Citrus Sinensis ID: 040431

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFIYFWGRTLNTGRRYR
Secondary Structure (PSIPRED)
cccccEEEEEccccccHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHcccccEEEEcccccHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccEEEEEccHHHHHHHHHHHHHHHHHccccccccccHHHHEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREstisgpsksqLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEaegasrgtlrtqkgkmsslssemTTTLDMLEMTELIDQKIFIYFWgrtlntgrryr
Flexible Loop (DISEMBL)
MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKeaegasrgtlrtqkgkmsslssEMTTTLDMLEMTELIDQKifiyfwgrtlntgrryr
Low Complexity Region (SEG)
MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVkiiaaikeaeGASRGTLRTQKGKmsslssemtttldmlemtelIDQKIFIYFWGRTLNTGRRYR
Disordered region (IsUnstruct)
******ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG**KSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIK***************************LDMLEMTELIDQKIFIYFWGRTLN******
Disordered Region (DISOPRED)
**SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST******SQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFIYFWGRTLNT*****
Disordered Region (DISEMBL)
MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGA*****************EMTTTLDMLEMTELIDQKIFIYFWGRTLNTGRRYR
Disordered Region (DISPRO)
***KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFIYFWGRTLNTGRR*R
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFIYFWGRTLNTGRRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
P52578	308	Isoflavone reductase homo	N/A	no	0.681	0.347	0.766	4e-40
E1U332	308	Isoflavone reductase-like	N/A	no	0.681	0.347	0.700	2e-35
P52579	310	Isoflavone reductase homo	N/A	no	0.681	0.345	0.644	7e-33
P52577	310	Isoflavone reductase homo	no	no	0.662	0.335	0.673	2e-31
P52575	318	Isoflavone reductase OS=M	N/A	no	0.649	0.320	0.513	7e-24
Q00016	318	Isoflavone reductase OS=C	N/A	no	0.681	0.336	0.516	5e-23
P52580	309	Isoflavone reductase homo	N/A	no	0.681	0.346	0.509	8e-23
P52576	318	Isoflavone reductase OS=P	N/A	no	0.681	0.336	0.466	2e-21
Q15GI4	314	Eugenol synthase 1 OS=Oci	N/A	no	0.636	0.318	0.490	2e-19
Q15GI3	323	Isoeugenol synthase 1 OS=	N/A	no	0.662	0.321	0.457	6e-18

>sp|P52578|IFRH_SOLTU Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 91/107 (85%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA KSKILFIGGTGYIGKF VEAS KAGH TFVLVREST+S P+K++L+D FK+ GV  V
Sbjct: 1   MAGKSKILFIGGTGYIGKFIVEASAKAGHDTFVLVRESTLSNPTKTKLIDTFKSFGVTFV 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            GD+ +HESLVKAIKQVDVVISTVGH LLADQVK+IAAIKEA    R
Sbjct: 61  HGDLYDHESLVKAIKQVDVVISTVGHALLADQVKLIAAIKEAGNVKR 107

Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|E1U332|ALL12_OLEEU Isoflavone reductase-like protein OS=Olea europaea PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 84/107 (78%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA K+KIL IGGTGYIGKF VEAS K+ HPTF L RESTIS P K +++  FKN GV ++
Sbjct: 1   MADKTKILIIGGTGYIGKFIVEASAKSEHPTFALARESTISDPVKGKIIQGFKNSGVTIL 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            GD+ +HESLVKAIKQVDVVISTVG   LADQVKIIAAIKEA    R
Sbjct: 61  TGDLYDHESLVKAIKQVDVVISTVGQLQLADQVKIIAAIKEAGNVKR 107

Olea europaea (taxid: 4146)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P52579|IFRH_TOBAC Isoflavone reductase homolog A622 OS=Nicotiana tabacum PE=2 SV=1

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 81/107 (75%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           ++ KSKIL IGGTGYIGK+ VE S K+GHPTF L+REST+  P KS+L+D FK+ GV L+
Sbjct: 3   VSEKSKILIIGGTGYIGKYLVETSAKSGHPTFALIRESTLKNPEKSKLIDTFKSYGVTLL 62

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            GD+ N ESL+KAIKQVDVVISTVG     DQV II AIKEA    R
Sbjct: 63  FGDISNQESLLKAIKQVDVVISTVGGQQFTDQVNIIKAIKEAGNIKR 109

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P52577|IFRH_ARATH Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 81/104 (77%)

Query: 4   KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
           KSKIL IGGTGYIGKF VEAS KAGH TF LVRE+T+S P K + +  FK+LGV ++ GD
Sbjct: 5   KSKILVIGGTGYIGKFLVEASAKAGHSTFALVREATLSDPVKGKTVQSFKDLGVTILHGD 64

Query: 64  VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           + +HESLVKAIKQVDVVISTVG   + DQ KII+AIKEA    R
Sbjct: 65  LNDHESLVKAIKQVDVVISTVGSMQILDQTKIISAIKEAGNVKR 108

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P52575|IFR_MEDSA Isoflavone reductase OS=Medicago sativa GN=IFR PE=1 SV=1

 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 82/113 (72%), Gaps = 11/113 (9%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES----------TISGP-SKSQLL 49
           MA+++KIL +G TG IG+  V AS+KAG+PT+ LVR++          T + P +K +L+
Sbjct: 1   MATENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTPGNVNKPKLITAANPETKEELI 60

Query: 50  DHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
           D++++LGV L+ GD+ +HE+LVKAIKQVD+VI   G  L+ DQVKII AIKEA
Sbjct: 61  DNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEA 113

Reduces achiral isoflavones to chiral isoflavanones during the biosynthesis of chiral pterocarpan phytoalexins. The reduction product is a third isomer, which represents the penultimate intermediate in the synthesis of the phytoalexin (-)-medicarpin, the major phytoalexin in Alfalfa.

Medicago sativa (taxid: 3879)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|Q00016|IFR_CICAR Isoflavone reductase OS=Cicer arietinum GN=IFR PE=1 SV=1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 79/118 (66%), Gaps = 11/118 (9%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST--ISGPS---------KSQLL 49
           MAS+++IL +G TG IG+  V AS+KAG+PT+ L+R++   I+ PS         K +LL
Sbjct: 1   MASQNRILVLGPTGAIGRHVVWASIKAGNPTYALIRKTPGDINKPSLVAAANPESKEELL 60

Query: 50  DHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
             FK  GV L+ GD+ +HE+LVKAIKQVD VI T G  L+ DQVKII AIKEA    R
Sbjct: 61  QSFKAAGVILLEGDMNDHEALVKAIKQVDTVICTFGRLLILDQVKIIKAIKEAGNVKR 118

Reduces achiral isoflavones to chiral isoflavanones during the biosynthesis of chiral pterocarpan phytoalexins.

Cicer arietinum (taxid: 3827)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays GN=IRL PE=2 SV=1

 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)

Query: 1   MAS-KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNL 59
           MAS KSKIL +GGTGY+G+  V AS + GHPT  LVR++  S P+K+ LL  F++ GV L
Sbjct: 1   MASEKSKILVVGGTGYLGRHVVAASARLGHPTSALVRDTAPSDPAKAALLKSFQDAGVTL 60

Query: 60  VIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           + GD+ +  SLV A+K  DVVIS +G   +ADQ +++ AIKEA    R
Sbjct: 61  LKGDLYDQASLVSAVKGADVVISVLGSMQIADQSRLVDAIKEAGNVKR 108

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P52576|IFR_PEA Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 11/118 (9%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST--ISGP---------SKSQLL 49
           MA+++KIL +G TG IG+  V AS+KAG+PT+ LVR+++  ++ P         +K +LL
Sbjct: 1   MATENKILILGATGAIGRHIVWASIKAGNPTYALVRKTSDNVNKPKLTEAANPETKEELL 60

Query: 50  DHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            +++  GV L+ GD+ +HE+LV AIKQVD VI   G  L+ DQVK+I AIKEA    R
Sbjct: 61  KNYQASGVILLEGDINDHETLVNAIKQVDTVICAAGRLLIEDQVKVIKAIKEAGNVKR 118

Reduces achiral isoflavones to chiral isoflavanones during the biosynthesis of chiral pterocarpan phytoalexins. The reduction product (sophrol) is a third isomer, which represents the penultimate intermediate in the synthesis of the phytoalexin (+)-pisatin, the major phytoalexin in pea.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|Q15GI4|EGS1_OCIBA Eugenol synthase 1 OS=Ocimum basilicum GN=EGS1 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 68/104 (65%), Gaps = 4/104 (3%)

Query: 4   KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
           KSKIL  GGTGYIG   V+ S+K GHPT+V  R ++    SK+ LLD F++LG  +V G+
Sbjct: 7   KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 62

Query: 64  VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           +  HE LV+ +K+VDVVIS +    + DQ KI+ AIK A    R
Sbjct: 63  LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKR 106

Catalyzes the synthesis of the phenylpropene eugenol from coniferyl acetate. Phenylpropenes are produced by plants as defense compounds with antimicrobial and antianimal properties, or as floral attractants of pollinators. Eugenol is a characteristic aromatic constituent of spices.

Ocimum basilicum (taxid: 39350)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 1

EC: 8

>sp|Q15GI3|IGS1_PETHY Isoeugenol synthase 1 OS=Petunia hybrida GN=IGS1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 4   KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE-STISGPSKSQLLDHFKNLGVNLVIG 62
           K KIL +G TGY+GK+ V+AS+  GHPT+  V      S  SK QLL  F++LGV +  G
Sbjct: 5   KGKILILGATGYLGKYMVKASISLGHPTYAYVMPLKKNSDDSKLQLLKEFESLGVTIFYG 64

Query: 63  DVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           ++  H+ LV   K+VD+VIST+      +Q+K+I AIKEA    R
Sbjct: 65  ELSEHDKLVAVFKEVDIVISTLAVPQYLEQLKVIEAIKEAGNIKR 109

Catalyzes the synthesis of the phenylpropene isoeugenol from coniferyl acetate. Phenylpropenes are produced by plants as defense compounds with antimicrobial and antianimal properties, or as floral attractants of pollinators. Isoeugenol is a characteristic aromatic constituent of spices.

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
388499526	310	unknown [Medicago truncatula]	0.681	0.345	0.757	2e-38
1708422	308	RecName: Full=Isoflavone reductase homol	0.681	0.347	0.766	2e-38
255640090	310	unknown [Glycine max]	0.636	0.322	0.8	3e-38
351726399	310	isoflavone reductase homolog 2 [Glycine	0.636	0.322	0.8	3e-38
118486357	306	unknown [Populus trichocarpa]	0.656	0.336	0.766	5e-38
3243234	308	isoflavone reductase related protein [Py	0.681	0.347	0.738	8e-38
6525021	310	isoflavone reductase-like NAD(P)H-depend	0.681	0.345	0.738	1e-37
255637547	310	unknown [Glycine max]	0.636	0.322	0.79	1e-37
124488476	308	phenylcoumaran benzylic ether reductase-	0.681	0.347	0.728	6e-37
224105373	306	phenylcoumaran benzylic ether reductase	0.656	0.336	0.757	8e-37

>gi|388499526|gb|AFK37829.1| unknown [Medicago truncatula]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 90/107 (84%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA KSKILFIGGTGYIGK  VEAS KAGHPTF LVREST++ P+K+ LL++FK LGVNLV
Sbjct: 1   MAEKSKILFIGGTGYIGKHIVEASAKAGHPTFALVRESTLADPAKANLLNNFKTLGVNLV 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            GD+ NHE+LVKAIKQVDVVISTVGH  + DQVKIIAAIKEA    R
Sbjct: 61  PGDLYNHENLVKAIKQVDVVISTVGHAQIEDQVKIIAAIKEAGNVKR 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708422|sp|P52578.1|IFRH_SOLTU RecName: Full=Isoflavone reductase homolog; AltName: Full=CP100 gi|1030068|emb|CAA63056.1| NAD(P)H oxidoreductase, isoflavone reductase homologue [Solanum tuberosum]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 91/107 (85%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA KSKILFIGGTGYIGKF VEAS KAGH TFVLVREST+S P+K++L+D FK+ GV  V
Sbjct: 1   MAGKSKILFIGGTGYIGKFIVEASAKAGHDTFVLVRESTLSNPTKTKLIDTFKSFGVTFV 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            GD+ +HESLVKAIKQVDVVISTVGH LLADQVK+IAAIKEA    R
Sbjct: 61  HGDLYDHESLVKAIKQVDVVISTVGHALLADQVKLIAAIKEAGNVKR 107

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640090|gb|ACU20336.1| unknown [Glycine max]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 90/100 (90%)

Query: 3   SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIG 62
           SKSKILFIGGTGYIGKF VEAS KAGHPTF+LVREST+S P+KS L+D+FK LGVNLV+G
Sbjct: 5   SKSKILFIGGTGYIGKFIVEASAKAGHPTFLLVRESTLSNPAKSPLIDNFKGLGVNLVLG 64

Query: 63  DVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
           D+ +H+SLV AIKQVDVVISTVGH  LADQ KII+AIKEA
Sbjct: 65  DLYDHQSLVSAIKQVDVVISTVGHLQLADQDKIISAIKEA 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726399|ref|NP_001237637.1| isoflavone reductase homolog 2 [Glycine max] gi|6573171|gb|AAF17578.1|AF202184_1 isoflavone reductase homolog 2 [Glycine max]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 90/100 (90%)

Query: 3   SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIG 62
           SKSKILFIGGTGYIGKF VEAS KAGHPTF+LVREST+S P+KS L+D+FK LGVNLV+G
Sbjct: 5   SKSKILFIGGTGYIGKFIVEASAKAGHPTFLLVRESTLSNPAKSPLIDNFKGLGVNLVLG 64

Query: 63  DVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
           D+ +H+SLV AIKQVDVVISTVGH  LADQ KII+AIKEA
Sbjct: 65  DLYDHQSLVSAIKQVDVVISTVGHLQLADQDKIISAIKEA 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486357|gb|ABK95019.1| unknown [Populus trichocarpa]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 89/103 (86%)

Query: 5   SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
           SKILFIGGTGYIGKF VEAS KAGHPTFVLVREST+S P+KS ++D+FKNLGVN +IGD+
Sbjct: 3   SKILFIGGTGYIGKFIVEASAKAGHPTFVLVRESTLSNPAKSVVIDNFKNLGVNFLIGDL 62

Query: 65  LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            +HESLVKAIKQVDVVISTVGH  L +Q +IIAAIKEA    R
Sbjct: 63  FDHESLVKAIKQVDVVISTVGHAQLVEQDRIIAAIKEAGNVKR 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3243234|gb|AAC24001.1| isoflavone reductase related protein [Pyrus communis]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 94/107 (87%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MASKS+ILFIGGTGYIGKF VEAS KAG+PT+VLVRE+++S P+KS+++++FK LGVN V
Sbjct: 1   MASKSQILFIGGTGYIGKFIVEASAKAGYPTYVLVREASLSDPAKSKVIENFKALGVNFV 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           +GD+ +HESLVKAIKQVDVVISTVGH  LADQ KIIAAIKEA    R
Sbjct: 61  LGDLYDHESLVKAIKQVDVVISTVGHGQLADQGKIIAAIKEAGNVKR 107

Source: Pyrus communis

Species: Pyrus communis

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6525021|gb|AAF15291.1|AF201458_1 isoflavone reductase-like NAD(P)H-dependent oxidoreductase [Medicago sativa]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 90/107 (84%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA KSKILFIGGTGYIGK  VEAS KAGHPTF LVREST++ P+K+ LL++FK LGVNLV
Sbjct: 1   MAEKSKILFIGGTGYIGKHIVEASAKAGHPTFALVRESTLADPAKANLLNNFKTLGVNLV 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            GD+ +H++LVK IKQVDVVISTVGH L+ DQVKIIAAIKEA    R
Sbjct: 61  PGDLYDHQNLVKVIKQVDVVISTVGHALIEDQVKIIAAIKEAGNVKR 107

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637547|gb|ACU19100.1| unknown [Glycine max]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 89/100 (89%)

Query: 3   SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIG 62
           SKSKILFIGGTGYIGKF VEAS KAGHPTF+LVREST+S P+KS L+D+FK LGVNLV+G
Sbjct: 5   SKSKILFIGGTGYIGKFIVEASAKAGHPTFLLVRESTLSNPAKSPLIDNFKGLGVNLVLG 64

Query: 63  DVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
           D+ +H+SLV AIKQVDVVISTVGH  LADQ KII+A KEA
Sbjct: 65  DLYDHQSLVSAIKQVDVVISTVGHLQLADQDKIISATKEA 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124488476|gb|ABN12322.1| phenylcoumaran benzylic ether reductase-like protein [Gossypium hirsutum]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 89/107 (83%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA KSK+L IGGTGY+GKF VEAS K GHPTFV VREST+S P K +L+D+FKNLGV+L+
Sbjct: 1   MAEKSKVLIIGGTGYLGKFIVEASAKEGHPTFVFVRESTVSDPVKGKLVDNFKNLGVHLL 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           +GD+ +HESLVKAIKQVDVVIS VG   LADQVKIIAAIKEA    R
Sbjct: 61  LGDMYDHESLVKAIKQVDVVISVVGQMQLADQVKIIAAIKEAGNVKR 107

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105373|ref|XP_002313788.1| phenylcoumaran benzylic ether reductase 3 [Populus trichocarpa] gi|222850196|gb|EEE87743.1| phenylcoumaran benzylic ether reductase 3 [Populus trichocarpa]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 88/103 (85%)

Query: 5   SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
           SKILFIGGTGYIGKF VEAS KAGHPTFVLVREST+S P+KS ++ +FKNLGVN +IGD+
Sbjct: 3   SKILFIGGTGYIGKFIVEASAKAGHPTFVLVRESTLSNPAKSVVIYNFKNLGVNFLIGDL 62

Query: 65  LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            +HESLVKAIKQVDVVISTVGH  L +Q +IIAAIKEA    R
Sbjct: 63  FDHESLVKAIKQVDVVISTVGHAQLVEQDRIIAAIKEAGNVKR 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2136383	308	AT4G39230 [Arabidopsis thalian	0.585	0.298	0.663	9.1e-29
TAIR|locus:2025192	310	AT1G75280 [Arabidopsis thalian	0.585	0.296	0.677	1.5e-26
TAIR|locus:2025167	322	AT1G75300 [Arabidopsis thalian	0.566	0.276	0.651	3.2e-26
TAIR|locus:2025197	318	AT1G75290 [Arabidopsis thalian	0.585	0.289	0.634	7.6e-25
TAIR|locus:2016482	310	AT1G19540 [Arabidopsis thalian	0.515	0.261	0.629	3.9e-21
TAIR|locus:2119455	317	PRR2 "pinoresinol reductase 2"	0.515	0.255	0.469	3e-13
TAIR|locus:2031730	317	PRR1 "pinoresinol reductase 1"	0.515	0.255	0.456	1.8e-12
TAIR|locus:2139494	306	AT4G34540 [Arabidopsis thalian	0.535	0.274	0.415	1e-11
ASPGD|ASPL0000047359	312	AN8968 [Emericella nidulans (t	0.560	0.282	0.273	2.9e-06
TAIR|locus:2180019	417	PCB2 "PALE-GREEN AND CHLOROPHY	0.471	0.177	0.365	2.1e-05

TAIR|locus:2136383 AT4G39230 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 61/92 (66%), Positives = 76/92 (82%)

Query:     1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
             M SKSKILFIGGTGYIGK+ VEAS ++GHPT VLVR ST++ PS+S  +++FKNLGV  +
Sbjct:     1 MTSKSKILFIGGTGYIGKYIVEASARSGHPTLVLVRNSTLTSPSRSSTIENFKNLGVQFL 60

Query:    61 IGDVLNHESLVKAIKQVDVVISTVGHTLLADQ 92
             +GD+ +H SLV +IKQ DVVISTVGH+LL  Q
Sbjct:    61 LGDLDDHTSLVNSIKQADVVISTVGHSLLGHQ 92

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0032442 "phenylcoumaran benzylic ether reductase activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2025192 AT1G75280 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 63/93 (67%), Positives = 74/93 (79%)

Query:     1 MAS-KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNL 59
             MA+ KSKIL IGGTGYIGKF VEAS KAGH TF LVRE+T+S P K + +  FK+LGV +
Sbjct:     1 MATEKSKILVIGGTGYIGKFLVEASAKAGHSTFALVREATLSDPVKGKTVQSFKDLGVTI 60

Query:    60 VIGDVLNHESLVKAIKQVDVVISTVGHTLLADQ 92
             + GD+ +HESLVKAIKQVDVVISTVG   + DQ
Sbjct:    61 LHGDLNDHESLVKAIKQVDVVISTVGSMQILDQ 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP

TAIR|locus:2025167 AT1G75300 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query:     4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
             KSKIL IGGTGY+G+F VE S KAG+PTF LVRE+++S P KS+ +  FK+LGV ++ GD
Sbjct:     5 KSKILVIGGTGYMGEFIVEGSAKAGNPTFALVREASLSDPVKSKTIQSFKDLGVTILHGD 64

Query:    64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
             + +HESLVKAIKQVDVVIST+GH  + DQ
Sbjct:    65 LNDHESLVKAIKQVDVVISTIGHKQIFDQ 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=ISS

TAIR|locus:2025197 AT1G75290 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 59/93 (63%), Positives = 73/93 (78%)

Query:     1 MAS-KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNL 59
             MAS KSKIL IGGTG+IGK  +EASVKAGH T  LVRE+++S P+K + + +FK+ GV L
Sbjct:     1 MASEKSKILVIGGTGHIGKLIIEASVKAGHSTLALVREASLSDPNKGKTVQNFKDFGVTL 60

Query:    60 VIGDVLNHESLVKAIKQVDVVISTVGHTLLADQ 92
             + GD+ +HESLVKAIKQ DVVISTVG   + DQ
Sbjct:    61 LHGDLNDHESLVKAIKQADVVISTVGSMQILDQ 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=ISS

TAIR|locus:2016482 AT1G19540 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query:     5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
             SKIL IG TG IGK  VE S K+GH TF LVRE+++S P K+QL++ FK+LGV ++ G +
Sbjct:     3 SKILVIGATGLIGKVLVEESAKSGHATFALVREASLSDPVKAQLVERFKDLGVTILYGSL 62

Query:    65 LNHESLVKAIKQVDVVISTVG 85
              + ESLVKAIKQVDVVIS VG
Sbjct:    63 SDKESLVKAIKQVDVVISAVG 83

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2119455 PRR2 "pinoresinol reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query:     4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
             K+++L +GGTG +G+  V A +  GH T+VL R        K QLL  FK LG +LV G 
Sbjct:     9 KTRVLVVGGTGSLGRRIVSACLAEGHETYVLQRPEIGVDIEKVQLLLSFKRLGAHLVEGS 68

Query:    64 VLNHESLVKAIKQVDVVISTV 84
               +H+SLV A+KQVDVV+S +
Sbjct:    69 FSDHQSLVSAVKQVDVVVSAM 89

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0010283 "pinoresinol reductase activity" evidence=ISS;IDA

GO:0009807 "lignan biosynthetic process" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031730 PRR1 "pinoresinol reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 37/81 (45%), Positives = 49/81 (60%)

