Citrus Sinensis ID: 040356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MGKYQLTSFLIVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQCPPIN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHEHHHHcccEEEEEcccccccccHHHHHHHcHHHHHHHHHHHHHHHHcHEEccccHHHHHHHHHcccccccccEccccc
Coil and Loop (DISEMBL)
MGKYQLTSFLIVLLNSGALLsslacdcskptppppsspncpppphspspkppprppkvkptppppavkpppppkvkttppppvvkpppppkvkpstppppvvkpppppkekptpppvvkspptppnvryppppkqqktcpinalklSACVDVLGGLIqiglgdsakekccpllhglvDLDAAICLCTAIrikapnlinllVPISLQVLVndcgkyppagfqcppin
Flexible Loop (DISEMBL)
MGKYQLTSFLIVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKyppagfqcppin
Low Complexity Region (SEG)
MGKYQLTSFLIVllnsgallsslaCDCskptppppsspncpppphspspkppprppkvkptppppavkpppppkvkttppppvvkpppppkvkpstppppvvkpppppkekptpppvvkspptppnvryppppKQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQCPPIN
Disordered region (IsUnstruct)
***YQLTSFLIVLLNSGALLSSLACDC***************************************************************************************************************CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGF******
Disordered Region (DISOPRED)
****QLTSFLIVLLNSGALLSSLACDC***************************PPKVKPTPPPPAVKPP********************************************************************CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQCPP**
Disordered Region (DISEMBL)
MGKYQLTSFLIVLLNSGALLSSLACD**************************************************************************************************PNVRYP********CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQCPPIN
Disordered Region (DISPRO)
*GKYQLTSFLIVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVK*STPPP*************************************KTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQCP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKYQLTSFLIVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQCPPIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q00451	346	36.4 kDa proline-rich pro	N/A	no	0.384	0.251	0.738	1e-24
Q01595	129	Cortical cell-delineating	N/A	no	0.389	0.682	0.510	6e-16
P14009	137	14 kDa proline-rich prote	N/A	no	0.362	0.598	0.471	4e-12
Q8RW93	128	Putative lipid-binding pr	no	no	0.407	0.718	0.414	5e-12

>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           Q TCPI+ALKL ACVDVLGGLI IG+G SAK+ CCPLL GLVDLDAAICLCT IR+K  N
Sbjct: 258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLN 317

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQCP 223
            IN+++PI+LQVL++DCGKYPP  F+CP
Sbjct: 318 -INIILPIALQVLIDDCGKYPPKDFKCP 344

Solanum lycopersicum (taxid: 4081)

>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 132 PPKQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRI 191
                  CPI+ALKL  C  VLG L+++GL     E+CCPLL GLVDLDAA+CLCTAI+ 
Sbjct: 41  SSHSHGRCPIDALKLKVCAKVLG-LVKVGL--PQYEQCCPLLEGLVDLDAALCLCTAIKA 97

Query: 192 KAPNLINLLVPISLQVLVNDCGKYPPAGFQCP 223
                I+L VP+SL  ++N+CG+  P  F CP
Sbjct: 98  NVLG-IHLNVPLSLNFILNNCGRICPEDFTCP 128

Delineates a novel subset of developing cortical cells. It is probably involved in some aspect of transport of molecules to or from the vasculature.

Zea mays (taxid: 4577)

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 5/87 (5%)

Query: 139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLI- 197
           CP +ALKL  C DVL  +  + +G      CC LL GLV+L+AA+CLCTAI+    N++ 
Sbjct: 54  CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIK---ANILG 110

Query: 198 -NLLVPISLQVLVNDCGKYPPAGFQCP 223
            NL +PI+L +++N+CGK  P GF+C 
Sbjct: 111 KNLNLPIALSLVLNNCGKQVPNGFECT 137

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.

Daucus carota (taxid: 4039)

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 130 PPPPKQQKT-CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTA 188
           PPP KQ  T CP + LK   C   LG L+   +G    ++CC L+ GL D +AA+CLCTA
Sbjct: 36  PPPAKQATTKCPRDTLKFGVCGSWLG-LVSEVIGTPPSQECCSLIKGLADFEAAVCLCTA 94

Query: 189 IRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQC 222
           ++     +  + +P++L +L+N CGK  P GF C
Sbjct: 95  LKTSILGVAPVKIPVALTLLLNSCGKNVPQGFVC 128


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.141    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,966,180
Number of Sequences: 539616
Number of extensions: 8755893
Number of successful extensions: 362833
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3708
Number of HSP's successfully gapped in prelim test: 2569
Number of HSP's that attempted gapping in prelim test: 69891
Number of HSP's gapped (non-prelim): 91531
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
145332667	1480	bifunctional inhibitor/lipid transfer pr	0.473	0.072	0.601	6e-30
15022163	407	putative proline-rich protein [Solanum p	0.380	0.211	0.715	9e-29
297835204	722	predicted protein [Arabidopsis lyrata su	0.384	0.120	0.651	6e-28
449456667	254	PREDICTED: uncharacterized protein LOC10	0.384	0.342	0.685	1e-27
449518449	143	PREDICTED: 36.4 kDa proline-rich protein	0.384	0.608	0.685	2e-27
296087554	135	unnamed protein product [Vitis vinifera]	0.384	0.644	0.674	2e-27
118486411	179	unknown [Populus trichocarpa]	0.384	0.486	0.696	3e-27
224104875	179	predicted protein [Populus trichocarpa]	0.384	0.486	0.696	5e-27
255559090	299	Repetitive proline-rich cell wall protei	0.384	0.290	0.696	2e-26
224086363	85	predicted protein [Populus trichocarpa]	0.376	1.0	0.701	2e-26

>gi|145332667|ref|NP_001078199.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana] gi|11994733|dbj|BAB03062.1| unnamed protein product [Arabidopsis thaliana] gi|332643072|gb|AEE76593.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana]

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 86/113 (76%), Gaps = 6/113 (5%)

Query: 115  PPVVKSP-PTPPNVRYP---PPPKQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCC 170
            PPV  SP  TPP  + P   PP    KTCPI+ LKL +CVD+LGGL+ IG+G SAKEKCC
Sbjct: 1369 PPVASSPIATPPIAKTPIATPPTTMPKTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCC 1428

Query: 171  PLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQCP 223
            P++ GLVDLDAA+CLCT I+ K  N I++++PI+L+VL+N CGK PP GF+CP
Sbjct: 1429 PVVEGLVDLDAAVCLCTTIKAKLLN-IDVILPIALEVLLN-CGKNPPPGFKCP 1479

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15022163|gb|AAC49600.2| putative proline-rich protein [Solanum palustre]

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%), Gaps = 2/88 (2%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           Q TCPI+AL + ACVDVLGGLI IG G SAK+ CCPLL GLVDLDAAICLCT IR+K  N
Sbjct: 320 QPTCPIDALNVGACVDVLGGLIHIGTGGSAKQTCCPLL-GLVDLDAAICLCTTIRLKLLN 378

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQCP 223
            IN+++PI+LQVL++DCGKYPP  F+CP
Sbjct: 379 -INIILPIALQVLIDDCGKYPPKDFKCP 405

Source: Solanum palustre

Species: Solanum palustre

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835204|ref|XP_002885484.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331324|gb|EFH61743.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 73/89 (82%), Gaps = 2/89 (2%)

Query: 135 QQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAP 194
           + KTCPI+ LKL +CVDVLGGL+ IG+G SAK+KCCP+L GLVDLDAA+CLCT I+ K  
Sbjct: 473 KPKTCPIDTLKLGSCVDVLGGLVHIGIGQSAKQKCCPVLEGLVDLDAAVCLCTTIKAKLL 532

Query: 195 NLINLLVPISLQVLVNDCGKYPPAGFQCP 223
           N I+L+ PI+L+VL+  CGK PP GF+CP
Sbjct: 533 N-IDLVFPIALEVLLG-CGKKPPPGFKCP 559

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456667|ref|XP_004146070.1| PREDICTED: uncharacterized protein LOC101218239 [Cucumis sativus]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 76/89 (85%), Gaps = 2/89 (2%)

Query: 135 QQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAP 194
           +++TCPI+ LKL ACVD+LGGLI IG+GD  K+ CCP+L GLVDLDAA+CLCT I+ K  
Sbjct: 166 KRETCPIDTLKLGACVDLLGGLIHIGIGDRTKQTCCPVLEGLVDLDAAVCLCTTIKAKLL 225

Query: 195 NLINLLVPISLQVLVNDCGKYPPAGFQCP 223
           N INL++PI+LQVLV DCGK+PP+GFQCP
Sbjct: 226 N-INLIIPIALQVLV-DCGKHPPSGFQCP 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518449|ref|XP_004166254.1| PREDICTED: 36.4 kDa proline-rich protein-like, partial [Cucumis sativus]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 76/89 (85%), Gaps = 2/89 (2%)

Query: 135 QQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAP 194
           +++TCPI+ LKL ACVD+LGGLI IG+GD  K+ CCP+L GLVDLDAA+CLCT I+ K  
Sbjct: 55  KRETCPIDTLKLGACVDLLGGLIHIGIGDRTKQTCCPVLEGLVDLDAAVCLCTTIKAKLL 114

Query: 195 NLINLLVPISLQVLVNDCGKYPPAGFQCP 223
           N INL++PI+LQVLV DCGK+PP+GFQCP
Sbjct: 115 N-INLIIPIALQVLV-DCGKHPPSGFQCP 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087554|emb|CBI34143.3| unnamed protein product [Vitis vinifera]

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 76/89 (85%), Gaps = 2/89 (2%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           Q+TCPI+ LKL ACVD+LGGL+ IG+G SAK+ CCP+L GLVDLDAA+CLCTAI++K  N
Sbjct: 49  QQTCPIDTLKLGACVDLLGGLVHIGIGSSAKDTCCPVLQGLVDLDAAVCLCTAIKVKLLN 108

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQCPP 224
            +N+++PI+LQVLV  CGK PP+GFQCP 
Sbjct: 109 -VNIIIPIALQVLVG-CGKTPPSGFQCPA 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486411|gb|ABK95045.1| unknown [Populus trichocarpa]

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 75/89 (84%), Gaps = 2/89 (2%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           Q+TCPI+ LKL ACVDVLGGLI IG+G SAK++CCPLL GLVDLDAA+CLCT I+ K  N
Sbjct: 93  QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 152

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQCPP 224
            INL++PI+L++LV DCGK PP GF+CP 
Sbjct: 153 -INLILPIALELLV-DCGKTPPEGFKCPS 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104875|ref|XP_002333889.1| predicted protein [Populus trichocarpa] gi|222838950|gb|EEE77301.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 75/89 (84%), Gaps = 2/89 (2%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           Q+TCPI+ LKL ACVDVLGGLI IG+G SAK++CCPLL GLVDLDAA+CLCT I+ K  N
Sbjct: 93  QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 152

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQCPP 224
            INL++PI+L++LV DCGK PP GF+CP 
Sbjct: 153 -INLILPIALELLV-DCGKNPPEGFKCPS 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559090|ref|XP_002520567.1| Repetitive proline-rich cell wall protein 2 precursor, putative [Ricinus communis] gi|223540227|gb|EEF41800.1| Repetitive proline-rich cell wall protein 2 precursor, putative [Ricinus communis]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           Q+TCPI+ LKL ACVDVLGGLI IG+G SAK+ CCP+L GLVDLDAA+CLCT I+ K  N
Sbjct: 213 QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDACCPVLQGLVDLDAALCLCTTIKAKLLN 272

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQCPP 224
           L N+++PI+L+VLV DCGK PP GFQCP 
Sbjct: 273 L-NIIIPIALEVLV-DCGKNPPPGFQCPA 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086363|ref|XP_002307865.1| predicted protein [Populus trichocarpa] gi|222853841|gb|EEE91388.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 74/87 (85%), Gaps = 2/87 (2%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           Q+TCPI+ LKL ACVDVLGGLI IG+G SAK++CCPLL GLVDLDAA+CLCT I+ K  N
Sbjct: 1   QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 60

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQC 222
            INL++PI+L++LV DCGK PP GF+C
Sbjct: 61  -INLILPIALELLV-DCGKTPPEGFKC 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2203876	297	AT1G62500 [Arabidopsis thalian	0.393	0.299	0.615	8.2e-28
TAIR|locus:4010713767	1480	AT3G22142 "AT3G22142" [Arabido	0.376	0.057	0.655	3.6e-27
TAIR|locus:2090419	334	CWLP "cell wall-plasma membran	0.376	0.254	0.647	1.2e-26
TAIR|locus:2041927	291	AT2G10940 [Arabidopsis thalian	0.367	0.285	0.623	1.4e-25
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.371	0.521	0.564	1.9e-21
TAIR|locus:2135610	168	EARLI1 "EARLY ARABIDOPSIS ALUM	0.367	0.494	0.571	3.9e-21
TAIR|locus:2135635	177	AT4G12500 [Arabidopsis thalian	0.367	0.468	0.559	8e-21
TAIR|locus:2135625	182	AT4G12490 [Arabidopsis thalian	0.367	0.456	0.547	8e-21
TAIR|locus:2135545	129	AT4G12510 [Arabidopsis thalian	0.389	0.682	0.516	3.1e-19
TAIR|locus:2135555	129	AT4G12520 [Arabidopsis thalian	0.389	0.682	0.516	3.1e-19

TAIR|locus:2203876 AT1G62500 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/91 (61%), Positives = 72/91 (79%)

Query:   135 QQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAP 194
             +Q TCPINALKL ACVDVLGGLI IGLG+  +  CCP+L GL++L+AA+CLCT IR+K  
Sbjct:   208 KQPTCPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIRLKLL 267

Query:   195 NLINLLVPISLQVLVNDCGKYPPAGFQCPPI 225
             NL N+ +P++LQ L+  CG  PP+GF CPP+
Sbjct:   268 NL-NIFIPLALQALIT-CGINPPSGFVCPPL 296

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 57/87 (65%), Positives = 74/87 (85%)

Query:   137 KTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNL 196
             KTCPI+ LKL +CVD+LGGL+ IG+G SAKEKCCP++ GLVDLDAA+CLCT I+ K  N 
Sbjct:  1395 KTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIKAKLLN- 1453

Query:   197 INLLVPISLQVLVNDCGKYPPAGFQCP 223
             I++++PI+L+VL+N CGK PP GF+CP
Sbjct:  1454 IDVILPIALEVLLN-CGKNPPPGFKCP 1479

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:2090419 CWLP "cell wall-plasma membrane linker protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 57/88 (64%), Positives = 74/88 (84%)

Query:   137 KTCPINALKLSACVDVLGGLIQIGLGDS-AKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
             +TCPI+ LKL ACVDVLGGLI IGLG S AK +CCP+L GL+DLDAA+CLCT I++K  N
Sbjct:   248 ETCPIDTLKLGACVDVLGGLIHIGLGKSHAKAECCPVLGGLLDLDAAVCLCTTIKLKLLN 307

Query:   196 LINLLVPISLQVLVNDCGKYPPAGFQCP 223
              I+L++PI+L++L+ DCGK PP+ F+CP
Sbjct:   308 -IDLVLPIALELLL-DCGKTPPSDFKCP 333

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2041927 AT2G10940 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 53/85 (62%), Positives = 69/85 (81%)

Query:   138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLI 197
             TCPI+ LKL ACVD+LGGL++IGLGD A  KCCPLL GLV+++AA CLCT +++KA +L 
Sbjct:   207 TCPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDL- 265

Query:   198 NLLVPISLQVLVNDCGKYPPAGFQC 222
             NL VP++LQ+L+  CGK PP G+ C
Sbjct:   266 NLYVPVALQLLLT-CGKNPPPGYTC 289

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/85 (56%), Positives = 61/85 (71%)

Query:   138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLI 197
             +CPI+ALKL  C +VL  L+ I LG  + ++CC L+ GLVD+DAAICLCTA+R      I
Sbjct:    77 SCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLG-I 135

Query:   198 NLLVPISLQVLVNDCGKYPPAGFQC 222
             NL VPISL VL+N C +  P+GFQC
Sbjct:   136 NLNVPISLSVLLNVCNRKLPSGFQC 160

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135610 EARLI1 "EARLY ARABIDOPSIS ALUMINUM INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/84 (57%), Positives = 59/84 (70%)

Query:   139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLIN 198
             CPI+AL+L  C +VL  L+ I LG  + + CC L+ GLVDLDAAICLCTA+R      IN
Sbjct:    85 CPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLG-IN 143

Query:   199 LLVPISLQVLVNDCGKYPPAGFQC 222
             L VPISL VL+N C +  P+GFQC
Sbjct:   144 LNVPISLSVLLNVCNRKVPSGFQC 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135635 AT4G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 47/84 (55%), Positives = 59/84 (70%)

Query:   139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLIN 198
             CPI+AL+L  C +VL GL+ + LG  + + CC L+ GLVDLDAAICLCTA+R      IN
Sbjct:    94 CPIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLG-IN 152

Query:   199 LLVPISLQVLVNDCGKYPPAGFQC 222
             L VPISL VL+N C +  P+ FQC
Sbjct:   153 LNVPISLSVLLNVCNRRLPSDFQC 176

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135625 AT4G12490 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 46/84 (54%), Positives = 59/84 (70%)

Query:   139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLIN 198
             CPI+AL+L  C +VL GL+ + LG  + + CC L+ GLVDLDAA+CLCTA+R      IN
Sbjct:    99 CPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLG-IN 157

Query:   199 LLVPISLQVLVNDCGKYPPAGFQC 222
             L VPISL VL+N C +  P+ FQC
Sbjct:   158 LNVPISLSVLLNVCNRRLPSNFQC 181

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2135545 AT4G12510 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/89 (51%), Positives = 60/89 (67%)

Query:   134 KQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKA 193
             K   +CP + LKL  C +VL  L++I LG    + CC LL+GLVDL+AA CLCTA++ K 
Sbjct:    41 KSTGSCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKV 100

Query:   194 PNLINLLVPISLQVLVNDCGKYPPAGFQC 222
                INL VP+SL +L+N CGK  P+GF C
Sbjct:   101 LG-INLNVPVSLSLLLNVCGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135555 AT4G12520 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/89 (51%), Positives = 60/89 (67%)

Query:   134 KQQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKA 193
             K   +CP + LKL  C +VL  L++I LG    + CC LL+GLVDL+AA CLCTA++ K 
Sbjct:    41 KSTGSCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKV 100

