Citrus Sinensis ID: 040362

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW
Secondary Structure (PSIPRED)
cccccccEEEEEEEEcccccccccccccEEEEEEcccccEEEccccEEEccccccccccccccccccccEEEccccccccccccEEEEEEEEEEccccccccccccccccEEEcccccccccccEEEccccccccccccEEEEEEEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccccccEEHHHccccccccEEEEEEcccccccccccccEEEEEEccccHHHHHccccccccccEEEEcccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccccccccccEEEEEEcccEEEEEEccccEccccccHHcccccccccccccEEEEcccccccccccccccccEEEcccccccccEEEccccEEEEcccccccccccEEcccccccccccccEEEEEEEEEEEEEcccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEEcccccccEEEEEEccccccccccccccEEEEccHHHHHHHHHccccccccccccccccccEEEEccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSWTADGYVALVTINNIQMYRsimtpgwtlgwMWAKKEVIWSIVGaqatdqgdcskfknniphccrrnpvivdllpgvpmnqQFIYIVAKVLRVglsgtsnktvrlpknfyifgpgpgytcgaatimvptsffssngrrktYAMMTWTVTCTYsqtlasknpkccvslssfynpmitpcpscscgcgnenscviahntcpirvhWHVKANYKKHWLAKITITnfnnqrdftqwtlvfqhpnlknVTKVYRFLYkplnfyqplndtgMFYGIKYYNDLlmeagpygylqselilgkdkntftlekgrafpskvyvngdecmmlppdsypslpnsadagpiASSALAAVLLMILLAFW
Flexible Loop (DISEMBL)
MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSgtsnktvrlpKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW
Low Complexity Region (SEG)
MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITpcpscscgcgnenscVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPiassalaavllmillaFW
Disordered region (IsUnstruct)
**WTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMML****************IASSALAAVLLMILLAFW
Disordered Region (DISOPRED)
*SWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVG*********RLPKNFYIFGPGPGYTCGAATIM*********GRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAG*****QS**ILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSY*************SSALAAVLLMILLAFW
Disordered Region (DISEMBL)
MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW
Disordered Region (DISPRO)
*SWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYNPMITPCPSCSCGCGNENSCVIAHNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q9LFW3	431	COBRA-like protein 4 OS=A	yes	no	0.994	0.821	0.586	1e-133
Q6Z4G7	451	COBRA-like protein 6 OS=O	yes	no	0.994	0.784	0.531	1e-124
Q94KT8	456	Protein COBRA OS=Arabidop	no	no	0.938	0.732	0.545	1e-120
Q60E70	457	COBRA-like protein 3 OS=O	no	no	0.997	0.776	0.537	1e-120
Q6Z4G8	446	COBRA-like protein 1 OS=O	no	no	0.980	0.782	0.523	1e-118
Q9SRT7	452	COBRA-like protein 1 OS=A	no	no	0.991	0.780	0.517	1e-118
Q8L8Q7	441	COBRA-like protein 2 OS=A	no	no	0.983	0.793	0.529	1e-117
Q75IW1	458	COBRA-like protein 2 OS=O	no	no	0.994	0.772	0.517	1e-111
Q8W3E8	425	COBRA-like protein 4 OS=O	no	no	0.918	0.769	0.465	3e-92
Q7XR91	439	COBRA-like protein 7 OS=O	no	no	0.946	0.767	0.406	1e-82

>sp|Q9LFW3|COBL4_ARATH COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2

 Score =  476 bits (1225), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/397 (58%), Positives = 279/397 (70%), Gaps = 43/397 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWTADGYVA VT+NN Q+YR I  PGWTLGW WAKKEVIWS+VGAQ T+QGDCSKFK N
Sbjct: 37  MSWTADGYVATVTMNNFQIYRHIQNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGN 96

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           +PHCC++ P +VDLLPGVP NQQF                   +    +  GL+GT+NKT
Sbjct: 97  VPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAAVSQFQVSAGLAGTTNKT 156

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A I+  T F +++ RRKT A+MTW VTCTYSQ LA K+P 
Sbjct: 157 VKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQALMTWNVTCTYSQFLARKHPS 216

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIA------------------------HNTC 199
           CCVS SSFYN  ITPCPSC+CGC N+ SCV A                        H+ C
Sbjct: 217 CCVSFSSFYNDTITPCPSCACGCENKKSCVKADSKILTKKGLNTPKKDNTPLLQCTHHMC 276

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           P+RVHWHVK NYK +W  KI ITNFN + + T WTL  QHPNL NVT+V+ F YKP++ Y
Sbjct: 277 PVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNNVTQVFSFDYKPVSPY 336

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
             +NDTGMFYG K+YNDLLMEAGP G +QSE++L KD+ TFT ++G AFP KVY NGDEC
Sbjct: 337 GSINDTGMFYGTKFYNDLLMEAGPSGNVQSEVLLQKDQKTFTFKQGWAFPRKVYFNGDEC 396

Query: 320 MMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW 356
           M+ PPDSYP LPNSA  G  AS +L  +LL++ ++ W
Sbjct: 397 MLPPPDSYPFLPNSAQ-GNFASFSL-TILLLLFISIW 431

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z4G7|COBL6_ORYSJ COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/414 (53%), Positives = 268/414 (64%), Gaps = 60/414 (14%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA+VTINN Q YR IM PGWT+GW WA++EVIWS+VGAQATDQGDCS+FK N
Sbjct: 38  MSWTPDGYVAMVTINNYQTYRQIMAPGWTVGWTWARQEVIWSMVGAQATDQGDCSRFKAN 97

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSNKT 103
           +PHCCRR P +VDLLPGVP NQQ                      A  + VG +GT+N+T
Sbjct: 98  LPHCCRRTPAVVDLLPGVPYNQQIANCCRGGVLPAYGQAPSAAAAAFQVSVGQAGTTNRT 157

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           VRLP+NF + GPGPGYTCG A ++  T F +++ RRKT A+MTW VTCTYSQ LASK P 
Sbjct: 158 VRLPRNFTLLGPGPGYTCGRARVVPSTVFLTADRRRKTQALMTWNVTCTYSQHLASKYPS 217

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIAH--------------------------- 196
           CCVS SSFYN  I PC  C+CGC     CV +                            
Sbjct: 218 CCVSFSSFYNDTIVPCAKCACGCDAHKPCVRSERDGKRLAVTGKKHDANANAHGRGNGVA 277

Query: 197 -------------NTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLK 243
                        + CP+RVHWHVK NY+++W AKITI NFN + ++T WTLV QHPNL 
Sbjct: 278 AAAMAAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLD 337

Query: 244 NVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLE 303
           N+T+V+ F YKP+  Y  +NDT MFYG+KY+ND LMEAGP+G +QSE+++ KD  TFT  
Sbjct: 338 NITEVFSFDYKPVVSYGSINDTAMFYGLKYFNDQLMEAGPHGNVQSEVLMRKDARTFTFR 397

Query: 304 KGRAFPSKVYVNGDECMMLPPDSYPSLPNSADAGP---IASSALAAVLLMILLA 354
           +G AFP KVY NGDEC M PPDSYP LPN+A       + S+   A L+  L+A
Sbjct: 398 QGWAFPRKVYFNGDECQMPPPDSYPYLPNAAPPAAASLVGSAVAMAALVFFLMA 451

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1

 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/381 (54%), Positives = 256/381 (67%), Gaps = 47/381 (12%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA+VT+ N Q YR I +PGWTLGW WAKKEVIWS+VGAQ T+QGDCSK+K N
Sbjct: 53  MSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGN 112

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC+++P +VDLLPG P NQQ                      +  + VG +GT+NKT
Sbjct: 113 IPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAASSFQISVGAAGTTNKT 172

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           VR+P+NF + GPGPGYTCG A I+ PT F +++ RR T AMMTW +TCTYSQ LA + P 
Sbjct: 173 VRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMTWNITCTYSQFLAQRTPT 232

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGN---ENSCVIAHNT---------------------- 198
           CCVSLSSFYN  I  CP+C+CGC N   E+   +  +T                      
Sbjct: 233 CCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQ 292

Query: 199 -----CPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLY 253
                CPIRVHWHVK NYK++W  KITITNFN + ++TQW LV QHPNL N+T+++ F Y
Sbjct: 293 CTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNLDNITQIFSFNY 352

Query: 254 KPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVY 313
           K L  Y  LNDT M +G+K+YND L EAGP G +QSE++  KD++TFT EKG AFP ++Y
Sbjct: 353 KSLTPYAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFRKDQSTFTFEKGWAFPRRIY 412

Query: 314 VNGDECMMLPPDSYPSLPNSA 334
            NGD C+M PPDSYP LPN  
Sbjct: 413 FNGDNCVMPPPDSYPFLPNGG 433

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60E70|COBL3_ORYSJ COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/404 (53%), Positives = 264/404 (65%), Gaps = 49/404 (12%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA+VT+ N Q +R I  PGW LGW WAKKEVIWS+VGAQ T+QGDCSKFK  
Sbjct: 53  MSWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGG 112

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFIYIVAK-----------------VLRVGLSGTSNKT 103
            PHCC+++P +VDLLPG P N Q                         + VGL+GT+NKT
Sbjct: 113 TPHCCKKDPTVVDLLPGTPYNMQIANCCKAGVINTFNQDPSNAASSFQISVGLAGTTNKT 172

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF +  PGPGYTCG A I+ PT FF+ +GRR T A+MTW VTCTYSQ LA K P 
Sbjct: 173 VKLPKNFTLKAPGPGYTCGRAMIVRPTKFFTGDGRRATQALMTWNVTCTYSQFLAQKTPS 232

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNE----NSCV------------------------IA 195
           CCVSLSSFYN  I  CP+CSCGC N      SCV                          
Sbjct: 233 CCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSAIDGPGKWTGQPLVQCT 292

