consensus        92 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  171 (365)
T 2y7j_A           92 FYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYES  171 (365)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEB
T ss_pred             hhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEee
Confidence            345677788999999999999998  688999999875431     1    24578899999998 79999999999998


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ....++|+||+
T Consensus       172 ~~~~~lv~e~~  182 (365)
T 2y7j_A          172 SSFMFLVFDLM  182 (365)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCEEEEEEEeC
Confidence            99999999986

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.19  E-value=6.9e-11  Score=81.00  Aligned_cols=79  Identities=15%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-C--------CeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-H--------DYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~--------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ..+.|...+.||+|+||.||++.. .        +..+|+|.+......  ...+.+|+.++..+ +|+||+++++++..
T Consensus        67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            345677788999999999999986 1        246999999765333  36688999999999 89999999999999


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      .+..++|+||+
T Consensus       147 ~~~~~lv~e~~  157 (382)
T 3tt0_A          147 DGPLYVIVEYA  157 (382)
T ss_dssp             SSSCEEEEECC
T ss_pred             CCceEEEEEec
Confidence            88999999985

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.19  E-value=1e-10  Score=77.36  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeC--Cee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~  124 (131)
                      ..|...+.||+|+||.||.+.+      .+..+|+|.+......  ...+.+|+.++..++|+|++++++++...  ...
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            3466678999999999999983      6788999998754322  36688999999999999999999998765  668


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus       101 ~lv~e~~  107 (302)
T 4e5w_A          101 KLIMEFL  107 (302)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999985

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.19  E-value=6.3e-11  Score=84.75  Aligned_cols=77  Identities=10%  Similarity=0.044  Sum_probs=66.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||.+..  ++..+|+|.+......    ...+..|+.++..++|+||+++++++......++|+
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            4566678899999999999998  6889999999754322    256789999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       265 E~~  267 (543)
T 3c4z_A          265 TIM  267 (543)
T ss_dssp             CCC
T ss_pred             Eec
Confidence            986

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.19  E-value=1.3e-10  Score=77.89  Aligned_cols=79  Identities=19%  Similarity=0.271  Sum_probs=62.9

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhc--cCCccccceeeEEEeC----Cee
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQ--MNHKNVIRLIGCCLET----ENP  124 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~g~~~~~----~~~  124 (131)
                      ....+.|...+.||+|+||.||++...+..+|+|.+.....  ..+..+..++..  ++|+||+++++.+...    ...
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~--~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  110 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEE--ASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL  110 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred             cccccceEEEeEeecCCCeEEEEEEECCceEEEEEEecccc--chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence            34456788899999999999999988889999999875432  234455555554  4899999999999876    688


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus       111 ~lv~e~~  117 (337)
T 3mdy_A          111 YLITDYH  117 (337)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9999985

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.19  E-value=1.8e-10  Score=77.03  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=62.6

Q ss_pred             CCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe--CCeeEE
Q 040342           57 YDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVL  126 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~l  126 (131)
                      |...+.||+|+||.||.+.+      .+..+|+|.+......  ...+.+|+.++..++|+||+++++++..  ....++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            46678999999999998865      5678999999865322  3668999999999999999999999987  457899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       113 v~e~~  117 (318)
T 3lxp_A          113 VMEYV  117 (318)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            99985

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.18  E-value=1.2e-10  Score=78.00  Aligned_cols=77  Identities=12%  Similarity=0.087  Sum_probs=64.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEE--eCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCL--ETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~--~~~~~~  125 (131)
                      ++|...+.||+|+||.||.+.+      .+..+|+|.+...... ...+.+|+.++..++|+||+++++++.  .....+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            4567788999999999999983      5678999999866544 466899999999999999999999886  355688


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus       103 lv~e~~  108 (327)
T 3lxl_A          103 LVMEYL  108 (327)
T ss_dssp             EEEECC
T ss_pred             EEEeec
Confidence            999985

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.18  E-value=4.6e-11  Score=80.81  Aligned_cols=78  Identities=23%  Similarity=0.348  Sum_probs=64.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe--------
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE--------  120 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~--------  120 (131)
                      .+.|...+.||+|+||.||.+..  ++..+|+|.+......   ...+.+|+.++..++|+||+++++.+..        
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            35677788999999999999998  7789999988654322   2567899999999999999999999876        


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ....++|+||+
T Consensus        96 ~~~~~lv~e~~  106 (351)
T 3mi9_A           96 KGSIYLVFDFC  106 (351)
T ss_dssp             -CEEEEEEECC
T ss_pred             CceEEEEEecc
Confidence            34689999985

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.18  E-value=1.2e-10  Score=78.10  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=63.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCee--EEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYP--VSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~--vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|.....||+|+||.||++..  .+..  +++|.+......  ...+.+|+.++..+ +|+||+++++++...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            5677788999999999999988  5654  488988753322  35688999999999 899999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       105 ~e~~  108 (327)
T 1fvr_A          105 IEYA  108 (327)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9985

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.18  E-value=4.7e-11  Score=79.55  Aligned_cols=74  Identities=24%  Similarity=0.362  Sum_probs=62.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||++...+..+|+|.+.... ....+.+|+.++..++|+||+++++.+.  +..++|+||+
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~   81 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESES-ERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA   81 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEECSSTT-HHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred             hHeeeeeEeecCCCceEEEEEECCeeEEEEEecChh-HHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence            345667889999999999999877889999986533 3466889999999999999999999875  4589999985

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.18  E-value=1.9e-11  Score=82.52  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=66.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---------hHHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---------AAEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---------~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      .+.|.....||+|+||.||++..  .+..+|+|.+.....         ....+.+|+.++..++|+||+++++++...+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            35677889999999999999987  788999999976431         1234678999999999999999999999999


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       103 ~~~lv~e~~  111 (335)
T 3dls_A          103 FFQLVMEKH  111 (335)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEeC
Confidence            999999974

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.17  E-value=3.4e-10  Score=76.10  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=66.4

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhc--cCCccccceeeEEEeCC----e
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQ--MNHKNVIRLIGCCLETE----N  123 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~g~~~~~~----~  123 (131)
                      .....++|...+.||+|+||.||++...+..+|+|.+....  ...+..|..++..  ++|+||+++++.+....    .
T Consensus        37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~  114 (342)
T 1b6c_B           37 QRTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE--ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ  114 (342)
T ss_dssp             HHHHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGGG--HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred             cccccccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCchh--HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence            34456788889999999999999999888999999987543  3456788888776  78999999999998765    7


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus       115 ~~lv~e~~  122 (342)
T 1b6c_B          115 LWLVSDYH  122 (342)
T ss_dssp             EEEEECCC
T ss_pred             eEEEEeec
Confidence            89999985

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.17  E-value=1.1e-10  Score=79.07  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=64.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCe------
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETEN------  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~------  123 (131)
                      ..|.....||+|+||.||.+..  .|..+|+|.+......   ...+.+|+.++..++|+||+++++++.....      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            4677788999999999999998  7889999999754322   3568899999999999999999999976543      


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus       104 ~~lv~e~~  111 (353)
T 3coi_A          104 FYLVMPFM  111 (353)
T ss_dssp             CEEEEECC
T ss_pred             EEEEeccc
Confidence            49999985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.17  E-value=1.5e-10  Score=77.50  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=64.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEe--CCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLE--TENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~--~~~~~lv~E  129 (131)
                      ++|...+.||+|+||.||++..  .+..+|+|.+....  ...+.+|+.++..++ |+||+++++++..  ....++|+|
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e  113 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE  113 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC--HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc--hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEe
Confidence            4577788999999999999987  77899999987543  356889999999997 9999999999987  567899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       114 ~~  115 (330)
T 3nsz_A          114 HV  115 (330)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.17  E-value=1.2e-10  Score=78.00  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=61.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---------HHHHHHHHHHHhccCCccccceeeEEEeCC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---------AEFCFNNIVFASQMNHKNVIRLIGCCLETE  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~  122 (131)
                      .+.|...+.||+|+||.||++..  .+..+|+|.+......         ...+.+|+.++..++|+||+++++++... 
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-   87 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-   87 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC-
Confidence            34677789999999999999998  6789999998653211         13478999999999999999999998654 


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus        88 ~~~lv~e~~   96 (322)
T 2ycf_A           88 DYYIVLELM   96 (322)
T ss_dssp             SEEEEEECC
T ss_pred             ceEEEEecC
Confidence            489999985

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.17  E-value=2.2e-10  Score=75.42  Aligned_cols=75  Identities=21%  Similarity=0.284  Sum_probs=61.2

Q ss_pred             CCCcCC-eeeeCCCeEEEEEEE----CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           56 NYDRQK-VITTGLGYELFKGFL----HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        56 ~~~~~~-~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +|.... .||+|+||.||++..    .+..+|+|.+......  ...+.+|+.++..++|+||+++++++ ..+..++|+
T Consensus        10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~   88 (287)
T 1u59_A           10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVM   88 (287)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEE
T ss_pred             HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEE
Confidence            333344 899999999999985    4667999999864322  46788999999999999999999999 556789999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        89 e~~   91 (287)
T 1u59_A           89 EMA   91 (287)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            985

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.17  E-value=1.7e-10  Score=76.05  Aligned_cols=75  Identities=16%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe----CCeeEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE----TENPVLV  127 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~----~~~~~lv  127 (131)
                      |.....||+|+||.||++..  .+..+++|.+......   ...+.+|+.++..++|+||+++++++..    ....++|
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence            44566899999999999998  6778999998754322   3668899999999999999999998865    3568999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       108 ~e~~  111 (290)
T 1t4h_A          108 TELM  111 (290)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9985

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.17  E-value=1.4e-10  Score=76.23  Aligned_cols=78  Identities=17%  Similarity=0.267  Sum_probs=63.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-C----CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-H----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      ..+.|...+.||+|+||.||++.. .    +..+++|.+......  ...+.+|+.++..++|+||+++++++. .+..+
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~   91 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   91 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence            345677788999999999999987 2    346899988754322  356889999999999999999999884 56789


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        92 lv~e~~   97 (281)
T 1mp8_A           92 IIMELC   97 (281)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999985

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.17  E-value=4.1e-11  Score=81.82  Aligned_cols=78  Identities=19%  Similarity=0.247  Sum_probs=58.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC------
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE------  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------  122 (131)
                      .+.|.....||+|+||.||.+..  ++..||+|.+......   ...+.+|+.++..++|+||+++++++....      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            35677788999999999999998  7889999998643222   356889999999999999999999987653      


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..++|+||+
T Consensus       104 ~~~lv~e~~  112 (367)
T 1cm8_A          104 DFYLVMPFM  112 (367)
T ss_dssp             CCEEEEECC
T ss_pred             eEEEEEecC
Confidence            459999985

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.17  E-value=2e-10  Score=79.99  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc------CCccccceeeEEEeCCeeE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM------NHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l------~h~niv~l~g~~~~~~~~~  125 (131)
                      ...|...+.||+|+||.||++..  .+..||+|.+.........+..|+.++..+      .|+|++.+++.+......+
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~  175 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC  175 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence            34577788999999999999988  678999999987654456677888887766      5679999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus       176 lv~e~~  181 (429)
T 3kvw_A          176 MTFELL  181 (429)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            999985

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.17  E-value=7.1e-11  Score=78.57  Aligned_cols=87  Identities=11%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             ecHHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccce
Q 040342           45 FHENELKIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRL  114 (131)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l  114 (131)
                      +...++....+.|...+.||+|+||.||++..       .+..+|+|.+......  ...+.+|+.++..+ +|+||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34455666677888899999999999999974       3468999999764433  35688999999999 69999999


Q ss_pred             eeEEEeCC-eeEEEEeeC
Q 040342          115 IGCCLETE-NPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~~-~~~lv~E~~  131 (131)
                      ++.+...+ ..++|+||+
T Consensus        97 ~~~~~~~~~~~~lv~e~~  114 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFC  114 (316)
T ss_dssp             EEEECCTTSCCEEEEECC
T ss_pred             EEEEecCCCceEEEEEcC
Confidence            99987644 589999985

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.17  E-value=8.6e-11  Score=77.03  Aligned_cols=77  Identities=21%  Similarity=0.292  Sum_probs=63.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeC-CeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLET-ENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~-~~~~lv~E~~  131 (131)
                      .++|...+.||+|+||.||.+...+..+++|.+.... ....+.+|+.++..++|+|++++++.+... +..++|+||+
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   97 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   97 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             hhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchh-HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence            4567778899999999999998888899999987543 346688999999999999999999987543 4789999985

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.17  E-value=2.2e-10  Score=75.66  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=60.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhc--cCCccccceeeEEEe----CCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQ--MNHKNVIRLIGCCLE----TENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~g~~~~----~~~~~lv  127 (131)
                      .++|...+.||+|+||.||++...+..+|+|.+....  ...+..|..++..  ++|+||+++++.+..    ....++|
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv   84 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRD--EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLI   84 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGGG--HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEECCEEEEEEEecccc--chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEe
Confidence            4567788999999999999998888999999987543  2345556666655  789999999998754    2457899


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        85 ~e~~   88 (301)
T 3q4u_A           85 THYH   88 (301)
T ss_dssp             ECCC
T ss_pred             hhhc
Confidence            9985

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.17  E-value=7.5e-11  Score=77.83  Aligned_cols=77  Identities=21%  Similarity=0.279  Sum_probs=60.5

Q ss_pred             hcCCCcCC-eeeeCCCeEEEEEEE----CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           54 TKNYDRQK-VITTGLGYELFKGFL----HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        54 ~~~~~~~~-~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      ...|.... .||+|+||.||++.+    .+..+++|.+......   ...+.+|+.++..++|+||+++++++ ..+..+
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            34555556 899999999999965    3568999998754322   36688999999999999999999998 567789


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        94 lv~e~~   99 (291)
T 1xbb_A           94 LVMEMA   99 (291)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999985

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.17  E-value=1.3e-11  Score=81.64  Aligned_cols=81  Identities=19%  Similarity=0.253  Sum_probs=54.8

Q ss_pred             HHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           51 KIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        51 ~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ....++|...+.||+|+||.||.+..  .+..+|+|.+......  ...+.+|+.++..++|+||+++++.+...+..++
T Consensus        11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   90 (303)
T 2vwi_A           11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL   90 (303)
T ss_dssp             --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred             ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence            34567888899999999999999987  6788999988654322  3567899999999999999999999998889999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        91 v~e~~   95 (303)
T 2vwi_A           91 VMKLL   95 (303)
T ss_dssp             EEECC
T ss_pred             Eehhc
Confidence            99985