Query:     4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
             K+++L +G TGYIGK  V A +  GH T+VL R        K QL   FK LG  +V G 
Sbjct:     9 KTRVLVVGATGYIGKRIVRACLAEGHETYVLQRPEIGLEIEKVQLFLSFKKLGARIVEGS 68

Query:    64 VLNHESLVKAIKQVDVVISTV 84
               +H+SLV A+K VDVV+S +
Sbjct:    69 FSDHQSLVSAVKLVDVVVSAM 89

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0010283 "pinoresinol reductase activity" evidence=ISS;IDA

GO:0009807 "lignan biosynthetic process" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2139494 AT4G34540 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 37/89 (41%), Positives = 55/89 (61%)

Query:     4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
             KS++L IG TG +G +    S+++GHPTF L+R +T+S   KS L D     GV L+ G 
Sbjct:     7 KSRVLIIGATGRLGNYLTRFSIESGHPTFALIRNTTLSDKLKS-LSD----AGVTLLKGS 61

Query:    64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
             + +  SL +A+ +VDVVIS +    + DQ
Sbjct:    62 LEDEGSLAEAVSKVDVVISAIPSKHVLDQ 90

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0010283 "pinoresinol reductase activity" evidence=ISS

ASPGD|ASPL0000047359 AN8968 [Emericella nidulans (taxid:162425)]

 Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 26/95 (27%), Positives = 53/95 (55%)

Query:     3 SKSKILFIGGTGYIGKFTVEASVKAGHPTF----VLVRESTISGPSKSQLLDHFKNLGVN 58
             +KS +L  G TG IG + + A++      F    +   +ST++   K++ ++  +   V+
Sbjct:     2 TKSNLLIFGATGAIGSY-ITAAITDARDEFGRIGIFTSQSTLT--KKTKEINALREKAVD 58

Query:    59 LVIGDVLNHESLVKAIKQVDVVISTVGHTLLADQV 93
             +++GDV + + ++KA    D V+S +G  ++A QV
Sbjct:    59 ILVGDVTSKDEVLKAFDGFDTVVSALGRGVIAQQV 93

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2180019 PCB2 "PALE-GREEN AND CHLOROPHYLL B REDUCED 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 30/82 (36%), Positives = 44/82 (53%)

Query:     7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRE-STISGPSKSQLLDHFKNL-GVNLVIGDV 64
             +L +G TGYIG+F V+  +K G     + RE S I G +  +  +  K L G N+   DV
Sbjct:    86 VLVVGSTGYIGRFVVKEMIKRGFNVIAVAREKSGIRGKNDKE--ETLKQLQGANVCFSDV 143

Query:    65 LNHESLVKAIKQ----VDVVIS 82
                + L K+I+     VDVV+S
Sbjct:   144 TELDVLEKSIENLGFGVDVVVS 165

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP;TAS

GO:0051744 "3,8-divinyl protochlorophyllide a 8-vinyl reductase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PCBER3 SubName- Full=Putative uncharacterized protein; (307 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam05368	232	pfam05368, NmrA, NmrA-like family	8e-33
cd05259	282	cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe	2e-23
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	1e-13
PLN02657	390	PLN02657, PLN02657, 3,8-divinyl protochlorophyllid	1e-12
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	8e-12
cd05244	207	cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu	1e-11
cd05269	272	cd05269, TMR_SDR_a, triphenylmethane reductase (TM	4e-10
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	1e-09
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	5e-09
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	1e-08
cd05267	203	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	3e-07
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	3e-07
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	6e-07
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	1e-06
COG2910	211	COG2910, COG2910, Putative NADH-flavin reductase [	3e-06
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	2e-05
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	3e-05
pfam03435	380	pfam03435, Saccharop_dh, Saccharopine dehydrogenas	3e-05
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	5e-05
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	6e-05
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	7e-05
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	9e-05
cd05231	259	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript	1e-04
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	2e-04
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	4e-04
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	5e-04
cd05229	302	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3	0.002
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	0.003

>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family

 Score =  115 bits (291), Expect = 8e-33
 Identities = 47/99 (47%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
           IL  G TGY G   V AS+KAGHP   LVR+       KS+L    K  GV LV GD+ +
Sbjct: 1   ILVFGATGYQGGSVVRASLKAGHPVRALVRDP------KSELAKSLKAAGVELVEGDLDD 54

Query: 67  HESLVKAIKQVDVVISTVG---HTLLADQVKIIAAIKEA 102
           HESLV+A+K VDVV S  G      + D  K+  A KEA
Sbjct: 55  HESLVEALKGVDVVFSVTGFWLSKEIEDGKKLADAAKEA 93

NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232

>gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs

 Score = 92.4 bits (230), Expect = 2e-23
 Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 6   KILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
           KI   G TG +G   V A + + G    VL R S+ S          F+  GV +V  D 
Sbjct: 1   KIAIAGATGTLGGPIVSALLASPGFTVTVLTRPSSTSSN-------EFQPSGVKVVPVDY 53

Query: 65  LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
            +HESLV A+K VD VIS +G   + DQ+K+I A   A
Sbjct: 54  ASHESLVAALKGVDAVISALGGAAIGDQLKLIDAAIAA 91

PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           K+L +G TG +G+  V   +  G+    LVR+     PS+++ L+     G  +V+GD+ 
Sbjct: 1   KVLVVGATGKVGRHVVRELLDRGYQVRALVRD-----PSQAEKLEA---AGAEVVVGDLT 52

Query: 66  NHESLVKAIKQVDVVISTVG-------HTLLADQVKIIAAIKEAEGA 105
           + ESL  A++ +D VIS  G        T   D    I  I  A+ A
Sbjct: 53  DAESLAAALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKA 99

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 2   ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE-STISG-PSKSQLLDHFKNLGVNL 59
                +L +G TGYIGKF V   V+ G+    + RE S I G   K          G  +
Sbjct: 58  PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELP--GAEV 115

Query: 60  VIGDVLNHESLVKAIKQ----VDVVIS 82
           V GDV + +SL K +      VDVV+S
Sbjct: 116 VFGDVTDADSLRKVLFSEGDPVDVVVS 142

Length = 390

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 59.7 bits (145), Expect = 8e-12
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
           IL +G TG+IG+      ++ GH   +LVR         ++ L       V +V GD+ +
Sbjct: 1   ILILGATGFIGRALARELLEQGHEVTLLVR--------NTKRLSKEDQEPVAVVEGDLRD 52

Query: 67  HESLVKAIKQVDVVISTVG------HTLLAD---QVKIIAAIKEA 102
            +SL  A++ VDVVI   G           D      ++ A KEA
Sbjct: 53  LDSLSDAVQGVDVVIHLAGAPRDTRDFCEVDVEGTRNVLEAAKEA 97

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           KI  IG TG  G   V  ++  GH    LVR         ++L    + L   +V GDVL
Sbjct: 1   KIAIIGATGRTGSAIVREALARGHEVTALVR-------DPAKLPAEHEKL--KVVQGDVL 51

Query: 66  NHESLVKAIKQVDVVISTVG-------HTLLADQVK-IIAAIKEAE 103
           + E + +A++  D VIS +G        TL ++  + I++A+K A 
Sbjct: 52  DLEDVKEALEGQDAVISALGTRNDLSPTTLHSEGTRNIVSAMKAAG 97

Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207

>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
           IL  G TG +G   VE  +        LVR      P K++    F   GV +  GD  +
Sbjct: 1   ILVTGATGKLGTAVVELLLAKVASVVALVRN-----PEKAKA---FAADGVEVRQGDYDD 52

Query: 67  HESLVKAIKQVDVV--ISTVGHTLLADQVKIIAAIKEA 102
            E+L +A + VD +  IS         Q K    I  A
Sbjct: 53  PETLERAFEGVDRLLLISPSDLEDRIQQHK--NFIDAA 88

TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 7  ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
          IL  G TG++G   V A +  G+    LVR       S + LLD    L V +V GD+ +
Sbjct: 1  ILVTGATGFLGSNLVRALLAQGYRVRALVRSG-----SDAVLLDG---LPVEVVEGDLTD 52

Query: 67 HESLVKAIKQVDVVISTVGHT 87
            SL  A+K  D V      T
Sbjct: 53 AASLAAAMKGCDRVFHLAAFT 73

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
           I  IG TG  G+  V+  +  GH    L R      PSK+         GV  V  D+ +
Sbjct: 1   IAVIGATGKTGRRLVKELLARGHQVTALSR-----NPSKAPA------PGVTPVQKDLFD 49

Query: 67  HESLVKAIKQVDVVISTVG-HTLLADQVK-IIAAIKEA 102
              L +A+  VD V+   G     +D VK ++ A   A
Sbjct: 50  LADLAEALAGVDAVVDAFGARPDDSDGVKHLLDAAARA 87

Length = 182

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 14/96 (14%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          KIL IGGT +IGK  VE  + AGH   V  R     G +K  L +     GV  ++GD  
Sbjct: 2  KILIIGGTRFIGKALVEELLAAGHDVTVFNR-----GRTKPDLPE-----GVEHIVGDRN 51

Query: 66 NHESLVKAIK--QVDVVISTVGHTLLADQVKIIAAI 99
          + ++L + +     DVV+ T+ +T    QV+     
Sbjct: 52 DRDALEELLGGEDFDVVVDTIAYT--PRQVERALDA 85

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|187577 cd05267, SDR_a6, atypical (a) SDRs, subgroup 6

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           K+L +G  G I +   EA+      + V   E T+   +  +LL H K+  V +V GD L
Sbjct: 2   KVLILGANGEIAR---EATTMLLENSNV---ELTLFLRNAHRLL-HLKSARVTVVEGDAL 54

Query: 66  NHESLVKAIKQVDVVISTVGHTLLADQVK-IIAAIKEA 102
           N + L  A++  DVV + +G T L  Q + ++ A+K  
Sbjct: 55  NSDDLKAAMRGQDVVYANLGGTDLDQQAENVVQAMKAV 92

These atypical SDR family members of unknown function have only a partial match to a prototypical glycine-rich NAD(P)-binding motif consensus, GXXG, which conserves part of the motif of extended SDR. Furthermore, they lack the characteristic active site residues of the SDRs. This subgroup is related to phenylcoumaran benzylic ether reductase, an NADPH-dependent aromatic alcohol reductase. One member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 20/144 (13%)

Query: 5   SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
            KIL  G TG++G   V   +  GH     VR      P  +  L      GV +V+GD+
Sbjct: 1   MKILVTGATGFVGGAVVRELLARGHEVRAAVR-----NPEAAAALA----GGVEVVLGDL 51

Query: 65  LNHESLVKAIKQVDVVISTVG------HTLLADQVKIIAAIKEAEGASRGTLRTQKGKMS 118
            + +SLV   K VD V+   G               ++ A + A     G        +S
Sbjct: 52  RDPKSLVAGAKGVDGVLLISGLLDGSDAFRAVQVTAVVRAAEAA-----GAGVKHGVSLS 106

Query: 119 SLSSEMTTTLDMLEMTELIDQKIF 142
            L ++  +   +      ++  + 
Sbjct: 107 VLGADAASPSALARAKAAVEAALR 130

Length = 275

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          K+L  GG GYIG  TV   ++AG+   VL   S        + L   + + +    GD+ 
Sbjct: 1  KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSN----GHREALPRIEKIRIEFYEGDIR 56

Query: 66 NHESLVKAIKQ--VDVVI 81
          +  +L K   +  +D VI
Sbjct: 57 DRAALDKVFAEHKIDAVI 74

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG-VNLVIGDV 64
           +   G TG+IG++ V    K G    V  R       + ++ L    +LG V  V  D+
Sbjct: 2  VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRC-----EAYARRLLVMGDLGQVLFVEFDL 56

Query: 65 LNHESLVKAIKQVDVVISTVG 85
           + ES+ KA++  DVVI+ VG
Sbjct: 57 RDDESIRKALEGSDVVINLVG 77

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           KI  IG +G  G   ++ ++K GH    +VR       SK          GV ++  D+ 
Sbjct: 2   KIAIIGASGKAGSRILKEALKRGHEVTAIVRN-----ASKLAARQ-----GVTILQKDIF 51

Query: 66  NHESLVKAIKQVDVVISTVGHTL---LADQVKIIAAIKEA 102
           +  SL   +   D VIS  G           K I A+ EA
Sbjct: 52  DLTSLASDLAGHDAVISAFGAGASDNDELHSKSIEALIEA 91

Length = 211

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          K+   G TG+IG   V   V AGH    L R    S    ++L    +  G  +  GD+ 
Sbjct: 2  KVFVTGATGFIGSAVVRELVAAGHEVVGLAR----SDAGAAKL----EAAGAQVHRGDLE 53

Query: 66 NHESLVKAIKQVDVVIST 83
          + + L KA  + D VI  
Sbjct: 54 DLDILRKAAAEADAVIHL 71

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          KIL  GG GYIG  TV   +++GH   +L     +S  S+  L    +   V  V GD+ 
Sbjct: 1  KILVTGGAGYIGSHTVRQLLESGHEVVIL---DNLSNGSREALPRGERITPVTFVEGDLR 57

Query: 66 NHESL--VKAIKQVDVVI 81
          + E L  +    ++D VI
Sbjct: 58 DRELLDRLFEEHKIDAVI 75

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKS---QLLDHFKNLGVNLVIGD 63
           +L IG  G +G+       + G     +         S      L      L    +  D
Sbjct: 1   VLIIGA-GGVGQGVAPLLARHGDLEITVA------DRSLEKAQALAAPKLGLRFIAIAVD 53

Query: 64  VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIK 100
             N+E+LV  +K+ D+VI+     L    +K  A I+
Sbjct: 54  ADNYEALVALLKEGDLVINLAPPFLSLTVLK--ACIE 88

This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 7  ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
          +L  G TGY+G   V   ++ GH    LVR       S  +L D   +  V +V GD+ +
Sbjct: 1  VLVTGATGYVGGRLVPRLLQEGHQVRALVR-------SPEKLADRPWSERVTVVRGDLED 53

Query: 67 HESLVKAIKQVDVVISTVGHTLLA 90
           ESL  A++ +D     V H++ +
Sbjct: 54 PESLRAALEGIDTAYYLV-HSMGS 76

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          K+L  GG GYIG  TV   +K GH   VL   S                L      GD+L
Sbjct: 2  KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGH-------KIALLKLQFKFYEGDLL 54

Query: 66 NHESLVKAIK--QVDVVI 81
          +   L    +  ++D V+
Sbjct: 55 DRALLTAVFEENKIDAVV 72

Length = 329

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          K+L  G TG++G   V   ++ G    VLVR       S  + L+    L V +V GD+ 
Sbjct: 2  KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRP-----TSDRRNLE---GLDVEIVEGDLR 53

Query: 66 NHESLVKAIKQVDVVISTVGHTLL 89
          +  SL KA+     +        L
Sbjct: 54 DPASLRKAVAGCRALFHVAADYRL 77

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 7  ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
          IL  GGTG+IG   V   ++ G+   VL R                    +    GD+ +
Sbjct: 1  ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSES---------LNTGRIRFHEGDLTD 51

Query: 67 HESLVKAIK--QVDVVI 81
           ++L + +   Q D VI
Sbjct: 52 PDALERLLAEVQPDAVI 68

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 12/100 (12%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
           IL  G TG IG       ++AG P   LVR        +          G  +V+GD+ +
Sbjct: 1   ILVTGATGRIGSKVATTLLEAGRPVRALVR-----SDER---AAALAARGAEVVVGDLDD 52

Query: 67  HESLVKAIKQVDVVISTV----GHTLLADQVKIIAAIKEA 102
              L  A+  VD V                V+   A   A
Sbjct: 53  PAVLAAALAGVDAVFFLAPPAPTADARPGYVQAAEAFASA 92

Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          +IL  GG G+IG   VE  + AGH    L R      P  S         GV  V+ D+ 
Sbjct: 2  RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLS---------GVEFVVLDLT 52

Query: 66 NHESLVKAIKQV-DVVI 81
          + + + +  K V D VI
Sbjct: 53 DRDLVDELAKGVPDAVI 69

Length = 314

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          ++L +GG G+IG   V+A ++ G    V           +S         GV+ + GD  
Sbjct: 1  RVLIVGGNGFIGSHLVDALLEEGPQVRVF---------DRSIPPYELPLGGVDYIKGDYE 51

Query: 66 NHESLVKAIKQVDVVISTVGHTLLADQ 92
          N   L  A+  +D VI     T  A  
Sbjct: 52 NRADLESALVGIDTVIHLASTTNPATS 78

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 8  LFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGV-NLVIGDVLN 66
          L  GG G++G+  V   ++ G    V V +   S     +LL+ F  L V   + GDV +
Sbjct: 1  LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFS----PELLEDFSKLQVITYIEGDVTD 56

Query: 67 HESLVKAIKQVDVVISTVG 85
           + L +A++  DVVI T  
Sbjct: 57 KQDLRRALQGSDVVIHTAA 75

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 10/80 (12%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
              +G +G IG+       + G    ++ R       SK   L   +     +V  D +
Sbjct: 1  TAHVLGASGPIGREVARELRRRGWDVRLVSR-----SGSKLAWLPGVE-----IVAADAM 50

Query: 66 NHESLVKAIKQVDVVISTVG 85
          +  S++ A +  DV+     
Sbjct: 51 DASSVIAAARGADVIYHCAN 70

These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           +L  G  G+IG    E  ++ GH    L      +  +   LLD+  +   + + GDV 
Sbjct: 1  NVLVTGADGFIGSHLTERLLREGHEVRALDI---YNSFNSWGLLDNAVHDRFHFISGDVR 57