Query:   194 PNLINLLVPISLQVLVNDCGKYPPAGFQC 222
                INL VP+SL +L+N CGK  P+GF C
Sbjct:   101 LG-INLNVPVSLSLLLNVCGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	6e-27
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-10
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-08
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-07
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-07
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	7e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	4e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	3e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-05
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	6e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	8e-05
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	9e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	9e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	1e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	1e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	1e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	2e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-04
PLN02769	629	PLN02769, PLN02769, Probable galacturonosyltransfe	4e-04
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	5e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	6e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	6e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-04
COG3115	324	COG3115, ZipA, Cell division protein [Cell divisio	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	7e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	7e-04
PRK09424	509	PRK09424, pntA, NAD(P) transhydrogenase subunit al	7e-04
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	7e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	7e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-04
TIGR02784	1135	TIGR02784, addA_alphas, double-strand break repair	8e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	9e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.001
PRK00095	617	PRK00095, mutL, DNA mismatch repair protein; Revie	0.001
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	0.002
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	0.002
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	0.002
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.002
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.003
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.003
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.003
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.003
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	0.003
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.003
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.003
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.004
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.004
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.004
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.004
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.004
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.004

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score = 98.6 bits (246), Expect = 6e-27
 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query: 138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLI 197
           TCP +ALKL  C +VLG  + + LG  A + CCPL+ GL DLDAA+CLCTAI+      I
Sbjct: 3   TCPRDALKLGVCANVLGLSL-LLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-I 60

Query: 198 NLLVPISLQVLVNDCGKYPPAGFQC 222
           ++ +P++L +L+N CG+  P GF C
Sbjct: 61  SINIPVALSLLLNSCGRNVPPGFTC 85

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 15/83 (18%), Positives = 19/83 (22%), Gaps = 3/83 (3%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
            T  P ++        S     P       P P PPA    P    K          P  
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA-AAAPAAPPKPAAAAAAAAAPAA 98

Query: 90  PKVKPSTPPPPVVKPPPPPKEKP 112
           P    +   P         +  P
Sbjct: 99  PPAAAAAAAPA--AAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 11/76 (14%), Positives = 13/76 (17%)

Query: 42  PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPV 101
           P   +               P        P       P       PP P    +    P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 102 VKPPPPPKEKPTPPPV 117
             P       P    V
Sbjct: 98  APPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 19/113 (16%), Positives = 25/113 (22%), Gaps = 9/113 (7%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVK-PTPPPPAVK------PPPPPKVKTTPPPPV 83
             P        P   +P+  P  +      P   P A        P   P      P   
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA 432

Query: 84  VKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
                P     +    P   PP     +    PV  +P        P P    
Sbjct: 433 APAAAPAAAPAAVALAPA--PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 12/79 (15%), Positives = 16/79 (20%), Gaps = 2/79 (2%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPK 91
           P   ++P       + +   P   P  K    P    P         PP P         
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA--PAAPPKPAAAAAAAAA 95

Query: 92  VKPSTPPPPVVKPPPPPKE 110
                       P     E
Sbjct: 96  PAAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 28/107 (26%), Positives = 34/107 (31%), Gaps = 12/107 (11%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
            P P   P  P         P P  P   P+  P A      P      P      PPP 
Sbjct: 361 VPVPAPQPAKPTAA-----APSPVRPTPAPSTRPKAAAAANIP---PKEPVRETATPPPV 412

Query: 91  KVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQK 137
             +P  PP P      P   +   P   K   TPP     PP +++K
Sbjct: 413 PPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPP----APPKEEEK 455

Length = 585

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 23/125 (18%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 16  SGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPK--VKPTPPPPAVKPPPPP 73
           + A  ++   +   P  P  ++P   P   + +   P   P         PPA  PP P 
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV 426

Query: 74  KVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
                  P    P   P   P+        P     E    P  V   P   +    P  
Sbjct: 427 -----AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481

Query: 134 KQQKT 138
                
Sbjct: 482 APAAA 486

Length = 618

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
           +   P  + P   P P S +    P P +      P A  P    +   TPP   V PP 
Sbjct: 377 QHIKPVFTQPAAAPQP-SAAAAASPSPSQSSAAAQPSA--PQSATQPAGTPPTVSVDPPA 433

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
              V P +  P  V+P    +EK    PV K     P+   P   K +
Sbjct: 434 AVPVNPPSTAPQAVRPAQFKEEK--KIPVSKVSSLGPSTLRPIQEKAE 479

Length = 614

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 14/78 (17%), Positives = 16/78 (20%), Gaps = 1/78 (1%)

Query: 50  KPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPK 109
            P              A    P        P     P PP    P+ PP P         
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPA-PAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 110 EKPTPPPVVKSPPTPPNV 127
               P     + P    V
Sbjct: 96  PAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P      +   P  P S SP  P  P   +    P     PP P    +  PP     P 
Sbjct: 173 PGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPT 232

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
               PS PP P   PPPP ++ P       + PTPP+    P P    T
Sbjct: 233 N---PSPPPGPAAPPPPPVQQVPPLS---TAKPTPPSASATPAPIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 28   SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
            S+     P++P  PP      P    R  +    PP    +PP P      PPPP  +P 
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARP-AVSRSTESFALPPDQPERPPQPQ----APPPPQPQPQ 2922

Query: 88   PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
            PPP  +P  PPPP  +P PP      P    +     P   
Sbjct: 2923 PPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 35/125 (28%), Positives = 44/125 (35%), Gaps = 13/125 (10%)

Query: 30   PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPP-------------PPAVKPPPPPKVK 76
            P    P+ P  PP    P+  PPP  P     P              PP+  P   P   
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAP 2878

Query: 77   TTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
              PP   +  P   +   S   PP     PP  + P PP     PP PP  + PPPP  +
Sbjct: 2879 ARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938

Query: 137  KTCPI 141
               P+
Sbjct: 2939 PQPPL 2943

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 12/71 (16%), Positives = 16/71 (22%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           +       +    P      +P P P        PP PA            P       P
Sbjct: 49  AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108

Query: 88  PPPKVKPSTPP 98
               V+    P
Sbjct: 109 AAAAVEDEVTP 119

Length = 1228

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           + P+ PP SSP  P  P  P     P    + P P       PP       P P     P
Sbjct: 182 ASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP-------PSPESPTNP 234

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
            PP    + PPPPV + PP    KPTPP    +P     + 
Sbjct: 235 SPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 14/102 (13%), Positives = 18/102 (17%)

Query: 34  PPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVK 93
           P ++     P    +P  P             A  P P          P   P   P   
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 94  PSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQ 135
            + P        P                  P     P    
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVA 467

Length = 618

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLIN 198
           C    LKL+ C   L G  Q        ++CC  L  L     A C CTAIR      I 
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQ-----VPSQQCCSQLRQL----QAQCRCTAIRAIV-LGIE 50

Query: 199 LLVPISLQVLVNDCGKYPPAGFQC 222
            + P +   L + CG   P G  C
Sbjct: 51  GINPQAAASLPSMCGVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 11/75 (14%), Positives = 14/75 (18%)

Query: 59  KPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVV 118
            P                 + P        P    P+ P       PP P          
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 119 KSPPTPPNVRYPPPP 133
            +PP       P   
Sbjct: 97  AAPPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPP-PPAVKPPPPPKVKTTPPPPVVKPPP 88
           P P  P++    P   +P+P   P+       PP  P  +   PP     PP PV  P P
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP---PVPPRPVAPPVP 422

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPP 116
                        +     PK  P  PP
Sbjct: 423 HTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 27/104 (25%), Positives = 28/104 (26%), Gaps = 4/104 (3%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P    PS+    P          P         P PA  P P P     P PP      P
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAA----AAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
               PS PP       P P     P P     P PP    P   
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 21/97 (21%), Positives = 28/97 (28%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P P ++        +P+  P P P       PP      P     + PP       P 
Sbjct: 408 AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPA 467

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPN 126
           P    +  P     P PP    P   P   + P  P 
Sbjct: 468 PAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 45  HSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKP 104
              +      PP  + +PPPPA  PP P    T PPP    PPPPP    ++   P   P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP--PPPPPTATQASSNAPAQIP 571

Query: 105 PPPPKEKPTPPPVVKSPPTPPN 126
                  P P     SP    +
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 18/96 (18%), Positives = 23/96 (23%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                  +P   P   + +P  PP      P   P A  P   P            PP  
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
              +    P  V   P      P P     +    P
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 51  PPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKE 110
           P P P   KPT   P+   P P    T P        PP +    T  PP V  PP P  
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTP-APSTRPKAAAAANIPPKEPVRETATPPPV--PPRPVA 418

Query: 111 KPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
            P P    +S P       P   K + T P
Sbjct: 419 PPVPHT-PESAPKLTRAAIPVDEKPKYTPP 447

Length = 585

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 12/108 (11%), Positives = 24/108 (22%), Gaps = 1/108 (0%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             PP  ++P       +        P      PPP +     P          ++     
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQK 137
            +           +P    + +P    + +     P           K
Sbjct: 429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRP-APSALEKAPAK 475

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 37/106 (34%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 33   PPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKP----PPPPKVKTTPPPPVVKPPP 88
            PPP  P   PP       PPPRP    P P  PAV      P  P     P  PV     
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRP---APRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD 2607

Query: 89   PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPK 134
            P    P +P PP    P PP   P+P P    P   P    PPP +
Sbjct: 2608 PRGPAPPSPLPPDTHAPDPP--PPSPSPAANEPDPHPPPTVPPPER 2651

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 11/77 (14%), Positives = 17/77 (22%), Gaps = 2/77 (2%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           +       ++ + P    +      P P    P    PA  P P         P      
Sbjct: 45  TAAAAAAAAAASAPAAAPAAKAPAAPAPA--PPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102

Query: 88  PPPKVKPSTPPPPVVKP 104
                  +      V P
Sbjct: 103 AAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 29/104 (27%), Positives = 33/104 (31%), Gaps = 1/104 (0%)

Query: 31   TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
             P PP+ P  P  P  P+    P      P P PPA     PP+  T P    +      
Sbjct: 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797

Query: 91   KVKPSTP-PPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
               P  P  PP     P     P   P    PP        PPP
Sbjct: 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 20/104 (19%), Positives = 26/104 (25%), Gaps = 6/104 (5%)

Query: 42  PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPV 101
           P   + +  P  +    +P    PA  P         P         P     +   PP 
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA------PAAAASAPAAPPA 419

Query: 102 VKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALK 145
             PP P        P       P  V   P P  Q      A+ 
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463

Length = 618

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 22/84 (26%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
              +    +    PPPP    P P P PP  +PT   P   PPPPP   T          
Sbjct: 513 QSGSASNTAKT--PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEK 111
           P     P   P      P      
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 32/133 (24%), Positives = 39/133 (29%), Gaps = 16/133 (12%)

Query: 30  PTPPPP------SSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPP--PPKVKTTPPP 81
           P P PP       +        +  P     P    P+ PP +    P  P   +    P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 82  PVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYP------PPPKQ 135
                PP P    S  PPP  + P  P   P P P    PP    V         PP   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPS--PPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 136 QKTCPINALKLSA 148
               PI  + L  
Sbjct: 266 ATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 22/130 (16%)

Query: 28   SKPTPPPPSS-PNCPPPPHSPSP-----------------KPPPRPPKVKPT----PPPP 65
            + P PPP S+ P  PPPP  P P                 +PP R P  KP     PP  
Sbjct: 2825 AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVR 2884

Query: 66   AVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
             +  P   +   +   P  +P  PP+ +   PP P  +PPPPP+ +P PPP  +  P   
Sbjct: 2885 RLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

Query: 126  NVRYPPPPKQ 135
                P    +
Sbjct: 2945 PTTDPAGAGE 2954

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 14/71 (19%), Positives = 16/71 (22%)

Query: 70  PPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRY 129
           P      T            P   P+   P    P PP    P  PP   +         
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 130 PPPPKQQKTCP 140
            PP       P
Sbjct: 98  APPAAAAAAAP 108

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 28  SKPTPPPPSSPNCPP---PPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVV 84
                P P  P   P   P  + +   PP+ P  +   PPP    PP P     P  P  
Sbjct: 371 PTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPES 427

Query: 85  KPPPPPKVKPSTPPPPVVKPPPPPKE 110
            P       P     P   PP PPKE
Sbjct: 428 APKLTRAAIPV-DEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 34/121 (28%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 32   PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPP--AVKPPPPPKVKTTPPPPVVKPPPP 89
            PPPP +P   P     +   PP P   +   P    A  PP  P    TP  P     PP
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP 2761

Query: 90   PKVKPSTPPPPVVKPPPPPKEKPTPP--PVVKSPPTPPNVRYPPPPKQQKTCPINALKLS 147
                P  P PP      PP+    P    + +S  + P+   P  P      P  AL  +
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

Query: 148  A 148
            A
Sbjct: 2822 A 2822

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 28/114 (24%), Positives = 36/114 (31%), Gaps = 2/114 (1%)

Query: 33   PPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKV--KTTPPPPVVKPPPPP 90
               + P          P PPP  P+  P     A   PP P    + +P  P    PP  
Sbjct: 2685 RRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV 2744

Query: 91   KVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINAL 144
               P+TP  P     PP    P  P    +P   P  R   P     +    +L
Sbjct: 2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 29/82 (35%)

Query: 47  PSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPP 106
           PS           P  P PA  P PPP       P   +    P   P+   PP+  P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 107 PPKEKPTPPPVVKSPPTPPNVR 128
           P +  PTPP    + P   N+ 
Sbjct: 421 PTEPSPTPPANAANAPPSLNLE 442

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 15/95 (15%), Positives = 19/95 (20%), Gaps = 4/95 (4%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
               P   +S    PP  +P               P  A               P     
Sbjct: 403 PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAI 462

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPP 122
           P        P P V    P P   P    +  +  
Sbjct: 463 P----VRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 31   TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPP----PPKVKTTPPPPVVKP 86
             P  P  P  P  P + +  P P PP      PP  +  P         ++ P P     
Sbjct: 2747 GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

Query: 87   PPPPKVKPSTPPPPVVKP----PPPPKEKPTPPPVVKSPPTPP 125
            PP   + P+   PP   P    PPP   +PT PP    PP P 
Sbjct: 2807 PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 19/83 (22%), Positives = 23/83 (27%)

Query: 18  ALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKT 77
            LL  L            +  N  P P+   P  P +P   K         PPP      
Sbjct: 355 TLLGLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPP 414

Query: 78  TPPPPVVKPPPPPKVKPSTPPPP 100
            P P     P P     +   PP
Sbjct: 415 IPVPAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 22/125 (17%), Positives = 33/125 (26%), Gaps = 13/125 (10%)

Query: 26  DCSKPTPPPPSSPNCPPPPHSPSPKPPP------------RPPKVKPTPPPPAVKPPPPP 73
             +    PP +    PPP  +P   P              R    +      A K  P  
Sbjct: 386 APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAA 445

Query: 74  KVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
             +  P    ++     +  PS       K      +   P  V K P   P        
Sbjct: 446 ASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA-LKKAL 504

Query: 134 KQQKT 138
           + +KT
Sbjct: 505 EHEKT 509

Length = 647

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 15/108 (13%), Positives = 26/108 (24%), Gaps = 1/108 (0%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPP-VVKPPPP 89
            PP  ++P    PP + +P    RP      P P  V+       +          P  P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQK 137
               P+ P           +         +               + +
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 20/106 (18%), Positives = 28/106 (26%), Gaps = 3/106 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP- 88
              P P++P   P   +P+     R     P    PA +     +  +   P     P  
Sbjct: 394 AAAPAPAAPPAAPAA-APAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452

Query: 89  -PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
            P     +   P    P P        P        P      PPP
Sbjct: 453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498

Length = 700

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 30/85 (35%), Positives = 34/85 (40%)

Query: 42  PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPV 101
               +  P+P P PP+ +P PP     PP P   K    P   K P  PK KP   P P 
Sbjct: 49  LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108

Query: 102 VKPPPPPKEKPTPPPVVKSPPTPPN 126
            K  P PK K  P       P  PN
Sbjct: 109 PKVKPQPKPKKPPSKTAAKAPAAPN 133

Length = 244

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 40/132 (30%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 28   SKPTPPPPSSPNCP--------------PPPHSPSPKP--PPRPPK---VKPTPPPPAVK 68
            + P PP P  P+ P              PP  SP+ KP  P RPP     +P        
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES 2897

Query: 69   PPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
               PP     PP P   PPP P+ +P  PP P   PPPPP+ +P   P            
Sbjct: 2898 FALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957

Query: 129  YPPPPKQQKTCP 140
              P P      P
Sbjct: 2958 AVPQPWLGALVP 2969

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 19/75 (25%), Positives = 21/75 (28%)

Query: 40  CPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPP 99
                 + S    P P      PP P     P  K   T P P      PP   P+ P  
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 100 PVVKPPPPPKEKPTP 114
           P   PP      P  
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 15/119 (12%), Positives = 25/119 (21%), Gaps = 8/119 (6%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPP-PKVKTTPPPPVVKP 86
           +       + P  P  P  P+  P   P    P      +       + +        +P
Sbjct: 384 TAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

Query: 87  PPPPKVKPSTPP-------PPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
               + +P            P          K        + P          PK  K 
Sbjct: 444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKK 502

Length = 647

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 25/84 (29%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 46  SPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVV-KPPPPPKVKPSTPPPPVVKP 104
                PP   P            P  P     TP PP   KP PP   KP         P
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKP---------P 169

Query: 105 PPPPKEKPTPPPVVKSPPTPPNVR 128
            P P  KP P PV ++ P    V 
Sbjct: 170 EPAPAAKPPPTPVARADPRETRVP 193

Length = 418

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 28  SKPTPPPPSSPNCP-PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKV-KTTPPPPVVK 85
           ++P  P    P    PP H+P P  P   P  +P   P   +P   P   +  P P  V 
Sbjct: 99  AQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVH 158

Query: 86  PPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPP 122
             P P  +   P  PV  P P P  +  P PV+  P 
Sbjct: 159 SAPQPAQQAFQPAEPVAAPQPEPVAE--PAPVMDKPK 193

Length = 333

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 19/111 (17%), Positives = 27/111 (24%), Gaps = 5/111 (4%)