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.17  E-value=6.8e-11  Score=79.41  Aligned_cols=76  Identities=18%  Similarity=0.020  Sum_probs=65.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||.+..  .+..+|+|.+..... ...+..|+.++..+ +|+||+.+++++..+...++|+||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC
Confidence            5677788999999999999997  788999999875432 24588999999999 8999999999999999999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=9.8e-11  Score=85.71  Aligned_cols=78  Identities=19%  Similarity=0.318  Sum_probs=65.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCe-----
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETEN-----  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~-----  123 (131)
                      .+.|.....||+|+||.||.+..   ++..|++|.+......  ...+.+|+.++..++|+||+++++++...+.     
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            46788889999999999999987   4788999988654322  3568899999999999999999999987554     


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .+||+||+
T Consensus       159 ~~lv~E~~  166 (681)
T 2pzi_A          159 GYIVMEYV  166 (681)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEEeC
Confidence            69999986

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.15  E-value=9.8e-11  Score=78.75  Aligned_cols=79  Identities=15%  Similarity=0.238  Sum_probs=65.7

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE---------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL---------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~---------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ..++|...+.||+|+||.||.+..         .+..+|+|.+......  ...+.+|+.++..+ +|+||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            456777889999999999999986         2356999998764332  36688999999999 89999999999998


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      .+..++|+||+
T Consensus       113 ~~~~~lv~e~~  123 (334)
T 2pvf_A          113 DGPLYVIVEYA  123 (334)
T ss_dssp             SSCCEEEEECC
T ss_pred             CCceEEEEECC
Confidence            88999999985

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.15  E-value=1e-10  Score=80.05  Aligned_cols=78  Identities=13%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC--------CccccceeeEEE----
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN--------HKNVIRLIGCCL----  119 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~l~g~~~----  119 (131)
                      .+.|...+.||+|+||.||++..  .+..+|+|.+.........+.+|+.++..++        |+|++++++.+.    
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~  115 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV  115 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence            35678889999999999999987  6889999999866544567889999998875        788999999887    


Q ss_pred             eCCeeEEEEeeC
Q 040342          120 ETENPVLVFEYV  131 (131)
Q Consensus       120 ~~~~~~lv~E~~  131 (131)
                      .....++|+||+
T Consensus       116 ~~~~~~lv~e~~  127 (397)
T 1wak_A          116 NGTHICMVFEVL  127 (397)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CCceEEEEEecc
Confidence            455789999985

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.15  E-value=2.5e-10  Score=83.10  Aligned_cols=70  Identities=21%  Similarity=0.291  Sum_probs=58.5

Q ss_pred             CeeeeCCCeEEEEEEE----CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL----HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||+|.+    .+..+|+|.+......   ...+.+|+.++..++|+||+++++++. .+..++|+||+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~  451 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMA  451 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECC
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEcc
Confidence            3699999999999976    3467999999764332   367999999999999999999999986 45688999986

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.15  E-value=1.9e-10  Score=83.35  Aligned_cols=69  Identities=22%  Similarity=0.301  Sum_probs=58.5

Q ss_pred             eeeeCCCeEEEEEEE----CCeeEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGYELFKGFL----HDYPVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .||+|+||.||+|.+    .+..||+|.++....  ....+.+|+.+|..++|+||+++++++.. +..++|+||+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~  417 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMA  417 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeC
Confidence            699999999999987    345699999976432  24679999999999999999999999865 6689999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.15  E-value=1.3e-10  Score=77.61  Aligned_cols=80  Identities=14%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCe---eEEEEEEecCc---hhHHHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDY---PVSIMKFVNSD---YAAEFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~---~vavk~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      ...++|...+.||+|+||.||++..  .+.   .+|+|.+....   .....+.+|+.++..++|+||+++++++.....
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            3456788889999999999999987  332   78999987542   224678999999999999999999999976554


Q ss_pred             e------EEEEeeC
Q 040342          124 P------VLVFEYV  131 (131)
Q Consensus       124 ~------~lv~E~~  131 (131)
                      .      ++++||+
T Consensus       100 ~~~~~~~~~v~e~~  113 (323)
T 3qup_A          100 KGRLPIPMVILPFM  113 (323)
T ss_dssp             -----CEEEEEECC
T ss_pred             ccCCCccEEEEEec
Confidence            4      8999985

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.15  E-value=1.3e-10  Score=78.57  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=65.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---HHHHHHHHHHHhccCC--ccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNH--KNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h--~niv~l~g~~~~~~~~~lv~  128 (131)
                      ..|...+.||+|+||.||++.. .+..+|+|.+......   ...+.+|+.++..++|  +||+++++++..+...+||+
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            4567788999999999999988 7788999998754322   3668899999999986  99999999999999999999


Q ss_pred             ee
Q 040342          129 EY  130 (131)
Q Consensus       129 E~  130 (131)
                      |+
T Consensus        89 e~   90 (343)
T 3dbq_A           89 EC   90 (343)
T ss_dssp             CC
T ss_pred             eC
Confidence            96

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.14  E-value=1.4e-10  Score=77.87  Aligned_cols=79  Identities=14%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             hhcCCCcC-CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccC-CccccceeeEEEeCCeeE
Q 040342           53 ATKNYDRQ-KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPV  125 (131)
Q Consensus        53 ~~~~~~~~-~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~  125 (131)
                      ..+.|... +.||+|+||.||++..  ++..+|+|.+......   ...+.+|+.++..+. |+||+++++++......+
T Consensus        26 ~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~  105 (327)
T 3lm5_A           26 FNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEII  105 (327)
T ss_dssp             HHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEE
Confidence            33444444 7899999999999998  6889999998754322   366889999999885 699999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus       106 lv~e~~  111 (327)
T 3lm5_A          106 LILEYA  111 (327)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            999985

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=77.35  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE------CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeC--Cee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL------HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLET--ENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~------~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~--~~~  124 (131)
                      ...|...+.||+|+||.||.+.+      .+..+|+|.+...... ...+.+|+.++..++|+||+++++.+...  ...
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            34566788999999999999984      5778999999765433 46789999999999999999999988654  378


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus       120 ~lv~e~~  126 (326)
T 2w1i_A          120 KLIMEYL  126 (326)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9999985

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.14  E-value=1.4e-10  Score=78.97  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=65.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++|.....||+|+||.||.+..  ++..+|+|.+.....    ....+..|..++..+ +|++|+++++++...+..++
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   98 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   98 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence            46788889999999999999998  567899999975432    135577888999887 69999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        99 v~E~~  103 (353)
T 2i0e_A           99 VMEYV  103 (353)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99985

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=76.74  Aligned_cols=78  Identities=8%  Similarity=0.151  Sum_probs=57.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--H-HHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--A-EFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~-~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .++|.....||+|+||.||.+..  ++..+|+|.+......  . ..+..+..++..++|+||+++++++...+..++|+
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            45677788999999999999998  6889999999765432  2 33444445677889999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       104 e~~  106 (318)
T 2dyl_A          104 ELM  106 (318)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            985

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.13  E-value=7.5e-12  Score=84.28  Aligned_cols=65  Identities=20%  Similarity=0.239  Sum_probs=50.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---------HHHHHHHHHHHhccC---------Ccccccee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---------AEFCFNNIVFASQMN---------HKNVIRLI  115 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---------~~~~~~e~~~l~~l~---------h~niv~l~  115 (131)
                      .++|...+.||+|+||.||++...+..||+|.+......         ...+.+|+.++..++         |+|++++.
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             cccchheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            345677889999999999999988899999999754211         256888998888775         77777776


Q ss_pred             eEE
Q 040342          116 GCC  118 (131)
Q Consensus       116 g~~  118 (131)
                      +.+
T Consensus        99 ~~~  101 (336)
T 2vuw_A           99 SVH  101 (336)
T ss_dssp             EEE
T ss_pred             cee
Confidence            654

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.13  E-value=1.7e-10  Score=77.26  Aligned_cols=78  Identities=9%  Similarity=0.179  Sum_probs=64.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccC-CccccceeeEEEe--------C
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMN-HKNVIRLIGCCLE--------T  121 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~-h~niv~l~g~~~~--------~  121 (131)
                      ..+|.....||+|+||.||++..  .+..+|+|.+...... ...+.+|+.++..+. |+||+++++++..        .
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            45677789999999999999998  7889999988655433 467889999999996 9999999999843        3


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      ...++++||+
T Consensus       107 ~~~~lv~e~~  116 (337)
T 3ll6_A          107 AEFLLLTELC  116 (337)
T ss_dssp             EEEEEEEECC
T ss_pred             ceEEEEEEec
Confidence            3578999985

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.13  E-value=1.1e-10  Score=76.80  Aligned_cols=76  Identities=25%  Similarity=0.349  Sum_probs=62.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---H-----HHHHHHHHHHhccCCccccceeeEEEeCCe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---A-----EFCFNNIVFASQMNHKNVIRLIGCCLETEN  123 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~-----~~~~~e~~~l~~l~h~niv~l~g~~~~~~~  123 (131)
                      .+.|...+.||+|+||.||++..  ++..+|+|.+......   .     ..+.+|+.++..++|+||+++++.+...  
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--   95 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP--   95 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT--
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC--
Confidence            35677788999999999999998  7788999998653322   1     5688999999999999999999998544  


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus        96 ~~lv~e~~  103 (287)
T 4f0f_A           96 PRMVMEFV  103 (287)
T ss_dssp             TEEEEECC
T ss_pred             CeEEEEec
Confidence            47899985

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.12  E-value=2.1e-10  Score=78.94  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=64.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---HHHHHHHHHHHhccC--CccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMN--HKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~--h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ..|...+.||+|+||.||++.. .+..+|+|.+......   ...+.+|+.++..++  |+||+++++++...+..+||+
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            3477788999999999999988 7788999998754322   366899999999996  599999999999999999999


Q ss_pred             ee
Q 040342          129 EY  130 (131)
Q Consensus       129 E~  130 (131)
                      |+
T Consensus       136 E~  137 (390)
T 2zmd_A          136 EC  137 (390)
T ss_dssp             EC
T ss_pred             ec
Confidence            96

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.11  E-value=9.7e-11  Score=80.26  Aligned_cols=78  Identities=10%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHH-HhccCCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVF-ASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~-l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++|...+.||+|+||.||.+..  .+..+|+|.+......    ...+..|..+ +..++|+||+++++.+...+..++
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            35677789999999999999998  6778999999754321    2345566665 567889999999999999999999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       117 v~E~~  121 (373)
T 2r5t_A          117 VLDYI  121 (373)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99986

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.11  E-value=2.3e-10  Score=76.02  Aligned_cols=79  Identities=23%  Similarity=0.303  Sum_probs=60.7

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh------HHHHHHHHHHHhccC---CccccceeeEEEeC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA------AEFCFNNIVFASQMN---HKNVIRLIGCCLET  121 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~------~~~~~~e~~~l~~l~---h~niv~l~g~~~~~  121 (131)
                      ..+.|.....||+|+||.||++..  .+..+|+|.+......      ...+.+|+.++..+.   |+||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            356788899999999999999997  7788999998643211      245667777777664   99999999999765


Q ss_pred             C-----eeEEEEeeC
Q 040342          122 E-----NPVLVFEYV  131 (131)
Q Consensus       122 ~-----~~~lv~E~~  131 (131)
                      .     ..++++||+
T Consensus        87 ~~~~~~~~~lv~e~~  101 (308)
T 3g33_A           87 RTDREIKVTLVFEHV  101 (308)
T ss_dssp             CSSSEEEEEEEEECC
T ss_pred             CCCCceeEEEEehhh
Confidence            4     478999985

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.11  E-value=1.5e-10  Score=79.11  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch---hHHHHHHHHHHHhccCCccccceeeEEEeC------Ce
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY---AAEFCFNNIVFASQMNHKNVIRLIGCCLET------EN  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~~  123 (131)
                      +.|.....||+|+||.||++..  .+..||+|.+.....   ....+.+|+.++..++|+||+++++++...      ..
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~  108 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND  108 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCe
Confidence            5677889999999999999987  788999999865322   235688999999999999999999998653      46


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus       109 ~~lv~e~~  116 (367)
T 2fst_X          109 VYLVTHLM  116 (367)
T ss_dssp             CEEEEECC
T ss_pred             EEEEeccc
Confidence            78999875

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.11  E-value=2.9e-10  Score=75.05  Aligned_cols=75  Identities=21%  Similarity=0.290  Sum_probs=59.8

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCee-EEEE
Q 040342           57 YDRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENP-VLVF  128 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~-~lv~  128 (131)
                      |...+.||+|+||.||++..  .+   ..+|+|.+......  ...+.+|+.++..++|+||+++++++...+.. ++++
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            34457899999999999986  22   26899998754432  36788999999999999999999999765544 8999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       103 e~~  105 (298)
T 3pls_A          103 PYM  105 (298)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            874

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.10  E-value=3.6e-10  Score=77.97  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=54.6

Q ss_pred             CCeeeeCCCeEEEEEEE----CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe--CCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL----HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~lv~E~~  131 (131)
                      ...||+|+||.||++..    .+..+|+|.+..... ...+.+|+.++..++|+||+++++++..  ....+||+||+
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~  102 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA  102 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECC
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCC
Confidence            45799999999999986    356899999875432 2457899999999999999999999964  66899999985

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.10  E-value=2.1e-10  Score=77.07  Aligned_cols=76  Identities=20%  Similarity=0.404  Sum_probs=57.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ++|...+.||+|+||.||++..  .+.    .+++|.+......  ...+.+|+.++..++|+||+++++++..+. .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence            4577788999999999999987  333    3688877643322  467899999999999999999999997654 678


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        94 v~e~~   98 (327)
T 3poz_A           94 ITQLM   98 (327)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            88875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.10  E-value=1.7e-10  Score=80.02  Aligned_cols=73  Identities=25%  Similarity=0.320  Sum_probs=59.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeC------CeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLET------ENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~~~~lv  127 (131)
                      .|...+.||+|+||.||++..  .+..||+|.+.....   ...+|+.++..++|+||+++++++...      ...++|
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv  131 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV  131 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEee
Confidence            466778999999999999998  688999999875432   234799999999999999999988542      136789


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       132 ~e~~  135 (420)
T 1j1b_A          132 LDYV  135 (420)
T ss_dssp             EECC
T ss_pred             hhcc
Confidence            9985

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.09  E-value=5.4e-10  Score=73.67  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=63.4

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ...+.|...+.||+|+||.||++...+ .+|+|.+......   ...+.+|+.++..++|+|++.+++++ .....++|+
T Consensus        21 i~~~~y~~~~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~   98 (289)
T 3og7_A           21 IPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT   98 (289)
T ss_dssp             CCTTSCEEEEEEEECSSEEEEEEESSS-EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred             cCccceeeeeEecCCCCeEEEEEEEcC-ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence            445678888999999999999998743 4899998754322   36689999999999999999999966 456689999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        99 e~~  101 (289)
T 3og7_A           99 QWC  101 (289)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            985