Query: 66 NHESLVKAIKQVDVVI 81
          +   +   +K+ DVV 
Sbjct: 58 DASEVEYLVKKCDVVF 73

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.92
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.9
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.89
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.89
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.87
PLN00198	338	anthocyanidin reductase; Provisional	99.86
PLN02650	351	dihydroflavonol-4-reductase	99.86
PLN02572	442	UDP-sulfoquinovose synthase	99.85
PLN02427	386	UDP-apiose/xylose synthase	99.84
PLN02214	342	cinnamoyl-CoA reductase	99.84
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.84
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.84
PLN02653	340	GDP-mannose 4,6-dehydratase	99.84
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.83
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.83
CHL00194	317	ycf39 Ycf39; Provisional	99.83
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.83
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.83
PLN02240	352	UDP-glucose 4-epimerase	99.83
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.82
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.82
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.82
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.82
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.82
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.82
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.82
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.81
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.81
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.8
PLN02686	367	cinnamoyl-CoA reductase	99.8
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.8
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.79
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.79
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.79
PRK06180	277	short chain dehydrogenase; Provisional	99.79
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.78
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.78
PLN02260	668	probable rhamnose biosynthetic enzyme	99.78
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.78
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.78
PRK06482	276	short chain dehydrogenase; Provisional	99.78
PLN02206	442	UDP-glucuronate decarboxylase	99.78
PRK05993	277	short chain dehydrogenase; Provisional	99.77
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.77
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.77
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.77
PLN02583	297	cinnamoyl-CoA reductase	99.76
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.76
PLN03209	576	translocon at the inner envelope of chloroplast su	99.76
PRK06179	270	short chain dehydrogenase; Provisional	99.75
PRK06194	287	hypothetical protein; Provisional	99.75
PRK06182	273	short chain dehydrogenase; Validated	99.75
PRK09186	256	flagellin modification protein A; Provisional	99.75
PRK08263	275	short chain dehydrogenase; Provisional	99.75
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.75
PRK07201	657	short chain dehydrogenase; Provisional	99.75
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.74
PRK09291	257	short chain dehydrogenase; Provisional	99.74
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.74
PRK07806	248	short chain dehydrogenase; Provisional	99.74
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.74
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.73
PRK07024	257	short chain dehydrogenase; Provisional	99.73
PRK10538	248	malonic semialdehyde reductase; Provisional	99.73
PRK07825	273	short chain dehydrogenase; Provisional	99.72
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.72
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.72
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.72
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.72
PLN02996	491	fatty acyl-CoA reductase	99.71
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK08219	227	short chain dehydrogenase; Provisional	99.71
PRK08267	260	short chain dehydrogenase; Provisional	99.71
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.71
PRK06197	306	short chain dehydrogenase; Provisional	99.71
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.71
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.71
PLN00016	378	RNA-binding protein; Provisional	99.71
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.71
PRK08339	263	short chain dehydrogenase; Provisional	99.71
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.7
PRK05866	293	short chain dehydrogenase; Provisional	99.7
PRK07102	243	short chain dehydrogenase; Provisional	99.7
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.7
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.7
PRK08251	248	short chain dehydrogenase; Provisional	99.7
PRK05717	255	oxidoreductase; Validated	99.7
PRK06138	252	short chain dehydrogenase; Provisional	99.7
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.7
PRK07454	241	short chain dehydrogenase; Provisional	99.7
PRK06196	315	oxidoreductase; Provisional	99.69
PRK06914	280	short chain dehydrogenase; Provisional	99.69
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.69
PRK07063	260	short chain dehydrogenase; Provisional	99.69
PRK06398	258	aldose dehydrogenase; Validated	99.69
PRK07478	254	short chain dehydrogenase; Provisional	99.69
PRK07109	334	short chain dehydrogenase; Provisional	99.69
PRK07774	250	short chain dehydrogenase; Provisional	99.68
PRK05876	275	short chain dehydrogenase; Provisional	99.68
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.68
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.68
PRK07023	243	short chain dehydrogenase; Provisional	99.68
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.68
PRK08265	261	short chain dehydrogenase; Provisional	99.68
PRK07814	263	short chain dehydrogenase; Provisional	99.68
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.68
PRK05854	313	short chain dehydrogenase; Provisional	99.68
PRK05650	270	short chain dehydrogenase; Provisional	99.68
PRK06841	255	short chain dehydrogenase; Provisional	99.68
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.68
PRK07904	253	short chain dehydrogenase; Provisional	99.67
PRK05875	276	short chain dehydrogenase; Provisional	99.67
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.67
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.67
PRK07890	258	short chain dehydrogenase; Provisional	99.67
PRK06523	260	short chain dehydrogenase; Provisional	99.67
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.67
PRK12827	249	short chain dehydrogenase; Provisional	99.67
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.67
PRK07067	257	sorbitol dehydrogenase; Provisional	99.67
PRK12746	254	short chain dehydrogenase; Provisional	99.67
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.67
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.67
PRK07775	274	short chain dehydrogenase; Provisional	99.67
PRK08643	256	acetoin reductase; Validated	99.67
PRK12828	239	short chain dehydrogenase; Provisional	99.67
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.67
PRK09135	249	pteridine reductase; Provisional	99.67
PRK07062	265	short chain dehydrogenase; Provisional	99.67
PRK06139	330	short chain dehydrogenase; Provisional	99.67
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.67
PRK06114	254	short chain dehydrogenase; Provisional	99.66
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.66
PRK08589	272	short chain dehydrogenase; Validated	99.66
PLN02253	280	xanthoxin dehydrogenase	99.66
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.66
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.66
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.66
PRK08264	238	short chain dehydrogenase; Validated	99.66
PRK07577	234	short chain dehydrogenase; Provisional	99.66
PRK06128	300	oxidoreductase; Provisional	99.66
PRK12939	250	short chain dehydrogenase; Provisional	99.66
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.66
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.66
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.65
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.65
PRK07326	237	short chain dehydrogenase; Provisional	99.65
PRK07074	257	short chain dehydrogenase; Provisional	99.65
PRK05693	274	short chain dehydrogenase; Provisional	99.65
PLN02778	298	3,5-epimerase/4-reductase	99.65
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.65
PRK06172	253	short chain dehydrogenase; Provisional	99.65
PRK07060	245	short chain dehydrogenase; Provisional	99.65
PRK07856	252	short chain dehydrogenase; Provisional	99.65
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.65
PRK05865	854	hypothetical protein; Provisional	99.64
PRK05867	253	short chain dehydrogenase; Provisional	99.64
PRK07985	294	oxidoreductase; Provisional	99.64
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.64
PRK09242	257	tropinone reductase; Provisional	99.64
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.64
PRK08226	263	short chain dehydrogenase; Provisional	99.64
PRK06500	249	short chain dehydrogenase; Provisional	99.64
PRK12320	699	hypothetical protein; Provisional	99.64
PRK08177	225	short chain dehydrogenase; Provisional	99.64
PRK12937	245	short chain dehydrogenase; Provisional	99.63
PRK12743	256	oxidoreductase; Provisional	99.63
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.63
PRK07069	251	short chain dehydrogenase; Validated	99.63
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.63
PRK08017	256	oxidoreductase; Provisional	99.63
PRK06701	290	short chain dehydrogenase; Provisional	99.63
PRK06101	240	short chain dehydrogenase; Provisional	99.63
PRK08628	258	short chain dehydrogenase; Provisional	99.63
PRK06924	251	short chain dehydrogenase; Provisional	99.63
PRK09072	263	short chain dehydrogenase; Provisional	99.63
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.63
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.63
PRK06057	255	short chain dehydrogenase; Provisional	99.63
PRK09134	258	short chain dehydrogenase; Provisional	99.62
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.62
PRK08278	273	short chain dehydrogenase; Provisional	99.62
PRK12829	264	short chain dehydrogenase; Provisional	99.62
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.62
PRK07035	252	short chain dehydrogenase; Provisional	99.62
PRK12747	252	short chain dehydrogenase; Provisional	99.62
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.62
PRK05855	582	short chain dehydrogenase; Validated	99.62
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.62
PLN02503	605	fatty acyl-CoA reductase 2	99.61
PRK05872	296	short chain dehydrogenase; Provisional	99.61
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.61
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.61
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.61
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.6
PRK06949	258	short chain dehydrogenase; Provisional	99.6
PRK05599	246	hypothetical protein; Provisional	99.6
KOG1208	314	consensus Dehydrogenases with different specificit	99.6
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.6
PRK06483	236	dihydromonapterin reductase; Provisional	99.6
PRK06181	263	short chain dehydrogenase; Provisional	99.6
PRK07201	657	short chain dehydrogenase; Provisional	99.6
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.6
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.6
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.6
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.59
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.59
PRK06125	259	short chain dehydrogenase; Provisional	99.58
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.58
PRK07677	252	short chain dehydrogenase; Provisional	99.58
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.58
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.58
PRK07832	272	short chain dehydrogenase; Provisional	99.58
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.58
PRK05884	223	short chain dehydrogenase; Provisional	99.57
PRK06198	260	short chain dehydrogenase; Provisional	99.57
PLN02780	320	ketoreductase/ oxidoreductase	99.57
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.57
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.57
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.57
PRK07576	264	short chain dehydrogenase; Provisional	99.57
PRK06484	520	short chain dehydrogenase; Validated	99.57
PRK07041	230	short chain dehydrogenase; Provisional	99.57
PRK12744	257	short chain dehydrogenase; Provisional	99.57
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.57
PRK06123	248	short chain dehydrogenase; Provisional	99.57
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.56
PRK08703	239	short chain dehydrogenase; Provisional	99.56
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.56
PRK07791	286	short chain dehydrogenase; Provisional	99.56
PRK12742	237	oxidoreductase; Provisional	99.56
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.56
PRK07831	262	short chain dehydrogenase; Provisional	99.56
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.55
PRK06484	520	short chain dehydrogenase; Validated	99.55
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.55
PRK08324	681	short chain dehydrogenase; Validated	99.54
PRK08862	227	short chain dehydrogenase; Provisional	99.54
PRK06953	222	short chain dehydrogenase; Provisional	99.54
PRK08303	305	short chain dehydrogenase; Provisional	99.54
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.53
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.53
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.53
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.53
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.53
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.52
PRK12367	245	short chain dehydrogenase; Provisional	99.52
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.52
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.52
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.52
PLN02260	668	probable rhamnose biosynthetic enzyme	99.52
COG2910	211	Putative NADH-flavin reductase [General function p	99.51
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.51
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.51
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.51
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.5
PRK06940	275	short chain dehydrogenase; Provisional	99.5
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.5
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.5
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.49
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.49
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.48
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.48
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.48
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.47
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.47
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.46
PLN00015	308	protochlorophyllide reductase	99.46
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.46
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.46
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.45
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.45
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.43
COG1028	251	FabG Dehydrogenases with different specificities (	99.42
PRK07578	199	short chain dehydrogenase; Provisional	99.42
KOG0725	270	consensus Reductases with broad range of substrate	99.41
PRK08309	177	short chain dehydrogenase; Provisional	99.36
PRK06720	169	hypothetical protein; Provisional	99.35
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.35
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	99.34
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.34
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.32
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.28
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.27
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.24
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.15
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.15
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.14
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.13
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	99.12
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.09
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.09
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	99.06
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.01
PTZ00325	321	malate dehydrogenase; Provisional	98.93
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.9
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.86
PRK09620	229	hypothetical protein; Provisional	98.84
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	98.84
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.82
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	98.81
PLN00106	323	malate dehydrogenase	98.81
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.8
KOG2774	366	consensus NAD dependent epimerase [General functio	98.74
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.71
COG3268	382	Uncharacterized conserved protein [Function unknow	98.61
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.59
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.58
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.55
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	98.51
PRK05086	312	malate dehydrogenase; Provisional	98.51
PRK14982	340	acyl-ACP reductase; Provisional	98.48
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.44
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	98.42
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.42
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	98.41
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.41
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.4
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	98.38
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	98.36
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.35
PRK09496	453	trkA potassium transporter peripheral membrane com	98.35
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	98.34
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.34
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.33
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.3
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.26
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.24
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.22
PRK09496	453	trkA potassium transporter peripheral membrane com	98.18
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	98.15
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.14
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.13
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.12
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	98.09
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	98.04
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.04
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	98.03
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	98.02
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	98.02
PRK10669	558	putative cation:proton antiport protein; Provision	98.0
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.99
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.97
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.97
PRK04148	134	hypothetical protein; Provisional	97.96
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.96
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.94
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.93
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.9
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.9
KOG4288	283	consensus Predicted oxidoreductase [General functi	97.89
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.88
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.87
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.85
PLN02383	344	aspartate semialdehyde dehydrogenase	97.83
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.83
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.83
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.82
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.8
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.8
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.8
PRK05442	326	malate dehydrogenase; Provisional	97.8
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.78
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.78
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.76
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.76
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	97.76
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.75
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.75
PRK08655	437	prephenate dehydrogenase; Provisional	97.74
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.73
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.73
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.72
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.71
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.71
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.71
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	97.71
PRK06223	307	malate dehydrogenase; Reviewed	97.71
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	97.71
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.7
COG2130	340	Putative NADP-dependent oxidoreductases [General f	97.66
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.66
PRK08223	287	hypothetical protein; Validated	97.66
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.66
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.65
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.65
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.64
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	97.64
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.61
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.61
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.61
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.61
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.6
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.59
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.59
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.59
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.58
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.58
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.58
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.58
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.57
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.57
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.56
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.56
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.56
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.55
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.55
PRK15116	268	sulfur acceptor protein CsdL; Provisional	97.54
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.54
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.54
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.53
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.53
PRK10537	393	voltage-gated potassium channel; Provisional	97.52
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.52
PTZ00117	319	malate dehydrogenase; Provisional	97.51
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.51
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.49
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	97.49
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.49
PLN02602	350	lactate dehydrogenase	97.49
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.47
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.47
PRK08328	231	hypothetical protein; Provisional	97.46
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.46
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.46
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.45
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.45
PRK06849	389	hypothetical protein; Provisional	97.44
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.43
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.43
PLN00203	519	glutamyl-tRNA reductase	97.42
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.42
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.41
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.41
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.41
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	97.39
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.38
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.38
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	97.37
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.37
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	97.37
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.37
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.37
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.37
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.37
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.36
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.36
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.36
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.36
PRK14851	679	hypothetical protein; Provisional	97.36
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.35
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	97.35
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.34
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.33
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.33
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	97.32
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.32
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	97.31
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.29
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.28
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.27
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.25
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.25
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.24
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.23
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	97.23
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	97.23
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	97.23
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.23
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.23
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.22
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.22
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.21
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	97.21
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.2
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.2
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.2
PRK07417	279	arogenate dehydrogenase; Reviewed	97.19
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.18
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.17
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.17
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.17
PRK14852	989	hypothetical protein; Provisional	97.17
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.17
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.16
PLN02928	347	oxidoreductase family protein	97.14
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.13
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	97.12
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.12
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	97.11
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.11
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.11
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.11
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	97.09
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	97.09
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	97.08
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	97.06
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.05
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	97.04

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=2.7e-24  Score=158.72  Aligned_cols=135  Identities=20%  Similarity=0.297  Sum_probs=114.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+||||||.||||+|.|.+|++.|++|+++++-..+. .+.+.      ...+.++++|+.|.+.+.++|.  ++|+|+|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~-~~~v~------~~~~~f~~gDi~D~~~L~~vf~~~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGH-KIALL------KLQFKFYEGDLLDRALLTAVFEENKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCC-HHHhh------hccCceEEeccccHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999999999999999876654 22221      1126899999999999999997  6999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  141 (157)
                      +||...               +.++..|+++|.+.+ +++|||.||.++|+.....      ...|.++|+.||++.|.+
T Consensus        74 FAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g-v~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~i  152 (329)
T COG1087          74 FAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG-VKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEI  152 (329)
T ss_pred             CccccccchhhhCHHHHHhhchHhHHHHHHHHHHhC-CCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHH
Confidence            999876               677999999999999 9999999999999865431      157899999999999999


Q ss_pred             HHHHHh
Q 040431          142 FIYFWG  147 (157)
Q Consensus       142 ~~~~~~  147 (157)
                      +.++..
T Consensus       153 L~d~~~  158 (329)
T COG1087         153 LRDAAK  158 (329)
T ss_pred             HHHHHH
Confidence            666543

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.90  E-value=1.9e-22  Score=155.67  Aligned_cols=140  Identities=17%  Similarity=0.156  Sum_probs=109.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-h---hhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-D---HFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~---~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      +|+|+|||||||+|++|+++|++.|++|++++|..... ....... .   .....++.++.+|+.|.+.+.++++++|+
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~   93 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGY-QHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY   93 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcc-hhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence            68999999999999999999999999999999875432 1111111 1   11123588999999999999999999999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~  138 (157)
                      |||+|+...               +.++.++++++++.+ +++|||+||.++|+..+..      ...|.++|+.+|.+.
T Consensus        94 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~  172 (348)
T PRK15181         94 VLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH-VSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVN  172 (348)
T ss_pred             EEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeechHhhCCCCCCCCCCCCCCCCCChhhHHHHHH
Confidence            999998643               566899999999998 8999999999999753321      134677899999999


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      +.+...+
T Consensus       173 e~~~~~~  179 (348)
T PRK15181        173 ELYADVF  179 (348)
T ss_pred             HHHHHHH
Confidence            8875443

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.89  E-value=2.4e-22  Score=151.14  Aligned_cols=113  Identities=21%  Similarity=0.305  Sum_probs=98.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +++|+|||||||||+|+++.|+++||+|+.+.|++++  +.+.+.+.++.  ..++..+.+|+.|++++.+++.++|+||
T Consensus         6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~--~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf   83 (327)
T KOG1502|consen    6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPED--EKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF   83 (327)
T ss_pred             CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcch--hhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence            5899999999999999999999999999999999765  33344455554  3458999999999999999999999999


Q ss_pred             EcCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           82 STVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        82 ~~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      |.|.+..              ++++.+++++|.+.+.++|+|++||.++..
T Consensus        84 H~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~  134 (327)
T KOG1502|consen   84 HTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVR  134 (327)
T ss_pred             EeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhc
Confidence            9999976              778999999999997689999999988754

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.89  E-value=2.5e-22  Score=150.78  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=107.3

Q ss_pred             EEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcCC
Q 040431            8 LFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVG   85 (157)
Q Consensus         8 litGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a~   85 (157)
                      |||||+||+|++|+++|+++|  ++|+++++......   ...+..  .....++.+|++|++++.++++++|+|||.|+
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~--~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa   75 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQK--SGVKEYIQGDITDPESLEEALEGVDVVFHTAA   75 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhc--ccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence            699999999999999999999  78999988754321   111111  12234999999999999999999999999998


Q ss_pred             Ccc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC---C------cc---CCccchhhHhHhhhh
Q 040431           86 HTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS---S------EM---TTTLDMLEMTELIDQ  139 (157)
Q Consensus        86 ~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~---~------~~---~~~~~~~~~~~~~~~  139 (157)
                      +..              +.++++++++|++.+ +++|||+||.+++.+..   .      ..   ..+...|..+|...|
T Consensus        76 ~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~-VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~AE  154 (280)
T PF01073_consen   76 PVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG-VKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKALAE  154 (280)
T ss_pred             cccccCcccHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHHHH
Confidence            754              788999999999998 99999999999876511   0      01   246678999999999


Q ss_pred             HHHHHHHh
Q 040431          140 KIFIYFWG  147 (157)
Q Consensus       140 ~~~~~~~~  147 (157)
                      ++.+...+
T Consensus       155 ~~V~~a~~  162 (280)
T PF01073_consen  155 KAVLEANG  162 (280)
T ss_pred             HHHHhhcc
Confidence            99888766

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.87  E-value=1e-20  Score=145.63  Aligned_cols=140  Identities=13%  Similarity=0.144  Sum_probs=106.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh----cCCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF----KNLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      ++|+||||+||||++|+++|++.|++|++++|++.....+....+...    ...++.++.+|++|.+++.++++  ++|
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d   80 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT   80 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999988542211222222111    12468899999999999999998  479


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCC---ccEEEeccccccccCCC-----c-cCCccchhhHh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGA---SRGTLRTQKGKMSSLSS-----E-MTTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~---~~~v~~Ss~~~~~~~~~-----~-~~~~~~~~~~~  134 (157)
                      +|||+|+...               ..++.++++++.+.+ .   .+|||+||..+|+....     + ...+.++|+.+
T Consensus        81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~-~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~s  159 (343)
T TIGR01472        81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG-LIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAA  159 (343)
T ss_pred             EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC-CCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCChhHHH
Confidence            9999999743               336889999999876 4   38999999999975321     1 13467899999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |.+.+.+...+
T Consensus       160 K~~~e~~~~~~  170 (343)
T TIGR01472       160 KLYAHWITVNY  170 (343)
T ss_pred             HHHHHHHHHHH
Confidence            99998885433

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.86  E-value=2.1e-20  Score=143.52  Aligned_cols=140  Identities=17%  Similarity=0.203  Sum_probs=105.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +++|+||||+||||++|+++|++.|++|+++.|+....  .....+.... ..++.++.+|++|++++.++++++|+|||
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQ--KKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCH--HHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            57899999999999999999999999999998885321  1111111111 13588999999999999999999999999


Q ss_pred             cCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC----C---------------ccCCccc
Q 040431           83 TVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS----S---------------EMTTTLD  129 (157)
Q Consensus        83 ~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~----~---------------~~~~~~~  129 (157)
                      +|+...              +.++.++++++.+.+++++||++||..+|+..+    .               ....+.+
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~  166 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTW  166 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccc
Confidence            998532              445778899888763268999999998886321    0               0123567


Q ss_pred             hhhHhHhhhhHHHHHH
Q 040431          130 MLEMTELIDQKIFIYF  145 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~~  145 (157)
                      +|+.+|.+.|.+...+
T Consensus       167 ~Y~~sK~~~E~~~~~~  182 (338)
T PLN00198        167 GYPASKTLAEKAAWKF  182 (338)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            7999999998875444

>PLN02650 dihydroflavonol-4-reductase

Probab=99.86  E-value=2e-20  Score=144.44  Aligned_cols=142  Identities=18%  Similarity=0.198  Sum_probs=105.2

Q ss_pred             CCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            2 ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         2 ~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      ++.++|+||||+||||++++++|++.|++|++++|+....  .....+....  ..++.++.+|+.|.+.+.++++++|+
T Consensus         3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~   80 (351)
T PLN02650          3 SQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANV--KKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG   80 (351)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchh--HHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence            4578999999999999999999999999999999874322  1111111111  12578899999999999999999999


Q ss_pred             EEEcCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc---c-C-------------Ccc
Q 040431           80 VISTVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE---M-T-------------TTL  128 (157)
Q Consensus        80 vv~~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~---~-~-------------~~~  128 (157)
                      |||+|+...              +.++.++++++.+.+.+++|||+||.++++..+..   . +             .+.
T Consensus        81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  160 (351)
T PLN02650         81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTG  160 (351)
T ss_pred             EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccccc
Confidence            999998642              44688999999887535799999998766432110   0 0             123


Q ss_pred             chhhHhHhhhhHHHHHH
Q 040431          129 DMLEMTELIDQKIFIYF  145 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~~~  145 (157)
                      .+|+.+|.+.|.+...+
T Consensus       161 ~~Y~~sK~~~E~~~~~~  177 (351)
T PLN02650        161 WMYFVSKTLAEKAAWKY  177 (351)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            47999999998885443

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.85  E-value=5.5e-20  Score=145.99  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=104.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCC---------------chhhHhhhhcCCCeEEEEccCCChH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGP---------------SKSQLLDHFKNLGVNLVIGDVLNHE   68 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~---------------~~~~~~~~~~~~~v~~~~~D~~~~~   68 (157)
                      +|+|+||||+||||++|+++|++.|++|++++|.......               +.++.+......+++++.+|++|.+
T Consensus        47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d~~  126 (442)
T PLN02572         47 KKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICDFE  126 (442)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCCHH
Confidence            6799999999999999999999999999998753221100               0111111112246899999999999


Q ss_pred             HHHHHhc--CcCEEEEcCCCcc------------------hHHHHHHHHHHHHhcCCc-cEEEeccccccccCCC-----
Q 040431           69 SLVKAIK--QVDVVISTVGHTL------------------LADQVKIIAAIKEAEGAS-RGTLRTQKGKMSSLSS-----  122 (157)
Q Consensus        69 ~~~~~~~--~~d~vv~~a~~~~------------------~~~~~~l~~~~~~~~~~~-~~v~~Ss~~~~~~~~~-----  122 (157)
                      .+.++++  ++|+|||+|+...                  +.++.++++++++.+ ++ +||++||..+|+....     
T Consensus       127 ~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~~SS~~vYG~~~~~~~E~  205 (442)
T PLN02572        127 FLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVKLGTMGEYGTPNIDIEEG  205 (442)
T ss_pred             HHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEecceecCCCCCCCccc
Confidence            9999998  5899999996522                  456889999999987 64 8999999999975310     


Q ss_pred             --------------ccCCccchhhHhHhhhhHHHHH
Q 040431          123 --------------EMTTTLDMLEMTELIDQKIFIY  144 (157)
Q Consensus       123 --------------~~~~~~~~~~~~~~~~~~~~~~  144 (157)
                                    ....+.++|+.+|.+.+.+...
T Consensus       206 ~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~  241 (442)
T PLN02572        206 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAF  241 (442)
T ss_pred             ccccccccccccccCCCCCCCcchhHHHHHHHHHHH
Confidence                          0124567899999998777443

>PLN02427 UDP-apiose/xylose synthase

Probab=99.84  E-value=7.4e-20  Score=142.96  Aligned_cols=135  Identities=14%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhh----cCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHF----KNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      +|+|+|||||||||++|+++|+++ |++|++++|+..     +...+...    ...+++++.+|+.|.+.+.++++++|
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~-----~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND-----KIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch-----hhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            578999999999999999999998 599999988732     22222111    12468999999999999999999999


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------------------
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------------------  124 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------------------  124 (157)
                      +|||+|+...               +.++.++++++.+.+  ++|||+||..+|+......                   
T Consensus        89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~  166 (386)
T PLN02427         89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKED  166 (386)
T ss_pred             EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEeeeeeeCCCcCCCCCccccccccccccccccc
Confidence            9999998532               334778888888765  6899999999987532100                   


Q ss_pred             ---------CCccchhhHhHhhhhHHHHHH
Q 040431          125 ---------TTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       125 ---------~~~~~~~~~~~~~~~~~~~~~  145 (157)
                               ..+...|+.+|...|.+...+
T Consensus       167 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~  196 (386)
T PLN02427        167 ESPCIFGSIEKQRWSYACAKQLIERLIYAE  196 (386)
T ss_pred             ccccccCCCCccccchHHHHHHHHHHHHHH
Confidence                     012346999999998886544

>PLN02214 cinnamoyl-CoA reductase

Probab=99.84  E-value=6.5e-20  Score=141.32  Aligned_cols=140  Identities=17%  Similarity=0.162  Sum_probs=106.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +++|+||||+||||++++++|+++|++|++++|+...........+.. ...++.++.+|++|++++.++++++|+|||+
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~   88 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-GKERLILCKADLQDYEALKAAIDGCDGVFHT   88 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence            578999999999999999999999999999999743211111111111 1235888999999999999999999999999


Q ss_pred             CCCcc----------hHHHHHHHHHHHHhcCCccEEEeccc-cccccCCC----cc-----------CCccchhhHhHhh
Q 040431           84 VGHTL----------LADQVKIIAAIKEAEGASRGTLRTQK-GKMSSLSS----EM-----------TTTLDMLEMTELI  137 (157)
Q Consensus        84 a~~~~----------~~~~~~l~~~~~~~~~~~~~v~~Ss~-~~~~~~~~----~~-----------~~~~~~~~~~~~~  137 (157)
                      |+...          +.++.++++++.+.+ +++||++||. ++|+....    ..           ..+.+.|+.+|..
T Consensus        89 A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK~~  167 (342)
T PLN02214         89 ASPVTDDPEQMVEPAVNGAKFVINAAAEAK-VKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMV  167 (342)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHHHHHHH
Confidence            99754          567899999999988 8899999996 46653211    01           1245679999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .|.+...+
T Consensus       168 aE~~~~~~  175 (342)
T PLN02214        168 AEQAAWET  175 (342)
T ss_pred             HHHHHHHH
Confidence            98885544

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.84  E-value=8.4e-20  Score=142.08  Aligned_cols=135  Identities=13%  Similarity=0.128  Sum_probs=106.1

Q ss_pred             CCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            2 ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         2 ~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +..|+|+|||||||||+++++.|++.|++|++++|.....    .   .. ....+.++.+|+.|.+.+.+++.++|+||
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~----~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi   90 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEH----M---SE-DMFCHEFHLVDLRVMENCLKVTKGVDHVF   90 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccc----c---cc-ccccceEEECCCCCHHHHHHHHhCCCEEE
Confidence            4468999999999999999999999999999999864321    0   00 01135778999999999998888999999