Query: 196 HNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKP 255
            + CPIR+HWHVK NYK++W  KITITNFN + ++TQW LV QHPN  N+T+++ F YKP
Sbjct: 293 SHMCPIRIHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVAQHPNFNNITQLFSFNYKP 352

Query: 256 LNFY-QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYV 314
           L  Y   +NDT MF+G+K+YNDLLM+AGP G  QSEL+L KD   FT +KG AFP +VY 
Sbjct: 353 LTPYGSKINDTAMFWGVKFYNDLLMQAGPLGNAQSELLLRKDSKDFTFDKGWAFPHRVYF 412

Query: 315 NGDECMMLPPDSYPSLPNSA--DAGPIASSALA-AVLLMILLAF 355
           NGD C+M PPD+YP LPN++     P+  S L  +++L  LLA+
Sbjct: 413 NGDNCVMPPPDAYPWLPNASPLTKQPLTLSVLVFSIVLATLLAY 456

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z4G8|COBL1_ORYSJ COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/399 (52%), Positives = 263/399 (65%), Gaps = 50/399 (12%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           + WT DGYVA+V++ N Q YR I +PGW LGW+WAKKE+IW++ G QAT+QGDCSKFK+N
Sbjct: 45  LQWTPDGYVAVVSLYNYQQYRHIQSPGWKLGWVWAKKEIIWAMNGGQATEQGDCSKFKSN 104

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSNKT 103
           IPHCC+++P IVDLLPG P N Q                    I +  + VG +GT+NKT
Sbjct: 105 IPHCCKKDPEIVDLLPGTPYNMQIANCCKGGVLNSWAQDPANAIASFQVSVGQAGTTNKT 164

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           VR+P+NF +  PGPGYTCG+A ++ PT FFS +GRR T A MTW VTCTYSQ +A ++P 
Sbjct: 165 VRVPRNFTLKSPGPGYTCGSAKVVRPTKFFSQDGRRTTQAHMTWNVTCTYSQIVAQRSPT 224

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNEN-------------SCVIAHNT------------ 198
           CCVSLSSFYN  I  CP+CSCGC N               S V  HN             
Sbjct: 225 CCVSLSSFYNDTIVNCPTCSCGCQNNKPGSCVEGNSPYLASVVNTHNKDSLTPLVQCTSH 284

Query: 199 -CPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLN 257
            CPIRVHWHVK NYK++W  KIT+TNFN + +++QW LV QHP+  N+T ++ F YK LN
Sbjct: 285 MCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLN 344

Query: 258 FYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGD 317
            Y  +NDT M +GIKYYNDLLM AGP G +QSEL+  KD  +FT EKG AFP +VY NGD
Sbjct: 345 PYGVINDTAMLWGIKYYNDLLMTAGPDGNVQSELLFKKDPKSFTFEKGWAFPRRVYFNGD 404

Query: 318 ECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW 356
            C+M PPD+YP LPN       AS+ + + +L+  +  W
Sbjct: 405 NCVMPPPDAYPWLPN-------ASTRVMSSILLPFITIW 436

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SRT7|COBL1_ARATH COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/398 (51%), Positives = 256/398 (64%), Gaps = 45/398 (11%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           ++WT DGYVA VT+ N Q YR I  PGWTLGW WAK+EVIW + G Q T+QGDCSKFK  
Sbjct: 50  ITWTGDGYVATVTVYNFQQYRHIQAPGWTLGWSWAKREVIWGMNGGQTTEQGDCSKFKGT 109

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC++ P +VDLLPG P NQQ                    + A  L VG +GT+NKT
Sbjct: 110 IPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPATAVSAFQLTVGQAGTTNKT 169

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           VR+PKNF +  PGPGYTC  A I+ PT F  ++ RR T A+MTW VTCTYSQ LA K P 
Sbjct: 170 VRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQALMTWNVTCTYSQFLAQKTPT 229

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNEN---SCV-------------------------IA 195
           CCVSLSSFYN  I  CP+CSCGC N +   +CV                           
Sbjct: 230 CCVSLSSFYNKTIVSCPTCSCGCRNTSQPGNCVDPKGPRIASVIPNPGKNAYIPPLVQCT 289

Query: 196 HNTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKP 255
            + CP+R+HWHVK NYK++W  K+TITNFN   +++QW LV QHPN  N+T+ + F YKP
Sbjct: 290 KHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQHPNFDNLTQTFSFNYKP 349

Query: 256 LNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVN 315
           L  Y  +NDTG+ +GIK+YNDLLM+AGP+G +QSEL+  K+ + FT EKG AFP ++Y N
Sbjct: 350 LTPYASINDTGILWGIKFYNDLLMQAGPFGNVQSELLFQKEASAFTFEKGWAFPRRIYFN 409

Query: 316 GDECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILL 353
           GD C+M PPDSYP LPN+     + S   A  LL+I+ 
Sbjct: 410 GDNCVMPPPDSYPWLPNTGSHKSVGSLFAAMALLLIVF 447

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q7|COBL2_ARATH COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2

 Score =  423 bits (1087), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/393 (52%), Positives = 257/393 (65%), Gaps = 43/393 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA+VTI N Q YR I  PGW LGW W KKEVIWS+VG QAT+QGDCSKFK N
Sbjct: 45  MSWTGDGYVAVVTIFNFQQYRHIEAPGWQLGWSWMKKEVIWSMVGGQATEQGDCSKFKGN 104

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC++ P IVDLLPG P NQQ                    I +  + VG SGT+N T
Sbjct: 105 IPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPATAISSFQISVGQSGTTNTT 164

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           VR P+N  +  PGPGYTCG A ++ P+ F S++ RRKT +++TW +TCTYSQ LA K P 
Sbjct: 165 VRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQSLLTWNITCTYSQFLARKTPT 224

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNEN---SCV---------------------IAHNTC 199
           CCVSLS+FYN  I PCP+CSCGC N +   +CV                        + C
Sbjct: 225 CCVSLSAFYNETIVPCPTCSCGCQNSSQAGTCVDPKIASVVPALGKNNLEPLLQCTQHMC 284

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           PIRVHWHVK +YK++W  K+ ITNFN   +++QW LV QHPN  N+TK++ F YKPLN Y
Sbjct: 285 PIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNFDNLTKLFSFNYKPLNPY 344

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
             +NDT M +GIK+YND L +AGP G +QSEL+  K+   FT EKG AFP ++Y NGD C
Sbjct: 345 LNINDTAMLWGIKFYNDFLSQAGPVGNVQSELLFQKNPLEFTFEKGWAFPRRIYFNGDNC 404

Query: 320 MMLPPDSYPSLPNSADAGPIASSALAAVLLMIL 352
           +M PPDSYP LPN++    IA+S    +L+  L
Sbjct: 405 VMPPPDSYPWLPNASPN--IATSPFVILLITFL 435

Arabidopsis thaliana (taxid: 3702)

>sp|Q75IW1|COBL2_ORYSJ COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/398 (51%), Positives = 255/398 (64%), Gaps = 44/398 (11%)

Query: 2   SWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNI 61
            WT DGYVA+VTI N Q YR I  PGW+LGW WAKKE+IWS+ G QAT+QGDCS FK NI
Sbjct: 47  QWTPDGYVAVVTIYNFQKYRHIQAPGWSLGWAWAKKEIIWSMAGGQATEQGDCSAFKANI 106

Query: 62  PHCCRRNPVIVDLLPGVPMNQQF----------------IYIVAKV-LRVGLSGTSNKTV 104
           PHCC+R+P +VDL+PG P N QF                +  VA   + VG SGTSNKTV
Sbjct: 107 PHCCKRDPRVVDLVPGAPYNMQFGNCCKGGVLTSWVQDPLNAVASFQITVGHSGTSNKTV 166

Query: 105 RLPKNFYIFGPGPGYTCG-AATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           + PKNF +  PGPGY+CG A  +  PT F S +GRR T A +TW VTCTYSQ +A + P 
Sbjct: 167 KAPKNFTLKAPGPGYSCGLAQEVKPPTRFISLDGRRTTQAHVTWNVTCTYSQFVAQRAPT 226

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNEN--SCVIAH------------------------N 197
           CCVSLSSFYN  I  CP C+CGC N+   SCV  +                        +
Sbjct: 227 CCVSLSSFYNETIVNCPKCACGCQNKKPGSCVEGNSPYLASVVNGPGKGSLTPLVQCTPH 286

Query: 198 TCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLN 257
            CPIRVHWHVK NY+ +W  K+TITN+N + +++QW LV QHPN +NV+ V+ F YK LN
Sbjct: 287 MCPIRVHWHVKLNYRDYWRVKVTITNWNYRMNYSQWNLVVQHPNFENVSTVFSFNYKSLN 346

Query: 258 FYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGD 317
            Y  +NDT M +G+KYYNDLLM AGP G +QSEL+  KD++TFT +KG AFP ++Y NG+
Sbjct: 347 PYGVINDTAMMWGVKYYNDLLMVAGPDGNVQSELLFRKDRSTFTFDKGWAFPRRIYFNGE 406

Query: 318 ECMMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAF 355
            C+M  PD YP LP S+         L + L+   LAF
Sbjct: 407 SCVMPSPDLYPWLPPSSTPRFRTVFLLMSFLVCGTLAF 444

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8W3E8|COBL4_ORYSJ COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1

 Score =  338 bits (868), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 176/378 (46%), Positives = 231/378 (61%), Gaps = 51/378 (13%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCS--KFK 58
           M WT DGY A+VT++N Q +R I  PGW LGW W +KEVIWS+ GAQA +QGDCS  K  
Sbjct: 44  MQWTPDGYAAVVTLSNYQQFRHIQPPGWQLGWTWQQKEVIWSMYGAQAIEQGDCSMSKEG 103