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.09  E-value=2.3e-10  Score=75.01  Aligned_cols=74  Identities=16%  Similarity=0.251  Sum_probs=62.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe------------
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE------------  120 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~------------  120 (131)
                      .+|...+.||+|+||.||.+..  ++..+++|.+....   ..+.+|+.++..++|+|++++++++..            
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~   87 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNS   87 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--------
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccc
Confidence            4577788999999999999998  68899999987654   346789999999999999999998754            


Q ss_pred             ----CCeeEEEEeeC
Q 040342          121 ----TENPVLVFEYV  131 (131)
Q Consensus       121 ----~~~~~lv~E~~  131 (131)
                          ....++|+||+
T Consensus        88 ~~~~~~~~~lv~e~~  102 (284)
T 2a19_B           88 SRSKTKCLFIQMEFC  102 (284)
T ss_dssp             -CCEEEEEEEEECCC
T ss_pred             cccCcceEEEEEecc
Confidence                34578999985

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.09  E-value=3.1e-10  Score=77.59  Aligned_cols=77  Identities=5%  Similarity=0.069  Sum_probs=57.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCc----hhHHHHHHHH---HHHhccCCcccccee-------eEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSD----YAAEFCFNNI---VFASQMNHKNVIRLI-------GCC  118 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~----~~~~~~~~e~---~~l~~l~h~niv~l~-------g~~  118 (131)
                      +.|...+.||+|+||.||++..  ++..+|+|.+....    .....+.+|+   .++..++|+||++++       +++
T Consensus        73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~  152 (377)
T 3byv_A           73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  152 (377)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEE
T ss_pred             ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhh
Confidence            4456678899999999999997  68899999997432    1236688999   455566799999988       554


Q ss_pred             EeCC-----------------eeEEEEeeC
Q 040342          119 LETE-----------------NPVLVFEYV  131 (131)
Q Consensus       119 ~~~~-----------------~~~lv~E~~  131 (131)
                      ...+                 ..+|+|||+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~  182 (377)
T 3byv_A          153 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM  182 (377)
T ss_dssp             ECTTSCSEEEC------CEEESEEEEEECC
T ss_pred             hccCCccccccccCCCceEEEEEEEEEecc
Confidence            4332                 378999885

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.08  E-value=4.1e-10  Score=75.36  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---CCeeEEEEEEecCchhHHHHHHHHHHHhccCCcc------ccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKN------VIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~g~~~~~~~~  124 (131)
                      .+.|...+.||+|+||.||++..   .+..+|+|.+.........+.+|+.++..++|++      ++++++.+...+..
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~   92 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   92 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence            35677788999999999999986   5788999999865544567888998888887654      89999999999999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        93 ~lv~e~~   99 (339)
T 1z57_A           93 CIVFELL   99 (339)
T ss_dssp             EEEEECC
T ss_pred             EEEEcCC
Confidence            9999985

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.08  E-value=4e-10  Score=76.66  Aligned_cols=77  Identities=9%  Similarity=0.075  Sum_probs=63.1

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEE------E-CCeeEEEEEEecCchhHHHHHHHHHHHhccC---CccccceeeEEEeCC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGF------L-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN---HKNVIRLIGCCLETE  122 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~------~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~g~~~~~~  122 (131)
                      ....|...+.||+|+||.||++.      . .+..+|+|.+....  ...+..|+.++..++   |+|++.+++.+...+
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN--PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC--HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC--hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            34567777889999999999994      2 67889999997654  345677777777776   899999999999999


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..+||+||+
T Consensus       141 ~~~lv~e~~  149 (365)
T 3e7e_A          141 GSVLVGELY  149 (365)
T ss_dssp             CEEEEECCC
T ss_pred             CcEEEEecc
Confidence            999999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.07  E-value=4.9e-10  Score=78.07  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             CcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           58 DRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...+.||+|+||.||.... +|..||+|.+....  ...+.+|+.++..+ +|+||+++++.+......+||+||+
T Consensus        18 ~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~   91 (434)
T 2rio_A           18 VSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF--CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC   91 (434)
T ss_dssp             EEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH--HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence            3457899999999976655 88899999987533  24567899999876 7999999999999889999999985

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.06  E-value=5.4e-10  Score=73.83  Aligned_cols=76  Identities=20%  Similarity=0.347  Sum_probs=60.6

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--C---CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe-CCeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--H---DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE-TENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~---~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~~lv  127 (131)
                      .|...+.||+|+||.||++..  .   ...+++|.+......  ...+.+|+.++..++|+||+++++.+.. ....+++
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  105 (298)
T 3f66_A           26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  105 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEE
Confidence            456678999999999999986  2   235789988754332  3668899999999999999999998654 5578999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       106 ~e~~  109 (298)
T 3f66_A          106 LPYM  109 (298)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9985

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.06  E-value=4e-10  Score=75.00  Aligned_cols=80  Identities=21%  Similarity=0.392  Sum_probs=59.6

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE-C----CeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC-
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL-H----DYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE-  122 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~-~----~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-  122 (131)
                      ...+.|...+.||+|+||.||++.. .    +..+|+|.+......   ...+.+|+.++..++|+||+++++++.... 
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  110 (313)
T 3brb_A           31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS  110 (313)
T ss_dssp             CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred             cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence            3445677788899999999999987 2    247999998754322   356889999999999999999999987644 


Q ss_pred             ----eeEEEEeeC
Q 040342          123 ----NPVLVFEYV  131 (131)
Q Consensus       123 ----~~~lv~E~~  131 (131)
                          ..++|+||+
T Consensus       111 ~~~~~~~~v~e~~  123 (313)
T 3brb_A          111 QGIPKPMVILPFM  123 (313)
T ss_dssp             ----CEEEEEECC
T ss_pred             cCCcccEEEEecc
Confidence                358999985

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.05  E-value=5.9e-10  Score=73.11  Aligned_cols=77  Identities=17%  Similarity=0.313  Sum_probs=62.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-C----CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-H----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++|.....||+|+||.||++.. .    +..+++|.+......  ...+.+|+.++..++|+|++++++++.. +..++
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~   89 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence            45677788999999999999987 2    235899998764322  4668899999999999999999998764 56789


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        90 v~e~~   94 (281)
T 3cc6_A           90 IMELY   94 (281)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99985

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.05  E-value=5e-10  Score=77.10  Aligned_cols=74  Identities=26%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCC------eeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE------NPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------~~~lv  127 (131)
                      ..|...+.||+|+||.||.+.. .+..+|+|.+......   ..+|+.++..++|+||+++++++....      ..++|
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~---~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv  116 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF---KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLV  116 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS---CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch---HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEE
Confidence            4577788999999999999999 6667898887643322   237899999999999999999986533      37899


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus       117 ~e~~  120 (394)
T 4e7w_A          117 LEYV  120 (394)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            9985

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.04  E-value=2.7e-10  Score=77.36  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCch-----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDY-----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETEN  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~-----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~  123 (131)
                      ++|...+.||+|+||.||++..     .+..+|+|.+.....     ....+.+|+.++..+ +|+||+++++++.....
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            5677788999999999999987     467899999864321     134567888999988 69999999999999999


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus       134 ~~lv~e~~  141 (355)
T 1vzo_A          134 LHLILDYI  141 (355)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeecC
Confidence            99999985

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.04  E-value=7e-10  Score=81.02  Aligned_cols=79  Identities=18%  Similarity=0.280  Sum_probs=63.5

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE-C----CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL-H----DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~-~----~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      ...+.|...+.||+|+||.||+|.. .    +..+|+|.+......  ...+.+|+.++..++|+||+++++++. .+..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~  465 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV  465 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence            3345566778899999999999987 2    356899988754322  367899999999999999999999985 4678


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus       466 ~lv~E~~  472 (656)
T 2j0j_A          466 WIIMELC  472 (656)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999985

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.04  E-value=1.4e-10  Score=77.26  Aligned_cols=79  Identities=16%  Similarity=0.209  Sum_probs=66.5

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---HHHHHHHHHHHhccC--CccccceeeEEEeCCeeE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMN--HKNVIRLIGCCLETENPV  125 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~--h~niv~l~g~~~~~~~~~  125 (131)
                      .....|.....||+|+||.||++.. .+..+|+|.+......   ...+.+|+.++..++  |+|++++++++...+..+
T Consensus        25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~  104 (313)
T 3cek_A           25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  104 (313)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred             eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence            3456677888999999999999988 7788999998754322   366889999999997  599999999999999999


Q ss_pred             EEEee
Q 040342          126 LVFEY  130 (131)
Q Consensus       126 lv~E~  130 (131)
                      +++|+
T Consensus       105 lv~e~  109 (313)
T 3cek_A          105 MVMEC  109 (313)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99985

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.04  E-value=1.2e-09  Score=73.35  Aligned_cols=76  Identities=25%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHH--HhccCCccccceeeEEEe-----CCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVF--ASQMNHKNVIRLIGCCLE-----TENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~--l~~l~h~niv~l~g~~~~-----~~~~~l  126 (131)
                      .++|...+.||+|+||.||++...+..+|+|.+......  .+..+..+  +..++|+||+++++.+..     ....++
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~--~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~l   89 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQ--NFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLL   89 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGGHH--HHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred             hHHhheeeecccCCCeEEEEEEECCeEEEEEEeeccchh--hHHHHHHHHHHHhccCcchhhheecccccccCCCceEEE
Confidence            456777889999999999999888899999999754432  33444444  445889999999986543     225689


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        90 v~e~~   94 (336)
T 3g2f_A           90 VMEYY   94 (336)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99985

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.04  E-value=2.5e-10  Score=76.52  Aligned_cols=76  Identities=20%  Similarity=0.344  Sum_probs=59.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCee----EEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYP----VSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~----vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      ++|...+.||+|+||.||++..  .+..    +++|.+......  ...+.+|+.++..++|+||+++++++. ++..++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            4566778999999999999997  4443    788877543322  245778999999999999999999886 466889


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        92 v~e~~   96 (325)
T 3kex_A           92 VTQYL   96 (325)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99985

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.04  E-value=9.5e-10  Score=75.31  Aligned_cols=80  Identities=19%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-Cc-----cccceeeEEEeCCe
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HK-----NVIRLIGCCLETEN  123 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~l~g~~~~~~~  123 (131)
                      ...++|...+.||+|+||.||++..  .+..||+|.+.........+..|+.++..+. |+     +++.+.+.+...+.
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  130 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH  130 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence            3456788889999999999999988  6789999999865544456777888877765 44     48999999999999


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus       131 ~~lv~e~~  138 (382)
T 2vx3_A          131 LCLVFEML  138 (382)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEecC
Confidence            99999985

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.03  E-value=6.2e-10  Score=74.35  Aligned_cols=79  Identities=23%  Similarity=0.282  Sum_probs=61.9

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE---CCeeEEEEEEecCchh---HHHHHHHHHHHhcc---CCccccceeeEEE----
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL---HDYPVSIMKFVNSDYA---AEFCFNNIVFASQM---NHKNVIRLIGCCL----  119 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~---~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l---~h~niv~l~g~~~----  119 (131)
                      ..+.|.....||+|+||.||++..   .+..+|+|.+......   ...+.+|+.++..+   .|+||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            346788889999999999999987   4678999998753322   23566787777665   8999999999986    


Q ss_pred             -eCCeeEEEEeeC
Q 040342          120 -ETENPVLVFEYV  131 (131)
Q Consensus       120 -~~~~~~lv~E~~  131 (131)
                       .....++|+||+
T Consensus        89 ~~~~~~~lv~e~~  101 (326)
T 1blx_A           89 DRETKLTLVFEHV  101 (326)
T ss_dssp             SSEEEEEEEEECC
T ss_pred             CCCceEEEEEecC
Confidence             456788999985

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.03  E-value=2.6e-10  Score=78.05  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=59.1

Q ss_pred             CcCCeeeeCCCeEEEEEEE---CC--eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe-CCeeEEEEe
Q 040342           58 DRQKVITTGLGYELFKGFL---HD--YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE-TENPVLVFE  129 (131)
Q Consensus        58 ~~~~~lg~g~fg~v~~~~~---~~--~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~~lv~E  129 (131)
                      ...+.||+|+||.||++..   .+  ..+|+|.+......  ...+.+|+.++..++|+||+++++++.. .+..++|+|
T Consensus        92 ~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e  171 (373)
T 3c1x_A           92 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  171 (373)
T ss_dssp             EEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEE
T ss_pred             ecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEE
Confidence            3457899999999999987   22  35789988653322  3678999999999999999999998754 457899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       172 ~~  173 (373)
T 3c1x_A          172 YM  173 (373)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.03  E-value=1.5e-09  Score=71.61  Aligned_cols=77  Identities=16%  Similarity=0.064  Sum_probs=65.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .++|...+.||+|+||.||++..  .+..+|+|.+.... ....+.+|+.++..+ +|+|++.+++++......++|+||
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~   87 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   87 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence            45677789999999999999997  78899999986543 234578899999998 699999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        88 ~   88 (298)
T 1csn_A           88 L   88 (298)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.03  E-value=3.5e-10  Score=78.85  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...|...+.||+|+||.|+.... ++..||+|.+.....  ..+.+|+.++..+ +|+||+++++.+......+||+||+
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~--~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~  100 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF--SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC  100 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE--EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH--HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence            34577788999999999654444 888999999875332  2356899999988 7999999999999999999999985

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.02  E-value=7e-10  Score=75.37  Aligned_cols=78  Identities=14%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-----------CccccceeeEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-----------HKNVIRLIGCCLE  120 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~g~~~~  120 (131)
                      .+.|...+.||+|+||.||.+..  .+..+|+|.+.........+.+|+.++..+.           |+||+++++.+..
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            35677789999999999999998  7889999999865544566888988888776           7899999999875


Q ss_pred             CC----eeEEEEeeC
Q 040342          121 TE----NPVLVFEYV  131 (131)
Q Consensus       121 ~~----~~~lv~E~~  131 (131)
                      .+    ..++++||+
T Consensus        98 ~~~~~~~~~lv~e~~  112 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVL  112 (373)
T ss_dssp             EETTEEEEEEEECCC
T ss_pred             cCCCCceEEEEEecC
Confidence            43    788999874

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.01  E-value=1.1e-09  Score=73.61  Aligned_cols=76  Identities=21%  Similarity=0.413  Sum_probs=60.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCch--hHHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDY--AAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~--~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .+|...+.||+|+||.||++..  .+.    .+++|.+.....  ....+.+|+.++..++|+||+++++++..+. .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence            5677788999999999999997  444    357777754332  2467899999999999999999999997654 677


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ++||+
T Consensus        94 v~~~~   98 (327)
T 3lzb_A           94 ITQLM   98 (327)
T ss_dssp             EECCC
T ss_pred             EEEec
Confidence            88764