Query: 32  PPPPSSPNCPPPPHSPSPK---PPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
               ++P   P P + +P    P P  P   P   P A               P  +   
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALA 434

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTP--PPVVKSPPTPPNVRYPPPPKQQK 137
             +   +  P     P P P   P     P    P          P +   
Sbjct: 435 AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 23/119 (19%)

Query: 28   SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
                P PPS    PP  H+P P PP   P      P P    PPP + +  P P  V  P
Sbjct: 2607 DPRGPAPPSPL--PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664

Query: 88   --------------PPPKVKPSTPPPPVVK-------PPPPPKEKPTPPPVVKSPPTPP 125
                          PP + +     P V         PPPPP  +P P  +V + P PP
Sbjct: 2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPP 2723

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 28   SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
            S+ T      P+ P  P  P   PPP+P    P PP P   PPPPP     P  P   P 
Sbjct: 2892 SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ-PPPPPPPRPQPPLAPTTDPA 2950

Query: 88   PPPKVKPSTPPPPVVKPPPPPKE-------KPTPPPVVKSPPTPPNVRYPPP 132
               +   + P P +    P           +P P     +  TPP   +   
Sbjct: 2951 GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLS 3002

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 31/125 (24%), Positives = 37/125 (29%), Gaps = 4/125 (3%)

Query: 28   SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
                    SSP   P   +  P          P PPPP  +P P   V  TP PP     
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

Query: 88   ----PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINA 143
                P     P+ P  P     P    +P  PP    PP P     P     ++      
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

Query: 144  LKLSA 148
              LS 
Sbjct: 2789 ASLSE 2793

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 24/87 (27%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 36  SSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPS 95
           S          P P+  P PP      PP        P     PPPP             
Sbjct: 514 SGSASNTAKTPPPPQKSPPPP---APTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570

Query: 96  TPPPPVVKPPPPPKEKPTPPPVVKSPP 122
                   PPPP  E+PTP P   S P
Sbjct: 571 PADSS---PPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 2/109 (1%)

Query: 17  GALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVK 76
            AL    A         PP +          +P   P P  V+      A +     +  
Sbjct: 49  AALAPPAAAA--PAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAA 106

Query: 77  TTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
               P    P  P +   +      +        +P  P    +     
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 25/117 (21%), Positives = 29/117 (24%), Gaps = 3/117 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P P  +P   P   +      PRP        P    P   P      PPP  + PP 
Sbjct: 446 GAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPE 505

Query: 90  ---PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINA 143
              P        P        P      P        P     P P     T P+ A
Sbjct: 506 FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562

Length = 700

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 28/108 (25%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 30  PTPPPPSSPN--CPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           P PP    P    P     P   PP +PP     P     +  P   +    P      P
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLP--APSQAPAQP 230

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVV---KSPPTPPNVRYPPP 132
           P P   P  PPP      P   ++  PPP     +    P     PPP
Sbjct: 231 PLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPP 278

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 28/111 (25%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 30   PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
            P P PP++P   PP     P         +  P P     PP   +      P    P  
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

Query: 90   PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
            P   P++  P    PPP P     P     +P     VR  PP +     P
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD--VRRRPPSRSPAAKP 2875

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/104 (25%), Positives = 29/104 (27%), Gaps = 4/104 (3%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P    +P    P  + +P P   P       P PA  P PP      P      PPP 
Sbjct: 404 AAPAAAPAPAAAAPAAAAAPAPAAAP----QPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
                   P P   P P     P PP        P     P  P
Sbjct: 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 44  PHSPSPKPPPRPPKVKPTPPPPA----VKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPP 99
           P +P P+P   P    P     A         PP+    PPPP   P   P V       
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 100 PVVKPPPPPKEKPTPPPVVKSPPTPP 125
            ++      +         KS P   
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAA 446

Length = 647

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 19/76 (25%), Positives = 22/76 (28%)

Query: 66  AVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
              P   P            P  P    P+  PP   KP PP   KP  P     PP  P
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Query: 126 NVRYPPPPKQQKTCPI 141
             R  P   +     +
Sbjct: 182 VARADPRETRVPMSRM 197

Length = 418

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPK 91
             PP +   P  P    P+    PP+  P P  PA +P   P  +  P  P+ +P  P  
Sbjct: 92  YQPPYASAQPRQPVQQPPEAQ-VPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSP-- 148

Query: 92  VKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
                P P  V   P P ++   P    + P P  V  P P   +
Sbjct: 149 --QVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDK 191

Length = 333

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
             PP   P    P                P   P     PPP +    P      PPPPP
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ---QPPPLQQPQFPGLSQQMPPPPP 260

Query: 91  KVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
           +       PP  +  PPP+ +PTP P     P   N   PPP + Q
Sbjct: 261 QPPQQQQQPPQPQAQPPPQNQPTPHP---GLPQGQNAPLPPPQQPQ 303

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 46  SPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPP 105
             +  P   P  V P   P   +P P   V+   P PV KP P PK +     PP  KP 
Sbjct: 78  GDAAAPSLDPATVAPPNTPVEPEPAP---VEPPKPKPVEKPKPKPKPQQKVEAPPAPKPE 134

Query: 106 PPPKEKPTPPPV 117
           P P  +    P 
Sbjct: 135 PKPVVEEKAAPT 146

Length = 226

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 23/102 (22%), Positives = 27/102 (26%), Gaps = 2/102 (1%)

Query: 34  PPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKV--KTTPPPPVVKPPPPPK 91
             +     P   +PS           P    PA    P P    +  P P     PP P 
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 92  VKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
                   P   P   P  +P P P     PT      PP  
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAA 487

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 19/114 (16%), Positives = 25/114 (21%), Gaps = 4/114 (3%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKP----PPPPKVKTTPPPPVVKP 86
             P  ++P    P  +  P  P   P         A  P    P P  +          P
Sbjct: 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444

Query: 87  PPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
              P   P+    P     P             + P        P P      P
Sbjct: 445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498

Length = 700

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 29/125 (23%), Positives = 35/125 (28%), Gaps = 18/125 (14%)

Query: 28  SKPTPPPPSSPNCP---------PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTT 78
               P                  PP  S  P+ P + P     PP  A +P  P      
Sbjct: 71  VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQ 130

Query: 79  PP---PPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP--PVVKSPPTP----PNVRY 129
            P   P   +P   P      P P  V   P P ++   P  PV    P P      V  
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMD 190

Query: 130 PPPPK 134
            P  K
Sbjct: 191 KPKRK 195

Length = 333

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 60  PTPPPPAVKPP---PPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPP 116
                P++ P    PP       P PV  P P P  KP   P P  K   PP  KP P P
Sbjct: 78  GDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKP 137

Query: 117 VVKSPPTP 124
           VV+    P
Sbjct: 138 VVEEKAAP 145

Length = 226

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 19/76 (25%), Positives = 24/76 (31%)

Query: 56  PKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP 115
             +       A   P P    + PP P+    P  K   +TP PP  K  PP      P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 116 PVVKSPPTPPNVRYPP 131
               +PP       P 
Sbjct: 423 EPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 25/105 (23%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 34  PPSSPNCPP--PPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPK 91
           P      P   P H+  P    R   V+PT    A++ P  P+    P      PPPP  
Sbjct: 657 PGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPP-- 714

Query: 92  VKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
                  P    P P         P     P PP        + Q
Sbjct: 715 -----DLPAAAGPAPCGSSLI-ASPTAPPEPEPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 30/130 (23%), Positives = 40/130 (30%), Gaps = 17/130 (13%)

Query: 28   SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPT---PPPPAVKPPPPPKVKTTPPPPVV 84
            S+     PS  +   PP +        PP   P    PPP + +P  PP     PPP + 
Sbjct: 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851

Query: 85   --------------KPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYP 130
                           P   P  KP+ P  P V+    P    +       P  P     P
Sbjct: 2852 LGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP 2911

Query: 131  PPPKQQKTCP 140
              P   +  P
Sbjct: 2912 QAPPPPQPQP 2921

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 46  SPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPP 105
           + +    P PP+  P PP P    PP P+   T PPP   PPPP   + S+  P  +   
Sbjct: 517 ASNTAKTPPPPQKSPPPPAP---TPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 106 PPPKEKPTPPPVVKSPPTPPN 126
             P       P          
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 24/115 (20%), Positives = 31/115 (26%), Gaps = 9/115 (7%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPR-----PPKVKPTPPPPAVKPPPPPKVKTTPPPP 82
             P P P ++P     P +  P+P        P +  P   P      PPP  +  P   
Sbjct: 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA 507

Query: 83  VVKP----PPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
              P      P      + P P    P    E   P P     P       P   
Sbjct: 508 SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 19/85 (22%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           S         P    PP      P P+P      PPP     PPPP           + P
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTA--TAPPPTPP--PPPPTATQASSNAPAQIP 571

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKP 112
                 P  P  P   P      + 
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 25/104 (24%), Positives = 29/104 (27%), Gaps = 1/104 (0%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P    P+ P  P P  +P       P    P     A  P P        PP    PP P
Sbjct: 693 PAGAAPAQPA-PAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
                  PPPP   P   P   P P P  +      +       
Sbjct: 752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 22/107 (20%), Positives = 30/107 (28%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P  PPP+     P   + +    P P      P   A  P   P                
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
           P   P  P  P      P +  P P P   + P       PP  +++
Sbjct: 738 PVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 22/77 (28%)

Query: 33  PPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKV 92
              S       P +P+P P P PP     P  P  K                 P P    
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 93  KPSTPPPPVVKPPPPPK 109
           +PS  PP      PP  
Sbjct: 423 EPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/77 (32%), Positives = 28/77 (36%)

Query: 56  PKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP 115
                TPPPP   PPPP      P P    PPP P   P T        P       +PP
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 116 PVVKSPPTPPNVRYPPP 132
           P +   PTP   +   P
Sbjct: 578 PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 11  IVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPP 70
            + L S +  +S       P    P  P   PP     P+P    P   P PPPP     
Sbjct: 507 KLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPL----PQPTATAPPPTPPPPPPTATQA 562

Query: 71  PPPKVKTTPPPPVVKPPPPPKVKPSTPPPP 100
                   P      PP P +  PS     
Sbjct: 563 SSNAPAQIPADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKP--PPPPKVKTTPPPPVVK 85
             P P  P+      P + P P+ P + P      P P      P P +    P  PV  
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA 176

Query: 86  PPPPPKVKPSTPPPPVVKPPPPPKE 110
           P P P        P  V   P  KE
Sbjct: 177 PQPEPVA-----EPAPVMDKPKRKE 196

Length = 333

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 65  PAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPP-PPVVKPPPPPKEKPTP-PPVVKSPP 122
           P+    P  K K   P        P   KP  P   P   P P     P   PPV +S P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441

Query: 123 TPPNVRYPPPPKQQKTCP 140
            PP+ +   P       P
Sbjct: 442 LPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 20/81 (24%), Gaps = 8/81 (9%)

Query: 58  VKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP--PPKVKPSTPPPPV-VKPPPPPKEKPTP 114
           + P P P   KP         P P    P P   PK   +   PP              P
Sbjct: 360 LVPVPAPQPAKPTAA-----APSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP 414

Query: 115 PPVVKSPPTPPNVRYPPPPKQ 135
            PV    P  P          
Sbjct: 415 RPVAPPVPHTPESAPKLTRAA 435

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/111 (20%), Positives = 26/111 (23%), Gaps = 6/111 (5%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTP----PPPAVKPPPPPKVKTTPPPPVVK 85
             P  P++P  P  P        P      P P    P    K    P           K
Sbjct: 613 ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAK 672

Query: 86  PPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
                   P   P P    P  P       P      TPP  +   P  Q 
Sbjct: 673 AGGAAPAAPPPAPAPA--APAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 22/88 (25%), Positives = 22/88 (25%), Gaps = 3/88 (3%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P P     P   P P    P P    P      PPPA  P   P       P     P P
Sbjct: 423 PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP 482

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPV 117
               P   P P   P  P          
Sbjct: 483 A---PPAAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 23/132 (17%), Positives = 29/132 (21%), Gaps = 28/132 (21%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPR--------------------PPKVKPTP---PPPA 66
           P   P ++        +P+ + P                       P     P     PA
Sbjct: 406 PAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPA 465

Query: 67  VKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPP-----PPVVKPPPPPKEKPTPPPVVKSP 121
              P P        P    P   P      PP     PP    P P +    P   V   
Sbjct: 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAES 525

Query: 122 PTPPNVRYPPPP 133
              P    P   
Sbjct: 526 IPDPATADPDDA 537

Length = 700

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 26/79 (32%)

Query: 56  PKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP 115
                  P    +P P P  +   PP   + PP P        P   K P  PK KP P 
Sbjct: 45  AAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPK 104

Query: 116 PVVKSPPTPPNVRYPPPPK 134
           P  K    P      PP K
Sbjct: 105 PKPKPKVKPQPKPKKPPSK 123

Length = 244

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPP--PPVVKPP 87
           P   P      P P     P+P   P   KP  P       P P    TP   PPV +  
Sbjct: 384 PAGSPDVKKKAPEP---DLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 88  PPPKVKPSTPPPPVVKPPP 106
           P P    ++ P  V    P
Sbjct: 441 PLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 43  PPHSPSPKPPPRPPKV-------------KPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           PP+ P   P P  PK              KPT  P    P   P V+     P  +P   
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 90  PKVKPSTPPPPVVKPPPPPKEK 111
           P      P P      PP  E+
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 17/100 (17%), Positives = 27/100 (27%)

Query: 54  RPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPT 113
            P    P P  P     P    + T  P     PP     P  P     + P  P  + T
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 114 PPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLSACVDVL 153
              +                K +      A  +++ ++ L
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERL 459

Length = 647

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/110 (20%), Positives = 30/110 (27%), Gaps = 4/110 (3%)

Query: 35  PSSPNCPPPPHSPSPKPPP----RPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
             +          + +P P    +PP     P  P  +PP         P P    P P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 91  KVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
           +     P P      P   +    P  V S P P    + P        P
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQP 179

Length = 333

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 25/107 (23%), Positives = 34/107 (31%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
               P  S     PP  P     P P +    P      PPPPP+       P      P
Sbjct: 217 QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP 276

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
           P     TP P + +    P   P  P ++     P   +  P  ++Q
Sbjct: 277 PPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQ 323

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 29/116 (25%), Positives = 37/116 (31%), Gaps = 5/116 (4%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRP-PKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
           P    P          +PS  P   P P   P  PPP  +P  P   +  PPPP   P  
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQ 265

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKP----TPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
             +       PP    P P    P     P P  + P   P V+ P   ++     
Sbjct: 266 QQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 32  PPPPSSPNCPPPPH----SPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
                +P  P PP        P      P+  P   PP    PP    +   P      P
Sbjct: 164 QQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQF--LP 221

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPI 141
            P +     P PP +   PPP ++P  P + +  P PP    P PP+QQ+  P 
Sbjct: 222 APSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPP----PQPPQQQQQPPQ 271

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 52  PPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEK 111
           PP PP+  P P  P              P    KP   P V+     P V  P   P+++
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAP----KPTQQPTVQNPAQQPTVQNPAQQPQQQ 228

Query: 112 PTPPPVVKSP-PTPPNVRYPPPPKQQ 136
           P   PV  +  PTP N    PP  +Q
Sbjct: 229 PQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 37  SPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPST 96
                P P  PSP   P PP    T  P      P         P   KP    K KP++
Sbjct: 12  GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPAS 71

Query: 97  PPPP---VVKP 104
                  VV+P
Sbjct: 72  LWKLEDFVVEP 82

Length = 475

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 30  PTPPPPSSPNCPPPPHSPS-PKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
            +P P  S     P    S  +P   PP V   PP      PP    +   P    +   
Sbjct: 398 ASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKK 457

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
            P  K S+  P  ++P     E+ T    +K  PT  
Sbjct: 458 IPVSKVSSLGPSTLRPIQEKAEQAT--GNIKEAPTGT 492

Length = 614

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 60  PTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVK 119
           P+     +     P   T  P P   P P     P T        PPP K  P  P   +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 120 SPPTPPNVRYPPPPKQQKTCPIN 142
                P    PP         +N
Sbjct: 421 PTEPSPT---PPANAANAPPSLN 440

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 23/102 (22%), Positives = 28/102 (27%), Gaps = 3/102 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
              P  ++P   P P    P P    P    +P P      P   V  + P P    P  
Sbjct: 477 AAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPP 131
                +  P      P P     T P V   PP       P 
Sbjct: 537 AFETLAPAPAA---APAPRAAAATEPVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 18/58 (31%), Positives = 21/58 (36%)

Query: 42  PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPP 99
           PP  +P+     +  K  P  P  A   P PP      PP   KPP P       P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAV-KPPPPPKVKTTPPPPVVKPP 87
                PP++              P +P    PTP PPA  KP PP   K   P P  KPP
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Query: 88  PPP 90
           P P
Sbjct: 179 PTP 181

Length = 418

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 3/98 (3%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
              P PP  P    PP    P+ P    ++ P PP P  +   PP+ +  PPP     P 
Sbjct: 228 AQPPLPPQLPQ--QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPH 285

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPN 126
           P   +    P P  + P         P   +  P    
Sbjct: 286 PGLPQGQNAPLPPPQQPQLL-PLVQQPQGQQRGPQFRE 322

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPR-PPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
            P PPS+    P P +P+  PP   PP     P  PA   P P      P PP    PP 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA-----PAPPAAAAPPA 435

Query: 90  PKVKPSTPP 98
               P+   
Sbjct: 436 RSADPAAAA 444

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 18/99 (18%), Positives = 21/99 (21%)

Query: 38  PNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTP 97
                 P   +      P      PP  A +P  P        P        P    + P
Sbjct: 584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAP 643

Query: 98  PPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
            P V  P   PK    P         P       P    
Sbjct: 644 APGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPP 682

Length = 824

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 47  PSP-KPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPP 105
           PSP   P    K      P   + P P K +     P   P P     P   PP     P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441

Query: 106 PPPKEKPTPPPVVKS 120
            PP  + + P  V S
Sbjct: 442 LPPSPQASAPRNVAS 456

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 13/76 (17%)

Query: 41  PPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPP 100
           P PP +    P P  P      PPPA  PP PP       P   +P P        P PP
Sbjct: 382 PAPPSAAWGAPTPAAP----AAPPPAAAPPVPPA--APARPAAARPAPA-------PAPP 428