Query: 59  NNIPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSN 101
           +N+PH C+++P +VDLLPG P++ Q                      +  + VG SG SN
Sbjct: 104 SNVPHSCKKHPTVVDLLPGAPIDLQIANCCKAGSLSAFSQDPANSAASFQIIVGHSGNSN 163

Query: 102 KTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKN 161
           +TVR+PKNF +  PGPGYTC  A I+ P+ F S +GRR T  +MTW V CTYSQ LA K 
Sbjct: 164 ETVRVPKNFSLMAPGPGYTCSRAMIVKPSRFLSPDGRRATQVLMTWNVICTYSQFLAQKV 223

Query: 162 PKCCVSLSSFYNPMITPCPSCSCGCGNENS----CV---------IAH------------ 196
           P CCVSLSSF N     CP+CSCGC NE S    CV         I H            
Sbjct: 224 PSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAPDLQSIIHGPGRWTWQPLLQ 283

Query: 197 ---NTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLY 253
              + CP++++WH+    K+H+  KIT+TN N + +FT+W LV Q+  + ++T++  F Y
Sbjct: 284 CTSHMCPVKINWHLMLKDKEHYRVKITVTNLNYRMNFTEWNLVVQYHPILDITQISGFNY 343

Query: 254 KPLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKD---KNTFTLEKGRAFPS 310
           K +   + +NDT M +G+K Y DLLM+AGP G +Q ELI+ KD    +T    KGRAFP 
Sbjct: 344 KSIQVGK-INDTTMLWGVKPYYDLLMQAGPLGNVQGELIVRKDFRASSTTNNNKGRAFPV 402

Query: 311 KVYVNGDECMMLPPDSYP 328
           +VY NGD C+M PPD+YP
Sbjct: 403 RVYFNGDNCVMPPPDAYP 420

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XR91|COBL7_ORYSJ COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2

 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/396 (40%), Positives = 224/396 (56%), Gaps = 59/396 (14%)

Query: 8   YVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNI-PHCCR 66
           Y  +V+++N Q+YR I  PGW L W WA  E+IW + GA+AT+QGDC + +    PHCC 
Sbjct: 45  YTVMVSVHNHQLYRHIEQPGWRLSWRWAGNEIIWGMTGAEATEQGDCHRIRGATRPHCCE 104

Query: 67  RNPVIVDLLPGVPMNQQF----------------------IYIVAKVLRVGLSGTSNKTV 104
           + PVIVDL PG P N Q                         +V    R       ++  
Sbjct: 105 KQPVIVDLPPGTPYNNQVSSCCRGGVLSSLTQNNRTSTAAFQMVVGGFRRATYHDGDRGP 164

Query: 105 RLPKNFYIFGPG-PGYTCGAATIMVPTS---FFSSNGRRKTYAMMTWTVTCTYSQTLASK 160
            LP  F   G G PGY+C  AT +  TS   F     R +    +TW VTCTYSQ + + 
Sbjct: 165 ALPSRF---GVGVPGYSCSNATKVNATSSERFLLP--RARAPCAVTWQVTCTYSQFMEAA 219

Query: 161 NPKCCVSLSSFYNPMITPCPSCSCGCGNENS---CV---------------------IAH 196
           +P CCVSLSSFYN  I PCP CSCGC    +   C+                        
Sbjct: 220 SPTCCVSLSSFYNSTIVPCPRCSCGCPRSPTAPQCISEGEKPELPAGDGEAVAPVFRCTD 279

Query: 197 NTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPL 256
           + CP+RVHWHVK +Y+++W  K+TITN+N  ++++ W LV QHPNL+++T+++ F Y+PL
Sbjct: 280 HMCPVRVHWHVKISYREYWRVKVTITNYNQVKNYSDWNLVVQHPNLRSLTQLFSFNYQPL 339

Query: 257 NFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNG 316
             Y  LNDTGMF+GI+YYN+++++    G +Q+E+IL KDK+ FT   G AFP +VY +G
Sbjct: 340 IEYGTLNDTGMFWGIQYYNEMMLQD---GNVQTEMILKKDKSDFTFSGGWAFPRRVYFDG 396

Query: 317 DECMMLPPDSYPSLPNSADAGPIASSALAAVLLMIL 352
            EC+M PPD YP LPN      ++++ L A   ++L
Sbjct: 397 HECVMPPPDQYPLLPNGGPDSRVSAAQLIASSCLLL 432

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
429326460	438	COBRA-like protein [Populus tomentosa]	1.0	0.812	0.636	1e-140
429326458	453	COBRA-like protein [Populus tomentosa]	0.994	0.781	0.602	1e-138
255547141	461	Protein COBRA precursor, putative [Ricin	0.952	0.735	0.618	1e-136
224124110	453	predicted protein [Populus trichocarpa]	0.971	0.763	0.602	1e-135
118488472	453	unknown [Populus trichocarpa]	0.971	0.763	0.602	1e-135
383081847	430	COBRA-like protein [Eucalyptus globulus	1.0	0.827	0.590	1e-135
359491365	437	PREDICTED: LOW QUALITY PROTEIN: COBRA-li	0.997	0.812	0.611	1e-134
425862818	430	COBRA-like protein [Eucalyptus globulus]	1.0	0.827	0.588	1e-134
297734084	954	unnamed protein product [Vitis vinifera]	0.997	0.372	0.611	1e-134
383081843	430	COBRA-like protein [Eucalyptus pilularis	1.0	0.827	0.585	1e-134

>gi|429326460|gb|AFZ78570.1| COBRA-like protein [Populus tomentosa]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/393 (63%), Positives = 289/393 (73%), Gaps = 37/393 (9%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           +SWT DGYVA V +NN QMYR IM+PGWTLGW WAKKEVIWS+VGAQATDQGDCS FK N
Sbjct: 42  LSWTPDGYVAAVLMNNFQMYRQIMSPGWTLGWTWAKKEVIWSMVGAQATDQGDCSNFKGN 101

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC RNP +VDLLPGVP  QQ+                   + +  L VGLSGTSN T
Sbjct: 102 IPHCCTRNPTVVDLLPGVPKTQQYSDCCKGGVLASWGQEPTAAVSSFQLSVGLSGTSNTT 161

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V LP+NF++ GPGPGYTC AATI+ P+ FFSS+G+RKT AMM+WTVTC+YSQ L SKNP 
Sbjct: 162 VALPQNFFLLGPGPGYTCSAATIVSPSVFFSSDGKRKTQAMMSWTVTCSYSQMLVSKNPS 221

Query: 164 CCVSLSSFYNPMITPCPSCSCGC-GNEN-SCVIAH------------------NTCPIRV 203
           CCVSLSSFYN  ITPCPSCSCGC  NEN SCV+++                  + CPIRV
Sbjct: 222 CCVSLSSFYNSKITPCPSCSCGCQNNENTSCVMSNSRISSVVEASTSMLECTSHMCPIRV 281

Query: 204 HWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLN 263
           HWHVKANYK++W  KIT+TNFN +++FT WTLV QHPNL NVT+VY FLYK L  +  LN
Sbjct: 282 HWHVKANYKEYWRVKITVTNFNYRKNFTLWTLVAQHPNLNNVTRVYSFLYKSLMLFSTLN 341

Query: 264 DTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLP 323
           DT MFYG K  ND L+EAG  G +QSE++LGKD + FTLE G  FPS++Y +GDECMM P
Sbjct: 342 DTAMFYGNKKNNDKLLEAGLNGNVQSEILLGKDMSRFTLEHGWGFPSRIYFDGDECMMPP 401

Query: 324 PDSYPSLPNSADAGPIASSALAAVLLMILLAFW 356
           PDSYPSLPNSA   P ASS  A  L++ILLAFW
Sbjct: 402 PDSYPSLPNSAPFSPTASSTPAIFLILILLAFW 434

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326458|gb|AFZ78569.1| COBRA-like protein [Populus tomentosa]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/395 (60%), Positives = 289/395 (73%), Gaps = 41/395 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA VT++N QMYR I++PGWTL W WAKKEV+WS+VGAQ T+QGDCSKFK N
Sbjct: 57  MSWTPDGYVATVTMSNFQMYRHIISPGWTLSWSWAKKEVLWSMVGAQTTEQGDCSKFKGN 116

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC++ P +VDLLPGVP NQQF                   + A  + VGL+GTSNKT
Sbjct: 117 IPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVMAAWGQDPTASVSAFQVSVGLAGTSNKT 176

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A I+  T F + + RRKT A+MTW VTCTYSQ LASKNP 
Sbjct: 177 VKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPT 236

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIA------------------------HNTC 199
           CCVS SSFYN  ITPCP+C+CGC N+NSCV +                        H+ C
Sbjct: 237 CCVSFSSFYNETITPCPTCACGCQNKNSCVKSNSKESHKKGINTPKKDNTPLLQCTHHMC 296

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           PIRVHWHVK NY+ +W AK+ +TNFN + ++T+WTLV QHPNL NVT+V+ F YKPL  Y
Sbjct: 297 PIRVHWHVKVNYRDYWRAKVAVTNFNYRMNYTEWTLVVQHPNLNNVTRVFSFDYKPLVPY 356

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
           + +NDTGMFYG+K+YNDLLMEAGP+G +QSE++L KDKNTF+L++G AFP KVY NGDEC
Sbjct: 357 ESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDKNTFSLKQGWAFPRKVYFNGDEC 416

Query: 320 MMLPPDSYPSLPNSADAGPIASSALAAVLLMILLA 354
            + PPD+YP LPNSA A P +  ++AA LL ILL+
Sbjct: 417 RLPPPDTYPYLPNSAYANPTSILSMAASLLFILLS 451