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.00  E-value=1.4e-09  Score=73.23  Aligned_cols=78  Identities=12%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CC-eeEEEEEEecCchhHHHHHHHHHHHhccCCcc------ccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HD-YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKN------VIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~-~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~g~~~~~~~~  124 (131)
                      .+.|.....||+|+||.||.+..  .+ ..+|+|.+.........+..|+.++..+.|++      ++.+.+.+......
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM   97 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence            45778889999999999999988  44 68999999865544567888999999887766      88888989888999


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        98 ~lv~e~~  104 (355)
T 2eu9_A           98 CIAFELL  104 (355)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9999985

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.98  E-value=9.5e-10  Score=80.53  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=65.1

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++|.....||+|+||.||.+..  .+..+|+|.+.....    ....+..|..++..+ +|++|+.+++++...+..+|
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l  419 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF  419 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence            45677788999999999999998  677899999975321    124577888888887 69999999999988899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      ||||+
T Consensus       420 V~E~~  424 (674)
T 3pfq_A          420 VMEYV  424 (674)
T ss_dssp             EEECC
T ss_pred             EEeCc
Confidence            99996

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.98  E-value=2e-09  Score=74.31  Aligned_cols=67  Identities=9%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHh-ccCCccccceeeEEEe----CCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFAS-QMNHKNVIRLIGCCLE----TENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~-~l~h~niv~l~g~~~~----~~~~~lv~E~~  131 (131)
                      +.||+|+||.||.+..  ++..+|+|.+...    ..+.+|+.++. ..+|+||+++++++..    ....+||+||+
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~  141 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL  141 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCcc----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeC
Confidence            5799999999999998  6788999998743    24567777764 4579999999998865    55789999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.97  E-value=4.2e-10  Score=74.85  Aligned_cols=81  Identities=20%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-------HHHHHHHHHHHhcc----CCccccceee
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-------AEFCFNNIVFASQM----NHKNVIRLIG  116 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-------~~~~~~e~~~l~~l----~h~niv~l~g  116 (131)
                      .+...++|...+.||+|+||.||++..  ++..+|+|.+......       ...+..|+.++..+    +|+||+++++
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~  105 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD  105 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence            344567788899999999999999988  6788999998754321       13356788888887    8999999999


Q ss_pred             EEEeCCeeEEEEee
Q 040342          117 CCLETENPVLVFEY  130 (131)
Q Consensus       117 ~~~~~~~~~lv~E~  130 (131)
                      ++...+..++++||
T Consensus       106 ~~~~~~~~~~v~e~  119 (312)
T 2iwi_A          106 WFETQEGFMLVLER  119 (312)
T ss_dssp             EC-----CEEEEEC
T ss_pred             EEecCCeEEEEEEe
Confidence            99888889999997

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.97  E-value=2.8e-09  Score=70.61  Aligned_cols=73  Identities=10%  Similarity=0.224  Sum_probs=58.5

Q ss_pred             cCCCcC-CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHH-hccCCccccceeeEEEe----CCeeEE
Q 040342           55 KNYDRQ-KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFA-SQMNHKNVIRLIGCCLE----TENPVL  126 (131)
Q Consensus        55 ~~~~~~-~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~g~~~~----~~~~~l  126 (131)
                      ++|... +.||+|+||.||.+..  .+..+|+|.+...    ..+.+|+.++ ...+|+||+++++.+..    ....++
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l   92 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI   92 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEE
Confidence            344444 6799999999999998  7789999998753    2456777777 55689999999999876    667899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        93 v~e~~   97 (299)
T 3m2w_A           93 VMECL   97 (299)
T ss_dssp             EECCC
T ss_pred             EEeec
Confidence            99985

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.96  E-value=5e-10  Score=74.99  Aligned_cols=83  Identities=18%  Similarity=0.258  Sum_probs=66.6

Q ss_pred             HHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-------HHHHHHHHHHHhccC--CccccceeeE
Q 040342           49 ELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-------AEFCFNNIVFASQMN--HKNVIRLIGC  117 (131)
Q Consensus        49 ~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-------~~~~~~e~~~l~~l~--h~niv~l~g~  117 (131)
                      +.....+.|.....||+|+||.||.+..  ++..+|+|.+......       ...+..|+.++..+.  |+|++++++.
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~  116 (320)
T 3a99_A           37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW  116 (320)
T ss_dssp             ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred             ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence            3344566788899999999999999988  7889999998754321       134668899999886  5999999999


Q ss_pred             EEeCCeeEEEEeeC
Q 040342          118 CLETENPVLVFEYV  131 (131)
Q Consensus       118 ~~~~~~~~lv~E~~  131 (131)
                      +..++..++++|++
T Consensus       117 ~~~~~~~~lv~e~~  130 (320)
T 3a99_A          117 FERPDSFVLILERP  130 (320)
T ss_dssp             EECSSEEEEEEECC
T ss_pred             EecCCcEEEEEEcC
Confidence            99989999999974

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.96  E-value=7.9e-11  Score=78.51  Aligned_cols=83  Identities=17%  Similarity=0.259  Sum_probs=67.6

Q ss_pred             HHHHHhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           48 NELKIATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        48 ~~~~~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .++....++|...+.||+|+||.||++...+ .+++|.+......   ...+.+|+.++..++|+||+++++++...+..
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  104 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHL  104 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS-SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCE
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC-eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCce
Confidence            4444556778889999999999999998843 4899988654322   24577899999999999999999999988899


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++++||+
T Consensus       105 ~iv~e~~  111 (319)
T 2y4i_B          105 AIITSLC  111 (319)
T ss_dssp             EEECBCC
T ss_pred             EEEeecc
Confidence            9999985

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=73.95  Aligned_cols=73  Identities=12%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-C---------CeeEEEEEEecCchhHHHHHHHHHHHhccCCccccc-----------
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-H---------DYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIR-----------  113 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~---------~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~-----------  113 (131)
                      ++|...+.||+|+||.||++.. .         +..+|+|.+...    ..+.+|+.++..++|+|+++           
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  117 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLL  117 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTC
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHhcccchhhhhhhhccCCcc
Confidence            5677789999999999999988 3         578999998754    35788999999999999987           


Q ss_pred             ----eeeEEEe-CCeeEEEEeeC
Q 040342          114 ----LIGCCLE-TENPVLVFEYV  131 (131)
Q Consensus       114 ----l~g~~~~-~~~~~lv~E~~  131 (131)
                          +++++.. +...++|+||+
T Consensus       118 ~i~~~~~~~~~~~~~~~lv~e~~  140 (352)
T 2jii_A          118 AIPTCMGFGVHQDKYRFLVLPSL  140 (352)
T ss_dssp             SCCCCCEEEEETTTEEEEEEECC
T ss_pred             CccchhhccccCCcEEEEEecCC
Confidence                5666665 67889999985

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.94  E-value=1.8e-10  Score=84.07  Aligned_cols=77  Identities=18%  Similarity=0.152  Sum_probs=62.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe------CCee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE------TENP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~------~~~~  124 (131)
                      +.|.....||+|+||.||.+..  ++..+|+|.+......  ...+.+|+.++..++|+||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6788899999999999999988  6889999988754222  3668899999999999999999988654      5678


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        94 ~LVmEy~  100 (676)
T 3qa8_A           94 LLAMEYC  100 (676)
T ss_dssp             CCEEECC
T ss_pred             EEEEEeC
Confidence            9999985

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.92  E-value=1.3e-09  Score=71.58  Aligned_cols=77  Identities=18%  Similarity=0.181  Sum_probs=54.6

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---CCe--eEEEEEEecCch----hHHHHHHHHHHHhccCCccccceeeEEEeCCee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---HDY--PVSIMKFVNSDY----AAEFCFNNIVFASQMNHKNVIRLIGCCLETENP  124 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---~~~--~vavk~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~  124 (131)
                      .++|...+.||+|+||.||++.+   .+.  .+++|.+.....    ....+.+|+.++..++|+|++++++++..+ ..
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~   95 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-PM   95 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SC
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC-Cc
Confidence            34677788999999999999986   222  589998875421    236688999999999999999999998765 48


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      ++|+||+
T Consensus        96 ~~v~e~~  102 (291)
T 1u46_A           96 KMVTELA  102 (291)
T ss_dssp             EEEEECC
T ss_pred             eeeEecc
Confidence            8999984

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.90  E-value=2.3e-09  Score=72.95  Aligned_cols=78  Identities=9%  Similarity=0.044  Sum_probs=58.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchhH------------HHHHHHHHHHhccCCccccce
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYAA------------EFCFNNIVFASQMNHKNVIRL  114 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~~------------~~~~~e~~~l~~l~h~niv~l  114 (131)
                      .++|.....||+|+||.||++.. .      +..+|+|.+.......            .....++..+..++|+||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            45778889999999999999988 3      3679999987654210            124455666778899999999


Q ss_pred             eeEEEeC----CeeEEEEeeC
Q 040342          115 IGCCLET----ENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~----~~~~lv~E~~  131 (131)
                      ++++...    ...+||+||+
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~  134 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF  134 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE
T ss_pred             EeeeeeccCCcceEEEEEeCC
Confidence            9998764    4589999985

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.89  E-value=8e-09  Score=70.42  Aligned_cols=76  Identities=9%  Similarity=-0.068  Sum_probs=48.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHH---HHhccCCcccccee-------eEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIV---FASQMNHKNVIRLI-------GCC  118 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~---~l~~l~h~niv~l~-------g~~  118 (131)
                      ..|...+.||+|+||.||++..  ++..+|+|.+......    ...+..|+.   .+.. +|+|+++++       +.+
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence            3467788999999999999998  7889999999875431    345677754   4555 699977754       444


Q ss_pred             EeC-----------------CeeEEEEeeC
Q 040342          119 LET-----------------ENPVLVFEYV  131 (131)
Q Consensus       119 ~~~-----------------~~~~lv~E~~  131 (131)
                      ...                 ...+||+||+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~  170 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAA  170 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCC
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCC
Confidence            322                 3379999986

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.89  E-value=9.7e-09  Score=67.62  Aligned_cols=77  Identities=18%  Similarity=0.108  Sum_probs=62.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEE-EeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCC-LETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~-~~~~~~~lv~E~  130 (131)
                      .++|...+.||+|+||.||.+..  ++..+|+|.+..... ...+.+|+.++..++|++++..+..+ ......++|+||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEe
Confidence            45677889999999999999997  788999999875432 24588999999999988876666555 567788999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        87 ~   87 (296)
T 3uzp_A           87 L   87 (296)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.88  E-value=2.4e-09  Score=72.33  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCchh------------HHHHHHHHHHHhccCCccccceeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDYA------------AEFCFNNIVFASQMNHKNVIRLIGC  117 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~~------------~~~~~~e~~~l~~l~h~niv~l~g~  117 (131)
                      ++|...+.||+|+||.||++..     .+..+++|........            ...+.+|+..+..++|+||+++++.
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            4677788999999999999998     2457899988754321            1236678888899999999999999


Q ss_pred             EEe----CCeeEEEEeeC
Q 040342          118 CLE----TENPVLVFEYV  131 (131)
Q Consensus       118 ~~~----~~~~~lv~E~~  131 (131)
                      +..    ....++|+||+
T Consensus       117 ~~~~~~~~~~~~lv~e~~  134 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL  134 (345)
T ss_dssp             EEEESSSCEEEEEEEECE
T ss_pred             cccccCCCcEEEEEEecc
Confidence            987    67899999984

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.87  E-value=1.1e-08  Score=67.28  Aligned_cols=77  Identities=18%  Similarity=0.108  Sum_probs=59.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEE-EeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCC-LETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~-~~~~~~~lv~E~  130 (131)
                      .+.|...+.||+|+||.||.+..  .+..+|+|.+..... ...+..|+.++..++|++++..+..+ ..++..++++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEc
Confidence            46788899999999999999997  788999998664332 24578899999999988877666655 567788999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        87 ~   87 (296)
T 4hgt_A           87 L   87 (296)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.84  E-value=1.6e-08  Score=68.08  Aligned_cols=75  Identities=11%  Similarity=0.187  Sum_probs=55.9

Q ss_pred             hcCCCc-CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe----CCeeEE
Q 040342           54 TKNYDR-QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE----TENPVL  126 (131)
Q Consensus        54 ~~~~~~-~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~----~~~~~l  126 (131)
                      .++|.. .+.||+|+||.||.+..  ++..+|+|.+........   .....+..+.|+|++++++++..    ....++
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l  103 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQ---EVDHHWQASGGPHIVCILDVYENMHHGKRCLLI  103 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHH---HHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHH---HHHHHHHhcCCCChHHHHHHHhhccCCCceEEE
Confidence            456666 34699999999999998  688999999976432222   22233556789999999999865    445899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       104 v~e~~  108 (336)
T 3fhr_A          104 IMECM  108 (336)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99985

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.78  E-value=3.2e-08  Score=70.00  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=61.3

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCC-ccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH-KNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .+.|...+.||+|+||.||++..  .+..||+|.+..... ...+..|+.++..+.| +++..+..++...+..+||+||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~   84 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL   84 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence            35678889999999999999998  688999998775432 2357889999999987 4555556666778889999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        85 ~   85 (483)
T 3sv0_A           85 L   85 (483)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.78  E-value=1.8e-08  Score=72.18  Aligned_cols=73  Identities=12%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             cCCeeeeCCCeEEEEEEECCeeEEEEEEecCch---h------HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           59 RQKVITTGLGYELFKGFLHDYPVSIMKFVNSDY---A------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~---~------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ..+.||+|+||.||++...+..+++|.......   .      ...+.+|+.++..++|+||+.+..++...+..+||+|
T Consensus       340 ~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE  419 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMS  419 (540)
T ss_dssp             --------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEE
T ss_pred             CCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEE
Confidence            356899999999999976777888887654221   1      1347899999999999999977666667788899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       420 ~~  421 (540)
T 3en9_A          420 YI  421 (540)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.75  E-value=5.9e-08  Score=64.10  Aligned_cols=73  Identities=11%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCch-------------------hHHHHHHHHHHHhccCCccccce
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDY-------------------AAEFCFNNIVFASQMNHKNVIRL  114 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~-------------------~~~~~~~e~~~l~~l~h~niv~l  114 (131)
                      ..|.....||+|+||.||.+.. ++..+|+|.+.....                   ....+.+|+.++..++  | +++
T Consensus        90 ~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v  166 (282)
T 1zar_A           90 KVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAV  166 (282)
T ss_dssp             SCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSS
T ss_pred             eEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCc
Confidence            3444568999999999999999 789999999864321                   1245789999999998  5 666


Q ss_pred             eeEEEeCCeeEEEEeeC
Q 040342          115 IGCCLETENPVLVFEYV  131 (131)
Q Consensus       115 ~g~~~~~~~~~lv~E~~  131 (131)
                      .+.+.. +..++|+||+
T Consensus       167 ~~~~~~-~~~~lvmE~~  182 (282)
T 1zar_A          167 PKVYAW-EGNAVLMELI  182 (282)
T ss_dssp             CCEEEE-ETTEEEEECC
T ss_pred             CeEEec-cceEEEEEec
Confidence            665543 5679999986