Query: 101 VVKPPPPPKEKPTPPP 116
               PP     P    
Sbjct: 429 AAAAPPARSADPAAAA 444

Length = 576

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 23/110 (20%), Positives = 28/110 (25%), Gaps = 4/110 (3%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
                PPP +P    PP SP+P        V    PPPA  PP                 
Sbjct: 111 PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170

Query: 88  PP----PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
                    + +   P      PPP   P          + P       P
Sbjct: 171 QAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSP 220

Length = 1352

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 20/103 (19%), Positives = 24/103 (23%), Gaps = 13/103 (12%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
                  P     P    P   P+P          A   P P +      P      P  
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAA-------AAASPSPSQSSAAAQPSA----PQS 416

Query: 91  KVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
             +P+  PP V   PP     P  PP        P        
Sbjct: 417 ATQPAGTPPTVSVDPPAA--VPVNPPSTAPQAVRPAQFKEEKK 457

Length = 614

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 25/120 (20%), Positives = 31/120 (25%), Gaps = 1/120 (0%)

Query: 15  NSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPK 74
             G    + A +         S+     P    SP PP       P P PP   PPP P 
Sbjct: 72  PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPA 131

Query: 75  VKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPK 134
              +     V  P PP    S P               +    +         R P  P 
Sbjct: 132 PDLSEMLRPVGSPGPPP-AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP 190

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 27/112 (24%), Positives = 32/112 (28%), Gaps = 2/112 (1%)

Query: 24  ACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPV 83
           ACD  +P   PP  P    P +     P      + P  P     P PP      PPPP 
Sbjct: 61  ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPT 120

Query: 84  VKP--PPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
             P  PPP      +     V  P PP     P           +       
Sbjct: 121 PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA 172

Length = 1352

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 7/122 (5%)

Query: 8   SFLIVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPP---KVKPTPPP 64
           + L++L  S   +  L    S   PP            SPS       P   +++P    
Sbjct: 129 TLLLMLYGS---IMELRNAWSSLGPPLQHR-KRDAVTASPSSMIARNTPISDRLRPRSVT 184

Query: 65  PAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTP 124
           P     P    ++   P  ++ P   +V    PPP             +    + S    
Sbjct: 185 PTRGRRPSSSPRSLSNPTTLESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLAT 244

Query: 125 PN 126
           P 
Sbjct: 245 PR 246

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKP-PPPPKVKTTPPPPVVKP 86
               PP PSS     PP SP     P PP     PPPP V+  PP    K TPP     P
Sbjct: 209 DSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATP 268

Query: 87  PPPPKVKPS 95
            P   +   
Sbjct: 269 APIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 21/110 (19%), Positives = 29/110 (26%), Gaps = 5/110 (4%)

Query: 30  PTPPPPSSPNCPPPPHSP---SPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKP 86
              PP  + +      S     P+PP  P +    P         PP     PP      
Sbjct: 53  DLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGA 112

Query: 87  PPPPKVKPSTPPPPVVKPPPPPKEKPT--PPPVVKSPPTPPNVRYPPPPK 134
             P     ST P  + +   P    P        +          PPP +
Sbjct: 113 SSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSE 162

Length = 580

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 29/106 (27%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 32   PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTP----PPPVVKPP 87
            PP  + P  P         P P      P+P PP    P PP    +P    P P   P 
Sbjct: 2592 PPQSARPRAPVDDRGDPRGPAP------PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645

Query: 88   PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
             PP  +P   P P     P    +        SPP  P  R   P 
Sbjct: 2646 VPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT 2691

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
            PTPP PSSP+ PPPP  P   PPP P         P   P PPP    +PP     P  
Sbjct: 105 SPTPPGPSSPD-PPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPP--AASPPAAGASPAA 161

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
                 S+    +    P    +    P  + PP+ P     P P
Sbjct: 162 VASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206

Length = 1352

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 41  PPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPP 100
           PPPP S    PP            P  + P        P P   +P  PP   P+ P PP
Sbjct: 188 PPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPP 247

Query: 101 VVKPPPPPKEKPTPPP 116
           V++   PP   P PPP
Sbjct: 248 VIQYVAPP---PVPPP 260

Length = 582

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 25/97 (25%), Positives = 28/97 (28%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P P   P    P     P+ PP P   KP   P   K P  PK K  P P       P
Sbjct: 54  EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPN 126
                  P     K P  P +   PP    +      
Sbjct: 114 QPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATG 150

Length = 244

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 42.8 bits (100), Expect = 9e-05
 Identities = 36/124 (29%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 28  SKPTPPPPSSPNCPPPPHSP-SPKPPPRPPKVKPTPPPPAVKPPPPPKVK---------- 76
           S   P  P SP  PPPP  P SP+ P  P  +K   PP + KPP  PK K          
Sbjct: 623 SPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDA 682

Query: 77  --------TTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
                   TT            +  P TP  P   P P P + P        P   P+  
Sbjct: 683 AAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAE 742

Query: 129 YPPP 132
            P  
Sbjct: 743 QPDD 746

Length = 943

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 32/122 (26%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPP------- 80
            KP P PP +P   P P +P+ K                    P P  +  P        
Sbjct: 130 PKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQA 189

Query: 81  --PPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
             P    P  PP      PP    +   P +  P P      PP PP +   PPP QQ  
Sbjct: 190 AFPQQGPPEQPPGYPQ--PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ 247

Query: 139 CP 140
            P
Sbjct: 248 FP 249

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 15/59 (25%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
              P +P    PP      PPP        P P        P     P PP  +     
Sbjct: 692 LRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGA 750

Length = 753

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 33  PPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKV 92
           P P  P      H    +  P+P + +PT   PA +P      +     P  +P  P + 
Sbjct: 181 PAPGLPKTFTSSHGHRHRHAPKPTQ-QPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQ- 238

Query: 93  KPSTPPPPVVKPPPPPKEKPT 113
           +P+   P    P      K +
Sbjct: 239 QPTPQNPAQQPPQTEQGHKRS 259

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 50  KPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPK 109
           K     P   P  P  A  PPPP K       P  K   P    P    P   KP    K
Sbjct: 11  KGEAEQPAPAPPSPAAAPAPPPPAK----TAAPATKAAAPAAAAPRAEKPKKDKPRRERK 66

Query: 110 EKPTPP 115
            KP   
Sbjct: 67  PKPASL 72

Length = 475

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 84  VKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP--PVVKS 120
           V PP PP   P+  P P   P P P  +PTP   PV+ +
Sbjct: 918 VTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNA 956

Length = 1250

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 21/98 (21%), Positives = 25/98 (25%), Gaps = 1/98 (1%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKV-KPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
            P   +   P     P P+P      V     PP   +   P       P   +    P 
Sbjct: 116 APQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPA 175

Query: 91  KVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
              P T   P    PPPP        VV         R
Sbjct: 176 IDTPVTLELPPAPQPPPPVVPQPSTMVVHRRSRIKRTR 213

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 30 PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                SS +   PP S SP+P  R P        P     P PK+ +  PP V  PP  
Sbjct: 13 HASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTP--SILPLPKLSSPSPPSVTLPPAA 70

Query: 90 PKVKP 94
              P
Sbjct: 71 TTQTP 75

Length = 590

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 26/102 (25%), Gaps = 6/102 (5%)

Query: 41  PPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP--PKVKPSTPP 98
            P P  P  +                      P   +   PP   P  P  P        
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 99  PPVVKPPPPPKE----KPTPPPVVKSPPTPPNVRYPPPPKQQ 136
           P     PP P       P P P   + P+PP     PPP   
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV 248

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 67  VKPPPPPKVKTTPPPPVVKPPPPPKVKP-STPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
            +         TPPPP   PPPP    P   P      P PPP           +P   P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 126 NVRYPPPPKQQKTCPINALKLS 147
               PPPP  ++  P      S
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 61  TPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKS 120
           +         PPP  K+ PPP    P P P    +T PPP   PPPP   + +     + 
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQP---TATAPPPTPPPPPPTATQASSNAPAQI 570

Query: 121 PPTPPNVRYPPPPKQQKT 138
           P         P       
Sbjct: 571 PADSSPPPPIPEEPTPSP 588

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 30 PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P P SP   P P  P+    P      P    P  + P   K +    P   KP   
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP---KPASL 72

Query: 90 PKVK 93
           K++
Sbjct: 73 WKLE 76

Length = 475

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 28/96 (29%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 53  PRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP---PPPKVKPSTPPPPVVKPPPPPK 109
                    PPPP+  P  PP   +  P     P    P     P  P P   +P  PP 
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238

Query: 110 EKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALK 145
             P PP     PP    V  PP P  Q   PI  ++
Sbjct: 239 SIPAPP----IPPVIQYVAPPPVPPPQPIIPIQHIR 270

Length = 582

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 15/54 (27%)

Query: 48  SPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPV 101
           +P  P       P+       P P  +     P P    P P K        PV
Sbjct: 206 APAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 16/83 (19%), Positives = 18/83 (21%), Gaps = 8/83 (9%)

Query: 54  RPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVK---PSTPPPPVVKPPPPPKE 110
           +P        P   K P  P        P   P          P+  P      P  P  
Sbjct: 365 KPAAAAEAAAPAEKKTPARP----EAAAPAAAPVAQA-AAAPAPAAAPAAAASAPAAPPA 419

Query: 111 KPTPPPVVKSPPTPPNVRYPPPP 133
              P PV       P       P
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAP 442

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 23/104 (22%), Positives = 27/104 (25%), Gaps = 2/104 (1%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P P  +     P H   P                A   PPP      P  P    P  
Sbjct: 641 AAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
           P   P+  PP        P  +P       S P+P      P P
Sbjct: 701 PAPAPAATPPAG--QADDPAAQPPQAAQGASAPSPAADDPVPLP 742

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 59  KPTPPPPAVKPPPP-PKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPV 117
             +    A  PPPP        P P +  P      P+ PPPP              P  
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 118 VKSPPTPPNVRYPPPPKQQKTCPIN 142
              PP  P    P P K      I+
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEEID 598

Length = 620

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 24/89 (26%), Positives = 29/89 (32%)

Query: 52  PPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEK 111
           P     +   PP  A +             P    PP   V+P   P    KP P  K K
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPK 116

Query: 112 PTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
           P P P  K    P     P P  ++K  P
Sbjct: 117 PKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 49  PKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPP 108
           P P P  P   P PPPPA K   P      P     +   P K KP     P  KP    
Sbjct: 17  PAPAPPSPAAAPAPPPPA-KTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP--KPASLW 73

Query: 109 K 109
           K
Sbjct: 74  K 74

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 64  PPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPT 123
            PA  PP P      PPP        P  K + P     +   P K+KP      K    
Sbjct: 16  QPAPAPPSPAAAPAPPPPA---KTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Query: 124 PPNVRYPPPPKQQKT 138
                +   P++ KT
Sbjct: 73  WKLEDFVVEPQEGKT 87

Length = 475

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 28/125 (22%), Gaps = 12/125 (9%)

Query: 21  SSLACDCSKPTPPPPSSPNCPPPPHSPSPKPP--PRPPKVKPTPPP-------PAVKPPP 71
           +++             +      P + +         P   P PP         A    P
Sbjct: 389 AAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAP 448

Query: 72  PPKVKTTPPPPVVKPPPPPKVKPSTPPP---PVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
            P           +        P+       P    PP    +P P     S  TP  V 
Sbjct: 449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVP 508

Query: 129 YPPPP 133
               P
Sbjct: 509 DARAP 513

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 3/96 (3%)

Query: 49  PKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKP-PPPPKVKPSTPPPPVVKPPPP 107
           P  P   P+V P    PA              PP     PPPP   P   P   +     
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 108 PKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINA 143
                          T        P    +  P+N+
Sbjct: 421 QLLAARQQLQRAQGATKAKK--SEPAAASRARPVNS 454

Length = 647

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 33  PPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKV 92
               +    P P  P  +P P      P  P P  KP   PK +  P  P  KP P PK 
Sbjct: 49  LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTP-PKPKEKPKPEKKPKKPKPKPKPKPKP 107

Query: 93  KPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNV 127
           KP   P P  K PP       P    +    P   
Sbjct: 108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAA 142

Length = 244

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 27/104 (25%), Positives = 35/104 (33%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P  P+    P PP   SP PPP  P     PP PA       +   +P PP    PP 
Sbjct: 95  LAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPA 154

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
               P+                 +P    ++P +PP    P  P
Sbjct: 155 AGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP 198

Length = 1352

>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 11/100 (11%), Positives = 16/100 (16%), Gaps = 4/100 (4%)

Query: 37  SPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPST 96
            P   P              K +              +   T   P              
Sbjct: 55  QPVSSPEFSHVGSARENGTKKTQNQVSE--GVDEILKESGLTSSKPSDIVISSRSKLKKV 112

Query: 97  PPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
            P P + P P      + P                   Q+
Sbjct: 113 FPDPKLNPLPVK--PHSVPVPSSDTKNKSTAIDKENKGQK 150

Length = 629

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 20/88 (22%), Positives = 25/88 (28%), Gaps = 1/88 (1%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPP-PAVKPPPPPKVKTTPPPPVVKP 86
           S+ T     S   P    SP PKP      +   P                      VKP
Sbjct: 545 SRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKP 604

Query: 87  PPPPKVKPSTPPPPVVKPPPPPKEKPTP 114
                 KP T P   +KP     + P+ 
Sbjct: 605 KGSASSKPLTGPGSDLKPATLNGKTPSS 632

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPA--VKPPPPPKVKTTPPPPVVKPP 87
           P  P P+    PP   +  P   P       + P PA     P PP+    P P      
Sbjct: 698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
           PPP   P+    P   PPP P  +        +P      R
Sbjct: 758 PPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 26/123 (21%), Positives = 32/123 (26%), Gaps = 8/123 (6%)

Query: 16  SGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPK-PPPRPPKVKPTPPPPAVKPPPPPK 74
           S A  +  A   +    P  +    P P  +P+    P       P P   A    P   
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAG---PRPVAAAAAAAPARA 483

Query: 75  VKTTPPPPVVKPPPP----PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYP 130
                P P    PPP    P    S  P      P     +  P P    P        P
Sbjct: 484 APAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 131 PPP 133
            P 
Sbjct: 544 APA 546

Length = 700

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 18/69 (26%), Positives = 22/69 (31%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
                +    P     P+    P P  V+P  P P  KP P PK +     P    P P 
Sbjct: 77  AGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPK 136

Query: 91  KVKPSTPPP 99
            V      P
Sbjct: 137 PVVEEKAAP 145

Length = 226

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 6/69 (8%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTP---PPPAVKPPPPPKVKTTPPPPVVKP 86
           P P  P     P P     P+ P   P   P+P   P P  +PP        P P    P
Sbjct: 395 PEPDLPQPDRHPGPA---KPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAP 451

Query: 87  PPPPKVKPS 95
                 KP 
Sbjct: 452 RNVASGKPG 460

Length = 620

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 24/113 (21%), Positives = 34/113 (30%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
              T  P +     P     +  P     +  PTPP P+   PPPP      PPP   P 
Sbjct: 74  GPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPD 133

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
               ++P   P P     PP            +  +         P++    P
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAP 186

Length = 1352

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 19/92 (20%), Positives = 24/92 (26%), Gaps = 1/92 (1%)

Query: 41  PPPPHSPSPKPP-PRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPP 99
           P    + + K      P+    P        P     + P    +   PP       P  
Sbjct: 356 PSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGL 415

Query: 100 PVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPP 131
                P  P     P PV   PP P N    P
Sbjct: 416 VSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMP 447

Length = 663

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 15/70 (21%), Positives = 18/70 (25%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P  P         P       PP     + P P  PA   P P        P     P P
Sbjct: 682 PVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEP 741

Query: 90  PKVKPSTPPP 99
           P  + +    
Sbjct: 742 PGAEQADGAE 751

Length = 753

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 19/78 (24%)

Query: 1   MGKYQLTSFLIVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKP 60
           MG Y  T   +V  N+   L S      + TPP P     P P  +P P P P P    P
Sbjct: 897 MGAYDYT---LVEDNNDWYLRS-----QEVTPPSP-----PDPDPTPDPDPTPDP---DP 940

Query: 61  TP---PPPAVKPPPPPKV 75
           TP   P PA +P    KV
Sbjct: 941 TPDPEPTPAYQPVLNAKV 958

Length = 1250

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 23/117 (19%), Positives = 29/117 (24%), Gaps = 6/117 (5%)

Query: 41  PPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTP----PPPVVKPPPPPKVKPST 96
                +P P                  +PP      + P    PP     P P    PS 
Sbjct: 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501

Query: 97  PPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLSACVDVL 153
             P  V     P           +   PP     PP          A   +A +DVL
Sbjct: 502 ATPAAVPDARAPAAASREDAP--AAAAPPAPEARPPTPAAAAPAARAGGAAAALDVL 556

Length = 830

>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning]

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 33  PPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKV 92
                P  P     P+   P +P   +  PP  A +P  P   +   P PV    P P V
Sbjct: 99  IKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLP--QEAPAPQPVHSAAPQPAV 156

Query: 93  KPSTPPPPVVKPPPPPKEKPTPPPVVKSPPT 123
           +   P  P  +    P+E   P P VK PP 
Sbjct: 157 QTVQPAVPEQQ--VQPEEVVEPAPEVKRPPR 185

Length = 324

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 16/53 (30%), Positives = 19/53 (35%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPP 81
            P P  PS+P       +PSP P    P +     P    P PP      PP 
Sbjct: 386 PPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 19/75 (25%)

Query: 69  PPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
           P            P    P P    P  P  P           P+PPP   SPP P    
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 129 YPPPPKQQKTCPINA 143
              P         NA
Sbjct: 421 PTEPSPTPPANAANA 435

Length = 620

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
           +  P P   P    P   P+ + P + P+ +P   P      P P       P    P  
Sbjct: 198 RHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTP-----QNPAQQPPQT 252

Query: 89  PPKVKPST 96
               K S 
Sbjct: 253 EQGHKRSR 260

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 60  PTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKV--KPSTPPPPVVKPPPPPKEKPTPPPV 117
           P PP  A   P P       PPP   PP PP    +P+   P     PP     P     
Sbjct: 382 PAPPSAAWGAPTPA--APAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSAD 439