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547141|ref|XP_002514628.1| Protein COBRA precursor, putative [Ricinus communis] gi|223546232|gb|EEF47734.1| Protein COBRA precursor, putative [Ricinus communis]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/380 (61%), Positives = 281/380 (73%), Gaps = 41/380 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA VT++N QMYR I++PGWTL W WAKKEVIWS+ GAQAT+QGDCSKFK N
Sbjct: 65  MSWTPDGYVATVTMSNFQMYRHIISPGWTLSWSWAKKEVIWSMNGAQATEQGDCSKFKGN 124

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC++ P IVDLLPGVP NQQF                   + A  + VGL+GTSNKT
Sbjct: 125 IPHCCKKTPTIVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSASVSAFQVSVGLAGTSNKT 184

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A ++  T FF+ + RRKT A+MTW VTCTYSQ LASKNP 
Sbjct: 185 VKLPKNFTLLGPGPGYTCGPAKVVPSTVFFTPDHRRKTQALMTWNVTCTYSQFLASKNPT 244

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIA------------------------HNTC 199
           CCVSLSSFYN  ITPCPSC+CGC N+NSC+++                        H+ C
Sbjct: 245 CCVSLSSFYNETITPCPSCACGCRNKNSCIMSDSKEAHRKGINTPKKDNTPLLQCTHHMC 304

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           P+RVHWHVK NYK +W AK+ +TNFN + ++TQWTLV QHPNL NVT+V+ F YKPL  Y
Sbjct: 305 PVRVHWHVKVNYKDYWRAKVAVTNFNYRMNYTQWTLVVQHPNLNNVTQVFSFDYKPLVPY 364

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
           + +NDTGMFYG+K+YNDLLMEAGP+G +QSE++L KD+NTFTL++G AFP KVY NGDEC
Sbjct: 365 ESINDTGMFYGMKFYNDLLMEAGPFGNIQSEVLLRKDRNTFTLKQGWAFPRKVYFNGDEC 424

Query: 320 MMLPPDSYPSLPNSADAGPI 339
            M PPD+YP LPNSA   P+
Sbjct: 425 KMPPPDAYPYLPNSAYRNPV 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124110|ref|XP_002330107.1| predicted protein [Populus trichocarpa] gi|222871241|gb|EEF08372.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/387 (60%), Positives = 284/387 (73%), Gaps = 41/387 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA VT++N QMYR I++PGWTL W WAKKEV+WS+VGAQ T+QGDCSKFK N
Sbjct: 57  MSWTPDGYVATVTMSNFQMYRHIISPGWTLSWSWAKKEVLWSMVGAQTTEQGDCSKFKGN 116

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC++ P +VDLLPGVP NQQF                   + A  + VGL+GTSNKT
Sbjct: 117 IPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVMAAWGQDPTASVSAFQVSVGLAGTSNKT 176

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A ++  T F + + RRKT A+MTW VTCTYSQ LASKNP 
Sbjct: 177 VKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPT 236

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIA------------------------HNTC 199
           CCVS SSFYN  ITPCP+C+CGC N+NSCV +                        H+ C
Sbjct: 237 CCVSFSSFYNETITPCPTCACGCQNKNSCVKSNSKESHKKGINTPKKDNTPLLQCTHHMC 296

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           PIRVHWHVK NY+ +W AK+ +TNFN + ++T+WTLV QHPNL NVT+V+ F YKPL  Y
Sbjct: 297 PIRVHWHVKVNYRDYWRAKVAVTNFNYRMNYTEWTLVVQHPNLNNVTQVFSFDYKPLVPY 356

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
           + +NDTGMFYG+K+YNDLLMEAGP+G +QSE++L KDKNTF+L++G AFP KVY NGDEC
Sbjct: 357 ESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDKNTFSLKQGWAFPRKVYFNGDEC 416

Query: 320 MMLPPDSYPSLPNSADAGPIASSALAA 346
           M+ PPD+YP LPNSA A P +  ++AA
Sbjct: 417 MLPPPDTYPYLPNSAYANPTSILSMAA 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488472|gb|ABK96050.1| unknown [Populus trichocarpa]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/387 (60%), Positives = 284/387 (73%), Gaps = 41/387 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA VT++N QMYR I++PGWTL W WAKKEV+WS+VGAQ T+QGDCSKFK N
Sbjct: 57  MSWTPDGYVATVTMSNFQMYRHIISPGWTLSWSWAKKEVLWSMVGAQTTEQGDCSKFKGN 116

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQF-----------------IYIVAKVLRVGLSGTSNKT 103
           IPHCC++ P +VDLLPGVP NQQF                   + A  + VGL+GTSNKT
Sbjct: 117 IPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVMAAWGQDPTASVSAFQVSVGLAGTSNKT 176

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A ++  T F + + RRKT A+MTW VTCTYSQ LASKNP 
Sbjct: 177 VKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPT 236

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIA------------------------HNTC 199
           CCVS SSFYN  ITPCP+C+CGC N+NSCV +                        H+ C
Sbjct: 237 CCVSFSSFYNETITPCPTCACGCQNKNSCVKSNSKESHKKGINTPKKDNTPLLQCTHHMC 296

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           PIRVHWHVK NY+ +W AK+ +TNFN + ++T+WTLV QHPNL NVT+V+ F YKPL  Y
Sbjct: 297 PIRVHWHVKVNYRDYWRAKVAVTNFNYRMNYTEWTLVVQHPNLNNVTQVFSFDYKPLVPY 356

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
           + +NDTGMFYG+K+YNDLLMEAGP+G +QSE++L KDKNTF+L++G AFP KVY NGDEC
Sbjct: 357 ESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDKNTFSLKQGWAFPRKVYFNGDEC 416

Query: 320 MMLPPDSYPSLPNSADAGPIASSALAA 346
           M+ PPD+YP LPNSA A P +  ++AA
Sbjct: 417 MLPPPDTYPYLPNSAYANPTSILSMAA 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383081847|dbj|BAM05578.1| COBRA-like protein [Eucalyptus globulus subsp. globulus]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/396 (59%), Positives = 283/396 (71%), Gaps = 40/396 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA+VT+NN QMYR IM+PGWT+GW WAKKE+IWS+VGAQ T+QGDCSKFK  
Sbjct: 35  MSWTTDGYVAVVTLNNFQMYRHIMSPGWTIGWAWAKKEIIWSMVGAQTTEQGDCSKFKAA 94

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSNKT 103
           IPHCC+R P +VDLLPGVP N Q+                   + A  + VGLSGTSNKT
Sbjct: 95  IPHCCKRTPTVVDLLPGVPYNLQYANCCKGGVVAAWGQDPLASVSAFQISVGLSGTSNKT 154

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A ++  T+F +++ RRKT A+MTW VTCTYSQ LA KNP 
Sbjct: 155 VKLPKNFTLLGPGPGYTCGPAKVVPSTNFLTTDKRRKTQALMTWNVTCTYSQFLARKNPS 214

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCV-----------------------IAHNTCP 200
           CCVS SSFYN  ITPCPSC+CGC N+N+CV                         H+ CP
Sbjct: 215 CCVSFSSFYNETITPCPSCACGCQNKNTCVNDSKILSMAGVNTPKKDNAPLLQCTHHMCP 274

Query: 201 IRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQ 260
           +RVHWHVK NYK +W  KI ITNFN + ++T W+LV QHPNL NVT+V+   YKPL  Y+
Sbjct: 275 VRVHWHVKLNYKDYWRVKIAITNFNYRMNYTLWSLVVQHPNLNNVTQVFSMDYKPLVAYE 334

Query: 261 PLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECM 320
            +NDTGMF+G+KYYNDLLMEAGP G +QSE++L KDKNTFT ++G AFP KVY NGDECM
Sbjct: 335 SINDTGMFFGMKYYNDLLMEAGPLGNVQSEVLLQKDKNTFTFKQGWAFPRKVYFNGDECM 394

Query: 321 MLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW 356
           + PPDSYP LPNSA    +  S L + +L+++ A W
Sbjct: 395 LPPPDSYPFLPNSARRKLLPVSTLVSWVLLMMFAAW 430

Source: Eucalyptus globulus subsp. globulus

Species: Eucalyptus globulus

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491365|ref|XP_002265282.2| PREDICTED: LOW QUALITY PROTEIN: COBRA-like protein 4-like [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/396 (61%), Positives = 291/396 (73%), Gaps = 41/396 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT+DGYVA+VT++N QMYR IM+PGWTLGW+WAKKEVIWS+VGAQAT+QGDCSKFK N
Sbjct: 41  MSWTSDGYVAVVTMSNFQMYRHIMSPGWTLGWIWAKKEVIWSMVGAQATEQGDCSKFKGN 100

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSNKT 103
           IPHCC+RNP ++DLLPGVP NQQ                    + +  L VGLSGTSNKT
Sbjct: 101 IPHCCKRNPTVIDLLPGVPYNQQIANCCKGGVVASWGQDSSAAVSSFQLSVGLSGTSNKT 160

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           VRLPKNF + GPGPGYTCG A  +  + F SS+GRRKT A+MTW VTCTYSQ + SK P 
Sbjct: 161 VRLPKNFTLLGPGPGYTCGQAKTVPSSIFLSSDGRRKTQALMTWNVTCTYSQMVVSKYPS 220

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIA------------------------HNTC 199
           CCVS SSFYN  ITPC SC+CGC N+N+C+++                         + C
Sbjct: 221 CCVSFSSFYNSTITPCTSCACGCQNKNNCIMSDTKIESVVGLHTPTKDNMPLLQCTQHNC 280

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           P+RVHWHVK NYK++W  KITITNFN + ++TQWTLV QHPNL N+T+V+ F YKPL  Y
Sbjct: 281 PVRVHWHVKVNYKEYWRVKITITNFNYRMNYTQWTLVAQHPNLNNITQVFSFAYKPLIPY 340

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
             +ND+GMFYGIK+YND+LME GP G +QSE+IL KDKNTFTL++G AFP ++Y NGDEC
Sbjct: 341 TSINDSGMFYGIKFYNDVLMEDGPDGNVQSEMILQKDKNTFTLKEGWAFPQRIYFNGDEC 400