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.46  E-value=3.7e-07  Score=59.42  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=51.2

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCee--EEEEEEecCchh-------------------------HHHHHHHHHHHhccC
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYP--VSIMKFVNSDYA-------------------------AEFCFNNIVFASQMN  107 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~--vavk~~~~~~~~-------------------------~~~~~~e~~~l~~l~  107 (131)
                      +.....||+|+||.||.+..  +|..  +|+|.+......                         ...+.+|+.++..+.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999988  7888  999987543211                         125788999999998


Q ss_pred             CccccceeeEEEeCCeeEEEEeeC
Q 040342          108 HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus       108 h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      |+++........  ...+|||||+
T Consensus       129 ~~~i~~p~~~~~--~~~~lVmE~~  150 (258)
T 1zth_A          129 EAGVSVPQPYTY--MKNVLLMEFI  150 (258)
T ss_dssp             HTTCCCCCEEEE--ETTEEEEECC
T ss_pred             hCCCCCCeEEEc--CCCEEEEEec
Confidence            876422211111  3568999985

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.18  E-value=4.2e-06  Score=60.34  Aligned_cols=55  Identities=15%  Similarity=-0.001  Sum_probs=45.6

Q ss_pred             CCeeEEEEEEecCc------h-----hHHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEEEeeC
Q 040342           77 HDYPVSIMKFVNSD------Y-----AAEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        77 ~~~~vavk~~~~~~------~-----~~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .|..+++|.+....      .     ...+|.+|+.+|.++ .|+||+++++++.++...||||||+
T Consensus       258 fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv  324 (569)
T 4azs_A          258 FGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKL  324 (569)
T ss_dssp             ECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECC
T ss_pred             ccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecC
Confidence            56678999986431      0     125699999999999 5999999999999999999999996

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.95  E-value=8.9e-06  Score=56.31  Aligned_cols=53  Identities=6%  Similarity=-0.036  Sum_probs=42.1

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCC
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNH  108 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h  108 (131)
                      +|...+.||+|+||.||++..  ++..||+|.+......    ...+.+|+.++..+.|
T Consensus        79 ~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           79 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred             eEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence            355567899999999999998  6889999998743222    2568899999998876

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=97.93  E-value=7.7e-06  Score=56.47  Aligned_cols=33  Identities=9%  Similarity=-0.086  Sum_probs=28.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEec
Q 040342           56 NYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVN   88 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~   88 (131)
                      -|.....||+|++|.||.+.. .|..+|+|.++.
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~  129 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRL  129 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence            367788999999999999998 888999998764

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.38  E-value=0.0013  Score=42.41  Aligned_cols=78  Identities=6%  Similarity=-0.133  Sum_probs=58.4

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCc-hhHHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSD-YAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~-~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..+|.....++.++.+.||.....+..+++|...... .....+.+|+.++..+. +..+.++++.....+..++||||+
T Consensus        13 l~~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i   92 (263)
T 3tm0_A           13 IEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA   92 (263)
T ss_dssp             HTTSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             hccceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEec
Confidence            3456555667778888899887666789999887532 11245788999888875 667778888888888899999985

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.54  E-value=0.0065  Score=38.76  Aligned_cols=66  Identities=9%  Similarity=-0.036  Sum_probs=47.3

Q ss_pred             eeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCcc--ccceeeEEEeCCeeEEEEeeC
Q 040342           64 TTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKN--VIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        64 g~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|..+.||.... +|..+++|.....  ....+..|+.++..+.+.+  +.++++....++..++|+||+
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i   97 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSG--ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV   97 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence            3556689999876 5677999987654  2234678888888776444  445777777667789999985

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=95.19  E-value=0.042  Score=37.03  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=48.2

Q ss_pred             CCeeeeCCCeEEEEEEECCeeEEEEEEe--cCch--hHHHHHHHHHHHhccC--CccccceeeEEEeC---CeeEEEEee
Q 040342           60 QKVITTGLGYELFKGFLHDYPVSIMKFV--NSDY--AAEFCFNNIVFASQMN--HKNVIRLIGCCLET---ENPVLVFEY  130 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~~~~~vavk~~~--~~~~--~~~~~~~e~~~l~~l~--h~niv~l~g~~~~~---~~~~lv~E~  130 (131)
                      ...++.|.++.+|.....+..+++|...  ....  ....+.+|..++..+.  +..+.++++.+...   +..++||||
T Consensus        43 ~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~  122 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEF  122 (359)
T ss_dssp             EEECCC-CCSCEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEEC
T ss_pred             EEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEe
Confidence            4568899999999887755567777665  3221  1345778999988887  44577788877654   347899998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       123 v  123 (359)
T 3dxp_A          123 V  123 (359)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=95.00  E-value=0.098  Score=34.14  Aligned_cols=71  Identities=13%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             CCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCc-c--ccceeeEEEeCCeeEEEEeeC
Q 040342           57 YDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHK-N--VIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~-n--iv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.....+|.|..+.||+... +|..+.+|........ ...+..|...|..+... .  +..+++.  .  ..++++||+
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~e~l   92 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAMEWV   92 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEEECC
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEEEee
Confidence            34456789999999999998 8888999976544322 34578898888877532 2  2333332  2  246788864

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=94.12  E-value=0.41  Score=31.94  Aligned_cols=70  Identities=13%  Similarity=-0.019  Sum_probs=51.1

Q ss_pred             CCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccC---CccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMN---HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...++.|....+|.....+..+.+|......  ...+..|...|..+.   ...+.++++.+...+..++|+||+
T Consensus        41 ~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~~--~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLINDEVQTVFVKINERSY--RSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             EEEECCSSSSEEEEEESSSCEEEEEEEEGGG--HHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred             eEEeCCccceeeeEEEECCCeEEEEeCCccc--HHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence            4568899999999877655678888765432  345778888887764   245667777776667889999985

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=92.02  E-value=0.016  Score=40.91  Aligned_cols=57  Identities=5%  Similarity=-0.094  Sum_probs=16.2

Q ss_pred             CCeeeeCCCeEEEEEEE-C-CeeEEE------EEEecCchh---HHHHHHHHHHHhccCCccccceeeEEE
Q 040342           60 QKVITTGLGYELFKGFL-H-DYPVSI------MKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCL  119 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~-~~~vav------k~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~  119 (131)
                      .+.+|   ||.||+|.+ . ..+||+      |........   ...+.++..++..++|+|+++.++...
T Consensus       147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            45565   999999998 3 356777      665543322   245788888888899999999887664

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=91.37  E-value=0.74  Score=31.38  Aligned_cols=70  Identities=20%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCch--------hHHHHHHHHHHHhccCC--cc-ccceeeEEEeCCeeEE
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDY--------AAEFCFNNIVFASQMNH--KN-VIRLIGCCLETENPVL  126 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~--------~~~~~~~e~~~l~~l~h--~n-iv~l~g~~~~~~~~~l  126 (131)
                      ...+|.|..+.||++..  .+..+++|...+...        ....+..|..++..+..  +. +..++..  ..+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            35689999999999965  456788987653211        12345678888776642  33 3344433  3455689


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus       113 vmE~l  117 (397)
T 2olc_A          113 VMEDL  117 (397)
T ss_dssp             EECCC
T ss_pred             EEEeC
Confidence            99974

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=90.57  E-value=2.2  Score=27.14  Aligned_cols=68  Identities=7%  Similarity=-0.020  Sum_probs=46.0

Q ss_pred             eeeeCCCe-EEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           62 VITTGLGY-ELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        62 ~lg~g~fg-~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+..|.-+ .||.-..  .+..+.+|.-....  ...+..|...|..+. +-.+.++++.+..++..++|||++
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~--~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l  102 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGSV--ANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAI  102 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETHH--HHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCCC--HhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEee
Confidence            34445444 5787655  44567888755332  345778888887765 444667788888888899999975

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.41  E-value=0.033  Score=39.35  Aligned_cols=28  Identities=11%  Similarity=-0.122  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhccCCccccceeeEEEeC
Q 040342           94 EFCFNNIVFASQMNHKNVIRLIGCCLET  121 (131)
Q Consensus        94 ~~~~~e~~~l~~l~h~niv~l~g~~~~~  121 (131)
                      .+|..|+..+.+++|+|+|++.|+|...
T Consensus       324 ~eF~~Eve~L~~i~HrNLV~L~gyC~s~  351 (487)
T 3oja_A          324 ETERLECERENQARQREIDALKEQYRTV  351 (487)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhcccccchhhHHHHhcCh
Confidence            5699999999999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-07
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-06
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-05
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-05
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-05
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-05
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-05
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	8e-05
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-04
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-04
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-04
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-04
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-04
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	6e-04
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	6e-04
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	7e-04
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-04
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	8e-04
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	0.001
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	0.001
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	0.001
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	0.001
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	0.002
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	0.002
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	0.002
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	0.003
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	0.004

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 7e-07
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 55  KNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRL 114
           K     + I  G   ++  G      V++ K + +D  A+         +Q+ H N+++L
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDYRGNKVAV-KCIKNDATAQAFLAEASVMTQLRHSNLVQL 65

Query: 115 IGCCLETENPV-LVFEYV 131
           +G  +E +  + +V EY+
Sbjct: 66  LGVIVEEKGGLYIVTEYM 83

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 7/86 (8%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 50  LKIATKNYDRQKVITTGLGYELFKGFLHD----YPVSIMKFVNSDYAAEFCFNNIVFASQ 105
           +++   ++++   +  G G  +FK             ++               +    +
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 106 MNHKNVIRLIGCCLETENPVLVFEYV 131
            N   ++   G         +  E++
Sbjct: 61  CNSPYIVGFYGAFYSDGEISICMEHM 86

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 51  KIATKNYDRQKVITTG------LGYELFKGFLHDYPVSIMK--FVNSDYAAEFCFNNIVF 102
           K   +++   K++  G      L  EL      +Y + I++   +  +    +       
Sbjct: 4   KKRPEDFKFGKILGEGSFSTVVLARELATS--REYAIKILEKRHIIKENKVPYVTRERDV 61

Query: 103 ASQMNHKNVIRLIGCCLETENPVLVFEYV 131
            S+++H   ++L     + E       Y 
Sbjct: 62  MSRLDHPFFVKLYFTFQDDEKLYFGLSYA 90

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 55  KNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNN-IVFASQMNHKNVIR 113
           K+    K + TG    +  G         +K +     +E  F         ++H+ +++
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQ 63

Query: 114 LIGCCLETENPVLVFEYV 131
           L G C +     ++ EY+
Sbjct: 64  LYGVCTKQRPIFIITEYM 81

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 55  KNYDRQKVITTGLGY-ELFKGFLHDYPVSIMKFVNSDYAAEFCFNN-IVFASQMNHKNVI 112
                 + I +G  +  +  G+  +     +K +     +E  F        +++H  ++
Sbjct: 5   SELTFVQEIGSG-QFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLV 63

Query: 113 RLIGCCLETENPVLVFEYV 131
           +L G CLE     LVFE++
Sbjct: 64  QLYGVCLEQAPICLVFEFM 82

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 54  TKNYDRQKVITTGLGYELFKGFLHD----YPVSIMKFVNSDYAAEFCFNNIVFASQMNHK 109
            K Y R + I  G    ++            +  M             N I+   +  + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELI-INEILVMRENKNP 77

Query: 110 NVIRLIGCCLETENPVLVFEYV 131
           N++  +   L  +   +V EY+
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYL 99

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.8 bits (90), Expect = 7e-05
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 84  MKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
                S+   +     + F  ++ H N I+  GC L      LV EY 
Sbjct: 50  YSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC 97

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 8e-05
 Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 52  IATKNYDRQKVITTGLGY-ELFKGFLHDYPVSIMKFVNSDYAAEFCFNN-IVFASQMNHK 109
           +  +     + +  G  + E++ G+ + +    +K +     +   F        Q+ H+
Sbjct: 10  VPRETLKLVERLGAG-QFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQ 68

Query: 110 NVIRLIGCCLETENPVLVFEYV 131
            ++RL     + E   ++ EY+
Sbjct: 69  RLVRLYAVVTQ-EPIYIITEYM 89

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 55  KNYDRQKVITTGLGYELFKGFLHD----YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKN 110
           +++D  + +  G   E+             V I+    +    E     I     +NH+N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 111 VIRLIGCCLETENPVLVFEYV 131
           V++  G   E     L  EY 
Sbjct: 65  VVKFYGHRREGNIQYLFLEYC 85

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  MKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
            KF+N+ Y        N I   +Q++H  +I L     +    VL+ E++
Sbjct: 59  AKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 108

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 84  MKFVNSDYAA--EFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
            KFV + + +  E     I   S + H  ++ L     +    V+++E++
Sbjct: 56  AKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 105

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 84  MKFVNSDYAAEFCFNN-IVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
            KFV      +      I   +   H+N++ L       E  V++FE++
Sbjct: 35  AKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI 83

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 54  TKNYDRQKVITTGLGYELFKGFLHD----YPVSIMKFVNSDYAAEFCFNNIVFASQMNHK 109
              YD + V+ TG   E+             +  +     +       N I    ++ H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 110 NVIRLIGCCLETENPVLVFEYV 131
           N++ L        +  L+ + V
Sbjct: 68  NIVALDDIYESGGHLYLIMQLV 89

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 49  ELKIATKNYDRQKVITTGLGY-ELFKGFLHDYPVSI-MKFVNSDYAAEFCFNN-IVFASQ 105
           + ++   +   +  +  G  Y E+++G    Y +++ +K +  D      F        +
Sbjct: 11  KWEMERTDITMKHKLGGG-QYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKE 69

Query: 106 MNHKNVIRLIGCCLETENPVLVFEYV 131
           + H N+++L+G C       ++ E++
Sbjct: 70  IKHPNLVQLLGVCTREPPFYIITEFM 95

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 10/48 (20%), Positives = 17/48 (35%)

Query: 84  MKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
            K      + E     +    ++ H NVI L        + +L+ E V
Sbjct: 48  TKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELV 95

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 7e-04
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 83  IMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
           + +  +S           +     +H+N++ L+G C  +    L+FEY 
Sbjct: 75  LKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYC 123

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 8/80 (10%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 56  NYDRQKVITTGLGYELFKGFLHD----YPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNV 111
            ++    +  G   +++K    +        ++   + +   ++    I   +  +H N+
Sbjct: 13  FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDY-MVEIDILASCDHPNI 71

Query: 112 IRLIGCCLETENPVLVFEYV 131
           ++L+       N  ++ E+ 
Sbjct: 72  VKLLDAFYYENNLWILIEFC 91

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 55  KNYDRQKVITTGLGY-ELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIR 113
           +    Q+ I  G  + E+++G      V++  F + +  + F    I     + H+N++ 
Sbjct: 3   RTIVLQESIGKG-RFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILG 61