Q ss_pred             EcCCCcc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC---------c---cCCccchhhH
Q 040431           82 STVGHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS---------E---MTTTLDMLEM  133 (157)
Q Consensus        82 ~~a~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~---------~---~~~~~~~~~~  133 (157)
                      |+|+...                ..++.++++++.+.+ +++|||+||..+|+....         +   ...+.+.|+.
T Consensus        91 h~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~-vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~  169 (370)
T PLN02695         91 NLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGL  169 (370)
T ss_pred             EcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhC-CCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHH
Confidence            9997541                446789999999988 899999999999874321         0   1346778999


Q ss_pred             hHhhhhHHHHHH
Q 040431          134 TELIDQKIFIYF  145 (157)
Q Consensus       134 ~~~~~~~~~~~~  145 (157)
                      +|...+.....+
T Consensus       170 sK~~~E~~~~~~  181 (370)
T PLN02695        170 EKLATEELCKHY  181 (370)
T ss_pred             HHHHHHHHHHHH
Confidence            999998885553

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=7.8e-20  Score=136.33  Aligned_cols=139  Identities=18%  Similarity=0.216  Sum_probs=116.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC--CCeEEEEccCCChHHHHHHhc--CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN--LGVNLVIGDVLNHESLVKAIK--QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~~~~~~~--~~d~   79 (157)
                      .++||||||.||||+|.+-+|++.|++|+++++=.... .+.++..+....  ..+.++++|+.|.+.++++|+  .+|.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~-~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~   80 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSY-LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA   80 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccc-hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence            57899999999999999999999999999998755443 455555555544  789999999999999999998  6999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-------ccCCccchhhHhHhh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-------EMTTTLDMLEMTELI  137 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-------~~~~~~~~~~~~~~~  137 (157)
                      |+|+|+.-.               +.++.++++.|++.+ .+.+||.||..+|+....       ....|.++|+.+|.+
T Consensus        81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~-~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~  159 (343)
T KOG1371|consen   81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN-VKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKA  159 (343)
T ss_pred             EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC-CceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHH
Confidence            999999866               677999999999999 999999999999986421       112488999999999


Q ss_pred             hhHHHHH
Q 040431          138 DQKIFIY  144 (157)
Q Consensus       138 ~~~~~~~  144 (157)
                      .|+...+
T Consensus       160 iE~i~~d  166 (343)
T KOG1371|consen  160 IEEIIHD  166 (343)
T ss_pred             HHHHHHh
Confidence            8888443

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.84  E-value=1.6e-19  Score=138.70  Aligned_cols=141  Identities=13%  Similarity=0.140  Sum_probs=108.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      +++|+||||+||||++++++|++.|++|++++|.+.......++.+..   .....+.++.+|++|.+++.++++  ++|
T Consensus         6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   85 (340)
T PLN02653          6 RKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKPD   85 (340)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999998754321222222211   112358899999999999999887  479


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCc-----cEEEeccccccccCCCcc-----CCccchhhH
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGAS-----RGTLRTQKGKMSSLSSEM-----TTTLDMLEM  133 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~-----~~v~~Ss~~~~~~~~~~~-----~~~~~~~~~  133 (157)
                      +|||+|+...               +.++.++++++.+.+ .+     +||++||..+|+......     ..+.+.|+.
T Consensus        86 ~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~~~~~~~~~v~~Ss~~vyg~~~~~~~E~~~~~p~~~Y~~  164 (340)
T PLN02653         86 EVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHG-QETGRQIKYYQAGSSEMYGSTPPPQSETTPFHPRSPYAV  164 (340)
T ss_pred             EEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhc-cccccceeEEEeccHHHhCCCCCCCCCCCCCCCCChhHH
Confidence            9999999743               346888999999887 54     899999998998643211     346788999


Q ss_pred             hHhhhhHHHHHH
Q 040431          134 TELIDQKIFIYF  145 (157)
Q Consensus       134 ~~~~~~~~~~~~  145 (157)
                      +|.+.+.+...+
T Consensus       165 sK~~~e~~~~~~  176 (340)
T PLN02653        165 AKVAAHWYTVNY  176 (340)
T ss_pred             HHHHHHHHHHHH
Confidence            999998885443

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.83  E-value=2e-19  Score=138.61  Aligned_cols=133  Identities=13%  Similarity=0.226  Sum_probs=102.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC-ChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL-NHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~~~~d~vv   81 (157)
                      ||+|+|||||||+|++|+++|++. |++|++++|+.     .+...+  ....++.++.+|+. +.+.+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~-----~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQT-----DRLGDL--VNHPRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcH-----HHHHHh--ccCCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            468999999999999999999986 69999999863     222111  12246899999997 7778888889999999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----c--------CCccchhhH
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----M--------TTTLDMLEM  133 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----~--------~~~~~~~~~  133 (157)
                      |+|+...               +.++.++++++++.+  .+|||+||..+|+.....     .        ..+.++|+.
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~  151 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYAC  151 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHH
Confidence            9998642               456789999999876  599999999998753221     0        123457999


Q ss_pred             hHhhhhHHHHHH
Q 040431          134 TELIDQKIFIYF  145 (157)
Q Consensus       134 ~~~~~~~~~~~~  145 (157)
                      +|.+.+.....+
T Consensus       152 sK~~~e~~~~~~  163 (347)
T PRK11908        152 SKQLMDRVIWAY  163 (347)
T ss_pred             HHHHHHHHHHHH
Confidence            999998885544

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.83  E-value=2.4e-19  Score=138.57  Aligned_cols=138  Identities=17%  Similarity=0.276  Sum_probs=104.8

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhhh-cCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDHF-KNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +.|+|+||||+||||++++++|+++|++|++++|+..     +... ...+ ...++.++.+|+.|.+++.++++++|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA-----KSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChH-----HHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            3689999999999999999999999999999988732     2221 1111 1246889999999999999999999999


Q ss_pred             EEcCCCcc----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC------cc----CC--
Q 040431           81 ISTVGHTL----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS------EM----TT--  126 (157)
Q Consensus        81 v~~a~~~~----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~------~~----~~--  126 (157)
                      ||+|+...                      ..++.++++++.+.+++++||++||.++|+..+.      ..    ..  
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            99998742                      1457788898887643689999999999864221      00    11  


Q ss_pred             --------ccchhhHhHhhhhHHHHHH
Q 040431          127 --------TLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       127 --------~~~~~~~~~~~~~~~~~~~  145 (157)
                              +..+|+.+|.+.|.+...+
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~  190 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKY  190 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHH
Confidence                    2247999999999885554

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.83  E-value=1.2e-19  Score=138.48  Aligned_cols=103  Identities=28%  Similarity=0.377  Sum_probs=87.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+|||||||+|++++++|++.|++|++++|+.     ++...+   ...+++++.+|+.|++++.++++++|+|||++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~-----~~~~~l---~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNL-----RKASFL---KEWGAELVYGDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcCh-----HHhhhH---hhcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence            4899999999999999999999999999999983     222222   23468999999999999999999999999987


Q ss_pred             CCcc----------hHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           85 GHTL----------LADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        85 ~~~~----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      +...          ..++.++++++.+.+ +++||++||.++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~g-vkr~I~~Ss~~~  113 (317)
T CHL00194         73 TSRPSDLYNAKQIDWDGKLALIEAAKAAK-IKRFIFFSILNA  113 (317)
T ss_pred             CCCCCCccchhhhhHHHHHHHHHHHHHcC-CCEEEEeccccc
Confidence            7532          456789999999998 899999999654

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.83  E-value=3.2e-19  Score=136.75  Aligned_cols=139  Identities=19%  Similarity=0.328  Sum_probs=106.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+|+||||||+||++++++|++.|++|++++|..... ......+.+....++.++.+|++|++++.+++.  ++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh   79 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSK-RSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH   79 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCch-HhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence            4899999999999999999999999999987653322 111222222233457889999999999999886  6899999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-----cc--CCccchhhHhHhhhhH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-----EM--TTTLDMLEMTELIDQK  140 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~  140 (157)
                      +|+...               +.++.++++++.+.+ +++||++||.++|+....     ..  ..+...|..+|...|.
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~  158 (338)
T PRK10675         80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQ  158 (338)
T ss_pred             CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHHH
Confidence            998643               345788999999987 889999999988864321     11  1457889999999888


Q ss_pred             HHHHH
Q 040431          141 IFIYF  145 (157)
Q Consensus       141 ~~~~~  145 (157)
                      +...+
T Consensus       159 ~~~~~  163 (338)
T PRK10675        159 ILTDL  163 (338)
T ss_pred             HHHHH
Confidence            86554

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.83  E-value=4.9e-19  Score=135.51  Aligned_cols=130  Identities=22%  Similarity=0.359  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |.+.|+|+||||+|+||++++++|++.|  ++|++++|+..     +...+ ......++.++.+|++|++++.++++++
T Consensus         1 ~~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-----~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i   75 (324)
T TIGR03589         1 MFNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-----KQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGV   75 (324)
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-----HHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcC
Confidence            4447899999999999999999999986  78999888732     22211 1222346889999999999999999999


Q ss_pred             CEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           78 DVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        78 d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+|||+||...               +.++.++++++.+.+ .++||++||....        .|..+|+.+|.+.+.+.
T Consensus        76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~-~~~iV~~SS~~~~--------~p~~~Y~~sK~~~E~l~  146 (324)
T TIGR03589        76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG-VKRVVALSTDKAA--------NPINLYGATKLASDKLF  146 (324)
T ss_pred             CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCCC--------CCCCHHHHHHHHHHHHH
Confidence            99999999642               446889999999987 7899999996432        24578999999998885


Q ss_pred             HH
Q 040431          143 IY  144 (157)
Q Consensus       143 ~~  144 (157)
                      ..
T Consensus       147 ~~  148 (324)
T TIGR03589       147 VA  148 (324)
T ss_pred             HH
Confidence            44

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02240 UDP-glucose 4-epimerase

Probab=99.83  E-value=4.8e-19  Score=136.44  Aligned_cols=140  Identities=19%  Similarity=0.215  Sum_probs=106.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh---cCCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF---KNLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      +++|+||||||++|++++++|++.|++|++++|..... ......+...   ...++.++.+|++|++++.++++  ++|
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d   83 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSS-EEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFD   83 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcch-HHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCC
Confidence            57999999999999999999999999999998764322 1111112211   12468899999999999999886  689


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELI  137 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~  137 (157)
                      +|||+|+...               +.++.++++++.+.+ .++|+++||.++|+.....      ...+...|+.+|.+
T Consensus        84 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~  162 (352)
T PLN02240         84 AVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG-CKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLF  162 (352)
T ss_pred             EEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence            9999998642               345778999998887 7899999999888643211      13456789999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .+.+...+
T Consensus       163 ~e~~~~~~  170 (352)
T PLN02240        163 IEEICRDI  170 (352)
T ss_pred             HHHHHHHH
Confidence            98885544

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.82  E-value=4.1e-19  Score=135.54  Aligned_cols=140  Identities=19%  Similarity=0.301  Sum_probs=104.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++|+|||||||||++++++|++.|++|+++.|+....  +....+...  ...++.++.+|++|++++.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDR--KKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcch--HHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            47999999999999999999999999999999975432  122211111  12468999999999999999999999999


Q ss_pred             EcCCCcc--------------hHHHHHHHHHHHHhcCCccEEEecccccc--ccCC---Cc-c-----C------Cccch
Q 040431           82 STVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKM--SSLS---SE-M-----T------TTLDM  130 (157)
Q Consensus        82 ~~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~--~~~~---~~-~-----~------~~~~~  130 (157)
                      |+|+...              +.++.++++++.+..++++||++||.+++  +..+   .. .     .      .+...
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~  162 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW  162 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccc
Confidence            9998642              45588899998885227899999998754  2211   00 0     0      12467


Q ss_pred             hhHhHhhhhHHHHHH
Q 040431          131 LEMTELIDQKIFIYF  145 (157)
Q Consensus       131 ~~~~~~~~~~~~~~~  145 (157)
                      |..+|...+.....+
T Consensus       163 Y~~sK~~aE~~~~~~  177 (322)
T PLN02986        163 YPLSKILAENAAWEF  177 (322)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999888875544

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.82  E-value=4e-19  Score=135.30  Aligned_cols=139  Identities=12%  Similarity=0.205  Sum_probs=103.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++|+|||||||||++++++|+++|++|++++|+....  .....+...  ...+++++.+|+.|++++.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDP--KKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCch--hhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            47899999999999999999999999999999874331  111111111  12468999999999999999999999999


Q ss_pred             EcCCCcc--------------hHHHHHHHHHHHHh-cCCccEEEeccccc--cccCC--Cc--c-----CCc------cc
Q 040431           82 STVGHTL--------------LADQVKIIAAIKEA-EGASRGTLRTQKGK--MSSLS--SE--M-----TTT------LD  129 (157)
Q Consensus        82 ~~a~~~~--------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~--~~~~~--~~--~-----~~~------~~  129 (157)
                      |+|+...              +.++.++++++.+. + +++||++||.++  |+..+  ..  .     ..+      ..
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~-~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~  160 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPS-VKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKL  160 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccc
Confidence            9998632              45688899998887 6 789999999864  53211  00  0     011      24


Q ss_pred             hhhHhHhhhhHHHHHH
Q 040431          130 MLEMTELIDQKIFIYF  145 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~~  145 (157)
                      .|+.+|...+.+...+
T Consensus       161 ~Y~~sK~~~E~~~~~~  176 (322)
T PLN02662        161 WYVLSKTLAEEAAWKF  176 (322)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            7899999888875544

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.82  E-value=7.9e-19  Score=135.53  Aligned_cols=140  Identities=16%  Similarity=0.198  Sum_probs=101.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhc--CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIK--QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~--~~d~v   80 (157)
                      |++|+|||||||||+++++.|++.|++++++.++....  .....+... ....+.++.+|+.|.+++.++++  ++|+|
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~V   78 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA--GNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCV   78 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc--cchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEE
Confidence            46899999999999999999999998866544332111  111111111 12357889999999999999998  48999


Q ss_pred             EEcCCCcc---------------hHHHHHHHHHHHHh--------cCCccEEEeccccccccCCC-------c-cCCccc
Q 040431           81 ISTVGHTL---------------LADQVKIIAAIKEA--------EGASRGTLRTQKGKMSSLSS-------E-MTTTLD  129 (157)
Q Consensus        81 v~~a~~~~---------------~~~~~~l~~~~~~~--------~~~~~~v~~Ss~~~~~~~~~-------~-~~~~~~  129 (157)
                      ||+||...               +.++.++++++.+.        .++++|+++||.++|+....       . ...+.+
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s  158 (355)
T PRK10217         79 MHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSS  158 (355)
T ss_pred             EECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCC
Confidence            99998753               55688899998763        12579999999988874321       1 134678


Q ss_pred             hhhHhHhhhhHHHHHH
Q 040431          130 MLEMTELIDQKIFIYF  145 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~~  145 (157)
                      .|+.+|...+.+...+
T Consensus       159 ~Y~~sK~~~e~~~~~~  174 (355)
T PRK10217        159 PYSASKASSDHLVRAW  174 (355)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            8999999988885443

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.82  E-value=3.3e-19  Score=135.06  Aligned_cols=119  Identities=24%  Similarity=0.244  Sum_probs=96.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+||||||+||||++|++.|++.| +|++++|...                   .+.+|++|++.+.++++  ++|+|||
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~~~~~~~~~~~~~D~Vih   60 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNPEGVAETVRKIRPDVIVN   60 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCHHHHHHHHHhcCCCEEEE
Confidence            489999999999999999999999 7888877621                   23589999999999988  5899999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-----c-cCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-----E-MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~  141 (157)
                      +|+...               ..++.+++++|.+.+ . ++||+||..+|+....     . ...|.++|+.+|...|.+
T Consensus        61 ~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~~E~~  138 (299)
T PRK09987         61 AAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-A-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLAGEKA  138 (299)
T ss_pred             CCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHHHHHH
Confidence            999864               345888999999987 4 7999999999865321     1 145778999999999888


Q ss_pred             HHHH
Q 040431          142 FIYF  145 (157)
Q Consensus       142 ~~~~  145 (157)
                      ...+
T Consensus       139 ~~~~  142 (299)
T PRK09987        139 LQEH  142 (299)
T ss_pred             HHHh
Confidence            5443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.82  E-value=1.3e-18  Score=122.69  Aligned_cols=106  Identities=30%  Similarity=0.476  Sum_probs=94.0

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcCCC
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGH   86 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a~~   86 (157)
                      |+|+||||++|+.++++|+++|++|++++|+     +++.+.     ..+++++.+|+.|++++.++++++|+||++++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~-----~~~~~~-----~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS-----PSKAED-----SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESS-----GGGHHH-----CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecC-----chhccc-----ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            7999999999999999999999999999999     444432     678999999999999999999999999999987


Q ss_pred             cc--hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc
Q 040431           87 TL--LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        87 ~~--~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~  123 (157)
                      ..  ....+.+++++++.+ +++++++|+.+++...+..
T Consensus        71 ~~~~~~~~~~~~~a~~~~~-~~~~v~~s~~~~~~~~~~~  108 (183)
T PF13460_consen   71 PPKDVDAAKNIIEAAKKAG-VKRVVYLSSAGVYRDPPGL  108 (183)
T ss_dssp             TTTHHHHHHHHHHHHHHTT-SSEEEEEEETTGTTTCTSE
T ss_pred             hcccccccccccccccccc-cccceeeeccccCCCCCcc
Confidence            54  566889999999998 8999999999998865543

...

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.82  E-value=8.5e-19  Score=135.28  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=105.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      +|+|+||||+||||+++++.|++.|++|++++|+.... ....+.+.  ....+.++.+|++|++++.++++  ++|+||
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTS-PNLFELLN--LAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccc-hhHHHHHh--hcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence            68999999999999999999999999999999875432 11111111  12357789999999999999988  479999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC------c-cCCccchhhHhHhhhh
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS------E-MTTTLDMLEMTELIDQ  139 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~------~-~~~~~~~~~~~~~~~~  139 (157)
                      |+|+...               +.++.++++++...+..++||++||..+|+....      . ...+.++|+.+|.+.+
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e  160 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAE  160 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHH
Confidence            9999642               4568889999887643579999999988864311      1 1356788999999998


Q ss_pred             HHHHH
Q 040431          140 KIFIY  144 (157)
Q Consensus       140 ~~~~~  144 (157)
                      .+...
T Consensus       161 ~~~~~  165 (349)
T TIGR02622       161 LVIAS  165 (349)
T ss_pred             HHHHH
Confidence            87443

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.82  E-value=1.4e-18  Score=126.56  Aligned_cols=132  Identities=26%  Similarity=0.390  Sum_probs=107.3

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEEEcC
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVISTV   84 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv~~a   84 (157)
                      |+|||||||+|+++++.|+++|++|+.++|++...     .....  ..++.++.+|+.|.+.+.++++.  +|+|||+|
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~--~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a   73 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSE-----SFEEK--KLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLA   73 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGG-----HHHHH--HTTEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccc-----ccccc--cceEEEEEeeccccccccccccccCceEEEEee
Confidence            79999999999999999999999999988884321     11111  12789999999999999999985  59999999


Q ss_pred             CCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhhhhHHHH
Q 040431           85 GHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        85 ~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  143 (157)
                      +...               +..+.++++++.+.+ .++++++||..+|+......      ..+.++|+.+|...+.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~  152 (236)
T PF01370_consen   74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-VKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLR  152 (236)
T ss_dssp             SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9862               566899999999998 78999999999998662211      3577889999999988866


Q ss_pred             HHH
Q 040431          144 YFW  146 (157)
Q Consensus       144 ~~~  146 (157)
                      .+.
T Consensus       153 ~~~  155 (236)
T PF01370_consen  153 DYA  155 (236)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            554

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.81  E-value=1.2e-18  Score=132.97  Aligned_cols=140  Identities=16%  Similarity=0.228  Sum_probs=103.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++||||+||||++++++|++.|++|++++|+.... . ....+...  ...++.++.+|++|++++.++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~-~-~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDR-K-KTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcch-h-hHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            58999999999999999999999999999988885432 1 11111111  12468899999999999999999999999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC-----C----cc--CC------ccc
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS-----S----EM--TT------TLD  129 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~-----~----~~--~~------~~~  129 (157)
                      |+|+...               ..++.++++++.+....++||++||..+|....     .    +.  ..      +..
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  162 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ  162 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence            9999642               445788899888753267999999987764321     0    00  11      135


Q ss_pred             hhhHhHhhhhHHHHHH
Q 040431          130 MLEMTELIDQKIFIYF  145 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~~  145 (157)
                      .|+.+|...|.+...+
T Consensus       163 ~Y~~sK~~~E~~~~~~  178 (325)
T PLN02989        163 WYVLSKTLAEDAAWRF  178 (325)
T ss_pred             chHHHHHHHHHHHHHH
Confidence            7999999998885554

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=9.5e-19  Score=129.16  Aligned_cols=143  Identities=17%  Similarity=0.194  Sum_probs=114.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhc--CcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIK--QVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~--~~d~   79 (157)
                      |++|||||.||||+.++++++++..  +|++++.-.-..   ..+.+.... +++..|+++|+.|.+.+.++++  ++|+
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAg---n~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~   77 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAG---NLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDA   77 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccC---CHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCe
Confidence            5799999999999999999999864  466666554322   233334333 3589999999999999999998  6999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc--------CCccchhhHhHh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM--------TTTLDMLEMTEL  136 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~--------~~~~~~~~~~~~  136 (157)
                      |+|+|+-+.               +.++.+|++++++....-||+++|+..+|++.+...        ..|.++|..+|.
T Consensus        78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKA  157 (340)
T COG1088          78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKA  157 (340)
T ss_pred             EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhh
Confidence            999999876               777999999999997224899999999999876541        578899999999


Q ss_pred             hhhHHHHHHHhcccc
Q 040431          137 IDQKIFIYFWGRTLN  151 (157)
Q Consensus       137 ~~~~~~~~~~~~~~~  151 (157)
                      +...+ ...|..+..
T Consensus       158 asD~l-Vray~~TYg  171 (340)
T COG1088         158 ASDLL-VRAYVRTYG  171 (340)
T ss_pred             hHHHH-HHHHHHHcC
Confidence            99888 555554443

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.80  E-value=1.3e-18  Score=128.35  Aligned_cols=128  Identities=14%  Similarity=0.185  Sum_probs=105.3

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-h---cCCCeEEEEccCCChHHHHHHhc---
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-F---KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~---~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      ++++++|||||++||.++++.|.++|++|+.+.|+     .++++.++. +   ....+.++.+|+++++++.++..   
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~-----~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGYNLILVARR-----EDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-----HHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH
Confidence            36799999999999999999999999999999999     777665542 2   23467899999999999988764   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          .+|++|||||+..                       +.-++.+++-+.+.+ .++|++++|.+++...     +..
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S~ag~~p~-----p~~  153 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGSAAGLIPT-----PYM  153 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechhhcCCC-----cch
Confidence                5999999999986                       333778888888887 7899999998887643     346


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..||.+-..+
T Consensus       154 avY~ATKa~v~~f  166 (265)
T COG0300         154 AVYSATKAFVLSF  166 (265)
T ss_pred             HHHHHHHHHHHHH
Confidence            7898888865544