Query: 320 MMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAF 355
           MM  PDSYP L  SA A  IA S LA+++L+ILLAF
Sbjct: 401 MMPLPDSYPLLAGSAPANQIALSTLASLVLLILLAF 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|425862818|gb|AFY03623.1| COBRA-like protein [Eucalyptus globulus]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/396 (58%), Positives = 282/396 (71%), Gaps = 40/396 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT DGYVA+VT+NN QMYR IM+PGWT+GW WAKKE+IWS+VGAQ T+QGDCSKFK  
Sbjct: 35  MSWTTDGYVAVVTLNNFQMYRHIMSPGWTIGWAWAKKEIIWSMVGAQTTEQGDCSKFKAA 94

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSNKT 103
           IPH C+R P +VDLLPGVP N Q+                   + A  + VGLSGTSNKT
Sbjct: 95  IPHXCKRTPTVVDLLPGVPYNLQYANCCKGGVVAAWGQDPLASVSAFQISVGLSGTSNKT 154

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A ++  T+F +++ RRKT A+MTW VTCTYSQ LA KNP 
Sbjct: 155 VKLPKNFTLLGPGPGYTCGPAKVVPSTNFLTTDKRRKTQALMTWNVTCTYSQFLARKNPS 214

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCV-----------------------IAHNTCP 200
           CCVS SSFYN  ITPCPSC+CGC N+N+CV                         H+ CP
Sbjct: 215 CCVSFSSFYNETITPCPSCACGCQNKNTCVNDSKILSMAGVNTPKKDNAPLLQCTHHMCP 274

Query: 201 IRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQ 260
           +RVHWHVK NYK +W  KI ITNFN + ++T W+LV QHPNL NVT+V+   YKPL  Y+
Sbjct: 275 VRVHWHVKLNYKDYWRVKIAITNFNYRMNYTLWSLVVQHPNLNNVTQVFSMDYKPLVAYE 334

Query: 261 PLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECM 320
            +NDTGMF+G+KYYNDLLMEAGP G +QSE++L KDKNTFT ++G AFP KVY NGDECM
Sbjct: 335 SINDTGMFFGMKYYNDLLMEAGPLGNVQSEVLLQKDKNTFTFKQGWAFPRKVYFNGDECM 394

Query: 321 MLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW 356
           + PPDSYP LPNSA    +  S L + +L+++ A W
Sbjct: 395 LPPPDSYPFLPNSARXKLLPVSTLVSWVLLMMFAAW 430

Source: Eucalyptus globulus

Species: Eucalyptus globulus

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734084|emb|CBI15331.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/396 (61%), Positives = 291/396 (73%), Gaps = 41/396 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT+DGYVA+VT++N QMYR IM+PGWTLGW+WAKKEVIWS+VGAQAT+QGDCSKFK N
Sbjct: 63  MSWTSDGYVAVVTMSNFQMYRHIMSPGWTLGWIWAKKEVIWSMVGAQATEQGDCSKFKGN 122

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSNKT 103
           IPHCC+RNP ++DLLPGVP NQQ                    + +  L VGLSGTSNKT
Sbjct: 123 IPHCCKRNPTVIDLLPGVPYNQQIANCCKGGVVASWGQDSSAAVSSFQLSVGLSGTSNKT 182

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           VRLPKNF + GPGPGYTCG A  +  + F SS+GRRKT A+MTW VTCTYSQ + SK P 
Sbjct: 183 VRLPKNFTLLGPGPGYTCGQAKTVPSSIFLSSDGRRKTQALMTWNVTCTYSQMVVSKYPS 242

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCVIA------------------------HNTC 199
           CCVS SSFYN  ITPC SC+CGC N+N+C+++                         + C
Sbjct: 243 CCVSFSSFYNSTITPCTSCACGCQNKNNCIMSDTKIESVVGLHTPTKDNMPLLQCTQHNC 302

Query: 200 PIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFY 259
           P+RVHWHVK NYK++W  KITITNFN + ++TQWTLV QHPNL N+T+V+ F YKPL  Y
Sbjct: 303 PVRVHWHVKVNYKEYWRVKITITNFNYRMNYTQWTLVAQHPNLNNITQVFSFAYKPLIPY 362

Query: 260 QPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319
             +ND+GMFYGIK+YND+LME GP G +QSE+IL KDKNTFTL++G AFP ++Y NGDEC
Sbjct: 363 TSINDSGMFYGIKFYNDVLMEDGPDGNVQSEMILQKDKNTFTLKEGWAFPQRIYFNGDEC 422

Query: 320 MMLPPDSYPSLPNSADAGPIASSALAAVLLMILLAF 355
           MM  PDSYP L  SA A  IA S LA+++L+ILLAF
Sbjct: 423 MMPLPDSYPLLAGSAPANQIALSTLASLVLLILLAF 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383081843|dbj|BAM05576.1| COBRA-like protein [Eucalyptus pilularis] gi|383081845|dbj|BAM05577.1| COBRA-like protein [Eucalyptus pyrocarpa]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/396 (58%), Positives = 283/396 (71%), Gaps = 40/396 (10%)

Query: 1   MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
           MSWT+DGYVA+VT+NN Q+YR IM+PGWTLGW WAKKE+IWS+VGAQ T+QGDCSKFK  
Sbjct: 35  MSWTSDGYVAVVTLNNFQLYRHIMSPGWTLGWAWAKKEIIWSVVGAQTTEQGDCSKFKAA 94

Query: 61  IPHCCRRNPVIVDLLPGVPMNQQFI-----------------YIVAKVLRVGLSGTSNKT 103
           IPHCC++ P +VDLLPGVP NQQ+                   + A  + VGL+GTSNKT
Sbjct: 95  IPHCCKKTPTVVDLLPGVPYNQQYANCCKGGVVAAWGQDPLASVSAFQVGVGLAGTSNKT 154

Query: 104 VRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQTLASKNPK 163
           V+LPKNF + GPGPGYTCG A ++  T+F + + RRKT A+MTW VTCTYSQ LA KNP 
Sbjct: 155 VKLPKNFTLLGPGPGYTCGPAKVVPSTNFLTPDKRRKTQALMTWNVTCTYSQFLARKNPS 214

Query: 164 CCVSLSSFYNPMITPCPSCSCGCGNENSCV-----------------------IAHNTCP 200
           CCVS SSFYN  IT CPSC+CGC N+++CV                         H+ CP
Sbjct: 215 CCVSFSSFYNETITRCPSCACGCQNKDTCVNDSKILSMAGVNTPRKDNAPLLQCTHHMCP 274

Query: 201 IRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQ 260
           +RVHWHVK NYK +W  KI ITNFN + ++T W+LV QHPNL NVT+V+ F YKPL  Y+
Sbjct: 275 VRVHWHVKLNYKDYWRVKIAITNFNYRMNYTLWSLVVQHPNLNNVTQVFSFDYKPLVPYE 334

Query: 261 PLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECM 320
            +NDTGMF+G KYYNDLLMEAGP G +QSE++L KDKNTFT ++G AFP KVY NGDECM
Sbjct: 335 SINDTGMFFGTKYYNDLLMEAGPLGNVQSEVLLQKDKNTFTFKQGWAFPRKVYFNGDECM 394

Query: 321 MLPPDSYPSLPNSADAGPIASSALAAVLLMILLAFW 356
           + PPDSYP LPNSA    +  S L + +L+++ A W
Sbjct: 395 LPPPDSYPFLPNSARRKLLPVSTLVSWVLLMMFAAW 430

Source: Eucalyptus pilularis

Species: Eucalyptus pilularis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2143151	431	IRX6 "IRREGULAR XYLEM 6" [Arab	0.516	0.426	0.540	1e-90
TAIR|locus:2173532	456	COB "AT5G60920" [Arabidopsis t	0.376	0.293	0.626	4.5e-84
TAIR|locus:2086601	441	COBL2 "AT3G29810" [Arabidopsis	0.382	0.308	0.588	6.5e-81
TAIR|locus:2076507	452	COBL1 "COBRA-like protein 1 pr	0.379	0.298	0.592	1.7e-80
TAIR|locus:2024377	454	COBL6 "AT1G09790" [Arabidopsis	0.382	0.299	0.540	4.2e-65
TAIR|locus:2173547	204	COBL5 "COBRA-like protein 5 pr	0.424	0.740	0.475	6.5e-35
TAIR|locus:2130100	661	COBL7 "AT4G16120" [Arabidopsis	0.345	0.186	0.272	1.7e-18
TAIR|locus:2155889	663	SHV2 "SHAVEN 2" [Arabidopsis t	0.362	0.194	0.296	6.7e-16
TAIR|locus:2136452	668	COBL11 "COBRA-like protein 11	0.300	0.160	0.293	8.3e-16
TAIR|locus:2085785	672	COBL10 "COBRA-like protein 10	0.353	0.187	0.258	1.7e-15

TAIR|locus:2143151 IRX6 "IRREGULAR XYLEM 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 101/187 (54%), Positives = 123/187 (65%)

Query:   148 TVTCTYSQTLASKNPKCCVSLSSFYNPMITXXXXXXXXXXXXXXXVIAHNTCPIRVHWHV 207
             T+T   S     +N K CV   S    ++T                  H+ CP+RVHWHV
Sbjct:   228 TITPCPSCACGCENKKSCVKADS---KILTKKGLNTPKKDNTPLLQCTHHMCPVRVHWHV 284

Query:   208 KANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGM 267
             K NYK +W  KI ITNFN + + T WTL  QHPNL NVT+V+ F YKP++ Y  +NDTGM
Sbjct:   285 KTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNNVTQVFSFDYKPVSPYGSINDTGM 344