Query: 114 LIGCCLETENPVLVFEYV 131
            I    +          V
Sbjct: 62  FIAADNKDNGTWTQLWLV 79

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 67  LGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL 126
            G    +    D  + ++K        E          Q+++  ++RLIG C + E  +L
Sbjct: 27  QGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 85

Query: 127 VFEYV 131
           V E  
Sbjct: 86  VMEMA 90

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 107 NHKNVIRLIGCCLETENPVLVFEYV 131
           NH N++ L+G C      +++ EY 
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYC 109

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 52  IATKNYDRQKVITTGLGY-ELFKGFLHD-YPVSIMKFVNSDYAAEFCFNN-IVFASQMNH 108
           I        + I +G  +  ++KG  H    V ++            F N +    +  H
Sbjct: 5   IPDGQITVGQRIGSG-SFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRH 63

Query: 109 KNVIRLIGCCLETENPVLVFEYV 131
            N++  +G         +V ++ 
Sbjct: 64  VNILLFMGYS-TAPQLAIVTQWC 85

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.001
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 51  KIATKNYDRQKVITTGLGY-ELFKGFLHD--------YPVSIMKFVNSDYAAEFCFNNIV 101
           +I      RQKVI  G  + E++KG L            +  +K   ++           
Sbjct: 3   EIHPSCVTRQKVIGAG-EFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAG 61

Query: 102 FASQMNHKNVIRLIGCCLETENPVLVFEY 130
              Q +H N+IRL G   + +  +++ EY
Sbjct: 62  IMGQFSHHNIIRLEGVISKYKPMMIITEY 90

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 18/107 (16%)

Query: 42  IRCFHENELKIATKNYDR---------QKVITTGLGY-ELFKGFLHD-------YPVSIM 84
           I  F   +   A + + +         ++VI  G  + E+  G L           +  +
Sbjct: 4   IDPFTFEDPNEAVREFAKEIDISCVKIEQVIGAG-EFGEVCSGHLKLPGKREIFVAIKTL 62

Query: 85  KFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
           K   ++       +      Q +H NVI L G   ++   +++ E++
Sbjct: 63  KSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFM 109

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 88  NSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV 131
             D         I    +++H N+I L+       N  LVF+++
Sbjct: 39  AKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM 82

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 81  VSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETEN-PVLVFEYV 131
           V  +  +             +     +H NV+ L+G CL +E  P++V  Y+
Sbjct: 60  VKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM 111

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 67  LGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNN-IVFASQMNHKNVIRLIGCCLETENPV 125
            GY   K  +    V I+K   +D A +           Q+++  ++R+IG C E E+ +
Sbjct: 25  KGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 83

Query: 126 LVFEYV 131
           LV E  
Sbjct: 84  LVMEMA 89

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 52  IATKNYDRQKVITTGLGY-ELFKGFLHD-------YPVSIMKFVNSDYAAEFCFNNIVFA 103
           I  +  +  + I  G  + ++ +G             +   K   SD   E      +  
Sbjct: 4   IQRERIELGRCIGEG-QFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTM 62

Query: 104 SQMNHKNVIRLIGCCLETENPVLVFEYV 131
            Q +H ++++LIG   E     ++ E  
Sbjct: 63  RQFDHPHIVKLIGVITE-NPVWIIMELC 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.72
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.72
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.69
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.68
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.65
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.64
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.64
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.64
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.63
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.63
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.63
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.62
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.62
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.61
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.6
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.6
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.6
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.59
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.59
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.57
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.57
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.57
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.56
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.56
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.56
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.54
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.53
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.53
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.53
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.53
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.52
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.52
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.52
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.52
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.5
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.5
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.5
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.49
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.47
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.46
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.44
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.43
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.43
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.43
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.42
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.42
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.4
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.39
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.38
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.35
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.31
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.29
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.28
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.27
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.26
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.24
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.22
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.17
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.88
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.69
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	94.2
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	84.05

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-17  Score=106.69  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=70.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||+|.+ ++..||+|.++........+.+|+.++..++|+||++++|++..++..++|+||+
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEcc
Confidence            5778889999999999999999 7889999999876666678999999999999999999999999889999999986

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.1e-18  Score=114.29  Aligned_cols=84  Identities=13%  Similarity=0.326  Sum_probs=73.3

Q ss_pred             HHHHHhhcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           48 NELKIATKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        48 ~~~~~~~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      ++++...++|...+.||+|+||.||+|.+  .+..||+|.+.........+.+|+.+|..++||||++++|++..++..+
T Consensus        10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (287)
T d1opja_          10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY   89 (287)
T ss_dssp             CTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             cccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeE
Confidence            34445566788888999999999999998  6889999999866555677999999999999999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      ||+||+
T Consensus        90 iv~E~~   95 (287)
T d1opja_          90 IITEFM   95 (287)
T ss_dssp             EEEECC
T ss_pred             EEeecc
Confidence            999986

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-17  Score=106.37  Aligned_cols=77  Identities=21%  Similarity=0.325  Sum_probs=69.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||+|.+ ++..||+|.+.........+.+|+.++..++|+||++++|++..++..++|+||+
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEec
Confidence            3566678899999999999999 7888999999876555678999999999999999999999999889999999996

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-17  Score=107.43  Aligned_cols=81  Identities=14%  Similarity=0.285  Sum_probs=69.1

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      +++..++|...+.||+|+||.||+|.+ ++..||||.+.........+.+|+.++.+++|+||++++|++.. +..+||+
T Consensus         8 wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~   86 (272)
T d1qpca_           8 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIIT   86 (272)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             eecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEE
Confidence            344456777788999999999999999 77889999998765556779999999999999999999998854 5679999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        87 Ey~   89 (272)
T d1qpca_          87 EYM   89 (272)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            986

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.4e-16  Score=102.37  Aligned_cols=77  Identities=12%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|.....||+|+||.||++..  ++..+|+|.+...... ...+.+|+.+|..++||||+++++++..++..+|||||+
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            4567778899999999999998  6788999999765433 467899999999999999999999999999999999996

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.9e-16  Score=102.61  Aligned_cols=77  Identities=13%  Similarity=0.116  Sum_probs=68.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|...+.||+|+||.||+|..  ++..+|+|.+.........+.+|+.+|..++|+||+++++++..++..+|||||+
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~   83 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecC
Confidence            3567788999999999999998  7889999999876555566889999999999999999999999999999999996

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4e-16  Score=101.21  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=65.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      ++|...+.||+|+||.||++..  ++..+|+|.+......  ...+.+|+.++..++||||+++++++..++..+|||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            4577788999999999999998  6889999999764332  35689999999999999999999999999999999998


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        85 ~   85 (271)
T d1nvra_          85 C   85 (271)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=104.15  Aligned_cols=78  Identities=15%  Similarity=0.210  Sum_probs=67.5

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..++|...+.||+|+||.||+|.. ++..||+|.+.........|.+|+.++.+++|+||++++|++. .+..++|+||+
T Consensus        15 ~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~   93 (285)
T d1fmka3          15 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   93 (285)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred             CHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEec
Confidence            345678889999999999999999 7778999999866555577999999999999999999999985 45689999986

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-16  Score=105.62  Aligned_cols=78  Identities=9%  Similarity=0.103  Sum_probs=68.7

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .++|...+.||+|+||.||++..  ++..+|+|.++.....  ...+.+|+.+|..++||||+++++++...+..+||||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            45778889999999999999998  7889999999754322  3668899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        85 y~   86 (322)
T d1s9ja_          85 HM   86 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            96

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.3e-16  Score=100.47  Aligned_cols=77  Identities=19%  Similarity=0.319  Sum_probs=68.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ..|...+.||+|+||.||++..  +|..||+|.+...... ...+.+|+.+++.++||||+++++++..++..+|||||+
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            3577788999999999999997  7889999998754433 466899999999999999999999999999999999996

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.4e-16  Score=102.84  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=63.0

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CC---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HD---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      .|...+.||+|+||.||+|..  ++   ..+|+|.+......  ...|.+|+.+|.+++||||++++|++..++..+||+
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~  106 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIIT  106 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEE
Confidence            445567899999999999987  33   25888988654332  367999999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       107 Ey~  109 (299)
T d1jpaa_         107 EFM  109 (299)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            996

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=9.4e-16  Score=101.13  Aligned_cols=76  Identities=22%  Similarity=0.278  Sum_probs=66.5

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .|...+.||+|+||.||+|..  ++..||+|.+......    ...+.+|+.+|..++||||+++++++..++..+||+|
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            366678899999999999998  7889999999754322    2568899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        96 ~~   97 (309)
T d1u5ra_          96 YC   97 (309)
T ss_dssp             CC
T ss_pred             ec
Confidence            96

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1e-15  Score=100.18  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=67.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-------HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      +.|...+.||+|+||.||++..  +|..+|+|.+......       ...+.+|+.+|..++||||+++++++...+..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            4577789999999999999998  6889999998643221       356899999999999999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      ||+||+
T Consensus        90 iv~E~~   95 (293)
T d1jksa_          90 LILELV   95 (293)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999996

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.62  E-value=1.5e-15  Score=101.76  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .++|...+.||+|+||.||++..  +|..+|+|.+...... ...+.+|+.+|..++|+||+++++++...+..+|||||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35788889999999999999998  7889999999765544 46688999999999999999999999999999999999


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus       105 ~  105 (350)
T d1koaa2         105 M  105 (350)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=98.01  Aligned_cols=77  Identities=13%  Similarity=0.291  Sum_probs=67.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  ++..+|+|.+......    ...+.+|+.++..++||||+++++++..++..+|||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            4577788999999999999998  6789999998754322    356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        86 Ey~   88 (263)
T d2j4za1          86 EYA   88 (263)
T ss_dssp             ECC
T ss_pred             eec
Confidence            996

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.60  E-value=2.1e-15  Score=101.08  Aligned_cols=77  Identities=16%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.|...+.||+|+||.||++..  +|..+|+|.+...... ...+.+|+.+|..++|+||+++++++..++..+|||||+
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            4677889999999999999998  7889999999865433 356889999999999999999999999999999999986

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.5e-15  Score=98.06  Aligned_cols=76  Identities=21%  Similarity=0.268  Sum_probs=61.4

Q ss_pred             cCCCcCC-eeeeCCCeEEEEEEE----CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQK-VITTGLGYELFKGFL----HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~-~lg~g~fg~v~~~~~----~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +++...+ .||+|+||.||+|.+    .+..||||.++.....  ...+.+|+.+|.+++||||++++|++. .+..+||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~-~~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeec-cCeEEEE
Confidence            3444455 499999999999976    3457999999754332  467999999999999999999999986 4568999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      |||+
T Consensus        87 mE~~   90 (285)
T d1u59a_          87 MEMA   90 (285)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9996

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-15  Score=98.11  Aligned_cols=77  Identities=14%  Similarity=0.183  Sum_probs=64.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe--CCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE--TENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~--~~~~~lv  127 (131)
                      ++|...+.||+|+||.||++..  +|..+|+|.+......   ...+.+|+.++..++||||+++++++..  +...+||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            4677789999999999999998  7889999999765322   3568899999999999999999998864  4568999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      |||+
T Consensus        84 mEy~   87 (269)
T d2java1          84 MEYC   87 (269)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9996

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-15  Score=98.71  Aligned_cols=77  Identities=10%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  ++..+|+|.+......    ...+.+|+.++..++|+||+++++++...+..+|||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            4577789999999999999998  6889999999754321    356899999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        88 Ey~   90 (288)
T d1uu3a_          88 SYA   90 (288)
T ss_dssp             CCC
T ss_pred             Ecc
Confidence            996

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3e-15  Score=98.14  Aligned_cols=77  Identities=19%  Similarity=0.310  Sum_probs=65.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      ++|...+.||+|+||.||+|..  ++..||+|.+......   ...+.+|+.++.+++|+||+++++++..++..++|+|
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            4677788999999999999998  6889999999654322   3568899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        82 ~~   83 (298)
T d1gz8a_          82 FL   83 (298)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-15  Score=98.63  Aligned_cols=78  Identities=15%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ...++|...+.||+|+||.||+|.+.+ .||+|.++.....   ...+.+|+.++.+++|+||++++|++.. +..+||+
T Consensus         5 i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~   82 (276)
T d1uwha_           5 IPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVT   82 (276)
T ss_dssp             CCTTCCCCCSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             cccccEEEEEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEE
Confidence            345678889999999999999998744 5999998754322   3678999999999999999999998854 5689999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        83 Ey~   85 (276)
T d1uwha_          83 QWC   85 (276)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            996

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.6e-15  Score=96.63  Aligned_cols=77  Identities=29%  Similarity=0.367  Sum_probs=64.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-C-C----eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-H-D----YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~-~----~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      +.|...+.||+|+||.||+|.+ . +    ..||+|.+......  ...|.+|+.++..++|+||++++|++...+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            3456678899999999999987 2 2    36899999754333  3568999999999999999999999998899999


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        87 v~e~~   91 (283)
T d1mqba_          87 ITEYM   91 (283)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99986

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.5e-15  Score=100.03  Aligned_cols=78  Identities=19%  Similarity=0.166  Sum_probs=63.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEe
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFE  129 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E  129 (131)
                      .+.|...+.||+|+||.||++..  ++..+|+|.+......  ...+.+|+.+|..++||||+++++++..++..+||||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            34577788999999999999998  6788999999754432  3557899999999999999999999999999999999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        88 ~~   89 (307)
T d1a06a_          88 LV   89 (307)
T ss_dssp             CC
T ss_pred             cc
Confidence            96

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=4.3e-15  Score=98.23  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  +|..+|+|.+......    ...+.+|+.++..++||||+++++++..++..++|+
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            4677788999999999999998  6889999999754322    356889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus        84 E~~   86 (316)
T d1fota_          84 DYI   86 (316)
T ss_dssp             CCC
T ss_pred             eec
Confidence            996

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.3e-15  Score=98.09  Aligned_cols=85  Identities=18%  Similarity=0.245  Sum_probs=72.3

Q ss_pred             HHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-C------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeE
Q 040342           47 ENELKIATKNYDRQKVITTGLGYELFKGFL-H------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGC  117 (131)
Q Consensus        47 ~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-~------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~  117 (131)
                      +.+++.+.++|...+.||+|+||.||+|.+ .      +..||+|.++.....  ...+.+|+.++..++|+|+++++++
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            345666778899999999999999999987 2      357999998754433  3669999999999999999999999


Q ss_pred             EEeCCeeEEEEeeC
Q 040342          118 CLETENPVLVFEYV  131 (131)
Q Consensus       118 ~~~~~~~~lv~E~~  131 (131)
                      +...+..++++||+
T Consensus        85 ~~~~~~~~~v~e~~   98 (301)
T d1lufa_          85 CAVGKPMCLLFEYM   98 (301)
T ss_dssp             ECSSSSCEEEEECC
T ss_pred             eccCCceEEEEEec
Confidence            99999999999985