>PLN02686 cinnamoyl-CoA reductase

Probab=99.80  E-value=2.2e-18  Score=133.96  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=102.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--------CCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--------NLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--------~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      +++|+||||+||||++++++|+++|++|+++.|+.     +..+.+....        ..++.++.+|++|++++.++++
T Consensus        53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~-----~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQ-----EDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            67999999999999999999999999999988873     2222222210        1357889999999999999999


Q ss_pred             CcCEEEEcCCCcc---------------hHHHHHHHHHHHHh-cCCccEEEecccc--ccccC---C--Ccc--------
Q 040431           76 QVDVVISTVGHTL---------------LADQVKIIAAIKEA-EGASRGTLRTQKG--KMSSL---S--SEM--------  124 (157)
Q Consensus        76 ~~d~vv~~a~~~~---------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~--~~~~~---~--~~~--------  124 (157)
                      ++|.|||+++...               +.++.++++++.+. + +++||++||..  +|+..   .  ...        
T Consensus       128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~-v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTES-VRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCC-ccEEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            9999999987532               45688899999886 6 89999999964  44321   1  000        


Q ss_pred             ---CCccchhhHhHhhhhHHHHHH
Q 040431          125 ---TTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       125 ---~~~~~~~~~~~~~~~~~~~~~  145 (157)
                         ..+...|+.+|...+.+...+
T Consensus       207 ~~~~~p~~~Y~~sK~~~E~~~~~~  230 (367)
T PLN02686        207 SFCRDNKLWYALGKLKAEKAAWRA  230 (367)
T ss_pred             hhcccccchHHHHHHHHHHHHHHH
Confidence               124457999999998885543

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.80  E-value=1.2e-18  Score=130.00  Aligned_cols=128  Identities=20%  Similarity=0.255  Sum_probs=95.2

Q ss_pred             EEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhh-hh----cCCCeE----EEEccCCChHHHHHHhc-
Q 040431            7 ILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLD-HF----KNLGVN----LVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~-~~----~~~~v~----~~~~D~~~~~~~~~~~~-   75 (157)
                      ||||||+|.||+.||++|++.+ .++++++|+     +..+..+. ++    .+.++.    .+.+|+.|.+.+..+++ 
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~-----E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~   75 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRD-----ENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE   75 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES------HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCC-----hhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence            7999999999999999999998 479999999     44443332 22    233454    45899999999999999 


Q ss_pred             -CcCEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhh
Q 040431           76 -QVDVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQ  139 (157)
Q Consensus        76 -~~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (157)
                       ++|+|||.|+.-.               +.+++++++++.+.+ +++||++||..+..        |.+.++.||...|
T Consensus        76 ~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~-v~~~v~ISTDKAv~--------PtnvmGatKrlaE  146 (293)
T PF02719_consen   76 YKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHG-VERFVFISTDKAVN--------PTNVMGATKRLAE  146 (293)
T ss_dssp             -T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--SEEEEEEECGCSS----------SHHHHHHHHHH
T ss_pred             cCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccccccCC--------CCcHHHHHHHHHH
Confidence             8999999999976               677999999999998 99999999987764        5789999999999


Q ss_pred             HHHHHHHhc
Q 040431          140 KIFIYFWGR  148 (157)
Q Consensus       140 ~~~~~~~~~  148 (157)
                      +++..+-..
T Consensus       147 ~l~~~~~~~  155 (293)
T PF02719_consen  147 KLVQAANQY  155 (293)
T ss_dssp             HHHHHHCCT
T ss_pred             HHHHHHhhh
Confidence            996555443

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.79  E-value=5.2e-18  Score=122.58  Aligned_cols=127  Identities=16%  Similarity=0.162  Sum_probs=105.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC-CCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN-LGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .+.++|||||++||.++++.|.+.|++|+...|+     .++++.++.... ..+..+..|++|.++++++++       
T Consensus         6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR-----~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g   80 (246)
T COG4221           6 GKVALITGASSGIGEATARALAEAGAKVVLAARR-----EERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFG   80 (246)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHCCCeEEEEecc-----HHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence            4679999999999999999999999999999999     888877765444 578999999999998776654       


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++|||||...                       ...++.+++.|.+.+ .++||++||+++....+     ..++|.
T Consensus        81 ~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~SiAG~~~y~-----~~~vY~  154 (246)
T COG4221          81 RIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGSIAGRYPYP-----GGAVYG  154 (246)
T ss_pred             cccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEeccccccccCC-----CCccch
Confidence            6999999999976                       555888999999998 78999999988654332     356888


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+...+
T Consensus       155 ATK~aV~~f  163 (246)
T COG4221         155 ATKAAVRAF  163 (246)
T ss_pred             hhHHHHHHH
Confidence            888866444

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.79  E-value=2.3e-18  Score=142.79  Aligned_cols=133  Identities=17%  Similarity=0.270  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH-HHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES-LVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~~~~~d~vv   81 (157)
                      +|+|+|||||||||++|+++|++. |++|++++|.+...     ..+  ....+++++.+|++|.++ +.++++++|+||
T Consensus       315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~-----~~~--~~~~~~~~~~gDl~d~~~~l~~~l~~~D~Vi  387 (660)
T PRK08125        315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAI-----SRF--LGHPRFHFVEGDISIHSEWIEYHIKKCDVVL  387 (660)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhh-----hhh--cCCCceEEEeccccCcHHHHHHHhcCCCEEE
Confidence            679999999999999999999986 79999999874321     111  112468899999998665 577888999999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-c----C--------CccchhhH
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-M----T--------TTLDMLEM  133 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-~----~--------~~~~~~~~  133 (157)
                      |+|+...               +.++.++++++.+.+  ++|||+||..+|+..... .    +        .+.+.|+.
T Consensus       388 HlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~  465 (660)
T PRK08125        388 PLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSV  465 (660)
T ss_pred             ECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHH
Confidence            9998543               456888999999986  689999999998742211 1    0        12347999


Q ss_pred             hHhhhhHHHHHH
Q 040431          134 TELIDQKIFIYF  145 (157)
Q Consensus       134 ~~~~~~~~~~~~  145 (157)
                      +|.+.|.+...+
T Consensus       466 sK~~~E~~~~~~  477 (660)
T PRK08125        466 SKQLLDRVIWAY  477 (660)
T ss_pred             HHHHHHHHHHHH
Confidence            999998885544

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.79  E-value=4.6e-18  Score=129.42  Aligned_cols=132  Identities=19%  Similarity=0.305  Sum_probs=104.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+||||+|++|+++++.|++.|++|++++|++...     .   .....++.++.+|+.|++++.++++++|+|||+|
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~---~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a   72 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR-----R---NLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA   72 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc-----c---ccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence            4799999999999999999999999999999974321     1   1123368899999999999999999999999999


Q ss_pred             CCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc--c--------CCccchhhHhHhhhhHH
Q 040431           85 GHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE--M--------TTTLDMLEMTELIDQKI  141 (157)
Q Consensus        85 ~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~  141 (157)
                      +...             +.++.++++++.+.+ ++++|++||..+|+..+..  .        ......|..+|.+.+.+
T Consensus        73 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~  151 (328)
T TIGR03466        73 ADYRLWAPDPEEMYAANVEGTRNLLRAALEAG-VERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQA  151 (328)
T ss_pred             eecccCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHHHHHH
Confidence            7542             456788999999887 8899999999888742211  1        11245789999988888


Q ss_pred             HHHH
Q 040431          142 FIYF  145 (157)
Q Consensus       142 ~~~~  145 (157)
                      ...+
T Consensus       152 ~~~~  155 (328)
T TIGR03466       152 ALEM  155 (328)
T ss_pred             HHHH
Confidence            5554

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.79  E-value=6.3e-18  Score=126.54  Aligned_cols=131  Identities=16%  Similarity=0.192  Sum_probs=98.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |+.+++++||||+|+||++++++|+++|++|++++|+     +++.+.+......++..+.+|++|++++.++++     
T Consensus         1 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~   75 (277)
T PRK06180          1 MSSMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRS-----EAARADFEALHPDRALARLLDVTDFDAIDAVVADAEAT   75 (277)
T ss_pred             CCCCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC-----HHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHH
Confidence            5546789999999999999999999999999999998     545444443334568889999999999888776     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|+|||+||...                   ..++.+++++    +.+.+ .++||++||.++....     .+...
T Consensus        76 ~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS~~~~~~~-----~~~~~  149 (277)
T PRK06180         76 FGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITSMGGLITM-----PGIGY  149 (277)
T ss_pred             hCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEecccccCCC-----CCcch
Confidence              4899999999853                   2223444444    44554 5789999998766432     24567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       150 Y~~sK~a~~~~~  161 (277)
T PRK06180        150 YCGSKFALEGIS  161 (277)
T ss_pred             hHHHHHHHHHHH
Confidence            888888776653

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.78  E-value=6e-18  Score=132.51  Aligned_cols=129  Identities=26%  Similarity=0.297  Sum_probs=97.7

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc-hhhHhhhhcCCCeEEEEccCCChHHHHHHhc----Cc
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS-KSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----QV   77 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----~~   77 (157)
                      .+++|+||||||+||++++++|+++|++|++++|+....... ..+.... ...+++++.+|++|++++.++++    ++
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~  137 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK-ELPGAEVVFGDVTDADSLRKVLFSEGDPV  137 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh-hcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            467999999999999999999999999999999985432110 0111111 12468999999999999999998    59


Q ss_pred             CEEEEcCCCcc----------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431           78 DVVISTVGHTL----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        78 d~vv~~a~~~~----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      |+|||+++...          ..++.++++++++.+ +++||++||..++.        +...|..+|...+..
T Consensus       138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~g-v~r~V~iSS~~v~~--------p~~~~~~sK~~~E~~  202 (390)
T PLN02657        138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVG-AKHFVLLSAICVQK--------PLLEFQRAKLKFEAE  202 (390)
T ss_pred             cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcC-CCEEEEEeeccccC--------cchHHHHHHHHHHHH
Confidence            99999987531          456889999999998 89999999987663        233455566655554

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.78  E-value=4.3e-18  Score=134.95  Aligned_cols=132  Identities=16%  Similarity=0.204  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .|+|+|||||||||++|+++|++.|++|++++|..... ......+  ....+++++..|+.+..     +.++|+|||+
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~-~~~~~~~--~~~~~~~~~~~Di~~~~-----~~~~D~ViHl  191 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGR-KENLVHL--FGNPRFELIRHDVVEPI-----LLEVDQIYHL  191 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcc-HhHhhhh--ccCCceEEEECcccccc-----ccCCCEEEEC
Confidence            47899999999999999999999999999999864321 1111111  12246788888987643     4679999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-----c------cCCccchhhHhHhh
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-----E------MTTTLDMLEMTELI  137 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-----~------~~~~~~~~~~~~~~  137 (157)
                      |+...               +.++.+++++|++.+ . +||++||..+|+....     +      ...+.+.|+.+|..
T Consensus       192 Aa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g-~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~  269 (436)
T PLN02166        192 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT  269 (436)
T ss_pred             ceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC-C-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHH
Confidence            98532               556899999999987 4 8999999999975321     1      11235679999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .|.+...+
T Consensus       270 aE~~~~~y  277 (436)
T PLN02166        270 AETLAMDY  277 (436)
T ss_pred             HHHHHHHH
Confidence            98886554

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.78  E-value=6.3e-18  Score=140.35  Aligned_cols=139  Identities=13%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCChHHHHHHh--cCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNHESLVKAI--KQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~--~~~d   78 (157)
                      +|+|+|||||||||++|+++|++.  +++|++++|....   .....+.. ....+++++.+|+.|.+.+..++  .++|
T Consensus         6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~---~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC---SNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc---chhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            579999999999999999999998  5789888875311   11111111 12347899999999998888766  4799


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc---------cCCccchhhHh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE---------MTTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~---------~~~~~~~~~~~  134 (157)
                      +|||+|+...               +.++.++++++++.+.+++|||+||..+|+.....         ...+.++|+.+
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s  162 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT  162 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence            9999999753               34578899999987646899999999998754321         12356789999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |...|.+...+
T Consensus       163 K~~aE~~v~~~  173 (668)
T PLN02260        163 KAGAEMLVMAY  173 (668)
T ss_pred             HHHHHHHHHHH
Confidence            99998886554

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.78  E-value=3.6e-18  Score=130.81  Aligned_cols=142  Identities=20%  Similarity=0.315  Sum_probs=110.3

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      |+++.+++||||+||+|++|+++|++.+  .+|++++..+... ....+. ..+....++++++|+.|..++.++++++ 
T Consensus         1 ~~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~-~~~~e~-~~~~~~~v~~~~~D~~~~~~i~~a~~~~-   77 (361)
T KOG1430|consen    1 MEKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQS-NLPAEL-TGFRSGRVTVILGDLLDANSISNAFQGA-   77 (361)
T ss_pred             CCcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccc-ccchhh-hcccCCceeEEecchhhhhhhhhhccCc-
Confidence            6667899999999999999999999998  7899998875422 111111 1113568999999999999999999999 


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC------cc---CCccchhhHh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS------EM---TTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~------~~---~~~~~~~~~~  134 (157)
                      .|+|+|+...               ++++++++++|.+.+ ++++||+||..+......      ..   ....+.|+.+
T Consensus        78 ~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~-v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~s  156 (361)
T KOG1430|consen   78 VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG-VKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGES  156 (361)
T ss_pred             eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhC-CCEEEEecCceEEeCCeecccCCCCCCCccccccccchH
Confidence            7777666544               778999999999999 999999999998643221      11   2334589999


Q ss_pred             HhhhhHHHHHHH
Q 040431          135 ELIDQKIFIYFW  146 (157)
Q Consensus       135 ~~~~~~~~~~~~  146 (157)
                      |...|++....=
T Consensus       157 Ka~aE~~Vl~an  168 (361)
T KOG1430|consen  157 KALAEKLVLEAN  168 (361)
T ss_pred             HHHHHHHHHHhc
Confidence            999999976654

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.78  E-value=7e-18  Score=127.63  Aligned_cols=132  Identities=23%  Similarity=0.325  Sum_probs=104.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCc-CEEEEcC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQV-DVVISTV   84 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~-d~vv~~a   84 (157)
                      +|+|||||||||++|+++|++.|++|+.++|.......     .   . .++.++.+|++|.+...+.+... |+|||+|
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~---~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a   72 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP-----L---L-SGVEFVVLDLTDRDLVDELAKGVPDAVIHLA   72 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccc-----c---c-cccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence            49999999999999999999999999999998544311     0   1 46889999999998888888877 9999999


Q ss_pred             CCcc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccC-C-----Cc--cCCccchhhHhHhhhhH
Q 040431           85 GHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL-S-----SE--MTTTLDMLEMTELIDQK  140 (157)
Q Consensus        85 ~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~-~-----~~--~~~~~~~~~~~~~~~~~  140 (157)
                      +...                +.++.++++++.+.+ +++|+|.||.++++.. +     .+  ...|.++|+.+|...|.
T Consensus        73 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~E~  151 (314)
T COG0451          73 AQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQ  151 (314)
T ss_pred             ccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHHHHH
Confidence            9874                345889999999977 8999998887766543 1     11  12334469999999999


Q ss_pred             HHHHHHh
Q 040431          141 IFIYFWG  147 (157)
Q Consensus       141 ~~~~~~~  147 (157)
                      ....+..
T Consensus       152 ~~~~~~~  158 (314)
T COG0451         152 LLRAYAR  158 (314)
T ss_pred             HHHHHHH
Confidence            8666554

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.4e-17  Score=124.41  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=99.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|++.|++|+++.|+     ++..+.+......++.++.+|++|.+++.++++       +
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRR-----PDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGR   76 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999988     544444433334578899999999998887764       4


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+||...                   +.++.++++++    ++.+ .++||++||.++....     .....|..
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~Y~~  150 (276)
T PRK06482         77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG-GGRIVQVSSEGGQIAY-----PGFSLYHA  150 (276)
T ss_pred             CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcCcccccCC-----CCCchhHH
Confidence            799999999753                   33455566664    5555 6799999997654322     34578999


Q ss_pred             hHhhhhHHHHH
Q 040431          134 TELIDQKIFIY  144 (157)
Q Consensus       134 ~~~~~~~~~~~  144 (157)
                      +|.+.+.+...
T Consensus       151 sK~a~~~~~~~  161 (276)
T PRK06482        151 TKWGIEGFVEA  161 (276)
T ss_pred             HHHHHHHHHHH
Confidence            99988766433

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.78  E-value=9.5e-18  Score=133.19  Aligned_cols=132  Identities=16%  Similarity=0.239  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .|+|+|||||||||++|+++|++.|++|++++|..... .+.  ........+++++.+|+.++.     +.++|+|||+
T Consensus       119 ~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~-~~~--~~~~~~~~~~~~i~~D~~~~~-----l~~~D~ViHl  190 (442)
T PLN02206        119 GLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGR-KEN--VMHHFSNPNFELIRHDVVEPI-----LLEVDQIYHL  190 (442)
T ss_pred             CCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccc-hhh--hhhhccCCceEEEECCccChh-----hcCCCEEEEe
Confidence            47999999999999999999999999999998753321 111  111223356888899987653     4579999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC----c-------cCCccchhhHhHhh
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS----E-------MTTTLDMLEMTELI  137 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~----~-------~~~~~~~~~~~~~~  137 (157)
                      |+...               +.++.+++++|++.+ . +||++||..+|+....    +       ...+.+.|+.+|..
T Consensus       191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g-~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~  268 (442)
T PLN02206        191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRT  268 (442)
T ss_pred             eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC-C-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHH
Confidence            98532               456899999999987 5 8999999999974321    1       01225679999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .|.+...+
T Consensus       269 aE~~~~~y  276 (442)
T PLN02206        269 AETLTMDY  276 (442)
T ss_pred             HHHHHHHH
Confidence            98885544

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.77  E-value=1.8e-17  Score=124.14  Aligned_cols=128  Identities=15%  Similarity=0.175  Sum_probs=99.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |.++++++||||+|++|+++++.|++.|++|++++|+     +++++.+.   ..++.++.+|++|++++.++++     
T Consensus         1 m~~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~-----~~~~~~l~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~   72 (277)
T PRK05993          1 MDMKRSILITGCSSGIGAYCARALQSDGWRVFATCRK-----EEDVAALE---AEGLEAFQLDYAEPESIAALVAQVLEL   72 (277)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHH---HCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            5546789999999999999999999999999999998     44444333   2357889999999998877764     


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         .+|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     ....
T Consensus        73 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  146 (277)
T PRK05993         73 SGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSSILGLVPM-----KYRG  146 (277)
T ss_pred             cCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECChhhcCCC-----Cccc
Confidence               4799999998753                       112667888888877 7899999997665432     2356


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       147 ~Y~asK~a~~~~~  159 (277)
T PRK05993        147 AYNASKFAIEGLS  159 (277)
T ss_pred             hHHHHHHHHHHHH
Confidence            8999998877763

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.77  E-value=2.4e-17  Score=127.16  Aligned_cols=137  Identities=14%  Similarity=0.160  Sum_probs=99.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhc--CcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIK--QVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~--~~d~v   80 (157)
                      |+|+|||||||||++++++|+++|++ |+.+++....   .....+... ....+.++.+|+.|.+++.++++  ++|+|
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYA---GNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAV   77 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCcc---chHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence            48999999999999999999999976 5445443211   111111111 12457889999999999999997  48999


Q ss_pred             EEcCCCcc---------------hHHHHHHHHHHHHh--------cCCccEEEeccccccccCCC---------------
Q 040431           81 ISTVGHTL---------------LADQVKIIAAIKEA--------EGASRGTLRTQKGKMSSLSS---------------  122 (157)
Q Consensus        81 v~~a~~~~---------------~~~~~~l~~~~~~~--------~~~~~~v~~Ss~~~~~~~~~---------------  122 (157)
                      ||+|+...               +.++.+++++|.+.        ++.++||++||..+|+....               
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E  157 (352)
T PRK10084         78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE  157 (352)
T ss_pred             EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc
Confidence            99998743               55689999999874        12568999999988874210               


Q ss_pred             -ccCCccchhhHhHhhhhHHHHH
Q 040431          123 -EMTTTLDMLEMTELIDQKIFIY  144 (157)
Q Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~  144 (157)
                       ....+...|+.+|.+.+.+...
T Consensus       158 ~~~~~p~~~Y~~sK~~~E~~~~~  180 (352)
T PRK10084        158 TTAYAPSSPYSASKASSDHLVRA  180 (352)
T ss_pred             cCCCCCCChhHHHHHHHHHHHHH
Confidence             1135678999999998887544

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=1.6e-17  Score=123.55  Aligned_cols=131  Identities=18%  Similarity=0.223  Sum_probs=104.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchh-hHhhhhcCC-CeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKS-QLLDHFKNL-GVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~~-~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++|+|||||++||.++|..|.+.|.+++.+.|.....  ++. +.+.+.... ++.++++|++|.++.++++.      
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl--~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRL--ERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhH--HHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999988888884332  222 333333344 49999999999999997763      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       +.|++|||||...                       +..++.++..+++.+ .++||.+||++++...|..     +.|
T Consensus        90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~~P~~-----~~Y  163 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMPLPFR-----SIY  163 (282)
T ss_pred             CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccCCCcc-----ccc
Confidence             7999999999976                       444889999999998 7899999998887654433     288


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+-+.++
T Consensus       164 ~ASK~Al~~f~  174 (282)
T KOG1205|consen  164 SASKHALEGFF  174 (282)
T ss_pred             chHHHHHHHHH
Confidence            88888777663

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.77  E-value=1.8e-17  Score=125.42  Aligned_cols=137  Identities=15%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      +|+||||||++|++++++|++.|  ++|++++|.......++.+.+.  ...++.++.+|++|++++.+++++  +|+||
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   78 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE--DNPRYRFVKGDIGDRELVSRLFTEHQPDAVV   78 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc--cCCCcEEEEcCCcCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999999987  6888887643211122221111  124688899999999999999986  99999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-------cCCccchhhHhHhhhh
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-------MTTTLDMLEMTELIDQ  139 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~~~~~~~~~~~  139 (157)
                      |+|+...               +.++.++++++.+.+...+++++||..+|+.....       ...+...|+.+|...+
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e  158 (317)
T TIGR01181        79 HFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASD  158 (317)
T ss_pred             EcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHHH
Confidence            9998743               34577889998887522489999999888754321       1345668999999988


Q ss_pred             HHHHH
Q 040431          140 KIFIY  144 (157)
Q Consensus       140 ~~~~~  144 (157)
                      .+...
T Consensus       159 ~~~~~  163 (317)
T TIGR01181       159 HLVRA  163 (317)
T ss_pred             HHHHH
Confidence            87544

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02583 cinnamoyl-CoA reductase

Probab=99.76  E-value=3.3e-17  Score=124.03  Aligned_cols=140  Identities=10%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++|+|||||||||++++++|+++|++|++++|+...  ....+.+....  ..+++++.+|++|.+++.+++.++|.|+
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~--~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~   83 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGE--TEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLF   83 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchh--hhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            5689999999999999999999999999999986321  11111222221  2468899999999999999999999999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccC---CCc---c----CCcc-------chh
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL---SSE---M----TTTL-------DML  131 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~---~~~---~----~~~~-------~~~  131 (157)
                      |.++...             +.++.++++++.+...+++||++||.+++...   ...   .    +.+.       ..|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y  163 (297)
T PLN02583         84 CCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWH  163 (297)
T ss_pred             EeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHH
Confidence            9765432             56799999999886327899999998764211   100   0    1111       168