Query: 118 VKSPPT 123
             +  +
Sbjct: 440 PAAAAS 445

Length = 576

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 30  PTPPPPSSPNCPPPPHSP-----SPKPPPRPPKVKPTP---PPPAVKPPPPPKVKTTPP- 80
             PPPPSS    PP  S      S  P  R P+V   P    P   +P  PP     PP 
Sbjct: 186 IQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPI 245

Query: 81  PPVVKPPPPPKVKPSTPPPPVV-------KPPPPPKEKP 112
           PPV++   PP V P  P  P+        + P  P++ P
Sbjct: 246 PPVIQYVAPPPVPPPQPIIPIQHIRAVTGETPANPRDIP 284

Length = 582

>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 86  PPPPPKVKPSTPPPPVVKPPPPPKEKPTPP 115
           PPPP +V  +             ++KP  P
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPASP 398

Length = 509

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 22/103 (21%), Positives = 32/103 (31%)

Query: 36  SSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPS 95
           +S + P   + P+    P  P   P  PP    P P P V          P  P K +  
Sbjct: 100 TSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAK 159

Query: 96  TPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
           +P P     P P +          +    P       P ++ T
Sbjct: 160 SPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTT 202

Length = 209

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 1/101 (0%)

Query: 41  PPPPHSPSPKPPPRP-PKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPP 99
           PP    P P+P   P P+ +P P PP   P   PK +  P P     P P K     P  
Sbjct: 60  PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119

Query: 100 PVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
            V    P P          +   +        P     + P
Sbjct: 120 EVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGP 160

Length = 246

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 14  LNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKV-----KPTPPPPAVK 68
           L  GA     A     PTP  P+     PPP +  P PP  P +       P P PPA  
Sbjct: 377 LERGAPAPPSAAW-GAPTPAAPA----APPPAAAPPVPPAAPARPAAARPAPAPAPPAAA 431

Query: 69  PPPPPKVKTTPPP 81
            PP          
Sbjct: 432 APPARSADPAAAA 444

Length = 576

>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 12/85 (14%)

Query: 44  PHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVK 103
           PH    K   R    +    P  +             P  ++ P P         P + +
Sbjct: 895 PHPAQGKAEWRLRFTRRDWDPVGLPVEAAQTDTLEALPDWLRAPAP-------AEPALPR 947

Query: 104 PPPP-----PKEKPTPPPVVKSPPT 123
           P  P       +   P   V+S   
Sbjct: 948 PLAPSGLGGAIDSALPGEAVRSSLG 972

AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species [DNA metabolism, DNA replication, recombination, and repair]. Length = 1135

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 15/69 (21%), Positives = 19/69 (27%)

Query: 55  PPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTP 114
           P   + T           P   T  P PV  P           P PV   P  P  +   
Sbjct: 112 PQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVE 171

Query: 115 PPVVKSPPT 123
            P V++   
Sbjct: 172 APKVEAEKE 180

Length = 256

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 17/66 (25%), Positives = 18/66 (27%), Gaps = 3/66 (4%)

Query: 77  TTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP-PVVKSPPTPPNVRYPPPPKQ 135
              P P    P      P  P P     P        PP   V+   TPP V  PP P  
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPV--PPRPVA 418

Query: 136 QKTCPI 141
                 
Sbjct: 419 PPVPHT 424

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 18/109 (16%), Positives = 21/109 (19%), Gaps = 7/109 (6%)

Query: 35  PSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKP 94
           P+                P     +P  P     P  P        P      P P V  
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 95  STPPPPVVKPPPP-------PKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
               P  V  P         P +     P    P   P     P     
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698

Length = 824

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
            P    P++        +   KP    P      PP A KP PP   K   P P      
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPT---PEPPAASKPTPPAAAKPPEPAP---AAK 176

Query: 89  PPKVKPSTPPPPVVKPP 105
           PP    +   P   + P
Sbjct: 177 PPPTPVARADPRETRVP 193

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 17/64 (26%), Positives = 20/64 (31%)

Query: 84  VKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINA 143
             PP       +        P  P    PTP P   S PTPP    PP P      P   
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Query: 144 LKLS 147
           +  +
Sbjct: 182 VARA 185

Length = 418

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P  P      PPP    P+   +PP+ +  PPP     P P   +    P    PP  
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL--PPPQQ 301

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTP 114
           P++ P    P   +  P  +E+   
Sbjct: 302 PQLLPLVQQPQGQQRGPQFREQLVQ 326

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 70  PPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
           PP        P     P  PP    + PP P   P  P   +P P P   +   PP
Sbjct: 384 PPSAAWGAPTPAA---PAAPPPA--AAPPVPPAAPARPAAARPAPAPAPPAAAAPP 434

Length = 576

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 23/110 (20%), Positives = 30/110 (27%)

Query: 16  SGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKV 75
           SG    S     +  +  P      P P    S   P  P     +              
Sbjct: 273 SGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSS 332

Query: 76  KTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
             +     V P P P   PS   PP    P  P+++P P     SP    
Sbjct: 333 SESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382

Length = 1352

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 35/107 (32%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVK-PTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           KP+  P  S     P     PK P  P K K P       +P  P   +    P   K P
Sbjct: 568 KPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRP 627

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPK 134
             PK  P  PPPP     P   E+P  P ++KSP  P + + P  PK
Sbjct: 628 ESPK-SPKRPPPPQ---RPSSPERPEGPKIIKSPKPPKSPKPPFDPK 670

Length = 943

>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 17/115 (14%), Positives = 27/115 (23%), Gaps = 3/115 (2%)

Query: 16  SGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKV 75
             A+  +LA        P  +  N    P  P P P  + P       PPA  P   P  
Sbjct: 318 VQAIQEALAQ---SGLIPAAAGANQVLEPAEPEPLPLQQTPLYASGSSPPASSPSSAPPE 374

Query: 76  KTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYP 130
           ++            P    ++                       +        +P
Sbjct: 375 QSEESQEESSAEKNPLQPNASQSEAAAAASAEAAAAAPAAAPEPAEAAEEADSFP 429

Length = 617

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
                        P + + +    P   +  P P A +    P+V   PPP    P    
Sbjct: 33  RELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEV---PPPVPPAPAQEG 89

Query: 91  KVKPSTPPPPVVKPPPPPKEKPTP-PPVVKSPPTPP 125
           +   +  P       P P   P P  PV  S    P
Sbjct: 90  EAPAAEQP----SAVPAPSAAPAPAEPVEPSLAANP 121

Length = 931

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPP 73
           S PT    ++   P P   P P+ PP P   +    PP V P   P
Sbjct: 379 SAPTAAATAAG-APLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 14/59 (23%), Positives = 20/59 (33%)

Query: 24  ACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPP 82
           A   + P   P +    P PP   +P+    P +V P P   +  P P          P
Sbjct: 432 AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
           K    P           +P  + P    + +P  P PA  P P P      P P   PPP
Sbjct: 376 KRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAP-----TPVPASAPPP 430

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTP 124
           P    PS  P     P PPP+ +P  P    +P  P
Sbjct: 431 PATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466

Length = 3151

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 24/101 (23%), Positives = 29/101 (28%), Gaps = 2/101 (1%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
            +  P PP+ P  PP P    PKP  +P   K    P     P P       P P  K P
Sbjct: 63  PEEQPKPPTEPETPPEP--TPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
           P      +   P     PP             +       R
Sbjct: 121 PSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRR 161

Length = 244

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 5/62 (8%)

Query: 77  TTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
              PP      P P       PPP   PP PP     P     + P P            
Sbjct: 381 APAPPSAAWGAPTP--AAPAAPPPAAAPPVPP---AAPARPAAARPAPAPAPPAAAAPPA 435

Query: 137 KT 138
           ++
Sbjct: 436 RS 437

Length = 576

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 19/104 (18%), Positives = 24/104 (23%), Gaps = 7/104 (6%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAV--KPPPPPKVKTTPPPPVVKP 86
           K   P     N  PPP SP          +    P  A   +P P          P    
Sbjct: 524 KELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFA 583

Query: 87  P---PPPKVKPSTPPPPVVKPPPP--PKEKPTPPPVVKSPPTPP 125
                   ++        VKP      K    P   +K      
Sbjct: 584 NTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNG 627

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 1/95 (1%)

Query: 18  ALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKT 77
           ALL +L      P+    +     P P   + +      +V+     P            
Sbjct: 334 ALLHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP-TAAATAAGAPL 392

Query: 78  TPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKP 112
               P  + PP P+   S   PP+V P   P    
Sbjct: 393 PDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 16/90 (17%), Positives = 21/90 (23%), Gaps = 1/90 (1%)

Query: 49  PKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPP 108
           P+    P  + P  P       P   V+            PP      PP     P    
Sbjct: 417 PRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQD 476

Query: 109 KEKPTPPPVVKSP-PTPPNVRYPPPPKQQK 137
             +P               V     P+ QK
Sbjct: 477 LPQPQSTASQGGQNKKLAQVLASATPQMQK 506

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 18/70 (25%), Positives = 20/70 (28%)

Query: 37  SPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPST 96
           + N   P  +    P   PP  K   P        PP  K   P        P   K  T
Sbjct: 27  AANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVET 86

Query: 97  PPPPVVKPPP 106
           P  P  K  P
Sbjct: 87  PQSPTTKQVP 96

Length = 291

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 13/68 (19%), Positives = 16/68 (23%)

Query: 42  PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPV 101
           PP        PP        P   A             P   +   P      + PP P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 102 VKPPPPPK 109
             P P  +
Sbjct: 451 AAPQPAVR 458

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 14/78 (17%), Positives = 16/78 (20%), Gaps = 7/78 (8%)

Query: 43  PPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVV 102
           PP        P      P  P  A  P                  P   +          
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAA-------AAPAAGGPAAALAAVPDAAAAA 443

Query: 103 KPPPPPKEKPTPPPVVKS 120
             PP P   P P   + S
Sbjct: 444 AAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 29  KPTPPPPSSPNCPPP----PHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVV 84
           +P  P P  P  P P    P  P P  P  P  V P P    V P P   V   P  PV+
Sbjct: 562 EPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDP----VDPDP---VDPEPVDPVI 614

Query: 85  KPPPPPKVKPSTPPP 99
             P  P +  S  PP
Sbjct: 615 PDPTIPDIGQSDTPP 629

Length = 955

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 49  PKPPPRPPKVKPTPPPPAVKPP--PPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPP 106
           P  P  P  V P  P P +  P  P P     P P +  P  P  V P    P +  P  
Sbjct: 560 PDEPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTI 619

Query: 107 PPKEKPTPPPVVKSPPTP 124
           P   +   PP+ +    P
Sbjct: 620 PDIGQSDTPPITEHQFRP 637

Length = 955

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 28/118 (23%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPP----PPKVKTTPPPPVVKP 86
              PP+     P   + +P     PP     PP  A  PP     PP     PP     P
Sbjct: 232 AAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAP 291

Query: 87  PPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTP---PNVRYPPPPKQQKTCPI 141
           P      P+       K    P +   PP    +PP     P  +   PP +    P+
Sbjct: 292 PAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349

Length = 357

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 34  PPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVK 93
           P       PPP +  P+P P+PP  +     PA           +P       PP     
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPA----ANPPATFAL 103

Query: 94  PSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
           P+ P  P ++  P        P +V   P          P QQ
Sbjct: 104 PAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSP---LDQPAQQ 143

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 26  DCSKPTPPPPSSPNCPPPPHSPSPKPP-PRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVV 84
           D ++P  P P+S   P P   P+  PP P  P     P       PPP +    P     
Sbjct: 403 DQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPA 462

Query: 85  KPPPPPKVKPSTPPPPVVKPPPPP 108
              P    + +       +PP PP
Sbjct: 463 PDDPDDATRKALDALRERRPPEPP 486

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 23/124 (18%), Positives = 25/124 (20%), Gaps = 18/124 (14%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
                  P     P         P          PPP      P       P  P   P 
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 88  PPPKVKPSTPPPP------------------VVKPPPPPKEKPTPPPVVKSPPTPPNVRY 129
             P    +  P                     V  PP P + P P      PP PP    
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 130 PPPP 133
              P
Sbjct: 767 AAAP 770

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTP---PPPAVKPPPPPKVKTTPPPPVV 84
                P P+    P P    +PK         P P    PP   P  P +   TPP    
Sbjct: 374 PANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAA 433

Query: 85  KPPPPPKVKP 94
             PP   ++ 
Sbjct: 434 NAPPSLNLEE 443

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 15/91 (16%), Positives = 18/91 (19%), Gaps = 2/91 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRP-PKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
                 +          P+     RP              P    K          K   
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATN 485

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVK 119
           P +VK      P         EK TP    K
Sbjct: 486 PVEVKKEPVATPKALKKALEHEK-TPELAAK 515

Length = 647

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 19/52 (36%), Positives = 22/52 (42%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPP 81
            TP  P      PP   P  KP P+P   +    PPA KP P P V+    P
Sbjct: 94  NTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 31/139 (22%), Positives = 43/139 (30%), Gaps = 4/139 (2%)

Query: 12  VLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPP--PPAVKP 69
            L++  A L+++              P  PPP   P  + P    +  PT      A   
Sbjct: 42  QLVSDSAELAAVTVVAGAAACDRFEPPTGPPP--GPGTEAPANESRSTPTWSLSTLAPAS 99

Query: 70  PPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRY 129
           P      T P P    PPPP     S PP P        +   +P P   + P       
Sbjct: 100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP 159

Query: 130 PPPPKQQKTCPINALKLSA 148
                   +    AL LS+
Sbjct: 160 AAVASDAASSRQAALPLSS 178

Length = 1352

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 24/119 (20%), Positives = 34/119 (28%), Gaps = 9/119 (7%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPP--------PPPKVKTTPPP 81
            T    + P  P  P   +   P   P  +  PP P   PP        P     +T P 
Sbjct: 67  ATSTIYTVPRPPRGPE-QTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPR 125

Query: 82  PVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
            + +   P  + P        +     +E   PPP            YP    + KT  
Sbjct: 126 FLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHK 184

Length = 580

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 36  SSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPS 95
           ++P  P    +P+P      P   P    P   P PP      P P     P       S
Sbjct: 205 AAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAP---APAPAKTAAPAAAAPVSS 261

Query: 96  TPPPPVVKP 104
               P V P
Sbjct: 262 GDSGPYVTP 270

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 11/38 (28%), Positives = 13/38 (34%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPA 66
                   S    P   + +P PPP PP   P PP   
Sbjct: 282 MTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319

Length = 656

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 42  PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTT---PPPPVVKPPPPPKVKPSTPP 98
           PPP +P+P  PP  P  +   P  A     PP        PP        PP   P    
Sbjct: 696 PPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755

Query: 99  PPVVKPPPPPKE-----KPTPPPVVKSPPTP-PNVRYPPPPKQQKTCPINALKLS 147
           PP   P            PTP P  ++PP P    R  P P+        +++L 
Sbjct: 756 PPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLM 810

Length = 991

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 13/98 (13%), Positives = 20/98 (20%), Gaps = 11/98 (11%)

Query: 36  SSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPS 95
           +     PP  S   K           P   A +P   P  +       +     P    +
Sbjct: 78  NDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVT 137

Query: 96  TP------PPPVVKPPPPPKEKPTPPPVVKSPPTPPNV 127
                         P    +     P    +   P N 
Sbjct: 138 GRVTKEDIIKKTEAPASAQQ-----PAPAAAAKAPANF 170

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 28/61 (45%), Positives = 30/61 (49%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P PPPPS+    P P +P P PPP  P       P A  PPPP      PPPPV    PP
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102

Query: 90  P 90
           P
Sbjct: 103 P 103

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 8/55 (14%), Positives = 11/55 (20%), Gaps = 1/55 (1%)

Query: 43  PPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTP 97
                +P          P     A      P     P  P  +    P +   T 
Sbjct: 85  SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAP-APAAPAAPAAEVAADPDIPAGTE 138

Length = 464

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
            P    ++ PPP   PP PP  +  PPP    PP  P
Sbjct: 905 APGGDAASAPPPGAGPPAPP--QAVPPPRTTQPPAAP 939

Length = 991

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 7/77 (9%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPK 91
            P   + +        +P+P   P      PPPP +     P    +        PP   
Sbjct: 681 DPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPE-- 738

Query: 92  VKPSTPPPPVVKPPPPP 108
                P PP  +     
Sbjct: 739 -----PEPPGAEQADGA 750

Length = 753

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 14/59 (23%), Positives = 14/59 (23%), Gaps = 1/59 (1%)

Query: 76  KTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPK 134
           K     P   PP P       PPP     P      P         P     R    PK
Sbjct: 11  KGEAEQPAPAPPSPAAAPAP-PPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPK 68

Length = 475

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 52  PPRPPKVKPTPPP-PAVKPPPPPKVKTTPP-PPVV 84
           PP PP   PTP P P   P P P  + TP   PV+
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVL 954

Length = 1250

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 11/80 (13%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPK 91
            P            +   +PP    + +P  PP     P    V+   P PV   P  P 
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAP----VQPQTPAPVRTQPAAPV 166

Query: 92  VKPSTPPPPVVKPPPPPKEK 111
            +        V+ P    EK
Sbjct: 167 TQA-------VEAPKVEAEK 179

Length = 256

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 14/69 (20%), Positives = 15/69 (21%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPK 91
           PP P      PP    +P  P            PA   P                PP P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 92  VKPSTPPPP 100
             P      
Sbjct: 451 AAPQPAVRL 459

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 1/67 (1%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                P      P   + +  P           P  A+   P         PP     P 
Sbjct: 396 GGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDA-AAAAAAPPAPAAAPQ 454

Query: 90  PKVKPST 96
           P V+ ++
Sbjct: 455 PAVRLNS 461

Length = 598

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 30  PTPPPPSSPN-CPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTT---PPPPVVK 85
           P  PP + P     P  +     PP     +  PP  A     PP        PP     
Sbjct: 703 PMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 762

Query: 86  PPPPPKVKP--STPPPPVVKPPPP---PKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
              PP   P   TP PP   PP P   P+  PTP P  ++ PT   +     P QQ
Sbjct: 763 RARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQ 818

Length = 991

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 51 PPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPS 95
          PP  PP   P PPPP  +PP  P     PPPP V      + + S
Sbjct: 5  PPGNPP---PPPPPPGFEPPSQP---PPPPPPGVNVKKRSRKQLS 43

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 6/28 (21%)