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=94.59  Aligned_cols=70  Identities=21%  Similarity=0.294  Sum_probs=56.3

Q ss_pred             CeeeeCCCeEEEEEEE-C---CeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           61 KVITTGLGYELFKGFL-H---DYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        61 ~~lg~g~fg~v~~~~~-~---~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +.||+|+||.||+|.+ .   +..||+|.++.....   ...+.+|+.+|.+++||||++++|+|. .+..+|||||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~-~~~~~lvmE~~   89 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMA   89 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-SSSEEEEEECC
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEec-cCCEEEEEEcC
Confidence            4699999999999987 2   357999998653322   356999999999999999999999985 45679999996

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-15  Score=96.38  Aligned_cols=76  Identities=21%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEe-CCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLE-TENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||+|.+.|..||+|.++... ..+.+.+|+.++.+++|+||++++|++.. .+..+||+||+
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~   83 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   83 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             HHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEecc
Confidence            345667889999999999999988899999997543 24678999999999999999999999865 45689999985

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=96.42  Aligned_cols=78  Identities=10%  Similarity=0.042  Sum_probs=68.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      .++|...+.||+|+||.||++..  ++..+|+|.+......    ...+.+|+.+|..++||||+++++++...+..++|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            35677789999999999999998  7889999999754321    35688999999999999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        84 ~ey~   87 (337)
T d1o6la_          84 MEYA   87 (337)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            9996

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=95.29  Aligned_cols=77  Identities=19%  Similarity=0.278  Sum_probs=63.2

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCe--eEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDY--PVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~--~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|...+.||+|+||.||+|.+  ++.  .||+|.+......  ...+.+|+.+|..+ +|+||++++|++...+..+||
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            4566778999999999999998  554  4778887654332  35799999999998 699999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        90 ~ey~   93 (309)
T d1fvra_          90 IEYA   93 (309)
T ss_dssp             ECCC
T ss_pred             EEec
Confidence            9985

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-14  Score=93.05  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             cCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe----CCeeEEEEe
Q 040342           59 RQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE----TENPVLVFE  129 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~----~~~~~lv~E  129 (131)
                      ....||+|+||.||++..  ++..||+|.+......   ...+.+|+.+|.+++||||+++++++..    ....+||||
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE   92 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE   92 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEe
Confidence            345799999999999998  6778999998754322   3568899999999999999999999864    346799999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus        93 ~~   94 (270)
T d1t4ha_          93 LM   94 (270)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.3e-15  Score=95.86  Aligned_cols=77  Identities=17%  Similarity=0.267  Sum_probs=63.2

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--C---CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEE
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--H---DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVL  126 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~---~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~l  126 (131)
                      .++|...+.||+|+||.||+|.+  .   +..+|+|.+......  ...+.+|+.++.+++||||++++|++. .+..++
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEE
Confidence            45677789999999999999987  2   245888888654333  366899999999999999999999985 467899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        85 v~E~~   89 (273)
T d1mp8a_          85 IMELC   89 (273)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99986

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.53  E-value=3.2e-14  Score=92.42  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----------HHHHHHHHHHHhccC-CccccceeeEEEeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----------AEFCFNNIVFASQMN-HKNVIRLIGCCLET  121 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----------~~~~~~e~~~l~~l~-h~niv~l~g~~~~~  121 (131)
                      ++|...+.||+|+||.||++..  ++..+|+|.+......          ...+.+|+.++.+++ |+||+++++++..+
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            4567788999999999999998  7889999999754321          135789999999997 99999999999999


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..+|||||+
T Consensus        83 ~~~~ivmE~~   92 (277)
T d1phka_          83 TFFFLVFDLM   92 (277)
T ss_dssp             SEEEEEEECC
T ss_pred             cceEEEEEcC
Confidence            9999999996

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.7e-15  Score=98.17  Aligned_cols=82  Identities=15%  Similarity=0.250  Sum_probs=68.1

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEEC-------CeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFLH-------DYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE  120 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~~-------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~  120 (131)
                      +++..++|...+.||+|+||.||+|.+.       +..||||.++.....  ...+.+|+.++.+++|+||++++|.+..
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~   94 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   94 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             eeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEec
Confidence            3444567777889999999999999862       357999999754333  2568999999999999999999999998


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      .+..++|+||+
T Consensus        95 ~~~~~lv~e~~  105 (308)
T d1p4oa_          95 GQPTLVIMELM  105 (308)
T ss_dssp             SSSCEEEEECC
T ss_pred             CCceeEEEeec
Confidence            89999999986

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.52  E-value=2.3e-14  Score=93.25  Aligned_cols=77  Identities=18%  Similarity=0.230  Sum_probs=67.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      +.|...+.||+|+||.||+|.. .+..||+|.+......   ...+.+|+.+|..++|+||+++++.+...+..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            3566778999999999999998 7889999999764332   35688999999999999999999999999999999997


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        82 ~   82 (286)
T d1ob3a_          82 L   82 (286)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=3.7e-14  Score=91.96  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCC----ee
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETE----NP  124 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~----~~  124 (131)
                      +.|...+.||+|+||.||++..  ++..+|+|.+......    ...+.+|+.++..++|+||+++++++...+    ..
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            4577788999999999999998  7889999999754322    356889999999999999999999987643    37


Q ss_pred             EEEEeeC
Q 040342          125 VLVFEYV  131 (131)
Q Consensus       125 ~lv~E~~  131 (131)
                      +|||||+
T Consensus        87 ~lvmE~~   93 (277)
T d1o6ya_          87 YIVMEYV   93 (277)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            8999986

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=94.45  Aligned_cols=76  Identities=20%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             CCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeCC----eeEEEEeeC
Q 040342           56 NYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLETE----NPVLVFEYV  131 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~----~~~lv~E~~  131 (131)
                      .|...+.||+|+||.||+|.++|..||+|.++...........|+..+..++|+||++++|++...+    ..+||+||+
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~   83 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH   83 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred             EEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecc
Confidence            4555778999999999999998899999998754433222334444556788999999999997643    578999996

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=94.39  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             CCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh------HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA------AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~------~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      .+.||+|+||.||+|..  .|..||+|.+......      ...+.+|+.++..++|+||+++++++..++..+|||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            46799999999999998  6889999998654322      145889999999999999999999999999999999985

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.8e-14  Score=93.78  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHh-ccCCccccceeeEEEeCCeeEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFAS-QMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~-~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      ++|...+.||+|+||.||++..  ++..||+|.+......    ...+..|..++. .++||||+++++++..++..+||
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            4577788999999999999998  7899999999753321    244667776655 68999999999999999999999


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        82 mEy~   85 (320)
T d1xjda_          82 MEYL   85 (320)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            9996

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=95.56  Aligned_cols=82  Identities=17%  Similarity=0.257  Sum_probs=68.3

Q ss_pred             HHHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEE
Q 040342           50 LKIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCL  119 (131)
Q Consensus        50 ~~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~  119 (131)
                      ++...+.|...+.||+|+||.||+|.+       .+..||+|.++.....  ...+.+|+.++..+ +|+||++++|++.
T Consensus        18 ~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~   97 (311)
T d1t46a_          18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (311)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEe
Confidence            344556777788999999999999986       2357999999865433  35688999999998 6999999999999


Q ss_pred             eCCeeEEEEeeC
Q 040342          120 ETENPVLVFEYV  131 (131)
Q Consensus       120 ~~~~~~lv~E~~  131 (131)
                      .....+|++||+
T Consensus        98 ~~~~~~lvmE~~  109 (311)
T d1t46a_          98 IGGPTLVITEYC  109 (311)
T ss_dssp             SSSSCEEEEECC
T ss_pred             eCCEEEEEEEcC
Confidence            988999999986

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=95.54  Aligned_cols=80  Identities=20%  Similarity=0.366  Sum_probs=64.9

Q ss_pred             HhhcCCCcCCeeeeCCCeEEEEEEE--CC-----eeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEeC
Q 040342           52 IATKNYDRQKVITTGLGYELFKGFL--HD-----YPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLET  121 (131)
Q Consensus        52 ~~~~~~~~~~~lg~g~fg~v~~~~~--~~-----~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~~  121 (131)
                      ...++|...+.||+|+||.||+|.+  .+     ..||+|.+......  ...+.+|+.++.++ +|+||+++++++...
T Consensus        34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~  113 (325)
T d1rjba_          34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  113 (325)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC
Confidence            4456777889999999999999987  22     25899988654333  35688999999988 799999999999999


Q ss_pred             CeeEEEEeeC
Q 040342          122 ENPVLVFEYV  131 (131)
Q Consensus       122 ~~~~lv~E~~  131 (131)
                      +..+||+||+
T Consensus       114 ~~~~lv~Ey~  123 (325)
T d1rjba_         114 GPIYLIFEYC  123 (325)
T ss_dssp             SSCEEEEECC
T ss_pred             CeEEEEEEcC
Confidence            9999999996

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=91.19  Aligned_cols=72  Identities=22%  Similarity=0.413  Sum_probs=59.2

Q ss_pred             CCeeeeCCCeEEEEEEE-C-C---eeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEe-CCeeEEEEeeC
Q 040342           60 QKVITTGLGYELFKGFL-H-D---YPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLE-TENPVLVFEYV  131 (131)
Q Consensus        60 ~~~lg~g~fg~v~~~~~-~-~---~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~-~~~~~lv~E~~  131 (131)
                      .++||+|+||.||+|.+ . +   ..||||.++.....  ...|.+|+.+|.+++|+||++++|++.. +...++|+||+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            46799999999999998 2 2   25899998753322  3679999999999999999999999876 45789999986

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=9.2e-14  Score=92.93  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVF  128 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~  128 (131)
                      ++|...+.||+|+||.||++..  +|..+|+|.+......    ...+.+|+.+|..++|+||+++++++......++|+
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            4677788999999999999998  7889999998753322    256889999999999999999999999999999999


Q ss_pred             eeC
Q 040342          129 EYV  131 (131)
Q Consensus       129 E~~  131 (131)
                      ||+
T Consensus       121 e~~  123 (350)
T d1rdqe_         121 EYV  123 (350)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            985

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-13  Score=88.99  Aligned_cols=76  Identities=22%  Similarity=0.333  Sum_probs=65.9

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEEEee
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLVFEY  130 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv~E~  130 (131)
                      .|...+.||+|+||.||+|..  ++..||+|.++.....   ...+.+|+.++..++|+||+++++.+......++++|+
T Consensus         3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~   82 (292)
T d1unla_           3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeee
Confidence            466678999999999999998  7788999999654322   36788999999999999999999999999999999987


Q ss_pred             C
Q 040342          131 V  131 (131)
Q Consensus       131 ~  131 (131)
                      +
T Consensus        83 ~   83 (292)
T d1unla_          83 C   83 (292)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=1.9e-13  Score=91.78  Aligned_cols=77  Identities=6%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh----HHHHHHH---HHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA----AEFCFNN---IVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~----~~~~~~e---~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      ++|...+.||+|+||.||++..  +|..+|+|.+......    ...+.+|   +.++..++||||+++++++...+..+
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            5677889999999999999998  7889999998753321    1223344   56677788999999999999999999


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      |||||+
T Consensus        84 ivmE~~   89 (364)
T d1omwa3          84 FILDLM   89 (364)
T ss_dssp             EEECCC
T ss_pred             EEEEec
Confidence            999996

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.9e-13  Score=89.30  Aligned_cols=75  Identities=20%  Similarity=0.411  Sum_probs=58.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCe----eEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCCeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDY----PVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~----~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lv  127 (131)
                      +|...+.||+|+||.||+|.+  +|.    .||+|.+......  ...+.+|+.++.+++||||++++|+|..+ ..+++
T Consensus        10 dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~v   88 (317)
T d1xkka_          10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLI   88 (317)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEEE
T ss_pred             HCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeEE
Confidence            577788999999999999987  443    5889988654322  46799999999999999999999999765 46677


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        89 ~e~~   92 (317)
T d1xkka_          89 TQLM   92 (317)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            7764

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.5e-14  Score=90.72  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=54.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE---CC--eeEEEEEEecCchh----HHHHHHHHHHHhccCCccccceeeEEEeCCeeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL---HD--YPVSIMKFVNSDYA----AEFCFNNIVFASQMNHKNVIRLIGCCLETENPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~---~~--~~vavk~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~  125 (131)
                      .+|...+.||+|+||.||+|.+   .+  ..||+|.+......    ...|.+|+.+|.+++|+||++++|++.. +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            3466678899999999999987   22  36899988653221    3578999999999999999999999965 5678


Q ss_pred             EEEeeC
Q 040342          126 LVFEYV  131 (131)
Q Consensus       126 lv~E~~  131 (131)
                      +|+||+
T Consensus        87 lv~e~~   92 (273)
T d1u46a_          87 MVTELA   92 (273)
T ss_dssp             EEEECC
T ss_pred             eeeeee
Confidence            999985

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-13  Score=91.35  Aligned_cols=77  Identities=26%  Similarity=0.337  Sum_probs=63.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe------CCe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE------TEN  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~------~~~  123 (131)
                      ..|...+.||+|+||.||+|..  +|..+|+|.+......   ...+.+|+.++..++|+||+++++++..      ...
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            4577788999999999999998  6899999999754322   3568899999999999999999999863      357


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      +++|+||+
T Consensus        97 ~~iv~Ey~  104 (355)
T d2b1pa1          97 VYLVMELM  104 (355)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEecc
Confidence            89999986

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=91.99  Aligned_cols=78  Identities=19%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEeCC------
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLETE------  122 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~~~------  122 (131)
                      .+.|...+.||+|+||.||+|..  +|..||+|.+......   ...+.+|+.+|..++|+|++++++++...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            34677788999999999999998  6889999999753222   356889999999999999999999997544      


Q ss_pred             eeEEEEeeC
Q 040342          123 NPVLVFEYV  131 (131)
Q Consensus       123 ~~~lv~E~~  131 (131)
                      ..+||+||+
T Consensus        97 ~~~lv~e~~  105 (346)
T d1cm8a_          97 DFYLVMPFM  105 (346)
T ss_dssp             CCEEEEECC
T ss_pred             eEEEEEecc
Confidence            469999985

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.42  E-value=4.5e-13  Score=88.61  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-CccccceeeEEEe--CCeeEEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-HKNVIRLIGCCLE--TENPVLVFE  129 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~g~~~~--~~~~~lv~E  129 (131)
                      ++|...+.||+|+||.||+|..  ++..||+|.++...  ...+.+|+.+|..+. |+||+++++++..  ....++|||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e  112 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE  112 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC--HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH--HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEe
Confidence            4677788999999999999998  78899999997643  356789999999996 9999999999874  356899999


