Citrus Sinensis ID: 040362

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW
cccccccEEEEEEEEcccccccccccccEEEEEEcccccEEEccccCECccccccccccccccccccccEEEccccccccccccEEEEEEEEEEccccccccccccccccEEEcccccccccccEECccccccccccccEEEEEEEEEEEEEECccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccccccCEHHHccccccccEEEEEEcccccccccccccCEEEEEccccHHHHHccccccccccCEECcccccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHc
*SWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSY***********IASSALAAVLLMILLAFW
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHxx
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MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
COBRA-like protein 4 probableQ9LFW3
COBRA-like protein 6 Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.probableQ6Z4G7

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1EXG, chain A
Confidence level:probable
Coverage over the Query: 5-57,72-114
View the alignment between query and template
View the model in PyMOL