Query: 80  PPPVVKPPPPPKVKPSTPPPPVVKPPPP 107
           PPP   PPPPP  +P + PPP   PPPP
Sbjct: 9   PPP---PPPPPGFEPPSQPPP---PPPP 30

Length = 2365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	100.0
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	100.0
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	97.08
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	96.97
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	96.94
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	96.88
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	94.6
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	94.08
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	93.19

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=100.00  E-value=1.7e-34  Score=220.74  Aligned_cols=85  Identities=52%  Similarity=1.117  Sum_probs=83.1

Q ss_pred             CCCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCC
Q 040356          138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPP  217 (226)
Q Consensus       138 ~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP  217 (226)
                      +||+|++||++|+||| ||+++.+|++.+++||++|+||+|+|||+|||+|||+|+||+||+|||+++++|+|.|||++|
T Consensus         1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence            6999999999999999 799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCC
Q 040356          218 AGFQCP  223 (226)
Q Consensus       218 ~GF~C~  223 (226)
                      +||+|+
T Consensus        80 ~gf~C~   85 (85)
T PF14547_consen   80 SGFTCP   85 (85)
T ss_pred             CCCcCC
Confidence            999996

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=100.00  E-value=1.5e-34  Score=221.77  Aligned_cols=84  Identities=51%  Similarity=1.049  Sum_probs=81.6

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCC
Q 040356          137 KTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYP  216 (226)
Q Consensus       137 ~~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~v  216 (226)
                      ++||||+||||+|+|||| +++..+|++++++||++|+||+|+|||+|||||||+|+|| |++|+|++|++|+|.|||++
T Consensus         2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~   79 (85)
T cd01958           2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV   79 (85)
T ss_pred             CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence            689999999999999995 8888899999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCCcC
Q 040356          217 PAGFQC  222 (226)
Q Consensus       217 P~GF~C  222 (226)
                      |+||+|
T Consensus        80 P~gf~C   85 (85)
T cd01958          80 PPGFTC   85 (85)
T ss_pred             CCCCcC
Confidence            999998

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=97.08  E-value=0.00022  Score=49.09  Aligned_cols=76  Identities=30%  Similarity=0.630  Sum_probs=50.3

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceec---cccchhhHHhhhhcCCC
Q 040356          139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLIN---LLVPISLQVLVNDCGKY  215 (226)
Q Consensus       139 CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlIn---lniPi~L~lLLN~CGK~  215 (226)
                      |.....++..|.+.+.+..   ....+.++||..++++.   .+.|+|.+|+..+.+++.   ++. .....|.+.||..
T Consensus         1 C~~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~-~~a~~lp~~C~~~   73 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNA-QNAASLPSACGVP   73 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhH-HHHHhhHHhcCCC
Confidence            3344455557777663210   12346688999999887   778999999988776321   233 3445578899998


Q ss_pred             CCCCCcC
Q 040356          216 PPAGFQC  222 (226)
Q Consensus       216 vP~GF~C  222 (226)
                      .+. +.|
T Consensus        74 ~~~-~~C   79 (79)
T smart00499       74 PPY-TDC   79 (79)
T ss_pred             CCC-CCC
Confidence            775 554

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=96.97  E-value=0.0001  Score=54.11  Aligned_cols=56  Identities=27%  Similarity=0.621  Sum_probs=34.7

Q ss_pred             CCCCCCCchhhcCCcccccchhhhHHhhhcc-CceeccccchhhHHhhhhcCCCCCCCCcC
Q 040356          163 DSAKEKCCPLLHGLVDLDAAICLCTAIRIKA-PNLINLLVPISLQVLVNDCGKYPPAGFQC  222 (226)
Q Consensus       163 ~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnv-LGlInlniPi~L~lLLN~CGK~vP~GF~C  222 (226)
                      ..+...||..++.+++ ....|||..++... .+ +++|...++. |...||...+. ++|
T Consensus        40 ~~Ps~~CC~~l~~~~~-~~~~ClC~~~~~~~~~~-~~in~~~a~~-Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   40 PAPSAACCSALKSVVQ-ADPPCLCQLLNSPGAPG-FGINVTRALA-LPAACGVPVPP-SKC   96 (96)
T ss_dssp             ----HHHHHHHCC-----HCCHHHCCCC-CCHCH-HCCTCHHHHH-HHHHCTSS-S-----
T ss_pred             CCCCHHHHHHHHHhcc-CCCCCHHHhcCcccccc-CCcCHHHHHH-HHHHcCCCCCC-CCC
Confidence            4577889999999976 45899999999877 55 5666656664 67899999998 887

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=96.94  E-value=0.0002  Score=52.29  Aligned_cols=70  Identities=23%  Similarity=0.399  Sum_probs=47.0

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCCCCCc
Q 040356          142 NALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQ  221 (226)
Q Consensus       142 DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP~GF~  221 (226)
                      |...|..|...+.|-   .-...+.+.||+-|+++   |. .|+|..++++.+.+|  |...+. .|.+.||..++. |+
T Consensus         4 ~~~~L~~C~~yl~~~---~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~i--~~~~a~-~Lp~~Cgv~~p~-~~   72 (73)
T cd04660           4 DLDLLAECQPYVTGP---NPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQII--DPDKAV-YLPAKCGLPLPP-SS   72 (73)
T ss_pred             CHHHHHHHHHHHcCC---CCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCccccc--CHHHHH-HHHHHcCCCCCC-CC
Confidence            344667787766310   00123567899999974   32 399999998766634  443444 578899999999 98


Q ss_pred             C
Q 040356          222 C  222 (226)
Q Consensus       222 C  222 (226)
                      |
T Consensus        73 C   73 (73)
T cd04660          73 C   73 (73)
T ss_pred             C
Confidence            8

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=96.88  E-value=0.0002  Score=52.50  Aligned_cols=63  Identities=22%  Similarity=0.462  Sum_probs=46.9

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCCC
Q 040356          143 ALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPA  218 (226)
Q Consensus       143 aLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP~  218 (226)
                      ..+|..|...+.      .|.+++.+||..|+.     +..|||..+|...|+ ..||.+.+++ |.+.||..+|.
T Consensus         3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~-l~~~Cgv~~P~   65 (66)
T cd01959           3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARK-VLAACGVPYPN   65 (66)
T ss_pred             hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHH-HHHHcCCCCCC
Confidence            457888997653      356788899999995     337999999876666 3456666776 66799998863

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=94.60  E-value=0.011  Score=40.96  Aligned_cols=60  Identities=27%  Similarity=0.561  Sum_probs=37.7

Q ss_pred             cccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceecc-ccchhhHHhhhhcC
Q 040356          147 SACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINL-LVPISLQVLVNDCG  213 (226)
Q Consensus       147 gvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInl-niPi~L~lLLN~CG  213 (226)
                      ..|.+.+.|     -+..+...||.-++.+.+. ...|||..++........+ |. .....|.+.||
T Consensus         2 ~~C~~y~~~-----~~~~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~~~~~~~-~~a~~LP~~Cg   62 (63)
T cd00010           2 APCLSYLTG-----GATAPPSDCCSGLKSVVKS-DPKCLCAALNGPGASLLGLKNA-TRALALPAACG   62 (63)
T ss_pred             cchHHHHcC-----CCCCCChHHHHHHHHHHhc-ChhhHHHHHcCccccccCcccH-HHHHhchHhcC
Confidence            356666532     1234678899999988766 4569999999765432112 22 23345667887

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=94.08  E-value=0.002  Score=47.26  Aligned_cols=68  Identities=31%  Similarity=0.632  Sum_probs=47.1

Q ss_pred             cCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCcee----------ccccchhhHHhhhhcC
Q 040356          144 LKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLI----------NLLVPISLQVLVNDCG  213 (226)
Q Consensus       144 LKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlI----------nlniPi~L~lLLN~CG  213 (226)
                      ..|..|...+.|-    . ....+.||.-|++|    ...|.|.+|+..+.+++          .++.- ....|.+.||
T Consensus        13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C~   82 (90)
T PF00234_consen   13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMCN   82 (90)
T ss_dssp             SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHTT
T ss_pred             ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHCC
Confidence            4567777666421    1 13456799999988    88999999998887721          34433 4445888999


Q ss_pred             CCCCCCCcC
Q 040356          214 KYPPAGFQC  222 (226)
Q Consensus       214 K~vP~GF~C  222 (226)
                      ..++. |.|
T Consensus        83 v~~~~-~~C   90 (90)
T PF00234_consen   83 VSPPY-TDC   90 (90)
T ss_dssp             SSSSS-S-G
T ss_pred             CCCCC-CCC
Confidence            99887 665

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=93.19  E-value=0.024  Score=42.25  Aligned_cols=68  Identities=25%  Similarity=0.443  Sum_probs=44.4

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhcCCccc----ccchhhhHHhhhccCceec-cccchhhHHhhhhcCCCCC
Q 040356          143 ALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDL----DAAICLCTAIRIKAPNLIN-LLVPISLQVLVNDCGKYPP  217 (226)
Q Consensus       143 aLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDl----dAAvCLCtAIKAnvLGlIn-lniPi~L~lLLN~CGK~vP  217 (226)
                      ..+|.-|.+.+.|     -+..+...||.-++.|.+.    +...|+|.-++..+.+ +. ||...+++ |-..||-..+
T Consensus         7 ~~~l~~C~~y~~g-----~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~~a~~-LP~~C~v~~~   79 (89)
T cd01960           7 TSLLAPCLGYLTG-----GGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPGRAAG-LPGKCGVSIP   79 (89)
T ss_pred             HhhHHhHHHHHhC-----CCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHHHHHh-ChHhcccCCC
Confidence            4567778877643     2234678899999998654    2345667667776666 33 55445554 6779998754

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
1hyp_A	80	Crystal Structure Of Hydrophobic Protein From Soybe		7e-06

>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A Member Of A New Cystine-Rich Family Length = 80

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 14/89 (15%)
Query: 135 QQKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAP 194
            + +CP     LS C+++LGG +         + CC L+ GL D++A +CLC  I+++A 
Sbjct: 4   TRPSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLC--IQLRAL 51
Query: 195 NLINLLVPISLQVLVNDCGKYPPAGFQCP 223
            ++NL    +LQ+++N CG+  P+   CP
Sbjct: 52  GILNL--NRNLQLILNSCGRSYPSNATCP 78
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	2e-19
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-13
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-13
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-12
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-11
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-08
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-10
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-10
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-09
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	6e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-10
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-07
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	9e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	7e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	3e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	7e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	8e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	9e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	4e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	8e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	8e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	1e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	2e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	4e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	6e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	6e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	8e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-04
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	2e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	2e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	4e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	6e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-04
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	7e-04

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 78.4 bits (193), Expect = 2e-19
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 14/88 (15%)

Query: 136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPN 195
           + +CP     LS C+++LGG +         + CC L+ GL D++A +CLC    ++A  
Sbjct: 5   RPSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQ--LRALG 52

Query: 196 LINLLVPISLQVLVNDCGKYPPAGFQCP 223
           ++N  +  +LQ+++N CG+  P+   CP
Sbjct: 53  ILN--LNRNLQLILNSCGRSYPSNATCP 78

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 68.1 bits (165), Expect = 2e-13
 Identities = 9/104 (8%), Positives = 16/104 (15%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
                 P +        S   +        +              +   T          
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPP 132
                 +       KP     E     P  ++ P         P
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 67.7 bits (164), Expect = 3e-13
 Identities = 13/113 (11%), Positives = 21/113 (18%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           S       S  +      +          + K                 +          
Sbjct: 30  SGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAE 89

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
                KP      VV   P  + KP      ++ P   N      P  +    
Sbjct: 90  AASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKT 142

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 65.0 bits (157), Expect = 2e-12
 Identities = 5/110 (4%), Positives = 11/110 (10%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
                            + + K        +                             
Sbjct: 29  NSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETA 88

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
                              P  +  P    ++   P         K    
Sbjct: 89  EAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 61.1 bits (147), Expect = 4e-11
 Identities = 9/110 (8%), Positives = 18/110 (16%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
                  ++          + +      +   T    A           T        P 
Sbjct: 38  SGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPE 97

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
               +     P     P   KE    P                  +++  
Sbjct: 98  EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQ 147

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 57.3 bits (137), Expect = 7e-10
 Identities = 12/111 (10%), Positives = 22/111 (19%), Gaps = 6/111 (5%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           S       +             +          T  P           +T       KP 
Sbjct: 44  STNEADKQNE---GEHARENKLEKAEGVATASETASP---ASNEAATTETAEAASAAKPE 97

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
                  +  P    KP    + +  P    +   + P        K+ + 
Sbjct: 98  EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQP 148

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 3/91 (3%), Positives = 13/91 (14%)

Query: 50  KPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPK 109
           +                V                 +     K++ +       +   P  
Sbjct: 20  QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79

Query: 110 EKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
            +       ++               +    
Sbjct: 80  NEAATTETAEAASAAKPEEKASEVVAETPSA 110

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.5 bits (122), Expect = 7e-08
 Identities = 6/94 (6%), Positives = 11/94 (11%)

Query: 47  PSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPP 106
                 P              +       K        +         +T          
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 107 PPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
                 T      + P              +  P
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAETPSAEAKP 114

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 58.8 bits (140), Expect = 3e-10
 Identities = 15/90 (16%), Positives = 20/90 (22%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           +  T   P S     P    +    P               P    +  T P  P     
Sbjct: 403 TSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTK 462

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPV 117
           P  + +    P PV          PT    
Sbjct: 463 PTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 58.0 bits (138), Expect = 4e-10
 Identities = 19/100 (19%), Positives = 24/100 (24%), Gaps = 6/100 (6%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                 +       P  P                   ++    PKV    P P VKP   
Sbjct: 401 GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPT-- 458

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRY 129
               P+ P     KP  P    P        PPT     +
Sbjct: 459 ---APTKPTYETEKPLKPAPVAPNYEKEPT-PPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 17/92 (18%), Positives = 25/92 (27%)

Query: 47  PSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPP 106
            +       P       P                   ++    PKV    P PPV    P
Sbjct: 401 GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAP 460

Query: 107 PPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKT 138
                 T  P+  +P  P   + P PP + + 
Sbjct: 461 TKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 18/84 (21%), Positives = 21/84 (25%), Gaps = 10/84 (11%)

Query: 28  SKPTPPPPSSPNCPPPPHS--------PSPKPPPRPPKVKPTPP--PPAVKPPPPPKVKT 77
               P  P   N      +              P+  K KPTPP  P A   P     K 
Sbjct: 411 VSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKP 470

Query: 78  TPPPPVVKPPPPPKVKPSTPPPPV 101
             P PV          P+      
Sbjct: 471 LKPAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 21/95 (22%), Gaps = 4/95 (4%)

Query: 44  PHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVK 103
              P+              P   +   P         P +           + P     K
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450

Query: 104 PPPPPK----EKPTPPPVVKSPPTPPNVRYPPPPK 134
           P PP K     KPT        P P    Y   P 
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPT 485

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 12/81 (14%), Positives = 14/81 (17%)

Query: 60  PTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVK 119
                  V P     V         K P              V      K  P   P   
Sbjct: 401 GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAP 460

Query: 120 SPPTPPNVRYPPPPKQQKTCP 140
           + PT    +   P        
Sbjct: 461 TKPTYETEKPLKPAPVAPNYE 481

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 16/101 (15%), Positives = 20/101 (19%)

Query: 35  PSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKP 94
             +PN      +     P     V  T     +     P V         KP     +  
Sbjct: 377 SDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG 436

Query: 95  STPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQ 135
                 V K        P  P     P         P P  
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVA 477

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.1 bits (137), Expect = 6e-10
 Identities = 22/119 (18%), Positives = 28/119 (23%), Gaps = 8/119 (6%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPP-------PRPPKVKPTPPPPAV-KPPPPPKVKTTPPP 81
            +   P   +   P  S +           P      P PPPP       PP   T    
Sbjct: 11  SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70

Query: 82  PVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
                  P     ++  P V     P  E P   P       P    +P P        
Sbjct: 71  LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 17/102 (16%), Positives = 20/102 (19%), Gaps = 7/102 (6%)

Query: 41  PPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPP- 99
               H  S   P     V P+    +        +      P   PPPPP      PP  
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 100 ------PVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQ 135
                        P     T           P    P     
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPP 106

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 12/89 (13%), Positives = 17/89 (19%)

Query: 29  KPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPP 88
              P P   P   P   +P           +    P                 P  + P 
Sbjct: 43  VTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPA 102

Query: 89  PPKVKPSTPPPPVVKPPPPPKEKPTPPPV 117
                     P +   P P  +      V
Sbjct: 103 SAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 57.3 bits (138), Expect = 8e-10
 Identities = 22/110 (20%), Positives = 29/110 (26%), Gaps = 8/110 (7%)

Query: 35  PSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKP 94
           P++P  P  P   +           P PP     P   PK K    P    PP P     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 95  STPPPPVVKPPPPPKEKPT----PPPVVKSPPTPPNVRYPPPPKQQKTCP 140
           +               K         V   P     V++  P    + CP
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQP----RRCP 107

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 13/79 (16%), Positives = 18/79 (22%), Gaps = 1/79 (1%)

Query: 59  KPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVV 118
            P  P     P      +     P    PP     P+  P P      P    P  P   
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKK-NKKPKNPTPPRPAGD 59

Query: 119 KSPPTPPNVRYPPPPKQQK 137
            +     +       +  K
Sbjct: 60  NATVAAGHATLREHLRDIK 78

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 7/95 (7%)

Query: 28  SKPTPPPPSSPNCPPPPHSPS--PKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPP---- 81
           ++     P++P  P    +P+  PKP        PTPP PA           T       
Sbjct: 17  TQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRD 76

Query: 82  -PVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP 115
                      V P      VV+   P +    P 
Sbjct: 77  IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPE 111

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 18/75 (24%)

Query: 81  PPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
           P     P       +    P    PP     PT  P  K    P N   P P     T  
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 141 INALKLSACVDVLGG 155
                L   +  +  
Sbjct: 65  AGHATLREHLRDIKA 79

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 18/79 (22%), Gaps = 1/79 (1%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
            T      P  P PP +    P   P   K   P     P P     T            
Sbjct: 16  ATQAANGGPATPAPP-ALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHL 74