Q ss_pred             eC
Q 040342          130 YV  131 (131)
Q Consensus       130 ~~  131 (131)
                      |+
T Consensus       113 ~~  114 (328)
T d3bqca1         113 HV  114 (328)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.1e-13  Score=88.45  Aligned_cols=78  Identities=23%  Similarity=0.348  Sum_probs=61.8

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe--------
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE--------  120 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~--------  120 (131)
                      .+.|...+.||+|+||.||+|..  +|..||+|.+......   ...+.+|+.+|..++|+|++++++.+..        
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            35677889999999999999998  7889999998644322   3568899999999999999999998754        


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      ....++++||+
T Consensus        89 ~~~~~iv~e~~   99 (318)
T d3blha1          89 KGSIYLVFDFC   99 (318)
T ss_dssp             --CEEEEEECC
T ss_pred             CceEEEEEecc
Confidence            23578999985

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-13  Score=89.05  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=64.5

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh-------HHHHHHHHHHHhccC--CccccceeeEEEeCCe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA-------AEFCFNNIVFASQMN--HKNVIRLIGCCLETEN  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~-------~~~~~~e~~~l~~l~--h~niv~l~g~~~~~~~  123 (131)
                      +.|...+.||+|+||.||+|..  ++..||+|.+......       ...+.+|+.++..++  |+||+++++++..++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4577788999999999999998  7889999998753211       133678999999886  8999999999999999


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++|+||+
T Consensus        84 ~~lv~e~~   91 (273)
T d1xwsa_          84 FVLILERP   91 (273)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            99999984

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.5e-13  Score=89.46  Aligned_cols=73  Identities=23%  Similarity=0.277  Sum_probs=60.2

Q ss_pred             CCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccceeeEEEeC------CeeEEE
Q 040342           56 NYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRLIGCCLET------ENPVLV  127 (131)
Q Consensus        56 ~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~------~~~~lv  127 (131)
                      .|...++||+|+||.||++..  .+..||+|.+......   ..+|+.+|..++|+||+++++++...      .+++||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~---~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv   97 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF---KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV   97 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS---CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH---HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEE
Confidence            456678899999999999998  6889999999764322   34799999999999999999998542      357899


Q ss_pred             EeeC
Q 040342          128 FEYV  131 (131)
Q Consensus       128 ~E~~  131 (131)
                      +||+
T Consensus        98 ~Ey~  101 (350)
T d1q5ka_          98 LDYV  101 (350)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9986

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.7e-13  Score=87.23  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             hhcCCCcCCeeeeCCCeEEEEEEE--C-------CeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceeeEEEe
Q 040342           53 ATKNYDRQKVITTGLGYELFKGFL--H-------DYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIGCCLE  120 (131)
Q Consensus        53 ~~~~~~~~~~lg~g~fg~v~~~~~--~-------~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g~~~~  120 (131)
                      ..+.|...+.||+|+||.||++..  .       +..||+|.++.....  ...+.+|...+.++ +|+||+++++++..
T Consensus        11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            345677788999999999999986  2       136899999765433  36788888888887 79999999999999


Q ss_pred             CCeeEEEEeeC
Q 040342          121 TENPVLVFEYV  131 (131)
Q Consensus       121 ~~~~~lv~E~~  131 (131)
                      +...++|+||+
T Consensus        91 ~~~~~~v~e~~  101 (299)
T d1fgka_          91 DGPLYVIVEYA  101 (299)
T ss_dssp             SSSCEEEECCC
T ss_pred             CCeEEEEEEcc
Confidence            99999999986

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-12  Score=84.63  Aligned_cols=73  Identities=10%  Similarity=0.217  Sum_probs=58.8

Q ss_pred             cCCCcC-CeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhc-cCCccccceeeEEEe----CCeeEE
Q 040342           55 KNYDRQ-KVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQ-MNHKNVIRLIGCCLE----TENPVL  126 (131)
Q Consensus        55 ~~~~~~-~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~-l~h~niv~l~g~~~~----~~~~~l  126 (131)
                      ++|... +.||+|+||.||++..  ++..||+|.++..    ..+.+|+.++.+ .+|+||+++++++..    ....+|
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~i   86 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI   86 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEE
Confidence            466654 4699999999999998  7889999998753    346688888655 479999999998864    357899


Q ss_pred             EEeeC
Q 040342          127 VFEYV  131 (131)
Q Consensus       127 v~E~~  131 (131)
                      |+||+
T Consensus        87 vmEy~   91 (335)
T d2ozaa1          87 VMECL   91 (335)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99996

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3e-12  Score=83.61  Aligned_cols=85  Identities=12%  Similarity=0.214  Sum_probs=63.5

Q ss_pred             HHHHHHhhcCCCcCCeeeeCCCeEEEEEEE-------CCeeEEEEEEecCchh--HHHHHHHHHHHhcc-CCccccceee
Q 040342           47 ENELKIATKNYDRQKVITTGLGYELFKGFL-------HDYPVSIMKFVNSDYA--AEFCFNNIVFASQM-NHKNVIRLIG  116 (131)
Q Consensus        47 ~~~~~~~~~~~~~~~~lg~g~fg~v~~~~~-------~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l-~h~niv~l~g  116 (131)
                      ..+++...++|...+.||+|+||.||+|.+       ++..||+|.+......  ...+..|..++.++ +|+||+.+.+
T Consensus         5 ~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~   84 (299)
T d1ywna1           5 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   84 (299)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeee
Confidence            345555667788899999999999999986       2357999998754333  35677888777776 5899999999


Q ss_pred             EEEeC-CeeEEEEeeC
Q 040342          117 CCLET-ENPVLVFEYV  131 (131)
Q Consensus       117 ~~~~~-~~~~lv~E~~  131 (131)
                      .+... ...++|+||+
T Consensus        85 ~~~~~~~~~~iv~E~~  100 (299)
T d1ywna1          85 ACTKPGGPLMVIVEFC  100 (299)
T ss_dssp             EECSTTSCCEEEEECC
T ss_pred             eeccCCCeEEEEEEec
Confidence            88654 4689999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-12  Score=86.61  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE-----CCeeEEEEEEecCch-----hHHHHHHHHHHHhccCC-ccccceeeEEEeCCe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL-----HDYPVSIMKFVNSDY-----AAEFCFNNIVFASQMNH-KNVIRLIGCCLETEN  123 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~-----~~~~vavk~~~~~~~-----~~~~~~~e~~~l~~l~h-~niv~l~g~~~~~~~  123 (131)
                      ++|...+.||+|+||.||++..     .|..+|+|.++....     ....+.+|+.++.+++| +||+++++.+.....
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            5677889999999999999976     367899999864321     13568899999999976 899999999999999


Q ss_pred             eEEEEeeC
Q 040342          124 PVLVFEYV  131 (131)
Q Consensus       124 ~~lv~E~~  131 (131)
                      .++++||+
T Consensus       104 ~~~v~e~~  111 (322)
T d1vzoa_         104 LHLILDYI  111 (322)
T ss_dssp             EEEEECCC
T ss_pred             eeeeeecc
Confidence            99999985

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.4e-12  Score=84.40  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh--HHHHHHHHHHHhccCCccccceeeEEEeCC-----eeE
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA--AEFCFNNIVFASQMNHKNVIRLIGCCLETE-----NPV  125 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~g~~~~~~-----~~~  125 (131)
                      +.|.....||+|+||.||+|..  +|..+|+|.+......  ...+.+|+.+|..++|+|++++++.+....     ..+
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~   87 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY   87 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence            3577788999999999999987  7889999999754322  356889999999999999999999986543     345


Q ss_pred             EEEe
Q 040342          126 LVFE  129 (131)
Q Consensus       126 lv~E  129 (131)
                      ++++
T Consensus        88 l~~~   91 (345)
T d1pmea_          88 LVTH   91 (345)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.3e-12  Score=82.97  Aligned_cols=78  Identities=22%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEE---CCeeEEEEEEecCchh---HHHHHHHHHHHhcc---CCccccceeeEEEe----
Q 040342           54 TKNYDRQKVITTGLGYELFKGFL---HDYPVSIMKFVNSDYA---AEFCFNNIVFASQM---NHKNVIRLIGCCLE----  120 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~---~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l---~h~niv~l~g~~~~----  120 (131)
                      .+.|.....||+|+||.||++..   .+..||+|.+......   ...+.+|+.++..+   +|+||+++++++..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            45678889999999999999987   3567999998653322   23466788777665   79999999998853    


Q ss_pred             -CCeeEEEEeeC
Q 040342          121 -TENPVLVFEYV  131 (131)
Q Consensus       121 -~~~~~lv~E~~  131 (131)
                       ....++++||+
T Consensus        86 ~~~~~~~~~e~~   97 (305)
T d1blxa_          86 RETKLTLVFEHV   97 (305)
T ss_dssp             SEEEEEEEEECC
T ss_pred             cCceEEEEEEec
Confidence             24678999985

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.2e-12  Score=83.97  Aligned_cols=66  Identities=18%  Similarity=0.270  Sum_probs=56.0

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchh---HHHHHHHHHHHhccCCccccceeeEEEe
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYA---AEFCFNNIVFASQMNHKNVIRLIGCCLE  120 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~g~~~~  120 (131)
                      +.|...+.||+|+||.||+|..  +|..||+|.+......   ...+.+|+.+|..++|+|++++++++..
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~   88 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   88 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECS
T ss_pred             CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            4577788999999999999997  7899999999754322   3568899999999999999999999853

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=2.8e-11  Score=78.83  Aligned_cols=76  Identities=16%  Similarity=0.055  Sum_probs=64.1

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCC-ccccceeeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH-KNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ++|...+.||+|+||.||+|..  ++..+|+|.+..... ...+.+|+..+..+.| +|++.+.++...+...++|+||+
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~   83 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   83 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC-cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec
Confidence            4677889999999999999998  788999998865432 2446788888988875 89999999999999999999985

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=6.5e-11  Score=77.16  Aligned_cols=76  Identities=17%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             cCCCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccCCccccce-eeEEEeCCeeEEEEeeC
Q 040342           55 KNYDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNHKNVIRL-IGCCLETENPVLVFEYV  131 (131)
Q Consensus        55 ~~~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h~niv~l-~g~~~~~~~~~lv~E~~  131 (131)
                      +.|...+.||+|+||.||+|..  ++..||+|.+..... ...+..|+.++..++|+|++.. .++...++..++|+||+
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~   85 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   85 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEc
Confidence            3477788999999999999998  688999998875432 2457889999999987765554 55556788889999985

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4e-09  Score=70.02  Aligned_cols=73  Identities=11%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             CCcCCeeeeCCCeEEEEEEE--CCeeEEEEEEecCchhHHHHHHHHHHHhccC-----------CccccceeeEEEe--C
Q 040342           57 YDRQKVITTGLGYELFKGFL--HDYPVSIMKFVNSDYAAEFCFNNIVFASQMN-----------HKNVIRLIGCCLE--T  121 (131)
Q Consensus        57 ~~~~~~lg~g~fg~v~~~~~--~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~g~~~~--~  121 (131)
                      |...+.||+|+||.||+|..  +|..||+|.++........+.+|+.++..+.           |+|++++++++..  .
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~   94 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP   94 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccc
Confidence            77789999999999999998  7899999999876544566778888877664           5778889888754  3


Q ss_pred             CeeEEEEe
Q 040342          122 ENPVLVFE  129 (131)
Q Consensus       122 ~~~~lv~E  129 (131)
                      ...+++++
T Consensus        95 ~~~~~~~~  102 (362)
T d1q8ya_          95 NGVHVVMV  102 (362)
T ss_dssp             TEEEEEEE
T ss_pred             cceeeeee
Confidence            34444444

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.69  E-value=6.2e-08  Score=58.89  Aligned_cols=69  Identities=9%  Similarity=0.044  Sum_probs=50.1

Q ss_pred             cCCeeeeCCCeEEEEEEE-CCeeEEEEEEecCchh-------------------HHHHHHHHHHHhccCCccccceeeEE
Q 040342           59 RQKVITTGLGYELFKGFL-HDYPVSIMKFVNSDYA-------------------AEFCFNNIVFASQMNHKNVIRLIGCC  118 (131)
Q Consensus        59 ~~~~lg~g~fg~v~~~~~-~~~~vavk~~~~~~~~-------------------~~~~~~e~~~l~~l~h~niv~l~g~~  118 (131)
                      ..+.||+|+||.||.|.. +|..+|+|.++.....                   ......|...+..+.|.+++..++..
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            367899999999999998 8899999987542110                   12245677888889999988876543


Q ss_pred             EeCCeeEEEEeeC
Q 040342          119 LETENPVLVFEYV  131 (131)
Q Consensus       119 ~~~~~~~lv~E~~  131 (131)
                          ..++++||+
T Consensus        84 ----~~~lvme~~   92 (191)
T d1zara2          84 ----GNAVLMELI   92 (191)
T ss_dssp             ----TTEEEEECC
T ss_pred             ----CCEEEEEee
Confidence                236888874

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.20  E-value=0.2  Score=30.40  Aligned_cols=78  Identities=6%  Similarity=-0.125  Sum_probs=47.9

Q ss_pred             hcCCCcCCeeeeCCCeEEEEEEECCeeEEEEEEecCchh-HHHHHHHHHHHhccC-CccccceeeEEEeCCeeEEEEeeC
Q 040342           54 TKNYDRQKVITTGLGYELFKGFLHDYPVSIMKFVNSDYA-AEFCFNNIVFASQMN-HKNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        54 ~~~~~~~~~lg~g~fg~v~~~~~~~~~vavk~~~~~~~~-~~~~~~e~~~l~~l~-h~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      ...+......+-++.+.||.....+..+.+|........ ...+.+|...+..+. +-.+.+++.....++..++|++++
T Consensus        13 ~~~~~~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l   92 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA   92 (263)
T ss_dssp             HTTSEEEECSCCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             hhceEEEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEec
Confidence            344433333333344678877665566778876644322 234667777776554 434567777777788889999874

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=84.05  E-value=2.6  Score=24.94  Aligned_cols=67  Identities=10%  Similarity=-0.010  Sum_probs=42.6

Q ss_pred             eeeCC-CeEEEEEEE-CCeeEEEEEEecCchhHHHHHHHHHHHhccCC--ccccceeeEEEeCCeeEEEEeeC
Q 040342           63 ITTGL-GYELFKGFL-HDYPVSIMKFVNSDYAAEFCFNNIVFASQMNH--KNVIRLIGCCLETENPVLVFEYV  131 (131)
Q Consensus        63 lg~g~-fg~v~~~~~-~~~~vavk~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~g~~~~~~~~~lv~E~~  131 (131)
                      +..|. -+.||.... .+..+.+|......  ...+..|...+..+..  -.+.+++.....++..++|++|+
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~--~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i   88 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV   88 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccC--HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEee
Confidence            33443 356888777 56667888765433  2335677777665542  33556677777777889999875