Q ss_pred             hHhHhhhhHHHHHH
Q 040431          132 EMTELIDQKIFIYF  145 (157)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (157)
                      ..+|...|+....+
T Consensus       164 ~~sK~~aE~~~~~~  177 (297)
T PLN02583        164 ALAKTLSEKTAWAL  177 (297)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998885544

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.1e-17  Score=132.75  Aligned_cols=134  Identities=18%  Similarity=0.247  Sum_probs=110.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCChHHHHHHhcC--cCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNHESLVKAIKQ--VDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~~--~d~   79 (157)
                      .++|+||||+|-+|+.+|+++++.+ .++++++|+..+. ..-...+.+ +....+.++-+|+.|.+.+..++++  +|+
T Consensus       250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~-~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~  328 (588)
T COG1086         250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKL-YLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI  328 (588)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHH-HHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence            6899999999999999999999997 4788999884432 111122222 2236789999999999999999997  999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHHHH
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFIY  144 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (157)
                      |+|.|+.-.               +-+++++++++.+.+ +++||.+||..+-.        |.+.++.||...|+.++.
T Consensus       329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~-V~~~V~iSTDKAV~--------PtNvmGaTKr~aE~~~~a  399 (588)
T COG1086         329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VKKFVLISTDKAVN--------PTNVMGATKRLAEKLFQA  399 (588)
T ss_pred             EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhC-CCEEEEEecCcccC--------CchHhhHHHHHHHHHHHH
Confidence            999999865               777999999999999 99999999977664        588999999999999555


Q ss_pred             HHh
Q 040431          145 FWG  147 (157)
Q Consensus       145 ~~~  147 (157)
                      +-.
T Consensus       400 ~~~  402 (588)
T COG1086         400 ANR  402 (588)
T ss_pred             Hhh
Confidence            533

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.76  E-value=2.4e-17  Score=132.80  Aligned_cols=108  Identities=21%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-h-----------cCCCeEEEEccCCChHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-F-----------KNLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~-----------~~~~v~~~~~D~~~~~~~~   71 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .+++..+.. .           ...++.++.+|+.|.+++.
T Consensus        80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn-----~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~  154 (576)
T PLN03209         80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS-----AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG  154 (576)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence            5789999999999999999999999999999998     444332211 1           0135889999999999999


Q ss_pred             HHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           72 KAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      +++.++|+|||++|...             ..++.++++++.+.+ +++||++||.++.
T Consensus       155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag-VgRIV~VSSiga~  212 (576)
T PLN03209        155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK-VNHFILVTSLGTN  212 (576)
T ss_pred             HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC-CCEEEEEccchhc
Confidence            99999999999998752             346889999999988 8999999998764

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.75  E-value=3.6e-17  Score=121.82  Aligned_cols=125  Identities=19%  Similarity=0.234  Sum_probs=95.6

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |+++++++||||+|+||++++++|+++|++|++++|+....     +     ...++.++.+|++|++++.++++     
T Consensus         1 m~~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~-----~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~   70 (270)
T PRK06179          1 MSNSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARA-----A-----PIPGVELLELDVTDDASVQAAVDEVIAR   70 (270)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhc-----c-----ccCCCeeEEeecCCHHHHHHHHHHHHHh
Confidence            65567899999999999999999999999999999984322     1     12467899999999999998876     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|+||||||...                       ....+.+++.+.+.+ .++||++||..++...+     ....
T Consensus        71 ~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~~-----~~~~  144 (270)
T PRK06179         71 AGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSVLGFLPAP-----YMAL  144 (270)
T ss_pred             CCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCccccCCCC-----CccH
Confidence              4799999999753                       112344555566676 78999999977665322     3457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       145 Y~~sK~a~~~~  155 (270)
T PRK06179        145 YAASKHAVEGY  155 (270)
T ss_pred             HHHHHHHHHHH
Confidence            88888876665

>PRK06194 hypothetical protein; Provisional

Probab=99.75  E-value=7e-17  Score=121.22  Aligned_cols=131  Identities=8%  Similarity=0.020  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||+++++.|+++|++|++++|+.     +..+.. .+..  ..++.++.+|++|.+++.++++     
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~   80 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ-----DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER   80 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999873     222211 2221  3457889999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCC-----ccEEEeccccccccCCCccC
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGA-----SRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~-----~~~v~~Ss~~~~~~~~~~~~  125 (157)
                        ++|+|||+||...                       ...++.+++.+.+.+..     +++|++||..++...     
T Consensus        81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-----  155 (287)
T PRK06194         81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP-----  155 (287)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC-----
Confidence              4799999999853                       12244444556665411     589999998777543     


Q ss_pred             CccchhhHhHhhhhHHHHH
Q 040431          126 TTLDMLEMTELIDQKIFIY  144 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~  144 (157)
                      .....|..+|.+.+.+...
T Consensus       156 ~~~~~Y~~sK~a~~~~~~~  174 (287)
T PRK06194        156 PAMGIYNVSKHAVVSLTET  174 (287)
T ss_pred             CCCcchHHHHHHHHHHHHH
Confidence            2346799999987777443

>PRK06182 short chain dehydrogenase; Validated

Probab=99.75  E-value=7.6e-17  Score=120.35  Aligned_cols=126  Identities=20%  Similarity=0.206  Sum_probs=96.9

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |. +++++||||+|++|++++++|++.|++|++++|+     .++++.+.   ..++.++.+|++|++++.++++     
T Consensus         1 ~~-~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~-----~~~l~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~   71 (273)
T PRK06182          1 MQ-KKVALVTGASSGIGKATARRLAAQGYTVYGAARR-----VDKMEDLA---SLGVHPLSLDVTDEASIKAAVDTIIAE   71 (273)
T ss_pred             CC-CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHH---hCCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence            43 6899999999999999999999999999999998     44443322   2358899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++||+||...                       ...++.+++.+.+.+ .+++|++||.++....+     ....
T Consensus        72 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~~~~-----~~~~  145 (273)
T PRK06182         72 EGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINISSMGGKIYTP-----LGAW  145 (273)
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcCCCC-----CccH
Confidence              6899999999753                       112566667777776 68999999976543221     2346


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       146 Y~~sKaa~~~~  156 (273)
T PRK06182        146 YHATKFALEGF  156 (273)
T ss_pred             hHHHHHHHHHH
Confidence            88888887766

>PRK09186 flagellin modification protein A; Provisional

Probab=99.75  E-value=3.9e-17  Score=120.48  Aligned_cols=135  Identities=17%  Similarity=0.104  Sum_probs=96.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh----cCCCeEEEEccCCChHHHHHHhc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF----KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~----~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |.+.++++||||+|+||+++++.|++.|++|++++|+.     ++++.+ .+.    ....+.++.+|++|++++.+++.
T Consensus         1 ~~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~   75 (256)
T PRK09186          1 MLKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDK-----EALNELLESLGKEFKSKKLSLVELDITDQESLEEFLS   75 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh-----HHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHH
Confidence            55578999999999999999999999999999998873     333221 111    22346778999999999988876


Q ss_pred             -------CcCEEEEcCCCcc--------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           76 -------QVDVVISTVGHTL--------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        76 -------~~d~vv~~a~~~~--------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                             .+|+|||+|+...                          ...++.+++++.+.+ .++||++||..++.....
T Consensus        76 ~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~  154 (256)
T PRK09186         76 KSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG-GGNLVNISSIYGVVAPKF  154 (256)
T ss_pred             HHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CceEEEEechhhhccccc
Confidence                   2899999997421                          223556677777776 689999999766532211


Q ss_pred             c-----cCCccchhhHhHhhhhHH
Q 040431          123 E-----MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       123 ~-----~~~~~~~~~~~~~~~~~~  141 (157)
                      .     .......|..+|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~Y~~sK~a~~~l  178 (256)
T PRK09186        155 EIYEGTSMTSPVEYAAIKAGIIHL  178 (256)
T ss_pred             hhccccccCCcchhHHHHHHHHHH
Confidence            1     111223688889877666

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.75  E-value=9.7e-17  Score=119.97  Aligned_cols=129  Identities=14%  Similarity=0.205  Sum_probs=97.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |+ +++++||||+|++|++++++|+++|++|++++|+     ++..+.+.+.....+.++++|++|++++.+++.     
T Consensus         1 ~~-~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   74 (275)
T PRK08263          1 MM-EKVWFITGASRGFGRAWTEAALERGDRVVATARD-----TATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEH   74 (275)
T ss_pred             CC-CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHH
Confidence            54 6789999999999999999999999999999998     444443333334467888999999999877765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||+||...                   +.+    .+.+++.+.+.+ .+++|++||..++...+     ....
T Consensus        75 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS~~~~~~~~-----~~~~  148 (275)
T PRK08263         75 FGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR-SGHIIQISSIGGISAFP-----MSGI  148 (275)
T ss_pred             cCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEcChhhcCCCC-----CccH
Confidence              5799999999754                   122    344555556666 67999999987765433     2457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       149 Y~~sKaa~~~~  159 (275)
T PRK08263        149 YHASKWALEGM  159 (275)
T ss_pred             HHHHHHHHHHH
Confidence            88888876655

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.75  E-value=1.1e-16  Score=118.04  Aligned_cols=130  Identities=14%  Similarity=0.065  Sum_probs=96.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc--
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      |+.+++++||||+|++|++++++|+++|++|++++|++     ++.+.+ .+.  ...++.++.+|++|++++.+++.  
T Consensus         1 ~~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   75 (258)
T PRK12429          1 MLKGKVALVTGAASGIGLEIALALAKEGAKVVIADLND-----EAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYA   75 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            44468999999999999999999999999999999984     333222 111  23568889999999999888775  


Q ss_pred             -----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                           .+|+|||+++...                       ....+.+++++.+.+ .++|+++||...+...     ..
T Consensus        76 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss~~~~~~~-----~~  149 (258)
T PRK12429         76 VETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMASVHGLVGS-----AG  149 (258)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcchhhccCC-----CC
Confidence                 5899999998643                       122566777777776 7899999997665432     23


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+.+.+
T Consensus       150 ~~~y~~~k~a~~~~  163 (258)
T PRK12429        150 KAAYVSAKHGLIGL  163 (258)
T ss_pred             cchhHHHHHHHHHH
Confidence            45677777665544

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.75  E-value=3.2e-17  Score=135.72  Aligned_cols=135  Identities=16%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHH--hCCCcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCCh------HHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASV--KAGHPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNH------ESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~--~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~------~~~~~~~~   75 (157)
                      |+|+|||||||||++|+++|+  +.|++|++++|+..   ..+.+.+ ......+++++.+|+.|+      +.+.++ +
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~---~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~   76 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQS---LSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-G   76 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-c
Confidence            489999999999999999999  57899999999632   2222222 112225689999999884      455555 8


Q ss_pred             CcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc--------CCccchhhHhH
Q 040431           76 QVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM--------TTTLDMLEMTE  135 (157)
Q Consensus        76 ~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~--------~~~~~~~~~~~  135 (157)
                      ++|+|||+|+...            +.++.++++++.+.+ .++|+|+||.++|+......        ..+...|..+|
T Consensus        77 ~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~v~~SS~~v~g~~~~~~~e~~~~~~~~~~~~Y~~sK  155 (657)
T PRK07201         77 DIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQ-AATFHHVSSIAVAGDYEGVFREDDFDEGQGLPTPYHRTK  155 (657)
T ss_pred             CCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcC-CCeEEEEeccccccCccCccccccchhhcCCCCchHHHH
Confidence            9999999998643            667899999999988 89999999999886433211        22346799999


Q ss_pred             hhhhHHHHH
Q 040431          136 LIDQKIFIY  144 (157)
Q Consensus       136 ~~~~~~~~~  144 (157)
                      ...|.+...
T Consensus       156 ~~~E~~~~~  164 (657)
T PRK07201        156 FEAEKLVRE  164 (657)
T ss_pred             HHHHHHHHH
Confidence            998888553

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.74  E-value=1.1e-16  Score=118.42  Aligned_cols=110  Identities=25%  Similarity=0.287  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHh-cCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAI-KQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~-~~~d~vv   81 (157)
                      +|+|+||||||++|++++++|++.|++|++++|+.     ++...+.. ...++.++.+|++| .+.+.+.+ .++|+||
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~-----~~~~~~~~-~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi   90 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV-----DKAKTSLP-QDPSLQIVRADVTEGSDKLVEAIGDDSDAVI   90 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH-----HHHHHhcc-cCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence            67999999999999999999999999999999983     33221111 12468999999998 46777778 6899999


Q ss_pred             EcCCCcc-----------hHHHHHHHHHHHHhcCCccEEEeccccccccC
Q 040431           82 STVGHTL-----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL  120 (157)
Q Consensus        82 ~~a~~~~-----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~  120 (157)
                      +++|...           ..++.++++++.+.+ .++||++||.++|+..
T Consensus        91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~~~iV~iSS~~v~g~~  139 (251)
T PLN00141         91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAG-VTRFILVSSILVNGAA  139 (251)
T ss_pred             ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEEccccccCCC
Confidence            9998642           235789999999887 8999999999888643

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.74  E-value=6.3e-17  Score=119.47  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhc-CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIK-QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~-~~d~   79 (157)
                      +++++||||||++|++++++|++.|++|++++|+.     ...+.+.+   ....++.++.+|+.|++++.+++. ++|+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~   76 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIA-----PQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDV   76 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCE
Confidence            57899999999999999999999999999999973     33322221   123468899999999999998887 8999


Q ss_pred             EEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           80 VISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        80 vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      |||+||...                       ....+.+++.+.+.+ .++||++||..+....     .....|..+|.
T Consensus        77 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~~~-----~~~~~Y~~sK~  150 (257)
T PRK09291         77 LLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG-KGKVVFTSSMAGLITG-----PFTGAYCASKH  150 (257)
T ss_pred             EEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcChhhccCC-----CCcchhHHHHH
Confidence            999999642                       122444566666666 6899999997654332     23457888888


Q ss_pred             hhhHH
Q 040431          137 IDQKI  141 (157)
Q Consensus       137 ~~~~~  141 (157)
                      +.+.+
T Consensus       151 a~~~~  155 (257)
T PRK09291        151 ALEAI  155 (257)
T ss_pred             HHHHH
Confidence            77665

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.74  E-value=2.1e-17  Score=125.29  Aligned_cols=125  Identities=15%  Similarity=0.222  Sum_probs=88.3

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC---hHHH-HHHhc-----Cc
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN---HESL-VKAIK-----QV   77 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~-~~~~~-----~~   77 (157)
                      |+|||||||||++|+++|++.|++++++.|+....  ...   .       .+..+|+.|   .+++ .++++     ++
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~--~~~---~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   69 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG--TKF---V-------NLVDLDIADYMDKEDFLAQIMAGDDFGDI   69 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcc--hHH---H-------hhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence            89999999999999999999999877776663321  000   0       112344444   3332 33332     68


Q ss_pred             CEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhh
Q 040431           78 DVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELID  138 (157)
Q Consensus        78 d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~  138 (157)
                      |+|||+|+...             ..++.+++++|++.+ . +|||+||.++|+.....      ...|.+.|+.+|.+.
T Consensus        70 d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~-~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~  147 (308)
T PRK11150         70 EAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLF  147 (308)
T ss_pred             cEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHHHH
Confidence            99999997532             455889999999987 5 69999999999864221      134668899999998


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      +.+...+
T Consensus       148 E~~~~~~  154 (308)
T PRK11150        148 DEYVRQI  154 (308)
T ss_pred             HHHHHHH
Confidence            8875554

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.74  E-value=1.7e-16  Score=116.64  Aligned_cols=139  Identities=14%  Similarity=0.100  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCch-hhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK-SQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... .+. .+.++. ...++.++.+|++|++++.++++       
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~-~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPR-ANKVVAEIEA-AGGRASAVGADLTDEESVAALMDTAREEFG   83 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHh-HHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999998874211 111 111222 13457889999999999887765       


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      ++|+|||+|+...             ..++.++++++.+.- ..+++|++||..+..............|..+|.+.+.+
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~~~~Y~~sK~a~e~~  163 (248)
T PRK07806         84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPTVKTMPEYEPVARSKRAGEDA  163 (248)
T ss_pred             CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCccccCCccccHHHHHHHHHHHH
Confidence            5899999998642             445677888877542 13589999996543211111112356889999988877


Q ss_pred             HHH
Q 040431          142 FIY  144 (157)
Q Consensus       142 ~~~  144 (157)
                      ...
T Consensus       164 ~~~  166 (248)
T PRK07806        164 LRA  166 (248)
T ss_pred             HHH
Confidence            433

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.74  E-value=3.1e-17  Score=121.30  Aligned_cols=138  Identities=15%  Similarity=0.204  Sum_probs=90.9

Q ss_pred             EEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCC-Cchh-hHhh------hh---cCCCeEEEEccCCCh------HH
Q 040431            9 FIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISG-PSKS-QLLD------HF---KNLGVNLVIGDVLNH------ES   69 (157)
Q Consensus         9 itGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~-~~~~-~~~~------~~---~~~~v~~~~~D~~~~------~~   69 (157)
                      |||||||+|++|+++|++.+.  +|+++.|..+... .+++ +.+.      ..   ...++.++.+|++++      ++
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999986  8999999854310 1111 0111      11   256899999999864      56


Q ss_pred             HHHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc--------------
Q 040431           70 LVKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE--------------  123 (157)
Q Consensus        70 ~~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~--------------  123 (157)
                      +..+.+.+|+|||+|+..+            +.+++++++++.+.+ .++|+|+||..+.+.....              
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~-~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~  159 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGK-RKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLD  159 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TTT--SSS-HHH--EEE
T ss_pred             hhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhcc-CcceEEeccccccCCCCCcccccccccccccch
Confidence            7777789999999999987            788999999999776 5699999994443322211              


Q ss_pred             -cCCccchhhHhHhhhhHHHHHHHh
Q 040431          124 -MTTTLDMLEMTELIDQKIFIYFWG  147 (157)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~~~  147 (157)
                       .......|..+|...|.++..+..
T Consensus       160 ~~~~~~~gY~~SK~~aE~~l~~a~~  184 (249)
T PF07993_consen  160 PPQGFPNGYEQSKWVAERLLREAAQ  184 (249)
T ss_dssp             --TTSEE-HHHHHHHHHHHHHHHHH
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHh
Confidence             146667999999999999776654

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.73  E-value=2.6e-17  Score=124.10  Aligned_cols=117  Identities=19%  Similarity=0.210  Sum_probs=87.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |||+||||+|++|++|.++|.+.|++|+.++|.                       .+|+.|.+++.+.++  ++|+|||
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~~pd~Vin   57 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAFKPDVVIN   57 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH--SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHhCCCeEec
Confidence            699999999999999999999999999988655                       468899999999987  5999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC------ccCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS------EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  141 (157)
                      +|+...               ...+.++.++|.+.+  .++||+||..+|+....      +.+.|.+.|+.+|...|..
T Consensus        58 ~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~~E~~  135 (286)
T PF04321_consen   58 CAAYTNVDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLEGEQA  135 (286)
T ss_dssp             ------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHHHHHH
T ss_pred             cceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHHHHHH
Confidence            999865               455788999999987  58999999999854422      2267899999999999998


Q ss_pred             HHHHH
Q 040431          142 FIYFW  146 (157)
Q Consensus       142 ~~~~~  146 (157)
                      .....
T Consensus       136 v~~~~  140 (286)
T PF04321_consen  136 VRAAC  140 (286)
T ss_dssp             HHHH-
T ss_pred             HHHhc
Confidence            66543

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.73  E-value=2e-16  Score=117.16  Aligned_cols=128  Identities=17%  Similarity=0.192  Sum_probs=95.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcC-CCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKN-LGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~-~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      +++++||||+|+||++++++|+++|++|++++|+     +++++.+.+ ... .++.++.+|++|++++.++++      
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~   76 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARR-----TDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAH   76 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            6799999999999999999999999999999988     444433222 111 168899999999999988765      


Q ss_pred             -CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       .+|++||++|...                    ..+    .+.+++.+.+.+ .++||++||...+...+     ....
T Consensus        77 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~-~~~iv~isS~~~~~~~~-----~~~~  150 (257)
T PRK07024         77 GLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR-RGTLVGIASVAGVRGLP-----GAGA  150 (257)
T ss_pred             CCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC-CCEEEEEechhhcCCCC-----CCcc
Confidence             3799999999642                    111    334555666666 68999999977654322     3456


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       151 Y~asK~a~~~~~  162 (257)
T PRK07024        151 YSASKAAAIKYL  162 (257)
T ss_pred             hHHHHHHHHHHH
Confidence            888988877663

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.73  E-value=3.1e-16  Score=115.57  Aligned_cols=127  Identities=14%  Similarity=0.150  Sum_probs=95.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~   77 (157)
                      |+++||||+|++|.++++.|+++|++|++++|+     +++++.+......++.++.+|++|.+++.++++       ++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   75 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRR-----QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNI   75 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            479999999999999999999999999999998     444444433334468889999999998887765       68


Q ss_pred             CEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           78 DVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        78 d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      |++||++|...                        ...++.+++++.+.+ .++++++||..+....     .....|..
T Consensus        76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~~Y~~  149 (248)
T PRK10538         76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGSTAGSWPY-----AGGNVYGA  149 (248)
T ss_pred             CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCcccCCCC-----CCCchhHH
Confidence            99999998631                        111455666666666 6899999997654321     23457888


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       150 sK~~~~~~~  158 (248)
T PRK10538        150 TKAFVRQFS  158 (248)
T ss_pred             HHHHHHHHH
Confidence            888776663

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.72  E-value=3.2e-16  Score=116.96  Aligned_cols=126  Identities=11%  Similarity=-0.019  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||||+||+++++.|++.|++|++++|+     +++.+.+.... ..+.++.+|++|++++.++++       +
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~-----~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDLD-----EALAKETAAEL-GLVVGGPLDVTDPASFAAFLDAVEADLGP   78 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHh-ccceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999887     44444332221 157889999999998877664       5


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ....+.+++.+.+.+ .++|+++||..++...     .....|..
T Consensus        79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  152 (273)
T PRK07825         79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVASLAGKIPV-----PGMATYCA  152 (273)
T ss_pred             CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCccccCCC-----CCCcchHH
Confidence            799999999743                       122445666677776 7899999998766432     23456788


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       153 sKaa~~~~  160 (273)
T PRK07825        153 SKHAVVGF  160 (273)
T ss_pred             HHHHHHHH
Confidence            88765544

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=6.8e-17  Score=120.02  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=98.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEEc
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIST   83 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~~   83 (157)
                      +|||||++|.+|++|++.|. .+++|+.++|.+                       +|++|++.+.++++  ++|+|||+
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~~PDvVIn~   57 (281)
T COG1091           2 KILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRETRPDVVINA   57 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhhCCCEEEEC
Confidence            59999999999999999998 679999998871                       79999999999998  68999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC------CccCCccchhhHhHhhhhHHH
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS------SEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+...               ..+..++.+++.+.|  .++||+||..++....      .+.+.|.+.|+.+|++.|...
T Consensus        58 AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~v  135 (281)
T COG1091          58 AAYTAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAV  135 (281)
T ss_pred             ccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHHHH
Confidence            99987               445889999999998  5899999999875443      223789999999999999885