Query:   268 FYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMMLPPDSY 327
             FYG K+YNDLLMEAGP G +QSE++L KD+ TFT ++G AFP KVY NGDECM+ PPDSY
Sbjct:   345 FYGTKFYNDLLMEAGPSGNVQSEVLLQKDQKTFTFKQGWAFPRKVYFNGDECMLPPPDSY 404

Query:   328 PSLPNSA 334
             P LPNSA
Sbjct:   405 PFLPNSA 411

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2173532 COB "AT5G60920" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 84/134 (62%), Positives = 104/134 (77%)

Query:   199 CPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNF 258
             CPIRVHWHVK NYK++W  KITITNFN + ++TQW LV QHPNL N+T+++ F YK L  
Sbjct:   298 CPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNLDNITQIFSFNYKSLTP 357

Query:   259 YQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDE 318
             Y  LNDT M +G+K+YND L EAGP G +QSE++  KD++TFT EKG AFP ++Y NGD 
Sbjct:   358 YAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDN 417

Query:   319 CMMLPPDSYPSLPN 332
             C+M PPDSYP LPN
Sbjct:   418 CVMPPPDSYPFLPN 431

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009825 "multidimensional cell growth" evidence=RCA;IMP

GO:0009897 "external side of plasma membrane" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010215 "cellulose microfibril organization" evidence=IMP

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009930 "longitudinal side of cell surface" evidence=IDA

TAIR|locus:2086601 COBL2 "AT3G29810" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
 Identities = 80/136 (58%), Positives = 102/136 (75%)

Query:   199 CPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNF 258
             CPIRVHWHVK +YK++W  K+ ITNFN   +++QW LV QHPN  N+TK++ F YKPLN 
Sbjct:   284 CPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNFDNLTKLFSFNYKPLNP 343

Query:   259 YQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDE 318
             Y  +NDT M +GIK+YND L +AGP G +QSEL+  K+   FT EKG AFP ++Y NGD 
Sbjct:   344 YLNINDTAMLWGIKFYNDFLSQAGPVGNVQSELLFQKNPLEFTFEKGWAFPRRIYFNGDN 403

Query:   319 CMMLPPDSYPSLPNSA 334
             C+M PPDSYP LPN++
Sbjct:   404 CVMPPPDSYPWLPNAS 419

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2076507 COBL1 "COBRA-like protein 1 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
 Identities = 80/135 (59%), Positives = 105/135 (77%)

Query:   199 CPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNF 258
             CP+R+HWHVK NYK++W  K+TITNFN   +++QW LV QHPN  N+T+ + F YKPL  
Sbjct:   293 CPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQHPNFDNLTQTFSFNYKPLTP 352

Query:   259 YQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDE 318
             Y  +NDTG+ +GIK+YNDLLM+AGP+G +QSEL+  K+ + FT EKG AFP ++Y NGD 
Sbjct:   353 YASINDTGILWGIKFYNDLLMQAGPFGNVQSELLFQKEASAFTFEKGWAFPRRIYFNGDN 412

Query:   319 CMMLPPDSYPSLPNS 333
             C+M PPDSYP LPN+
Sbjct:   413 CVMPPPDSYPWLPNT 427

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

TAIR|locus:2024377 COBL6 "AT1G09790" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 74/137 (54%), Positives = 100/137 (72%)

Query:   199 CPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNF 258
             CPIR+HWHVK NY+++W  KIT TNFN  +++T W LV  HPNLK+V +V+ F YK L  
Sbjct:   290 CPIRIHWHVKVNYREYWRVKITATNFNTMKNYTNWNLVVLHPNLKSVQQVFSFNYKSLTP 349

Query:   259 YQ-PLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGD 317
             YQ  +NDTGMF+G+++YND+L++ G  G +Q+EL+L KD   FT  +G AFP ++  NGD
Sbjct:   350 YQNSINDTGMFWGVQFYNDVLLQEGKIGNVQTELLLKKDMGNFTFREGWAFPRRILFNGD 409

Query:   318 ECMMLPPDSYPSLPNSA 334
             EC+M  PD +P LP SA
Sbjct:   410 ECVMPSPDDFPRLPKSA 426

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2173547 COBL5 "COBRA-like protein 5 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 78/164 (47%), Positives = 97/164 (59%)

Query:     1 MSWTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNN 60
             ++WT DGYVA+VT  N Q  RSI  PGW + W   KKEVIW+++GA+ T QG CS FK N
Sbjct:    39 LNWTPDGYVAVVTAYNYQKQRSI--PGWKMSWRGTKKEVIWNMLGAKTTGQGGCSMFKGN 96

Query:    61 IPHCCRRNPVIVDLLPGVPMNQQFIYI----VAKV-------LRVGLSGTSNKTVRLPKN 109
             IP  C R P +VDLLPG P NQQ        V K        L VG +G S KT R+P N
Sbjct:    97 IPQSCVRKPTVVDLLPGTPFNQQIANCCKSGVLKPGSESAFQLSVGSAGNSVKTARMPAN 156

Query:   110 FYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTY 153
             F    P   Y CG +  + PT F +++ RR T A+MTW +TC +
Sbjct:   157 FMFTAPKQQYICGPSKNVRPTRFTTADKRRITAALMTWNITCVF 200

GO:0005886 "plasma membrane" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2130100 COBL7 "AT4G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
 Identities = 37/136 (27%), Positives = 61/136 (44%)

Query:   197 NTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLK-NVTKVYRFLYKP 255
             + C + ++WH+  +Y+  W A++T+ N+  + DF  W    Q  N      K Y F    
Sbjct:   496 DNCGVSINWHLATDYRGGWTARVTVFNWG-ETDFVDWFTAVQMKNAAPGFEKAYSFNAST 554

Query:   256 LNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKNTFTLEK----------G 305
             +      N+T    G+   N L+ E      L++  I GK ++  +  K          G
Sbjct:   555 IGI-NGKNNTIFMEGLPGLNYLVAERDGENPLKNPRIPGKQQSVMSFTKKLTPGINVPGG 613

Query:   306 RAFPSKVYVNGDECMM 321
               FPSKV+ NG+EC +
Sbjct:   614 DGFPSKVFFNGEECSL 629

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

TAIR|locus:2155889 SHV2 "SHAVEN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
 Identities = 43/145 (29%), Positives = 68/145 (46%)

Query:   197 NTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQ--HPNLKNVTKVYRFLYK 254
             + C + ++WH+ ++Y+  W  +ITI N+  + DF  W L  Q   P L    K Y F   
Sbjct:   494 DNCGVSINWHMASDYRGGWTVRITIFNWG-EIDFPNWFLAVQMKKPALLGFEKAYSFNAS 552

Query:   255 PLNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSEL-ILGKDKNTFTLEK----G---- 305
              L+    +N+T    G+   + L+ EA      +  + I GK ++     K    G    
Sbjct:   553 LLSVDGGVNNTIFMEGLPGLDYLVAEADEKDPKKKNIRIPGKQQSVIQFSKKLTPGINVA 612

Query:   306 -R-AFPSKVYVNGDECMMLPPDSYP 328
              R  FP+KV  NG+EC++  PD  P
Sbjct:   613 ERDGFPAKVIFNGEECLL--PDLLP 635

GO:0005886 "plasma membrane" evidence=ISM

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048765 "root hair cell differentiation" evidence=RCA;IMP

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2136452 COBL11 "COBRA-like protein 11 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 8.3e-16, Sum P(3) = 8.3e-16
 Identities = 34/116 (29%), Positives = 57/116 (49%)

Query:    61 IPHCCRRNPVIVDLLPGVPMNQQFIYIVAKVLRVGLSGTSNKTVRLP-KNFYIFG-PGPG 118
             +P CC+   ++   +   P   + I+ + +V +V      N+T   P +N+ I G   P 
Sbjct:   323 LPFCCKNGTLLPTHMD--PSKSKAIFQL-QVYKV--PPDQNRTAFFPPRNWKIDGIVNPT 377

Query:   119 YTCGAATIMVPTSFFSSNG-RRKTYAMMTWTVTCTYSQTLASKNPKCCVSLSSFYN 173
             Y CG    +  T F   +G +  TYA+ +W V C  ++    +  +CCVS S+FYN
Sbjct:   378 YKCGPPIRVDATPFPDPSGLQATTYAIASWQVICNITKP-KPQAARCCVSFSAFYN 432

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2085785 COBL10 "COBRA-like protein 10 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
 Identities = 37/143 (25%), Positives = 66/143 (46%)

Query:   197 NTCPIRVHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNL-KNVTKVYRFLYKP 255
             + C + ++WHV  +YK  W A++T+ N+ +   F  W +             VY F    
Sbjct:   507 DNCGVSINWHVSTDYKNGWTARLTVFNWRDFA-FEDWFVAIDMGKAGPGYENVYSFNGTR 565

Query:   256 LNFYQPLNDTGMFYGIKYYNDLLMEAGPYGYLQSELILGKDKN--TFT--------LEKG 305
             +    P N T +F G+   N L+ +      L+   + GK ++  +FT        + +G
Sbjct:   566 V---PPSNRTVIFQGLPGMNYLVGQVNGTNPLRDPPVPGKQQSVISFTKKNIKGLNIPEG 622

Query:   306 RAFPSKVYVNGDECMMLPPDSYP 328
               FP+K++ NG+EC +  P  +P
Sbjct:   623 DGFPTKLFFNGEECAL--PKHFP 643

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFW3	COBL4_ARATH	No assigned EC number	0.5869	0.9943	0.8213	yes	no
Q6Z4G7	COBL6_ORYSJ	No assigned EC number	0.5314	0.9943	0.7849	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
pfam04833	169	pfam04833, COBRA, COBRA-like protein	3e-66

>gnl|CDD|218285 pfam04833, COBRA, COBRA-like protein

 Score =  206 bits (526), Expect = 3e-66
 Identities = 86/173 (49%), Positives = 100/173 (57%), Gaps = 29/173 (16%)