Query: 90  PKVKPSTPPPPVVKPPPPP 108
             +K           PPP 
Sbjct: 75  RDIKAENTDANFYVCPPPT 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 55.6 bits (133), Expect = 3e-09
 Identities = 17/107 (15%), Positives = 26/107 (24%), Gaps = 2/107 (1%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P        N   P   P+   PP+ P          +  PP   V +      + P   
Sbjct: 10  PQAQLQYGQN-ATPLQQPAQFMPPQDP-AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
              +        +            P     P  P  +  P   +QQ
Sbjct: 68  QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQ 114

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.1 bits (129), Expect = 9e-09
 Identities = 16/111 (14%), Positives = 23/111 (20%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                 ++P   P    P   P            PP    P   + +   P         
Sbjct: 14  LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
            +   S     +   P         P V     TP   +  P        P
Sbjct: 74  DQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 19/115 (16%), Positives = 26/115 (22%), Gaps = 3/115 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
               PP  P      +     PP       P+        P   ++              
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAV---PSMGQQQFLTPAQEQLHQQIDQATTSMNDM 83

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINAL 144
                    P     P  P +  TP    + P   P    P     Q   P+N L
Sbjct: 84  HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 13/115 (11%), Positives = 21/115 (18%), Gaps = 4/115 (3%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                      PP    PS          +        +                 P   
Sbjct: 37  AAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM----NDMHLHNVPLVD 92

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINAL 144
           P        P  +  P   +++P   P    P         P  +      +  L
Sbjct: 93  PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTEL 147

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 14/112 (12%), Positives = 21/112 (18%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
            +      P     P     +      +        A        +   P         P
Sbjct: 40  MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPI 141
                   P    + P        P   +     P N  YP     +   PI
Sbjct: 100 QVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPI 151

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 18/104 (17%), Positives = 25/104 (24%), Gaps = 3/104 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                P+           +           P   P A   P  P    TP     +P   
Sbjct: 59  QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
           P       P   +     P  +  P  ++   P P      PPP
Sbjct: 119 P---AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPP 159

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 14/116 (12%), Positives = 22/116 (18%), Gaps = 3/116 (2%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
              P         P      +   +            V    P        P  +  P  
Sbjct: 51  GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

Query: 90  PKVKPSTPPP---PVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPIN 142
            + +P   P    P        +      P+      PP +     P      P  
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 166

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.6 bits (107), Expect = 5e-06
 Identities = 10/118 (8%), Positives = 20/118 (16%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
                                P   P        P  +  P   + +    P   +P   
Sbjct: 68  QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLS 147
                                 P     +  PP          P +      + ++ +
Sbjct: 128 MGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 14/99 (14%), Positives = 21/99 (21%), Gaps = 1/99 (1%)

Query: 36  SSPNCPPPPHSPSPKPPPRPPKVKPTP-PPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKP 94
           S       P +         P  +P    PP               PP    P   + + 
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 95  STPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
            TP    +               + + P      Y  P 
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 11/94 (11%), Positives = 19/94 (20%)

Query: 43  PPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVV 102
                 P+   +  +       PA   PP            +  PP   V        + 
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 103 KPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
                  ++        +     NV    P    
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 9/95 (9%), Positives = 13/95 (13%)

Query: 42  PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPV 101
                             P   P    PP  P         +  PP              
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 102 VKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
                  ++       +            P    Q
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 12/102 (11%), Positives = 21/102 (20%)

Query: 32  PPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPK 91
                    P P  S    P      V        V        +      +V     P 
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPL 388

Query: 92  VKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
           V P+     V++     +   T   +  +     +       
Sbjct: 389 VDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFS 430

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 15/101 (14%), Positives = 20/101 (19%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
             P P  S    P   +           V       A K      V     P V      
Sbjct: 336 GVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDVA 395

Query: 90  PKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYP 130
             V  +T     V+     +                +V  P
Sbjct: 396 ASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELP 436

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 22/120 (18%), Positives = 30/120 (25%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           S       +SP       +PS  P   P    P      +     P     PP  V+  P
Sbjct: 17  STQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSP 76

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLS 147
             P        P +      P+      PV  S    P +      K       N    +
Sbjct: 77  MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 20/120 (16%), Positives = 30/120 (25%)

Query: 14  LNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPP 73
           +NS     +     + P+  P   P    P    SP      P     PP   +  P  P
Sbjct: 20  VNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGP 79

Query: 74  KVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
              + P  P +          S   P        P         V + P+     +    
Sbjct: 80  HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 14/102 (13%), Positives = 22/102 (21%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
            +P PPPPS+ +    P S +              P              +     VK  
Sbjct: 29  PQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQT 88

Query: 88  PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRY 129
                   +                    +V   P     +Y
Sbjct: 89  TAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKY 130

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 13/117 (11%), Positives = 24/117 (20%), Gaps = 2/117 (1%)

Query: 7   TSFLIVLLNSGALLSSLACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPA 66
           +++L   L+    +++        T      P  PPP  +     P             A
Sbjct: 2   SNYLRRRLSDSNFMAN--LPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAA 59

Query: 67  VKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPT 123
               P      +             VK +T                       +   
Sbjct: 60  PVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 15/96 (15%), Gaps = 2/96 (2%)

Query: 38  PNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTP 97
           PN           PPP P    P   P +            P      P P         
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 98  PP--PVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPP 131
                 VK             V              
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 12/103 (11%), Positives = 17/103 (16%), Gaps = 3/103 (2%)

Query: 37  SPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPST 96
             N P    +   +P P PP   P         P                  P    P +
Sbjct: 15  MANLPNGYMTDLQRPQPPPP---PPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71

Query: 97  PPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTC 139
                         K T      +             +     
Sbjct: 72  SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 2/96 (2%)

Query: 44  PHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVK 103
           P         RP  V+   P P    PP  +   +    +V       ++P         
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA-- 62

Query: 104 PPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTC 139
              P K  P  P   + P  P   +   P K+ + C
Sbjct: 63  QKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNC 98

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 3/100 (3%)

Query: 41  PPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPP 100
                 P+P     P    P PP     P    ++        ++P    K     P   
Sbjct: 10  YGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKK- 68

Query: 101 VVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCP 140
              PPP PK+   P    +   + P  R     K +  C 
Sbjct: 69  --TPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCI 106

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 15/81 (18%), Positives = 20/81 (24%), Gaps = 5/81 (6%)

Query: 37  SPNCPPPPHSPSPKPPPRPPK--VKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKP 94
           +    PP             K    P  P P   P               +    P  + 
Sbjct: 6   TCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRA 65

Query: 95  STPPPPVVKPPPPPKEKPTPP 115
             P  P   P PP + + TP 
Sbjct: 66  EVPTKP---PLPPARTQGTPV 83

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 4/76 (5%)

Query: 63  PPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPP 122
            PP+       + + T        P P      T          P +    P    + P 
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69

Query: 123 TPPNVRYPPPPKQQKT 138
            PP     PP + Q T
Sbjct: 70  KPP----LPPARTQGT 81

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 12/84 (14%), Positives = 17/84 (20%), Gaps = 5/84 (5%)

Query: 54  RPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPT 113
            PP           +     +     P P   P             P      P +    
Sbjct: 10  DPPSQDLKDGTQ--EEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEV 67

Query: 114 PPPVVKSPPTPPNVRYPPPPKQQK 137
           P    K P  P   +  P     +
Sbjct: 68  PT---KPPLPPARTQGTPVHLNYR 88

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 12/72 (16%), Positives = 16/72 (22%)

Query: 30  PTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPP 89
           P+                +P  P      + T          P +    P      P  P
Sbjct: 12  PSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPTKP 71

Query: 90  PKVKPSTPPPPV 101
           P     T   PV
Sbjct: 72  PLPPARTQGTPV 83

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 4/89 (4%)

Query: 40  CPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPP 99
                  P  +      + + T    A   P P      P   V+               
Sbjct: 4   LLTCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEG---DPQRTVISWRGAVIEPEQGTEL 60

Query: 100 PVVKPPPPPKEKPTPPPVVKSPPTPPNVR 128
           P  +   P K  P PP   +  P   N R
Sbjct: 61  PSRRAEVPTK-PPLPPARTQGTPVHLNYR 88

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 30   PTPPP--PSSPNCPP--PPHSP-SPKPPPRPPKVKPTPPP-----PAVKPPPPPKVKTTP 79
            PT P   P+SP+     P +SP SP   P  P   PT P      P+  P  P    T+P
Sbjct: 1594 PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653

Query: 80   ---PPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEK---PTPPPVVKSPPTPPNVRYPPPP 133
               P      P  P   P++P      P   P      PT P    + P+      P  P
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSP 1709

Query: 134  KQQKTCP 140
                T P
Sbjct: 1710 SYSPTSP 1716

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 30   PTPPP--PSSPNCPPPPHSPSPKPPPRPP-KVKPTPPPPAVKPPPPPKVKTTPPPPVVKP 86
            PT P   P+SP+  P   S SP  P   P     +P  P+  P  P    T+P      P
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688

Query: 87   ---PPPPKVKPSTP---PPPVVKPPPPPKEKPTPPPVVKSPP--TPPNVRYPP 131
               P  P   P++P   P      P  P   PT P    + P  +P +  Y P
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 17/120 (14%), Positives = 25/120 (20%)

Query: 31  TPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPP 90
                  P   P       +     P          ++                   P P
Sbjct: 6   FNMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRP 65

Query: 91  KVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALKLSACV 150
           +  P        +PP P K KP      +   T P  R     K +     +       V
Sbjct: 66  RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDV 125

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 18/146 (12%), Positives = 36/146 (24%)

Query: 26  DCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVK 85
             + P     +     P   +P+        + +P   P   +  PP + +       V 
Sbjct: 19  RIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVS 78

Query: 86  PPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINALK 145
            P  P+       P   +           PP + S      +       Q+       ++
Sbjct: 79  SPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVR 138

Query: 146 LSACVDVLGGLIQIGLGDSAKEKCCP 171
                    G       +   E+ C 
Sbjct: 139 ALKASAQDAGESCTPEAEGRPEEPCG 164

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 15/105 (14%), Positives = 22/105 (20%)

Query: 33  PPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKV 92
             P  P   PP  +     P RP    P       +    P                 ++
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 93  KPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQK 137
                  P     P     P+P   +K               Q +
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQ 117

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 4/130 (3%)

Query: 28  SKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVK-- 85
           ++  P PP          +PSP  P        T        PP    +    PP  +  
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 86  --PPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQKTCPINA 143
                      +   P +   P P ++     P    PP   + +      +  +C   A
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 144 LKLSACVDVL 153
            +L A V  L
Sbjct: 131 RELGARVRAL 140

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 16/114 (14%), Positives = 26/114 (22%)

Query: 24  ACDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPV 83
           AC    P  P   +P           +PP  P + +  PP          +V +   P  
Sbjct: 26  ACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEA 85

Query: 84  VKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQK 137
              P  P               PP          +    +          + + 
Sbjct: 86  PDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRA 139

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 11/60 (18%), Positives = 14/60 (23%)

Query: 59  KPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVV 118
              P     +P P         P      P        P P    P  P ++ P     V
Sbjct: 91  DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 6/92 (6%)

Query: 78  TPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQK 137
              P   +P P P    S    P   P  P      P P   S      V+  P      
Sbjct: 91  DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150

Query: 138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKC 169
              + A KL   +       +I    + K+  
Sbjct: 151 IRALVAQKLKKELT------EIPPSKAIKDLV 176

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 12/56 (21%), Positives = 16/56 (28%)

Query: 55  PPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKE 110
           P + +P P P A              P      P P    + P  PV   P    +
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATD 149

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 10/57 (17%), Positives = 10/57 (17%)

Query: 27  CSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPV 83
                P        P    S    P   P         PA  P            PV
Sbjct: 89  YYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPV 145

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 2/58 (3%)

Query: 26  DCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPV 83
           +  +  P P  +          +    P  P   P P P +    P   V+  P    
Sbjct: 93  EPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPAS--AGPAAPVQDAPVTAT 148

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 13/49 (26%)

Query: 77  TTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPP 125
           +      V   P     P+ P     KP  P    P+       P   P
Sbjct: 301 SNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 60  PTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPP 105
              P   V P  P +       P+   P  P  +    PP  VK P
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPP--VKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 74  KVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP 115
                P  PV    P   +  +  P       P  + +PTPP
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPP 345

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 37  SPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
           +   P  P +P+    P     KP  P P     P  + + TPP   VK P
Sbjct: 305 AIGVPTKPVAPTAPTQPMYETEKPLEPAP---VAPSYENEPTPP---VKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 11/42 (26%), Positives = 14/42 (33%)

Query: 94  PSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQ 135
              P  PV    P      T  P+  +P  P     P PP +
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVK 347

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 12/47 (25%), Positives = 12/47 (25%)

Query: 61  TPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPP 107
                    P  P   T P     KP  P  V PS    P      P
Sbjct: 303 INAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 11/83 (13%), Positives = 16/83 (19%), Gaps = 1/83 (1%)

Query: 27  CSKPTPPPPSSPNCP-PPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVK 85
            +K  P   S       P  +         P  +    P +      P     P     K
Sbjct: 2   SNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPK 61

Query: 86  PPPPPKVKPSTPPPPVVKPPPPP 108
                    +   P    P    
Sbjct: 62  LFGGFNSSDTVTSPQRAGPLAGG 84

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/92 (14%), Positives = 18/92 (19%), Gaps = 8/92 (8%)

Query: 25  CDCSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVV 84
            + SKP        +  P  +         P    P+ P  A     P        P   
Sbjct: 2   SNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPS---AAFAPAAA 58

Query: 85  KPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPP 116
           +P        S          P          
Sbjct: 59  EPKLFGGFNSSDTVTS-----PQRAGPLAGGV 85

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 512

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 22/92 (23%)

Query: 45  HSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKP 104
           H+ S          +      +  P   P+ + +       P                K 
Sbjct: 217 HTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKE 276

Query: 105 PPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQ 136
               +E+ T  P   S   P  V    P  Q 
Sbjct: 277 KEEQEERETKTPECPSHTQPLGVYLLTPAVQD 308

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 10/56 (17%), Positives = 16/56 (28%)

Query: 55  PPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKE 110
           P ++     P   + P P    + P P    P P     P+     +   P     
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASL 149

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 78  TPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPPKQQK 137
           TP P  +     P  + +  P P    P P    P P            +   P      
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLL 150

Query: 138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKC 169
              + A KL   +D       I +  + K+  
Sbjct: 151 LHVLVAHKLKKSLD------SIPMSKTIKDLV 176

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 10/60 (16%), Positives = 15/60 (25%)

Query: 59  KPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPPPVV 118
            P P   A K  P  +    P P    P P                     ++P    ++
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLL 150

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 12/57 (21%), Positives = 16/57 (28%)

Query: 27  CSKPTPPPPSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPV 83
              P P   ++   P    +P+P P    P      P P     P          PV
Sbjct: 89  YYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPV 145

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 34   PPSSPNCPP--PPHSP-SPKPPPRPPKVKPTPPP-----PAVKPPPPPKVKTTPPPPVVK 85
             P+SP+  P  P +SP SP   P  P   PT P      P+  P  P    T+P      
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644

Query: 86   PPPPPKVKPSTPPPPVVKP------PPPPKEKPTPPPVVKS----PPTPPNVRYPPPPKQ 135
            P   P     +P  P   P      P  P   PT P    +     PT PN   P  P  
Sbjct: 1645 PSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSY 1703

Query: 136  QKTCP 140
              T P
Sbjct: 1704 SPTSP 1708

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 28/106 (26%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 30   PTPPP--PSSPNCPPPPHSPSPKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPP 87
            PT P   P+SP+  P   S SP  P   P      P      P  P    T P      P
Sbjct: 1558 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---P 1614

Query: 88   PPPKVKPSTPPPPVVKPPPPPKEKPTPPPVVKSPPTPPNVRYPPPP 133
              P   P++P      P   P      P      PT P+     P 
Sbjct: 1615 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1660

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 49  PKPPPRPPKVKPTPPPPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPP--- 105
           P    +    +              + +  PPP +  PP P   +PS       + P   
Sbjct: 3   PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFV 62

Query: 106 PPPKEKPTPPPVVKSPPTPPNVRYPP 131
               E   PP  +  P       Y P
Sbjct: 63  DTAVEGTLPPLSLLDPAEVKQKSYSP 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.95
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	96.78
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	96.59
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	95.83
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	95.46
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	94.87
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	94.37
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	93.95
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	93.45
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	92.46

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.95  E-value=2.4e-29  Score=190.51  Aligned_cols=75  Identities=41%  Similarity=0.978  Sum_probs=67.1

Q ss_pred             CCCCCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCC
Q 040356          136 QKTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKY  215 (226)
Q Consensus       136 ~~~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~  215 (226)
                      +++||    |||+|+|||||++    |  ++++||++|+||+|+|||+|||||||  +|| | +|||++|++|+|.|||+
T Consensus         5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lg-i-lnlpv~L~llln~Cgk~   70 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALG-I-LNLNRNLQLILNSCGRS   70 (80)
T ss_dssp             -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHT-C-SCHHHHHHHHHHHTTCS
T ss_pred             CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccc-e-eecChhHHHHHHHhCCc
Confidence            35799    8999999998653    2  56789999999999999999999999  489 6 88899999999999999


Q ss_pred             CCCCCcCCC
Q 040356          216 PPAGFQCPP  224 (226)
Q Consensus       216 vP~GF~C~~  224 (226)
                      +|+||+|+.
T Consensus        71 ~P~gF~C~~   79 (80)
T 1hyp_A           71 YPSNATCPR   79 (80)
T ss_dssp             SCCCCCCSC
T ss_pred             CcCCCCCCC
Confidence            999999975

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=96.78  E-value=0.00013  Score=51.90  Aligned_cols=61  Identities=20%  Similarity=0.437  Sum_probs=45.6

Q ss_pred             cCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCC
Q 040356          144 LKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPP  217 (226)
Q Consensus       144 LKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP  217 (226)
                      .+|..|...+.      -|..+..+||.-|++     +..|||..+|.-.++ ..||...+.+ |...||..+|
T Consensus         5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSPHARD-TLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCHHHHH-HHHHHTSCCS
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence            46778887663      234567789999984     489999999976666 4566666776 6679999887

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=96.59  E-value=0.00013  Score=52.24  Aligned_cols=61  Identities=21%  Similarity=0.436  Sum_probs=45.2