Q ss_pred             HHH
Q 040431          143 IYF  145 (157)
Q Consensus       143 ~~~  145 (157)
                      ..+
T Consensus       136 ~~~  138 (281)
T COG1091         136 RAA  138 (281)
T ss_pred             HHh
Confidence            554

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.72  E-value=2.7e-16  Score=119.44  Aligned_cols=136  Identities=24%  Similarity=0.359  Sum_probs=101.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEEc
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIST   83 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~~   83 (157)
                      +|+||||||++|++++++|+++|++|+++.|..... .+......+  ..++..+.+|+.+++++.++++  ++|+|||+
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~   77 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGS-PEALKRGER--ITRVTFVEGDLRDRELLDRLFEEHKIDAVIHF   77 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccc-hhhhhhhcc--ccceEEEECCCCCHHHHHHHHHhCCCcEEEEC
Confidence            589999999999999999999999998876543221 111111111  1257788999999999999987  69999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHHH
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  142 (157)
                      ||...               ..++.++++++.+.+ .++++++||..+|+.....      ...+...|..+|...+.++
T Consensus        78 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~~~e~~~  156 (328)
T TIGR01179        78 AGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG-VKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERIL  156 (328)
T ss_pred             ccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC-CCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHHHHHHHH
Confidence            98742               456788999998887 7899999998888643221      1235678999999888775


Q ss_pred             HHH
Q 040431          143 IYF  145 (157)
Q Consensus       143 ~~~  145 (157)
                      ..+
T Consensus       157 ~~~  159 (328)
T TIGR01179       157 RDL  159 (328)
T ss_pred             HHH
Confidence            543

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.72  E-value=4.1e-16  Score=114.59  Aligned_cols=127  Identities=13%  Similarity=0.114  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhc-CCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFK-NLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~-~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|++|.+++++|++.|++|++++|++     ++.+.+. ... ..++.++.+|++|++++..+++      
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE-----EAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERF   79 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999984     3332221 111 3457899999999999988765      


Q ss_pred             -CcCEEEEcCCCcc--------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL--------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~--------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|+|||++|...                    .    ...+.+++.+.+.+ .++|+++||..++...+     ....
T Consensus        80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~-----~~~~  153 (251)
T PRK07231         80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG-GGAIVNVASTAGLRPRP-----GLGW  153 (251)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhcCCCC-----CchH
Confidence             5799999999742                    1    12444555555555 68999999987765432     3456


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       154 y~~sk~~~~~~  164 (251)
T PRK07231        154 YNASKGAVITL  164 (251)
T ss_pred             HHHHHHHHHHH
Confidence            77888766555

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.72  E-value=2.4e-16  Score=116.58  Aligned_cols=130  Identities=12%  Similarity=0.075  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|++|+++++.|+++|++|++++|++... .+..+.+.. ....+.++++|++|++++.+++.       +
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGA-NAVADEINK-AGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHHHHh-cCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999984321 111112222 13457889999999999887765       3


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHH-HHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAI-KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~-~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      +|+|||++|...                   +.+    ++.+++++ .+.+ .++|+++||...+...     .....|.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~~~iv~~ss~~~~~~~-----~~~~~y~  158 (262)
T PRK13394         85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR-GGVVIYMGSVHSHEAS-----PLKSAYV  158 (262)
T ss_pred             CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CcEEEEEcchhhcCCC-----CCCcccH
Confidence            899999999753                   111    56677777 5555 7899999997655322     2345677


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       159 ~sk~a~~~~  167 (262)
T PRK13394        159 TAKHGLLGL  167 (262)
T ss_pred             HHHHHHHHH
Confidence            777765554

>PLN02996 fatty acyl-CoA reductase

Probab=99.71  E-value=2.8e-16  Score=126.28  Aligned_cols=117  Identities=17%  Similarity=0.226  Sum_probs=89.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---CcEEEEecCCCCCCC-chhh-Hh------h---h--------hcCCCeEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---HPTFVLVRESTISGP-SKSQ-LL------D---H--------FKNLGVNLVI   61 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~-~~~~-~~------~---~--------~~~~~v~~~~   61 (157)
                      .++|+|||||||+|++|++.|+..+   .+|+++.|....... ++++ .+      .   +        +...++.++.
T Consensus        11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~   90 (491)
T PLN02996         11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVP   90 (491)
T ss_pred             CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEe
Confidence            5789999999999999999999865   368999998654322 1211 11      0   0        0125789999


Q ss_pred             ccCC-------ChHHHHHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccC
Q 040431           62 GDVL-------NHESLVKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL  120 (157)
Q Consensus        62 ~D~~-------~~~~~~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~  120 (157)
                      +|++       +.+.+.++++++|+|||+|+...            +.++.++++++.+.+.+++|+++||..+|+..
T Consensus        91 GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~~  168 (491)
T PLN02996         91 GDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEK  168 (491)
T ss_pred             cccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecCC
Confidence            9998       44557778889999999999755            66789999999986337899999999998653

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=4.7e-16  Score=114.35  Aligned_cols=130  Identities=12%  Similarity=0.103  Sum_probs=92.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEE-ecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc---
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVL-VRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~-~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      ++++++||||+|+||++++++|+++|++|+++ .|+     .++.+.+ ++.  .+.++.++.+|++|++++.++++   
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   77 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARS-----RKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID   77 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC-----HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            36899999999999999999999999998764 555     2222211 111  23468889999999999888776   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          .+|+|||++|...                   ..+    .+.+.+++.+.+ .++||++||...+...     .+.
T Consensus        78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~-----~~~  151 (250)
T PRK08063         78 EEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVG-GGKIISLSSLGSIRYL-----ENY  151 (250)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEEcchhhccCC-----CCc
Confidence                4899999998643                   112    333444444555 5799999997665422     234


Q ss_pred             chhhHhHhhhhHHHH
Q 040431          129 DMLEMTELIDQKIFI  143 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (157)
                      ..|..+|.+.+.+..
T Consensus       152 ~~y~~sK~a~~~~~~  166 (250)
T PRK08063        152 TTVGVSKAALEALTR  166 (250)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            578888888777743

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.71  E-value=5.1e-16  Score=112.50  Aligned_cols=124  Identities=13%  Similarity=0.150  Sum_probs=92.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      +|+++||||+|++|+++++.|+++ ++|++++|+     +++.+.+.+. ..++.++.+|++|++++.+++.   ++|+|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~-----~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   75 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRP-----AERLDELAAE-LPGATPFPVDLTDPEAIAAAVEQLGRLDVL   75 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCC-----HHHHHHHHHH-hccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence            679999999999999999999999 999999998     4343333221 1358899999999999999887   59999


Q ss_pred             EEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      ||++|...                       ....+.+++.+.+.  .++++++||..++...+     ....|..+|.+
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~~~~~-----~~~~y~~~K~a  148 (227)
T PRK08219         76 VHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINSGAGLRANP-----GWGSYAASKFA  148 (227)
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcchHhcCcCC-----CCchHHHHHHH
Confidence            99999743                       11144455555554  36899999977664322     24578888877


Q ss_pred             hhHH
Q 040431          138 DQKI  141 (157)
Q Consensus       138 ~~~~  141 (157)
                      .+.+
T Consensus       149 ~~~~  152 (227)
T PRK08219        149 LRAL  152 (227)
T ss_pred             HHHH
Confidence            6655

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.71  E-value=4.8e-16  Score=115.16  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      |++++||||+|++|++++++|+++|++|++++|+     .++.+.+.. ....++.++.+|++|.+++.+++.       
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   75 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDIN-----EAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATG   75 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999988     444443322 223568999999999998887765       


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHHHHH----HHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-------------------LADQVKI----IAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~~~l----~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|+|||+||...                   ..++..+    .+.+.+.+ .++|+++||..+....     .....|
T Consensus        76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~~Y  149 (260)
T PRK08267         76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP-GARVINTSSASAIYGQ-----PGLAVY  149 (260)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEeCchhhCcCC-----CCchhh
Confidence             4699999999753                   1223334    44444554 5789999997554322     224578


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       150 ~~sKaa~~~~~  160 (260)
T PRK08267        150 SATKFAVRGLT  160 (260)
T ss_pred             HHHHHHHHHHH
Confidence            88888766653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.71  E-value=6e-16  Score=113.59  Aligned_cols=134  Identities=14%  Similarity=0.073  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|++|.+++++|+++|++|++++|+.... ....+.+.. ...++.++.+|+.|++++.++++       .
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~-~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDA-AATAELVEA-AGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999999984221 111111111 12458899999999999988875       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+++...                   ..++..+++++    .+.+ .++|+++||..++..    .......|..
T Consensus        84 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss~~~~~~----~~~~~~~y~~  158 (251)
T PRK12826         84 LDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSSVAGPRV----GYPGLAHYAA  158 (251)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEechHhhcc----CCCCccHHHH
Confidence            899999998754                   11233344443    4555 678999999877611    1233557888


Q ss_pred             hHhhhhHHHHH
Q 040431          134 TELIDQKIFIY  144 (157)
Q Consensus       134 ~~~~~~~~~~~  144 (157)
                      +|.+.+.++..
T Consensus       159 sK~a~~~~~~~  169 (251)
T PRK12826        159 SKAGLVGFTRA  169 (251)
T ss_pred             HHHHHHHHHHH
Confidence            88877666433

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1.8e-16  Score=120.26  Aligned_cols=138  Identities=14%  Similarity=0.114  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... .+..+.+.. .....+.++.+|++|.+++.++++       
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~   94 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKG-KAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP   94 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence            46899999999999999999999999999999973221 111112221 123468899999999999887765       


Q ss_pred             CcCEEEEcCCCcc-----------------hHH----HHHHHHHHHHhcCCccEEEeccccccc--cCCCc------cCC
Q 040431           76 QVDVVISTVGHTL-----------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMS--SLSSE------MTT  126 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~--~~~~~------~~~  126 (157)
                      ++|+||||||...                 ..+    ++.+++.+.+.+ .++||++||.+.+.  ..+..      ...
T Consensus        95 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~  173 (306)
T PRK06197         95 RIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSSGGHRIRAAIHFDDLQWERRYN  173 (306)
T ss_pred             CCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECCHHHhccCCCCccccCcccCCC
Confidence            5899999999642                 112    666777777766 57999999986542  11111      123


Q ss_pred             ccchhhHhHhhhhHHHH
Q 040431          127 TLDMLEMTELIDQKIFI  143 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~~  143 (157)
                      +...|..+|.+.+.+..
T Consensus       174 ~~~~Y~~SK~a~~~~~~  190 (306)
T PRK06197        174 RVAAYGQSKLANLLFTY  190 (306)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            45689999988766643

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.71  E-value=3.5e-16  Score=114.44  Aligned_cols=132  Identities=13%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++|+||||||++|++++++|+++|++|+++.|+.... .+...........++.++.+|+.|++++.++++       +
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   84 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA-AEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR   84 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999998877764321 111111111123568899999999999888775       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||++|...                   ..+..++++.    +.+.+ .++|+++||..++...     .....|..
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~SS~~~~~~~-----~~~~~y~~  158 (249)
T PRK12825         85 IDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNISSVAGLPGW-----PGRSNYAA  158 (249)
T ss_pred             CCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECccccCCCC-----CCchHHHH
Confidence            799999999643                   1223334444    45666 7899999998776432     23456778


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       159 sK~~~~~~~  167 (249)
T PRK12825        159 AKAGLVGLT  167 (249)
T ss_pred             HHHHHHHHH
Confidence            887665553

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.71  E-value=5.2e-16  Score=114.88  Aligned_cols=127  Identities=11%  Similarity=0.052  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.     ...+..++.  ...++.++.+|++|++++.++++      
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-----LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF   82 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-----HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999999998873     111222222  13457789999999988877765      


Q ss_pred             -CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|++|||||...                        ...++.+++.+.+.+ .++||++||...++.       ...+
T Consensus        83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~-------~~~~  154 (260)
T PRK12823         83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATRGI-------NRVP  154 (260)
T ss_pred             CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCccccCC-------CCCc
Confidence             5899999998531                        112445667776766 679999999876532       2346


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       155 Y~~sK~a~~~~~~  167 (260)
T PRK12823        155 YSAAKGGVNALTA  167 (260)
T ss_pred             cHHHHHHHHHHHH
Confidence            8999988777633

>PLN00016 RNA-binding protein; Provisional

Probab=99.71  E-value=2.1e-16  Score=123.36  Aligned_cols=114  Identities=25%  Similarity=0.320  Sum_probs=86.5

Q ss_pred             CCeEEEE----cCCCcchHHHHHHHHhCCCcEEEEecCCCCCCC---chhhHhhhhcCCCeEEEEccCCChHHHHHHhcC
Q 040431            4 KSKILFI----GGTGYIGKFTVEASVKAGHPTFVLVRESTISGP---SKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         4 ~~~ilit----GatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~---~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      +++|+||    |||||+|++|+++|++.|++|++++|+......   .....+.++...+++++.+|+.|.+++. ...+
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~-~~~~  130 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV-AGAG  130 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh-ccCC
Confidence            5789999    999999999999999999999999998543100   0001112222346899999997733322 1247


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccC
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSL  120 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~  120 (157)
                      +|+|||+++.. ...++.+++++++.| +++|||+||.++|+..
T Consensus       131 ~d~Vi~~~~~~-~~~~~~ll~aa~~~g-vkr~V~~SS~~vyg~~  172 (378)
T PLN00016        131 FDVVYDNNGKD-LDEVEPVADWAKSPG-LKQFLFCSSAGVYKKS  172 (378)
T ss_pred             ccEEEeCCCCC-HHHHHHHHHHHHHcC-CCEEEEEccHhhcCCC
Confidence            99999998764 667889999999998 8999999999999753

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.71  E-value=3.1e-16  Score=118.86  Aligned_cols=127  Identities=12%  Similarity=0.121  Sum_probs=94.9

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----CcCEEE
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----QVDVVI   81 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----~~d~vv   81 (157)
                      |+|||||||+|+++++.|.+.|+ +|++++|....   .+.   ...   ....+..|+.+++.++.+..    ++|+||
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~---~~~---~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~D~vv   71 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDG---HKF---LNL---ADLVIADYIDKEDFLDRLEKGAFGKIEAIF   71 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCc---hhh---hhh---hheeeeccCcchhHHHHHHhhccCCCCEEE
Confidence            68999999999999999999997 68887765321   111   111   11346778888877777664    799999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhhhhHHH
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  142 (157)
                      |+|+...             ..++.++++++.+.+ . +||++||.++|+......      ..+.+.|+.+|...+.+.
T Consensus        72 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~  149 (314)
T TIGR02197        72 HQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG-I-PFIYASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYV  149 (314)
T ss_pred             ECccccCccccchHHHHHHHHHHHHHHHHHHHHhC-C-cEEEEccHHhcCCCCCCcccccCcCCCCCHHHHHHHHHHHHH
Confidence            9998643             466888999999887 5 799999999987532221      236778999999988885


Q ss_pred             HH
Q 040431          143 IY  144 (157)
Q Consensus       143 ~~  144 (157)
                      ..
T Consensus       150 ~~  151 (314)
T TIGR02197       150 RR  151 (314)
T ss_pred             HH
Confidence            54

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.71  E-value=4.5e-16  Score=115.86  Aligned_cols=127  Identities=13%  Similarity=0.180  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     .++++.+    ....+.++.++.+|++|++++.++++    
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~   82 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRN-----EENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKN   82 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999998     3333322    22223468899999999999988876    


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||+|...                       ...++.+++.+.+.+ .+++|++||..+....+     ....
T Consensus        83 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~~~~~~~~-----~~~~  156 (263)
T PRK08339         83 IGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSVAIKEPIP-----NIAL  156 (263)
T ss_pred             hCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCccccCCCC-----cchh
Confidence              4899999999743                       223667777777776 68999999987654322     2345


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       157 y~asKaal~~l  167 (263)
T PRK08339        157 SNVVRISMAGL  167 (263)
T ss_pred             hHHHHHHHHHH
Confidence            66677665544

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.70  E-value=2.9e-16  Score=117.78  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=92.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEEEc
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVIST   83 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv~~   83 (157)
                      +|+||||||++|++++++|++.|++|++++|.                       .+|+.|++++.+++++  +|+|||+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~~~d~vi~~   57 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAIRPDAVVNT   57 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhCCCCEEEEC
Confidence            58999999999999999999999999998775                       3688999999999985  5999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHHH
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+...               ..++.++++++.+.+ . +||++||..+|+.....      ...+...|+.+|...|...
T Consensus        58 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~~~K~~~E~~~  135 (287)
T TIGR01214        58 AAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG-A-RLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAI  135 (287)
T ss_pred             CccccccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeeeeecCCCCCCCCCCCCCCCcchhhHHHHHHHHHH
Confidence            98743               345888999998876 4 89999999888643211      1345678999999888774


Q ss_pred             HH
Q 040431          143 IY  144 (157)
Q Consensus       143 ~~  144 (157)
                      ..
T Consensus       136 ~~  137 (287)
T TIGR01214       136 RA  137 (287)
T ss_pred             HH
Confidence            43

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.70  E-value=7.9e-16  Score=116.33  Aligned_cols=128  Identities=14%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.++++.|+++|++|++++|+     .++.+.+. +.  ....+.++.+|++|++++.++++     
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~-----~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  114 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARR-----EDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR  114 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     44333222 11  13457789999999999888876     


Q ss_pred             --CcCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 --QVDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                        .+|++||+||...                         +...+.+++.+.+.+ .+++|++||.+++...    ....
T Consensus       115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~----~p~~  189 (293)
T PRK05866        115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG-DGHIINVATWGVLSEA----SPLF  189 (293)
T ss_pred             cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcCCC----CCCc
Confidence              6899999998752                         111334455555666 6899999997665421    1234


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       190 ~~Y~asKaal~~l  202 (293)
T PRK05866        190 SVYNASKAALSAV  202 (293)
T ss_pred             chHHHHHHHHHHH
Confidence            6789999887666

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.70  E-value=3.9e-16  Score=114.56  Aligned_cols=131  Identities=15%  Similarity=0.110  Sum_probs=91.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----~~d~   79 (157)
                      |++++||||+|++|++++++|+++|++|++++|+.... .+..+.+......++.++.+|++|++++.+++.    .+|+
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERL-ERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            46899999999999999999999999999999984321 111111222223578999999999999888765    4699


Q ss_pred             EEEcCCCcc-------------------hHHHHHHH----HHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           80 VISTVGHTL-------------------LADQVKII----AAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        80 vv~~a~~~~-------------------~~~~~~l~----~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      +||++|...                   ..++..++    +.+.+.+ .++++++||..+....     .....|..+|.
T Consensus        80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~Y~~sK~  153 (243)
T PRK07102         80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARG-SGTIVGISSVAGDRGR-----ASNYVYGSAKA  153 (243)
T ss_pred             EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC-CCEEEEEecccccCCC-----CCCcccHHHHH
Confidence            999998743                   12233333    3344455 6789999997554332     22346888887


Q ss_pred             hhhHH
Q 040431          137 IDQKI  141 (157)
Q Consensus       137 ~~~~~  141 (157)
                      +.+.+
T Consensus       154 a~~~~  158 (243)
T PRK07102        154 ALTAF  158 (243)
T ss_pred             HHHHH
Confidence            76555

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.70  E-value=2.2e-16  Score=119.30  Aligned_cols=114  Identities=13%  Similarity=0.117  Sum_probs=88.8

Q ss_pred             EEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEEcCC
Q 040431            8 LFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVISTVG   85 (157)
Q Consensus         8 litGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~~a~   85 (157)
                      +|||||||||++|++.|++.|++|+++.+.                      ..+|+.|.+++.++++  ++|+|||+|+
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~   58 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKEKPTYVILAAA   58 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhccCCCEEEEeee
Confidence            699999999999999999999988766432                      1479999999999887  5899999997


Q ss_pred             Ccc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc----------cCCcc-chhhHhHhhh
Q 040431           86 HTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE----------MTTTL-DMLEMTELID  138 (157)
Q Consensus        86 ~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~----------~~~~~-~~~~~~~~~~  138 (157)
                      ...                ..++.++++++.+.+ ++++|++||..+|+..+..          ...+. ..|+.+|...
T Consensus        59 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~  137 (306)
T PLN02725         59 KVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG-VKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAG  137 (306)
T ss_pred             eecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC-CCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHH
Confidence            531                445889999999988 8899999999998743221          01122 3499999988


Q ss_pred             hHHHHH
Q 040431          139 QKIFIY  144 (157)
Q Consensus       139 ~~~~~~  144 (157)
                      +.....
T Consensus       138 e~~~~~  143 (306)
T PLN02725        138 IKMCQA  143 (306)
T ss_pred             HHHHHH
Confidence            876433

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.70  E-value=5.3e-16  Score=119.42  Aligned_cols=139  Identities=12%  Similarity=0.202  Sum_probs=100.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCC-Cchhh-Hhhhh-------cCCCeEEEEccCCCh------H
Q 040431            6 KILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISG-PSKSQ-LLDHF-------KNLGVNLVIGDVLNH------E   68 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~-~~~~~-~~~~~-------~~~~v~~~~~D~~~~------~   68 (157)
                      +|+|||||||+|++++++|+++|  ++|++++|+..... .++++ .+...       ...++.++.+|++++      +
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58999999999999999999998  67999999843210 00111 11110       014689999999753      5


Q ss_pred             HHHHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----------cC
Q 040431           69 SLVKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----------MT  125 (157)
Q Consensus        69 ~~~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------~~  125 (157)
                      .+..+..++|+|||+|+...            +.++.++++++.+.+ .++|+++||.++++.....           ..
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~-~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~  159 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGR-AKPLHYVSTISVLAAIDLSTVTEDDAIVTPPP  159 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCC-CceEEEEccccccCCcCCCCcccccccccccc
Confidence            66777788999999999643            566888999999887 7789999999988653211           01


Q ss_pred             CccchhhHhHhhhhHHHHHH
Q 040431          126 TTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~  145 (157)
                      .+...|..+|...+.+....
T Consensus       160 ~~~~~Y~~sK~~~E~~~~~~  179 (367)
T TIGR01746       160 GLAGGYAQSKWVAELLVREA  179 (367)
T ss_pred             ccCCChHHHHHHHHHHHHHH
Confidence            22356999999888875543

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.70  E-value=4.8e-16  Score=114.28  Aligned_cols=128  Identities=15%  Similarity=0.189  Sum_probs=92.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----h-hcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----H-FKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~-~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      +++++||||+|++|++++++|+++|++|++++|+     +++.+.+.    . .....+.++.+|++|++++.++++   
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   76 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARR-----TDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR   76 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     33332221    1 113468889999999998887765   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|++||+||...                   ..+    .+.+.+.+.+.+ .++||++||..+....+    .+.
T Consensus        77 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~----~~~  151 (248)
T PRK08251         77 DELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLISSVSAVRGLP----GVK  151 (248)
T ss_pred             HHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEeccccccCCC----CCc
Confidence                5899999998643                   112    233334445555 67999999976554322    234