Query: 8   YVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKN--NIPHCC 65
           YVA VTI N Q YR I  PGW L W WAKKEVIWS+ GA  T+QGDCSKF    + PHCC
Sbjct: 1   YVAQVTIENYQPYRHIDNPGWKLSWEWAKKEVIWSMRGAYTTEQGDCSKFYKDGDFPHCC 60

Query: 66  RRNPVIVDLLPGVPMNQQFIYIVAKVLR---------------------VGLS--GTSNK 102
           ++ P IVDL PG P +QQ    +A   +                     VG +   T+ K
Sbjct: 61  KKRPTIVDLPPGTPYDQQ----IANCCKNGVLLPRSQDPAKSVSAFQMSVGKAPPDTNRK 116

Query: 103 TVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMTWTVTCTYSQ 155
           TVR P+NF I GP PGYTCG A  + PT F   +GRR T A+ TW VTC YSQ
Sbjct: 117 TVRPPQNFTIKGPNPGYTCGPAVRVSPTRFPDPDGRRTTQALATWQVTCNYSQ 169

Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
PF04833	169	COBRA: COBRA-like protein; InterPro: IPR006918 In	100.0
PF00553	101	CBM_2: Cellulose binding domain; InterPro: IPR0019	91.59
PF00553	101	CBM_2: Cellulose binding domain; InterPro: IPR0019	84.43

>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []

Probab=100.00  E-value=4.2e-75  Score=519.51  Aligned_cols=148  Identities=60%  Similarity=1.097  Sum_probs=145.2

Q ss_pred             eEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCeeeec--CCccccccCCCeEEeCCCCCCCCceee
Q 040362            8 YVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFK--NNIPHCCRRNPVIVDLLPGVPMNQQFI   85 (356)
Q Consensus         8 Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC~~~k--~~~p~~C~k~P~IvDL~P~~~~d~qi~   85 (356)
                      |+|+|||+|||+|||||.|||+|||+|+|+||||+|+||||+|||||++|+  +++||||+|+|+|||||||+|+|+|||
T Consensus         1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~tdqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~   80 (169)
T PF04833_consen    1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTDQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIG   80 (169)
T ss_pred             CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceeccCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccc
Confidence            999999999999999999999999999999999999999999999999998  889999999999999999999999999


Q ss_pred             -----------------eeEEEEEEEeec--CCCCCcccCCcCeEEeCCCCCcccCCceeeCCccccCCCCcceeeEeee
Q 040362           86 -----------------YIVAKVLRVGLS--GTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMT  146 (356)
Q Consensus        86 -----------------s~s~FQm~Vg~~--~~~n~t~~~P~nf~l~~pgPgYtCg~~~~V~Pt~f~~p~g~r~t~Al~T  146 (356)
                                       |+|+|||+||++  +++|++++||+||+|++|||||+||+|++|+||+|+|+||||+||||||
T Consensus        81 nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~~pgYtCg~~~~V~pT~f~~~~g~r~t~A~~T  160 (169)
T PF04833_consen   81 NCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGPGPGYTCGPPKRVSPTVFPDPDGRRTTQALMT  160 (169)
T ss_pred             cccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCCCCCcCCCCcceeCCceeeCCCCCEEEEEEEE
Confidence                             999999999998  7777889999999999999999999999999999999999999999999


Q ss_pred             eeeEEeeec
Q 040362          147 WTVTCTYSQ  155 (356)
Q Consensus       147 WqVtC~ysq  155 (356)
                      |||||||||
T Consensus       161 WqvtC~ysq  169 (169)
T PF04833_consen  161 WQVTCNYSQ  169 (169)
T ss_pred             EeEEEEeeC
Confidence            999999997

The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].

>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3

Probab=91.59  E-value=0.46  Score=39.00  Aligned_cols=85  Identities=21%  Similarity=0.271  Sum_probs=57.6

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCeeeecCCccccccCCCeEEeCCCCCCCCcee
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQF   84 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC~~~k~~~p~~C~k~P~IvDL~P~~~~d~qi   84 (356)
                      .+||.++|+|.|... ..|+  ||+|.|+-..++-|=++.+|..+..|.=..+                -+  ..+|..|
T Consensus        12 ~~Gf~~~v~v~N~~~-~~i~--~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v----------------~~--~~wn~~i   70 (101)
T PF00553_consen   12 GGGFQGEVTVTNNGS-SPIN--GWTVTFTFPSGQTITSSWNATVSQSGNTVTV----------------TN--PSWNGTI   70 (101)
T ss_dssp             SSEEEEEEEEEESSS-STEE--SEEEEEEESTTEEEEEEESCEEEEETTEEEE----------------EE--SSTCSEE
T ss_pred             CCCeEEEEEEEECCC-CccC--CEEEEEEeCCCCEEeeeeccEEEecCCEEEE----------------Ec--CCcCccc
Confidence            589999999999877 4555  8999999998898889999988765431111                11  2356666


Q ss_pred             e--eeEEEEEEEeecCCCCCcccCCcCeEEeC
Q 040362           85 I--YIVAKVLRVGLSGTSNKTVRLPKNFYIFG  114 (356)
Q Consensus        85 ~--s~s~FQm~Vg~~~~~n~t~~~P~nf~l~~  114 (356)
                      +  +..+|=+++...+.    ..+|.+.+|.|
T Consensus        71 ~~G~s~~~Gf~~~~~~~----~~~p~~~t~ng   98 (101)
T PF00553_consen   71 APGGSVTFGFQASGSGS----SAAPSTCTVNG   98 (101)
T ss_dssp             EESEEEEEEEEEEESSS------SESEEEETT
T ss_pred             CCCCeEEEEEEEeCCCC----CCCCcEEEEcC
Confidence            6  33445555555432    24688888865

2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....

>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3

Probab=84.43  E-value=5.8  Score=32.53  Aligned_cols=99  Identities=20%  Similarity=0.297  Sum_probs=61.8

Q ss_pred             EeEEEeeccccceEEEEEEEeccCCcCccceeEEeecCCCCCcceEEEecceeCCCCCCCCccEEEEeccchhHHHhhhC
Q 040362          203 VHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAG  282 (356)
Q Consensus       203 IhWHVk~nYk~~W~vkiTi~N~~~~~ny~dW~~vvqhpn~~~~~~vySFN~t~l~~y~~~N~T~m~~Gl~~yN~ll~~~g  282 (356)
                      +-.-|..+.-+++.++|+|+|=.. ....+|.+-++.|.-.-+++++  |++.-.    ..+++.+-+. .||-.|.   
T Consensus         3 v~~~v~~~W~~Gf~~~v~v~N~~~-~~i~~W~v~~~~~~~~~i~~~W--na~~s~----~g~~~~v~~~-~wn~~i~---   71 (101)
T PF00553_consen    3 VTYTVTNSWGGGFQGEVTVTNNGS-SPINGWTVTFTFPSGQTITSSW--NATVSQ----SGNTVTVTNP-SWNGTIA---   71 (101)
T ss_dssp             EEEEEEEESSSEEEEEEEEEESSS-STEESEEEEEEESTTEEEEEEE--SCEEEE----ETTEEEEEES-STCSEEE---
T ss_pred             EEEEEecccCCCeEEEEEEEECCC-CccCCEEEEEEeCCCCEEeeee--ccEEEe----cCCEEEEEcC-CcCcccC---
Confidence            455677889999999999999663 6777999999998644455554  444211    1245666654 3443332   


Q ss_pred             CCCceeEEEEEeecCCCcccccCCCCceeeEEcCCcc
Q 040362          283 PYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC  319 (356)
Q Consensus       283 ~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGdeC  319 (356)
                       +|.- ..+-|.=..     ....+-|..+-|||..|
T Consensus        72 -~G~s-~~~Gf~~~~-----~~~~~~p~~~t~ng~~C  101 (101)
T PF00553_consen   72 -PGGS-VTFGFQASG-----SGSSAAPSTCTVNGAPC  101 (101)
T ss_dssp             -ESEE-EEEEEEEEE-----SSS--SESEEEETTEEE
T ss_pred             -CCCe-EEEEEEEeC-----CCCCCCCcEEEEcCeeC
Confidence             2322 234444331     22334599999999998

2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
1exg_A	110	EXO-1,4-beta-D-glycanase; cellulose binding domain	93.86
3ndz_E	107	Endoglucanase D; cellotriose, xylanase, carbohydra	92.9
2cwr_A	103	Chitinase; chitin-binding domain, endoglucanase, h	92.45
1e5b_A	87	Xylanase D; hydrolase, xylan binding domain, beta-	92.44
3icg_A	515	Endoglucanase D; cellulase, xylanase, carbohydrate	91.53
1heh_C	88	Endo-1,4-beta-xylanase D; hydrolase(xylan degradat	83.84

>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A

Probab=93.86  E-value=0.2  Score=41.00  Aligned_cols=85  Identities=21%  Similarity=0.324  Sum_probs=55.7

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCeeeecCCccccccCCCeEEeCCCCCCCCcee
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQF   84 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC~~~k~~~p~~C~k~P~IvDL~P~~~~d~qi   84 (356)
                      .+||.|.|||.|.-- .-|+  ||+|.|+...++-|-++..|..+..|.=...              -.    ..+|..|
T Consensus        18 ~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~~~g~~i~~~Wna~~s~sG~~vt~--------------~n----~~wN~~l   76 (110)
T 1exg_A           18 NTGFTANVTVKNTSS-APVD--GWTLTFSFPSGQQVTQAWSSTVTQSGSAVTV--------------RN----APWNGSI   76 (110)
T ss_dssp             SSEEEEEEEEEECSS-SCEE--SEEEEEECSSSCEEEEEESSEEEEETTEEEE--------------EE----CSGGGEE
T ss_pred             CCCEEEEEEEEeCCC-Cccc--ceEEEEEcCCCcEEecccceEEEccCCEEEE--------------ec----cccccee
Confidence            478999999999643 2354  9999999999988888888877664431111              11    2356666