Q ss_pred             cCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCC
Q 040356          144 LKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPP  217 (226)
Q Consensus       144 LKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP  217 (226)
                      .+|..|...+.      -|..+..+||.-|++     +..|||..+|...++ ..||...+.+ |...||..+|
T Consensus         6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSPNARK-AVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTTTGGG-CCCCCSSCSC
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence            35678887663      234567789999984     489999999876555 4566666776 6789999886

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=95.83  E-value=0.001  Score=47.96  Aligned_cols=69  Identities=20%  Similarity=0.430  Sum_probs=47.0

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhh---ccCceeccccchhhHHhhhhcC
Q 040356          137 KTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRI---KAPNLINLLVPISLQVLVNDCG  213 (226)
Q Consensus       137 ~~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKA---nvLGlInlniPi~L~lLLN~CG  213 (226)
                      ..|-.+..+|..|...+.+    +-+..+...||.-|++ +|   ..|||..++.   +-+| ||  ...+++ |...||
T Consensus         3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~g-in--~~~A~~-LP~~Cg   70 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFG-VD--PELASA-LPKQCG   70 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHT-BC--HHHHHH-HHHHTT
T ss_pred             chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcC-cC--HHHHHH-HHHHcC
Confidence            4677777788888877632    1113466789999998 33   4899998883   3334 44  445665 678999


Q ss_pred             CCCC
Q 040356          214 KYPP  217 (226)
Q Consensus       214 K~vP  217 (226)
                      ..+|
T Consensus        71 v~~p   74 (77)
T 2rkn_A           71 LANA   74 (77)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            9876

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=95.46  E-value=0.0014  Score=48.86  Aligned_cols=77  Identities=23%  Similarity=0.517  Sum_probs=49.5

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhcCCccc-----c-cchhhhHHhhhccCcee-ccccchhhHHhhhh
Q 040356          139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDL-----D-AAICLCTAIRIKAPNLI-NLLVPISLQVLVND  211 (226)
Q Consensus       139 CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDl-----d-AAvCLCtAIKAnvLGlI-nlniPi~L~lLLN~  211 (226)
                      |-....+|..|.+.+.|      |..+...||.-|++|.+.     | .+.|||.  |..+-+ + .||...+++ |...
T Consensus         3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~~A~~-LP~~   72 (91)
T 1siy_A            3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPNNAEA-LPGK   72 (91)
T ss_dssp             TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHHHHHH-HHHH
T ss_pred             HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHHHHHH-HHHH
Confidence            55555677778877632      223667899999988543     3 2689997  433222 2 345445665 7789


Q ss_pred             cCCCCC----CCCcCCCC
Q 040356          212 CGKYPP----AGFQCPPI  225 (226)
Q Consensus       212 CGK~vP----~GF~C~~~  225 (226)
                      ||..+|    ..|.|..+
T Consensus        73 Cgv~~p~~is~~~dC~~v   90 (91)
T 1siy_A           73 CGVNIPYKISTSTNCNSI   90 (91)
T ss_dssp             HTCCCSSCSCTTSCSSTT
T ss_pred             cCCCCCCCCCCCCCCccC
Confidence            999866    46777655

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=94.87  E-value=0.0016  Score=49.22  Aligned_cols=76  Identities=22%  Similarity=0.466  Sum_probs=49.0

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhcCCcccc----cchhhhHHhhhccCceeccccchhhHHhhhhcCCCCC-
Q 040356          143 ALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLD----AAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPP-  217 (226)
Q Consensus       143 aLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDld----AAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP-  217 (226)
                      ...|.-|.+.+.|      |..+..+||.-+++|.+.-    +..|+|..||....++..||...+.. |-..||-++| 
T Consensus         8 ~~~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~-LP~~CgV~~p~   80 (93)
T 2ljo_A            8 TSDLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAA-LPGKCGVNIPY   80 (93)
T ss_dssp             HHHHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHH-HHHHHTCCCSS
T ss_pred             HHHHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHh-hhHhcCCCCCC
Confidence            3445556655431      2235668999888886542    34799999986543333455545554 7789999988 


Q ss_pred             ---CCCcCCCC
Q 040356          218 ---AGFQCPPI  225 (226)
Q Consensus       218 ---~GF~C~~~  225 (226)
                         ..+.|..+
T Consensus        81 ~Is~~~dC~~v   91 (93)
T 2ljo_A           81 KISTTTNCNTV   91 (93)
T ss_dssp             CCSTTCCGGGC
T ss_pred             CCCCCCCCCCC
Confidence               67778654

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=94.37  E-value=0.0015  Score=48.71  Aligned_cols=78  Identities=23%  Similarity=0.484  Sum_probs=50.4

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhcCCccc-----c-cchhhhHHhhhccCceeccccchhhHHhhhhc
Q 040356          139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDL-----D-AAICLCTAIRIKAPNLINLLVPISLQVLVNDC  212 (226)
Q Consensus       139 CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDl-----d-AAvCLCtAIKAnvLGlInlniPi~L~lLLN~C  212 (226)
                      |-....+|..|.+.+.|      |..+...||.-|++|.+.     | .+.|||....+.-++  .||...+++ |...|
T Consensus         4 C~~v~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~~A~~-LP~~C   74 (92)
T 2alg_A            4 CGQVSSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPNNAAA-LPGKC   74 (92)
T ss_dssp             HHHHHHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHHHHHH-HHHHT
T ss_pred             hHHHHHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChHHHHH-HHHHc
Confidence            43445567888877642      223556899999987632     2 268999977666663  344445665 77899


Q ss_pred             CCCCC----CCCcCCCC
Q 040356          213 GKYPP----AGFQCPPI  225 (226)
Q Consensus       213 GK~vP----~GF~C~~~  225 (226)
                      |-.+|    ..|.|..+
T Consensus        75 gv~~p~~is~~~dC~~v   91 (92)
T 2alg_A           75 GVSIPYKISASTNCATV   91 (92)
T ss_dssp             TCCCSSCSSTTSCGGGC
T ss_pred             CCCCCCCCCCCCCCccC
Confidence            99876    45666544

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=93.95  E-value=0.0018  Score=48.26  Aligned_cols=73  Identities=19%  Similarity=0.415  Sum_probs=45.0

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhcCCcccc------cchhhhHHhhhccCceeccccchhhHHhhhhcCCC
Q 040356          142 NALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLD------AAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKY  215 (226)
Q Consensus       142 DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDld------AAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~  215 (226)
                      ...+|..|.+.+.|      |..+..+||.-+++|.+.-      .+.|||..-.++-++  .||...+++ |...||-.
T Consensus         6 v~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~-LP~~C~v~   76 (90)
T 1bwo_A            6 VDSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH--NLNEDNARS-IPPKCGVN   76 (90)
T ss_dssp             HHHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT--TCCHHHHHT-HHHHHTCC
T ss_pred             HHHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC--CcCHHHHHH-HHHHcCCC
Confidence            34567788877642      2236668999999876321      268999533333332  344445665 67899998


Q ss_pred             CC----CCCcCC
Q 040356          216 PP----AGFQCP  223 (226)
Q Consensus       216 vP----~GF~C~  223 (226)
                      +|    ..+.|.
T Consensus        77 ~p~~is~~~dC~   88 (90)
T 1bwo_A           77 LPYTISLNIDCS   88 (90)
T ss_dssp             CSSCCCTTCCGG
T ss_pred             CCCCCCCCCCCC
Confidence            66    355554

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=93.45  E-value=0.006  Score=45.55  Aligned_cols=80  Identities=21%  Similarity=0.456  Sum_probs=50.8

Q ss_pred             CCCccccCccccccccccccccccCCCCCCCCchhhcCCccc---cc---chhhhHHhhhccCceeccccchhhHHhhhh
Q 040356          138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDL---DA---AICLCTAIRIKAPNLINLLVPISLQVLVND  211 (226)
Q Consensus       138 ~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDl---dA---AvCLCtAIKAnvLGlInlniPi~L~lLLN~  211 (226)
                      .|-....+|.-|.+.+.|     -+..+...||.-|++|.+.   .+   +.|||....++-++-||.  ..+++ |-..
T Consensus         3 ~C~~v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~--~~A~~-LP~~   74 (93)
T 1afh_A            3 SCGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNA--GNAAS-IPSK   74 (93)
T ss_dssp             SSHHHHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCH--HHHHH-HHHH
T ss_pred             ChHHHHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCH--HHHHH-HHHH
Confidence            355456678888877642     1233555799999988532   21   689998655554421444  45665 7789


Q ss_pred             cCCCCC----CCCcCCCC
Q 040356          212 CGKYPP----AGFQCPPI  225 (226)
Q Consensus       212 CGK~vP----~GF~C~~~  225 (226)
                      ||-.++    ..|.|..+
T Consensus        75 C~v~~p~~is~~~dC~~v   92 (93)
T 1afh_A           75 CGVSIPYTISTSTDCSRV   92 (93)
T ss_dssp             HHCCCSSCCSTTCCSSSC
T ss_pred             cCCCCCCCCCCCCCCccC
Confidence            998765    46777654

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=92.46  E-value=0.014  Score=43.50  Aligned_cols=77  Identities=22%  Similarity=0.462  Sum_probs=48.2

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhcCCcccc------cchhhhHHhhhccCceeccccchhhHHhhhhc
Q 040356          139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLD------AAICLCTAIRIKAPNLINLLVPISLQVLVNDC  212 (226)
Q Consensus       139 CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDld------AAvCLCtAIKAnvLGlInlniPi~L~lLLN~C  212 (226)
                      |-....+|.-|.+.+.|     -+. +. .||.-|++|.+.-      .+.|||..--++-++  .||...++. |-..|
T Consensus         4 C~~v~~~L~pCl~y~~~-----~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~-LP~~C   73 (91)
T 1t12_A            4 CGQVTSNLAPCLAYLRN-----TGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS--GINLGKAAG-LPSTC   73 (91)
T ss_dssp             HHHHHHHTHHHHHHHTT-----SSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT--TCCHHHHHH-HHHHT
T ss_pred             hHHHHHhccCcHHHHcC-----CCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC--CcChhHHHH-HHHHc
Confidence            44445567778877642     223 55 8999999886431      269999633234442  334335665 77899


Q ss_pred             CCCCC----CCCcCCCC
Q 040356          213 GKYPP----AGFQCPPI  225 (226)
Q Consensus       213 GK~vP----~GF~C~~~  225 (226)
                      |-.++    ..|.|..+
T Consensus        74 ~v~~p~~is~~~dC~~v   90 (91)
T 1t12_A           74 GVNIPYKISPSTDCSKV   90 (91)
T ss_dssp             TCCCSSCSSSSSCCTTC
T ss_pred             CCCCCCCCCCCCCCccC
Confidence            99866    46677654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	3e-21
d1jmma_	377	b.30.6.1 (A:) V-region of surface antigen I/II (SA	0.001

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 82.1 bits (203), Expect = 3e-21
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLI 197
           +CP     LS C+++LGG +         + CC L+ GL D++A +CLC  +R     L 
Sbjct: 2   SCP----DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRA----LG 47

Query: 198 NLLVPISLQVLVNDCGKYPPAGFQCP 223
            L +  +LQ+++N CG+  P+   CP
Sbjct: 48  ILNLNRNLQLILNSCGRSYPSNATCP 73

>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]} Length = 377

class: All beta proteins
fold: Supersandwich
superfamily: V-region of surface antigen I/II (SA I/II, PAC)
family: V-region of surface antigen I/II (SA I/II, PAC)
domain: V-region of surface antigen I/II (SA I/II, PAC)
species: Streptococcus mutans [TaxId: 1309]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 7/52 (13%)

Query: 64  PPAVKPPPPPKVKTTPPPPVVKPPPPPKVKPSTPPPPVVKPPPPPKEKPTPP 115
           P +  P  P K  T    P +      K+         V  P   KEKPTPP
Sbjct: 332 PVSDMPVVPGKDNTDGKKPNIWYSLNGKI-------RAVNVPKVTKEKPTPP 376

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.95
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	95.62
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	94.26
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	94.0
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	92.53

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.95  E-value=1.2e-29  Score=188.58  Aligned_cols=74  Identities=39%  Similarity=0.938  Sum_probs=66.1

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCC
Q 040356          137 KTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYP  216 (226)
Q Consensus       137 ~~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~v  216 (226)
                      .+||    |||+|+|||||+++      ..++||++|+||+|+|||+||||||||++   | +||||+|++|+|.|||++
T Consensus         1 PtCP----Klg~C~nvLg~~~~------~~~~CC~Ll~GL~dleAAvCLCtaika~~---l-lnvpv~l~llln~Cgk~~   66 (75)
T d1hypa_           1 PSCP----DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRALG---I-LNLNRNLQLILNSCGRSY   66 (75)
T ss_dssp             CCSC----CCGGGGGGGGTCCT------THHHHHHHHHTSCHHHHHHHHHHHHHHHT---C-SCHHHHHHHHHHHTTCSS
T ss_pred             CCCC----chhhHHHHhcCccC------CCCCcchHHhhHHHHHHHHHHHHHHHHhh---h-ccccchHHHHHHHcCCcC
Confidence            3799    89999999997753      45789999999999999999999999954   3 678899999999999999


Q ss_pred             CCCCcCCC
Q 040356          217 PAGFQCPP  224 (226)
Q Consensus       217 P~GF~C~~  224 (226)
                      |+||+|++
T Consensus        67 P~gF~CP~   74 (75)
T d1hypa_          67 PSNATCPR   74 (75)
T ss_dssp             CCCCCCSC
T ss_pred             cCCCcCCC
Confidence            99999986

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.62  E-value=0.00019  Score=52.21  Aligned_cols=82  Identities=20%  Similarity=0.432  Sum_probs=53.9

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhcCCccc----ccchhhhHHhhhccCceeccccchhhHHhhhhcCC
Q 040356          139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDL----DAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGK  214 (226)
Q Consensus       139 CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDl----dAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK  214 (226)
                      |-....+|.-|.+.|.|     -+.-+...||.-+++|.++    +...|+|..||...-+...||.-. +..|-..||-
T Consensus         4 C~~v~~~l~pCl~Yltg-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~r-a~~LP~~C~v   77 (93)
T d1fk5a_           4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGN-AASIPSKCGV   77 (93)
T ss_dssp             HHHHHHHHGGGHHHHTT-----CSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHH-HHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHhC-----CCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHH-HHhhhHhcCC
Confidence            44345567778877643     2333567899999988764    335688888886543322344333 4457789999


Q ss_pred             CCC----CCCcCCCCC
Q 040356          215 YPP----AGFQCPPIN  226 (226)
Q Consensus       215 ~vP----~GF~C~~~~  226 (226)
                      +++    ..|.|..++
T Consensus        78 ~l~~pis~~~dCs~i~   93 (93)
T d1fk5a_          78 SIPYTISTSTDCSRVN   93 (93)
T ss_dssp             CCSSCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCCCCcCC
Confidence            887    688887764

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=94.26  E-value=0.00075  Score=48.82  Aligned_cols=76  Identities=20%  Similarity=0.449  Sum_probs=51.2

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhcCCccc----ccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCC-
Q 040356          143 ALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDL----DAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPP-  217 (226)
Q Consensus       143 aLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDl----dAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP-  217 (226)
                      ..+|.-|.+.|.|      |..+..+||.-+++|.+.    ++..|||..||....+...||...+. .|-..||-+++ 
T Consensus         7 ~~~l~pCl~Yl~g------~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~-~LP~~C~v~~p~   79 (91)
T d1mida_           7 DSKMKPCLTYVQG------GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAA-SIPSKCNVNVPY   79 (91)
T ss_dssp             HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHH-HHHHHTTCCCCS
T ss_pred             HHHHHhhHHHHcC------CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHH-hchHhcCCCCCC
Confidence            4566777776642      234667899999988764    23579999998654232234444444 57789999988 


Q ss_pred             ---CCCcCCCC
Q 040356          218 ---AGFQCPPI  225 (226)
Q Consensus       218 ---~GF~C~~~  225 (226)
                         ..|.|..+
T Consensus        80 pis~~~dC~~i   90 (91)
T d1mida_          80 TISPDIDCSRI   90 (91)
T ss_dssp             CCCTTCCGGGC
T ss_pred             CCCCCCCCCCC
Confidence               78888765

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=94.00  E-value=0.0043  Score=43.85  Aligned_cols=64  Identities=20%  Similarity=0.422  Sum_probs=48.1

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCCC
Q 040356          142 NALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPA  218 (226)
Q Consensus       142 DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP~  218 (226)
                      |..+|..|+..+.      .|.+++..||+-++     |---|||.-+|.-.++ --|+=| +-+-+++.||..+|.
T Consensus         3 ~p~~L~~C~~Ai~------~g~~PS~~CC~kLk-----eQ~~ClC~Y~kdP~~~-~yv~sp-narkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAIL------SGAKPSGECCGNLR-----AQQGCFCQYAKDPTYG-QYIRSP-HARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHHH------HCCCCCHHHHHHHH-----HHGGGHHHHTTCTTTH-HHHTSH-HHHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHHh------cCCCCcHHHHHHHH-----hcCCccceecCCccHH-HHcCCH-HHHHHHHhcCCCCCC
Confidence            4567999998762      46678889999998     5678999999987776 334433 445578899998874

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.53  E-value=0.004  Score=44.19  Aligned_cols=64  Identities=23%  Similarity=0.457  Sum_probs=47.0

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCCC
Q 040356          142 NALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPA  218 (226)
Q Consensus       142 DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP~  218 (226)
                      |..+|..|+..+.      .|.+++..||+.++     |-.-|||.-+|.-.++ -.|+=| .-+-+++.||..+|.
T Consensus         4 ~p~~L~~C~~ai~------~g~~PS~~CC~kLk-----eQ~~ClC~Y~k~P~~~-~yv~sp-narkv~~aCgvp~P~   67 (69)
T d1l6ha_           4 NAGQLTVCTGAIA------GGARPTAACCSSLR-----AQQGCFCQFAKDPRYG-RYVNSP-NARKAVSSCGIALPT   67 (69)
T ss_dssp             TTTTHHHHHHHHT------TCCSTTHHHHHHHH-----HHHHHHHHHTTCSSHH-HHTTTT-TGGGCCCCCSSCSCC
T ss_pred             ChhhccccHHHHh------CCCCCcHHHHHHHH-----hcCCccceeccCccHH-HHcCCH-HHHHHHHhcCCCCCC
Confidence            4457889997652      45678889999998     5568999999977666 233323 455678899998874