Q ss_pred             e--eeEEEEEEEeecCCCCCcccCCcCeEEeC
Q 040362           85 I--YIVAKVLRVGLSGTSNKTVRLPKNFYIFG  114 (356)
Q Consensus        85 ~--s~s~FQm~Vg~~~~~n~t~~~P~nf~l~~  114 (356)
                      +  +..+|=++....+.    -..|.+|+|.|
T Consensus        77 a~G~s~~fGf~~~~~g~----~~~Pt~~~lnG  104 (110)
T 1exg_A           77 PAGGTAQFGFNGSHTGT----NAAPTAFSLNG  104 (110)
T ss_dssp             CSSEEEEEEEEEECSSS----CCCCSCEEETT
T ss_pred             CCCcEEEEEEEEeCCCC----CCCCceEEEcC
Confidence            6  33344444433332    24689999976

>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*

Probab=92.90  E-value=0.16  Score=41.81  Aligned_cols=85  Identities=24%  Similarity=0.335  Sum_probs=55.8

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCeeeecCCccccccCCCeEEeCCCCCCCCcee
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQF   84 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC~~~k~~~p~~C~k~P~IvDL~P~~~~d~qi   84 (356)
                      .+||.|.|||.|.-- .-|+  ||+|+|+...++-|-++..|..+..|.=...+                  ...+|..|
T Consensus        14 ~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~------------------n~~wN~~l   72 (107)
T 3ndz_E           14 GSGASVNVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVASGTTLSVT------------------NAGYNGTI   72 (107)
T ss_dssp             SSEEEEEEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEETTEEEEE------------------ECSTTCEE
T ss_pred             CCCEEEEEEEEeCCC-Cccc--CcEEEEEcCCCCEEecccceEEEecCCEEEEE------------------ECCccccc
Confidence            469999999999643 2354  99999999999999999999776544311111                  01244455


Q ss_pred             ee---eEEEEEEEeecCCCCCcccCCcCeEEeC
Q 040362           85 IY---IVAKVLRVGLSGTSNKTVRLPKNFYIFG  114 (356)
Q Consensus        85 ~s---~s~FQm~Vg~~~~~n~t~~~P~nf~l~~  114 (356)
                      ++   ..+|=++....+.    -..|.+|+|.|
T Consensus        73 a~~G~s~~fGf~g~~~G~----~~~P~~~~lnG  101 (107)
T 3ndz_E           73 AANGGTQSFGFNINYSGV----LSKPTGFTVNG  101 (107)
T ss_dssp             CTTTEEEEEEEEEEECSS----CCCCSCCEETT
T ss_pred             CCCCccEEEEEEEeCCCC----CCCCcEEEECC
Confidence            43   3344444444433    35799999976

>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A

Probab=92.45  E-value=0.24  Score=40.56  Aligned_cols=43  Identities=21%  Similarity=0.122  Sum_probs=36.5

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCC
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGD   53 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgd   53 (356)
                      .+||.|.|||.|.-    +  .||+|.|++..++=|-++..|..+..|.
T Consensus        20 ~~Gf~~~vtVtN~g----~--~gWtv~~~~~~g~~it~~Wna~~s~sg~   62 (103)
T 2cwr_A           20 GSGAEYDVTLNLDG----Q--YDWTVKVKLAPGATVGSFWSANKQEGNG   62 (103)
T ss_dssp             SSEEEEEEEEEESS----C--CCCEEEEEECTTCEEEEEESEEEEEETT
T ss_pred             CCceEEEEEEeCCC----C--CcEEEEEECCCCcEEecccceEEecCCC
Confidence            47999999999983    3  4999999999999999999998876554

>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A

Probab=92.44  E-value=0.086  Score=41.92  Aligned_cols=41  Identities=20%  Similarity=0.381  Sum_probs=34.4

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCC
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGD   53 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgd   53 (356)
                      .+||.|.|+|.|      +  .||+|.|+...++=|-++..|..+..|.
T Consensus        14 ~~Gf~~~vtVtn------~--~gWtv~~~~~~g~~i~~~Wn~~~s~sg~   54 (87)
T 1e5b_A           14 SDGFNVTYSVSG------S--SAWTVNLALNGSQTIQASWNANVTGSGS   54 (87)
T ss_dssp             SSEEEEEEBCCS------C--SSCCCEEECCTTCCEEEEESBCCEESSS
T ss_pred             CCCEEEEEEEEc------c--CceEEEEEcCCCCEEeeeeceeEecCCC
Confidence            379999999998      4  5999999999999888888887766554

>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C

Probab=83.84  E-value=0.77  Score=36.54  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=34.6

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCe
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDC   54 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC   54 (356)
                      .+||.|.|||.     + +  .||+|.|++..++=|-++..|..+..|.-
T Consensus        15 ~~Gf~a~vtVt-----g-~--~gWtv~~~~~~gq~vt~~Wna~~s~sg~~   56 (88)
T 1heh_C           15 ADRFNVTYSVS-----G-S--SSWVVTLGLNGGQSVQSSWNAALTGSSGT   56 (88)
T ss_dssp             SSEEEEEEECS-----S-C--CSCCCEEECCSSCCCCCEESSEEECSSSE
T ss_pred             CCceEEEEEEe-----c-c--ccEEEEEECCCCCEEEccccccCccCCCE
Confidence            38999999998     3 3  59999999999999988888877765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1exha_	110	Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce	95.59
d1e5ba_	87	Endo-1,4-beta xylanase D, xylan binding domain, XB	93.17
d1hehc_	88	Endo-1,4-beta xylanase D, xylan binding domain, XB	93.14

>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=95.59  E-value=0.0076  Score=47.98  Aligned_cols=86  Identities=22%  Similarity=0.355  Sum_probs=59.4

Q ss_pred             ccCCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCeeeecCCccccccCCCeEEeCCCCCCCCc
Q 040362            3 WTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQ   82 (356)
Q Consensus         3 wt~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC~~~k~~~p~~C~k~P~IvDL~P~~~~d~   82 (356)
                      | .+||.|.|||.|.-. .-|+  ||+|+|++..+|-|-++.+|..+..|+=..+                  -...+|.
T Consensus        17 W-~~Gf~~~vtVtN~~~-~~~~--gW~v~~~~p~g~~i~~~Wna~~~~~G~~vtv------------------~~~~wN~   74 (110)
T d1exha_          17 W-NTGFTANVTVKNTSS-APVD--GWTLTFSFPSGQQVTQAWSSTVTQSGSAVTV------------------RNAPWNG   74 (110)
T ss_dssp             C-SSCEEEEEEEEECSS-SCEE--SEEEEEECSSCCEEEEEESSEEEEETTEEEE------------------EECSSTT
T ss_pred             C-CCCcEEEEEEEeCCC-Cccc--CcEEEEECCCCCEEeeeeceEEEecCCEEEE------------------eCCcccC
Confidence            5 479999999999876 5565  9999999999999999999987665542221                  1133566


Q ss_pred             eeeeeEE--EEEEEeecCCCCCcccCCcCeEEeC
Q 040362           83 QFIYIVA--KVLRVGLSGTSNKTVRLPKNFYIFG  114 (356)
Q Consensus        83 qi~s~s~--FQm~Vg~~~~~n~t~~~P~nf~l~~  114 (356)
                      .|++-++  |=++.-..+    +...|.+|+|.|
T Consensus        75 ~i~~G~s~~fGF~~~~~g----~~~~P~~~~lNG  104 (110)
T d1exha_          75 SIPAGGTAQFGFNGSHTG----TNAAPTAFSLNG  104 (110)
T ss_dssp             EECSSEECCEEEEEECCS----SCCSCSEEEETT
T ss_pred             ccCCCCEEEEEEEeeCCC----CCCCCcEEEEcC
Confidence            6663332  433333322    345689999976

>d1e5ba_ b.2.2.1 (A:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Endo-1,4-beta xylanase D, xylan binding domain, XBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=93.17  E-value=0.028  Score=43.17  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCC
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGD   53 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgd   53 (356)
                      .+||.|+|||.|      ++  ||+|.|+...++-|-++.+|..+..|.
T Consensus        14 ~~Gf~a~vtVtn------~~--gWtv~~~~~~g~~I~~~Wn~~~s~sG~   54 (87)
T d1e5ba_          14 SDGFNVTYSVSG------SS--AWTVNLALNGSQTIQASWNANVTGSGS   54 (87)
T ss_dssp             SSEEEEEEBCCS------CS--SCCCEEECCTTCCEEEEESBCCEESSS
T ss_pred             CCCEEEEEEEEe------cC--CCEEEEECCCCCEEEcccceEEecCCC
Confidence            479999999988      33  999999999999999999998777654

>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Endo-1,4-beta xylanase D, xylan binding domain, XBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=93.14  E-value=0.027  Score=43.28  Aligned_cols=42  Identities=14%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCe
Q 040362            5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDC   54 (356)
Q Consensus         5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC   54 (356)
                      .+||.|+|+|.|.      .  ||+|.|+...+|=|-++.+|.-+.+|.=
T Consensus        15 ~~Gf~a~vtVtn~------s--gWtv~~t~p~g~~i~~~Wna~~s~sg~~   56 (88)
T d1hehc_          15 ADRFNVTYSVSGS------S--SWVVTLGLNGGQSVQSSWNAALTGSSGT   56 (88)
T ss_dssp             SSEEEEEEECSSC------C--SCCCEEECCSSCCCCCEESSEEECSSSE
T ss_pred             CCCeEEEEEEEeC------C--CCEEEEECCCCCEEEccccceEccCCCE
Confidence            5799999999983      3  9999999999999999999887665543