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       152 ~~Y~~sK~a~~~~  164 (248)
T PRK08251        152 AAYAASKAGVASL  164 (248)
T ss_pred             ccHHHHHHHHHHH
Confidence            6788888876555

>PRK05717 oxidoreductase; Validated

Probab=99.70  E-value=1.4e-15  Score=112.50  Aligned_cols=131  Identities=8%  Similarity=0.007  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||+++++.|+++|++|++++|+     ..+...+.......+.++.+|++|++++.+++.       .
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD-----RERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999887     333322222223467889999999988876654       4


Q ss_pred             cCEEEEcCCCcc---------------------hHHHHHHHHHHHH---hcCCccEEEeccccccccCCCccCCccchhh
Q 040431           77 VDVVISTVGHTL---------------------LADQVKIIAAIKE---AEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 ~d~vv~~a~~~~---------------------~~~~~~l~~~~~~---~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      +|++||+||...                     ..++..+++++..   .. .+++|++||...+...+     ....|.
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~g~ii~~sS~~~~~~~~-----~~~~Y~  158 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH-NGAIVNLASTRARQSEP-----DTEAYA  158 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CcEEEEEcchhhcCCCC-----CCcchH
Confidence            799999999752                     2235556666542   22 36899999977654322     245799


Q ss_pred             HhHhhhhHHHHHH
Q 040431          133 MTELIDQKIFIYF  145 (157)
Q Consensus       133 ~~~~~~~~~~~~~  145 (157)
                      .+|.+.+.+....
T Consensus       159 ~sKaa~~~~~~~l  171 (255)
T PRK05717        159 ASKGGLLALTHAL  171 (255)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998877664433

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.70  E-value=1.3e-15  Score=112.05  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=94.7

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh-cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF-KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~-~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +.++++||||+|++|++++++|++.|++|+++.|+.     +..+.. .+. ...++.++.+|++|++++.++++     
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~   78 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA-----EAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAAR   78 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH-----HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999999883     322211 111 23458899999999999988765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||++|...                   ..+    .+.+++++.+.+ .++|+++||.......     .....
T Consensus        79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~~~~~~~-----~~~~~  152 (252)
T PRK06138         79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG-GGSIVNTASQLALAGG-----RGRAA  152 (252)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-CeEEEEECChhhccCC-----CCccH
Confidence              6899999999743                   111    344555566666 6899999997654322     23457


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       153 Y~~sK~a~~~~~~  165 (252)
T PRK06138        153 YVASKGAIASLTR  165 (252)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888877666533

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.70  E-value=2.2e-16  Score=118.55  Aligned_cols=100  Identities=20%  Similarity=0.145  Sum_probs=84.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh------cC-cC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI------KQ-VD   78 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~------~~-~d   78 (157)
                      +|+||||||++|++++++|++.|++|++++|++...           ...+++.+.+|+.|++++.+++      ++ +|
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~-----------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d   69 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS-----------AGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEIS   69 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc-----------cCCCCccccccCCCHHHHHHHHhcccCcCCcee
Confidence            589999999999999999999999999999995432           1235677889999999999998      56 99


Q ss_pred             EEEEcCCCcc--hHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           79 VVISTVGHTL--LADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        79 ~vv~~a~~~~--~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      .++++++...  .....++++++++.| +++||++||.+.+
T Consensus        70 ~v~~~~~~~~~~~~~~~~~i~aa~~~g-v~~~V~~Ss~~~~  109 (285)
T TIGR03649        70 AVYLVAPPIPDLAPPMIKFIDFARSKG-VRRFVLLSASIIE  109 (285)
T ss_pred             EEEEeCCCCCChhHHHHHHHHHHHHcC-CCEEEEeeccccC
Confidence            9999987543  456788999999998 9999999987654

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.70  E-value=9.4e-16  Score=112.35  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=95.0

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +|++++||||+|++|++++++|+++|++|++++|+     +++.+.+. +.  ...++.++.+|++|++++.++++    
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARS-----QDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE   79 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999998     33332221 11  13468889999999998877765    


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+|||++|...                       ....+.+++.+.+.+ .++++++||...+...     ....
T Consensus        80 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~  153 (241)
T PRK07454         80 QFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSSIAARNAF-----PQWG  153 (241)
T ss_pred             HcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCcCC-----CCcc
Confidence               4899999999742                       112344555566665 6899999998776532     2345


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       154 ~Y~~sK~~~~~~~  166 (241)
T PRK07454        154 AYCVSKAALAAFT  166 (241)
T ss_pred             HHHHHHHHHHHHH
Confidence            6888888776653

>PRK06196 oxidoreductase; Provisional

Probab=99.69  E-value=1.2e-15  Score=116.29  Aligned_cols=131  Identities=18%  Similarity=0.193  Sum_probs=95.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.. .+.  ..+.++.+|++|.+++.+++.       
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~-----~~~~~~~~~~l--~~v~~~~~Dl~d~~~v~~~~~~~~~~~~   98 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR-----PDVAREALAGI--DGVEVVMLDLADLESVRAFAERFLDSGR   98 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHh--hhCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999999999998     4443322 222  247889999999999887764       


Q ss_pred             CcCEEEEcCCCcc---------------------hHHHHHHHHHHHHhcCCccEEEecccccccc-CCCc------cCCc
Q 040431           76 QVDVVISTVGHTL---------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSS-LSSE------MTTT  127 (157)
Q Consensus        76 ~~d~vv~~a~~~~---------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~-~~~~------~~~~  127 (157)
                      ++|+||||||...                     ...++.+++.+.+.+ .+++|++||.+.... .+..      ...+
T Consensus        99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~  177 (315)
T PRK06196         99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSSAGHRRSPIRWDDPHFTRGYDK  177 (315)
T ss_pred             CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECCHHhccCCCCccccCccCCCCh
Confidence            5899999999742                     112556666777765 579999999765321 1100      1223


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       178 ~~~Y~~SK~a~~~~~  192 (315)
T PRK06196        178 WLAYGQSKTANALFA  192 (315)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            467999999876663

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.69  E-value=6.3e-16  Score=115.67  Aligned_cols=128  Identities=13%  Similarity=0.172  Sum_probs=91.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hh-cCCCeEEEEccCCChHHHHHHhc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HF-KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~-~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |+ +++++||||+|++|+++++.|+++|++|++++|+.     +..+.+.    .. .+.++.++.+|++|++++.+ +.
T Consensus         1 ~~-~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~   73 (280)
T PRK06914          1 MN-KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP-----EKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQ   73 (280)
T ss_pred             CC-CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH-----HHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HH
Confidence            54 67899999999999999999999999999999883     3322221    11 12468899999999988776 43


Q ss_pred             -------CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccC
Q 040431           76 -------QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 -------~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                             ++|+|||++|...                   ..++    +.+++++++.+ .++|+++||..+....     
T Consensus        74 ~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS~~~~~~~-----  147 (280)
T PRK06914         74 LVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK-SGKIINISSISGRVGF-----  147 (280)
T ss_pred             HHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECcccccCCC-----
Confidence                   5799999998743                   1123    33344456665 6799999997554332     


Q ss_pred             CccchhhHhHhhhhHH
Q 040431          126 TTLDMLEMTELIDQKI  141 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~  141 (157)
                      .....|..+|.+.+.+
T Consensus       148 ~~~~~Y~~sK~~~~~~  163 (280)
T PRK06914        148 PGLSPYVSSKYALEGF  163 (280)
T ss_pred             CCCchhHHhHHHHHHH
Confidence            2345788888877665

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.69  E-value=1.4e-15  Score=116.17  Aligned_cols=109  Identities=12%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||.++++.|++.|++|++++|+     .++.+.+ ++.  ...++.++.+|++|.+++.++++     
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGWHVIMACRN-----LKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999987     4443322 222  13468889999999999888775     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcC-CccEEEecccccc
Q 040431           76 --QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEG-ASRGTLRTQKGKM  117 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~-~~~~v~~Ss~~~~  117 (157)
                        .+|+||||||...                    ..+    ++.+++.+.+.+. .++||++||...+
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~  149 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTAN  149 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccC
Confidence              3899999999531                    111    3344455555431 2599999997654

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.69  E-value=1.9e-15  Score=111.95  Aligned_cols=127  Identities=13%  Similarity=0.085  Sum_probs=93.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh----cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF----KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~----~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||.++++.|+++|++|++++|+.     ++.+.+ ++.    ...++.++.+|++|++++.++++   
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   81 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDA-----ALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE   81 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999973     333222 121    23467889999999998888775   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          .+|++||+||...                       ....+.+++.+.+.+ .++||++||...+...+     ..
T Consensus        82 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~-----~~  155 (260)
T PRK07063         82 EAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIASTHAFKIIP-----GC  155 (260)
T ss_pred             HHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECChhhccCCC-----Cc
Confidence                5899999999642                       112344555555555 57999999976654322     23


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       156 ~~Y~~sKaa~~~~  168 (260)
T PRK07063        156 FPYPVAKHGLLGL  168 (260)
T ss_pred             hHHHHHHHHHHHH
Confidence            4688888876666

>PRK06398 aldose dehydrogenase; Validated

Probab=99.69  E-value=2e-15  Score=112.02  Aligned_cols=119  Identities=14%  Similarity=0.143  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+...             ..++.++.+|++|++++.++++       +
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   72 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-------------YNDVDYFKVDVSNKEQVIKGIDYVISKYGR   72 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc-------------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999999987432             1257889999999999888765       5


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..+    .+.+++.+.+.+ .+++|++||..++...     .....|..
T Consensus        73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  146 (258)
T PRK06398         73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD-KGVIINIASVQSFAVT-----RNAAAYVT  146 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeCcchhccCC-----CCCchhhh
Confidence            899999999743                   112    344455555555 6899999998776432     23457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       147 sKaal~~~  154 (258)
T PRK06398        147 SKHAVLGL  154 (258)
T ss_pred             hHHHHHHH
Confidence            88876655

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.69  E-value=2.2e-15  Score=111.28  Aligned_cols=128  Identities=11%  Similarity=0.080  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARR-----QAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER   80 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999998     3333322 121  13468889999999999888775     


Q ss_pred             --CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        .+|++||+||...                        ....+.+++.+.+.+ .++++++||..++...    .....
T Consensus        81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~~~~~~----~~~~~  155 (254)
T PRK07478         81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFVGHTAG----FPGMA  155 (254)
T ss_pred             cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechHhhccC----CCCcc
Confidence              5899999999742                        122445566666665 6789999997665311    12356


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       156 ~Y~~sK~a~~~~  167 (254)
T PRK07478        156 AYAASKAGLIGL  167 (254)
T ss_pred             hhHHHHHHHHHH
Confidence            788888877666

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.69  E-value=1.8e-15  Score=116.42  Aligned_cols=127  Identities=13%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||+++++.|++.|++|++++|+     +++++.+. +.  ...++.++.+|++|+++++++++     
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~-----~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGAKVVLLARG-----EEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999988     44433221 11  23467889999999999988764     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|++|||||...                       +..++.+++.+.+.+ .++||++||..++...+     ....
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS~~~~~~~~-----~~~~  156 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGSALAYRSIP-----LQSA  156 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCChhhccCCC-----cchH
Confidence              5899999999742                       234566777777776 68999999988876432     2457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       157 Y~asK~a~~~~  167 (334)
T PRK07109        157 YCAAKHAIRGF  167 (334)
T ss_pred             HHHHHHHHHHH
Confidence            88888876555

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.68  E-value=2.4e-15  Score=110.62  Aligned_cols=126  Identities=12%  Similarity=0.080  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|++|++++++|++.|++|++++|+.     ...+.+ ++.  ....+..+.+|++|.+++.++++     
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINA-----EGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA   80 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999873     222211 111  12356788999999998877765     


Q ss_pred             --CcCEEEEcCCCcc----------------------hHHHHHHHHHHH----HhcCCccEEEeccccccccCCCccCCc
Q 040431           76 --QVDVVISTVGHTL----------------------LADQVKIIAAIK----EAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 --~~d~vv~~a~~~~----------------------~~~~~~l~~~~~----~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                        .+|+|||+||...                      +.++.++++++.    +.+ .++|+++||..++.        +
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--------~  151 (250)
T PRK07774         81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRG-GGAIVNQSSTAAWL--------Y  151 (250)
T ss_pred             hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC-CcEEEEEecccccC--------C
Confidence              5899999999631                      222344444443    434 57999999987764        2


Q ss_pred             cchhhHhHhhhhHHHH
Q 040431          128 LDMLEMTELIDQKIFI  143 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~~  143 (157)
                      ...|..+|.+.+.+..
T Consensus       152 ~~~Y~~sK~a~~~~~~  167 (250)
T PRK07774        152 SNFYGLAKVGLNGLTQ  167 (250)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            4578899887776633

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.68  E-value=2.3e-15  Score=112.76  Aligned_cols=127  Identities=17%  Similarity=0.165  Sum_probs=91.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||+++++.|++.|++|++.+|+.     +.++.+ ++..  ..++.++.+|++|++++.+++.     
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~-----~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   80 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDK-----PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL   80 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999998883     333221 2221  2357889999999999988765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+||||||...                   +.+    ++.+++.+.+.+..++||++||..++...     .....
T Consensus        81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~-----~~~~~  155 (275)
T PRK05876         81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN-----AGLGA  155 (275)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC-----CCCch
Confidence              4799999999743                   112    33444444455423689999998776432     33567


Q ss_pred             hhHhHhhhhH
Q 040431          131 LEMTELIDQK  140 (157)
Q Consensus       131 ~~~~~~~~~~  140 (157)
                      |..+|.+...
T Consensus       156 Y~asK~a~~~  165 (275)
T PRK05876        156 YGVAKYGVVG  165 (275)
T ss_pred             HHHHHHHHHH
Confidence            8888875433

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.68  E-value=2e-15  Score=111.10  Aligned_cols=127  Identities=13%  Similarity=0.075  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-h--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-F--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|++|++++++|+++|++|++++|+     ++..+.+.. .  ...++.++.+|+.|++++.++++     
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   75 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLG-----EAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAE   75 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            3589999999999999999999999999999998     333332221 1  23468889999999997765543     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||+++...                   ..+    .+.+++.+.+.+ .++++++||...+...+     ....
T Consensus        76 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~~-----~~~~  149 (255)
T TIGR01963        76 FGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIASAHGLVASP-----FKSA  149 (255)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcchhhcCCCC-----CCch
Confidence              5899999998743                   112    233444445666 78999999976654322     2356


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       150 y~~sk~a~~~~  160 (255)
T TIGR01963       150 YVAAKHGLIGL  160 (255)
T ss_pred             hHHHHHHHHHH
Confidence            77777655544

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.68  E-value=1.8e-15  Score=111.81  Aligned_cols=128  Identities=17%  Similarity=0.204  Sum_probs=92.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|++|++++++|+++|++|++++|+     +++.+.+ ....  +.++.++.+|++|++++.++++     
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD-----PAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE   84 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            4799999999999999999999999999999987     3333221 2221  2357889999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|+|||++|...                   ..++..+++++    .+.+ .++||++||.......     .....
T Consensus        85 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~~~-----~~~~~  158 (255)
T PRK07523         85 IGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARG-AGKIINIASVQSALAR-----PGIAP  158 (255)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEEccchhccCC-----CCCcc
Confidence              4899999999753                   12233444444    3444 6799999997654322     23557


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       159 y~~sK~a~~~~~  170 (255)
T PRK07523        159 YTATKGAVGNLT  170 (255)
T ss_pred             HHHHHHHHHHHH
Confidence            888888766653

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.68  E-value=2.2e-15  Score=110.59  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--------   75 (157)
                      ||+++||||+|+||++++++|+++|++|++++|+....       +......++.++.+|+.|++++++++.        
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   73 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS-------LAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFV   73 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh-------hhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhc
Confidence            45899999999999999999999999999999874321       111123468889999999998887432        


Q ss_pred             ---CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ---QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ---~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                         .+|++|||+|...                    ..+    .+.+.+.+.+.+ .++|+++||..++...     ...
T Consensus        74 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~  147 (243)
T PRK07023         74 DGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAA-ERRILHISSGAARNAY-----AGW  147 (243)
T ss_pred             cCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccC-CCEEEEEeChhhcCCC-----CCc
Confidence               4789999998743                    111    444555555554 5799999998766432     235


Q ss_pred             chhhHhHhhhhHHHHHH
Q 040431          129 DMLEMTELIDQKIFIYF  145 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~~~  145 (157)
                      ..|..+|.+.+.+...+
T Consensus       148 ~~Y~~sK~a~~~~~~~~  164 (243)
T PRK07023        148 SVYCATKAALDHHARAV  164 (243)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            67999998887774433

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.68  E-value=8.1e-16  Score=117.28  Aligned_cols=142  Identities=13%  Similarity=0.176  Sum_probs=109.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCc--hhh-------HhhhhcCCCeEEEEccCC------ChH
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPS--KSQ-------LLDHFKNLGVNLVIGDVL------NHE   68 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~--~~~-------~~~~~~~~~v~~~~~D~~------~~~   68 (157)
                      +++++||||||+|.+++..|+..-. +|+|++|..+.. ..  +++       .+++....+|+++.+|+.      +..
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E-~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~   79 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDE-AALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER   79 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHH-HHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence            4799999999999999999999864 999999986642 11  111       122344578999999997      456


Q ss_pred             HHHHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-------------
Q 040431           69 SLVKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-------------  123 (157)
Q Consensus        69 ~~~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------------  123 (157)
                      .+.++...+|.|||+++-.+            +.++..+++.+...+ .+.+.|+||++++......             
T Consensus        80 ~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk-~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~  158 (382)
T COG3320          80 TWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGK-PKPLHYVSSISVGETEYYSNFTVDFDEISPTR  158 (382)
T ss_pred             HHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCC-CceeEEEeeeeeccccccCCCccccccccccc
Confidence            67777788999999999876            778999999999886 6779999999986432111             


Q ss_pred             --cCCccchhhHhHhhhhHHHHHHHhc
Q 040431          124 --MTTTLDMLEMTELIDQKIFIYFWGR  148 (157)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~~~~  148 (157)
                        ...+...|+.+|.+.|++...+-..
T Consensus       159 ~~~~~~~~GY~~SKwvaE~Lvr~A~~r  185 (382)
T COG3320         159 NVGQGLAGGYGRSKWVAEKLVREAGDR  185 (382)
T ss_pred             cccCccCCCcchhHHHHHHHHHHHhhc
Confidence              1456688999999999996666554

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.68  E-value=2.9e-15  Score=111.28  Aligned_cols=126  Identities=12%  Similarity=0.124  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+.+....++.++.+|++|++++.++++       .
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   80 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDID-----ADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGR   80 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999999999999998     433333332224468899999999999888775       5


Q ss_pred             cCEEEEcCCCcc------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           77 VDVVISTVGHTL------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        77 ~d~vv~~a~~~~------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      +|++|||||...                  ..+    .+.+++.+. .+ .++||++||.......+     ....|..+
T Consensus        81 id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~-~g~ii~isS~~~~~~~~-----~~~~Y~as  153 (261)
T PRK08265         81 VDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA-RG-GGAIVNFTSISAKFAQT-----GRWLYPAS  153 (261)
T ss_pred             CCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cC-CcEEEEECchhhccCCC-----CCchhHHH
Confidence            799999999642                  111    333344444 33 47899999976643322     23467777


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      |.+.+.+
T Consensus       154 Kaa~~~~  160 (261)
T PRK08265        154 KAAIRQL  160 (261)
T ss_pred             HHHHHHH
Confidence            7766555

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.68  E-value=3.1e-15  Score=111.18  Aligned_cols=127  Identities=14%  Similarity=0.127  Sum_probs=92.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|+++|++|++++|+     +++.+.+. ..  ...++.++.+|+++++++.+++.     
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAART-----ESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     33333221 11  13468889999999999887765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHH----H-hcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIK----E-AEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~----~-~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|+|||+||...                   ..++..+.+++.    + .+ .++++++||..+....     ....
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~-----~~~~  158 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSG-GGSVINISSTMGRLAG-----RGFA  158 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcC-CeEEEEEccccccCCC-----CCCc
Confidence              5899999998632                   223445555544    3 33 5789999997654321     3356


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       159 ~Y~~sK~a~~~~  170 (263)
T PRK07814        159 AYGTAKAALAHY  170 (263)
T ss_pred             hhHHHHHHHHHH
Confidence            799999877666

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.68  E-value=3.1e-15  Score=109.46  Aligned_cols=131  Identities=16%  Similarity=0.115  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||||++|++++++|++.|++|++++|++........+.+. .....+.++.+|++|++++.++++       +
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIG-ALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH-hcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999999999998888874311001111111 123468889999999998887765       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHH----HhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIK----EAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~----~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||++|...                   ..+...+.+++.    +.+ .++|+++||.......+     ....|..
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~iss~~~~~~~~-----~~~~y~~  157 (248)
T PRK05557         84 VDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQR-SGRIINISSVVGLMGNP-----GQANYAA  157 (248)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEEcccccCcCCC-----CCchhHH
Confidence            899999998743                   222344444443    444 57899999975443221     2456777


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       158 sk~a~~~~  165 (248)
T PRK05557        158 SKAGVIGF  165 (248)
T ss_pred             HHHHHHHH
Confidence            77766554

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.68  E-value=1.1e-15  Score=116.53  Aligned_cols=137  Identities=10%  Similarity=0.113  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+++||.+++++|++.|++|+++.|+.... .+..+.+... ...++.++.+|+.|.+++.++++       
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKG-EAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            57999999999999999999999999999999983321 1111222221 23468899999999999987765       


Q ss_pred             CcCEEEEcCCCcc----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccC-CCc------cCC
Q 040431           76 QVDVVISTVGHTL----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL-SSE------MTT  126 (157)
Q Consensus        76 ~~d~vv~~a~~~~----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~-~~~------~~~  126 (157)
                      .+|++|||||...                      ..-++.+++.+.+.  ..++|++||....... ...      ...
T Consensus        93 ~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~~~  170 (313)
T PRK05854         93 PIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERSYA  170 (313)
T ss_pred             CccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCcccccccccCc
Confidence            4899999999753                      11134444545443  4689999997654321 100      123


Q ss_pred             ccchhhHhHhhhhHHHH
Q 040431          127 TLDMLEMTELIDQKIFI  143 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~~  143 (157)
                      +...|..+|.+...+..
T Consensus       171 ~~~~Y~~SK~a~~~~~~  187 (313)
T PRK05854        171 GMRAYSQSKIAVGLFAL  187 (313)
T ss_pred             chhhhHHHHHHHHHHHH
Confidence            45679999998877643

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.68  E-value=1.9e-15  Score=112.60  Aligned_cols=126  Identities=9%  Similarity=0.070  Sum_probs=93.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      |+++||||+|+||++++++|++.|++|++++|+     .++.+.+ .+.  ...++.++.+|++|++++.++++      
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~   75 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVN-----EEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKW   75 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            479999999999999999999999999999987     3333221 111  13468889999999998887765      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|+|||++|...                       ...++.+++.+.+.+ .++|+++||..++...+     ....|
T Consensus        76 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~~~~~~~~-----~~~~Y  149 (270)
T PRK05650         76 GGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASMAGLMQGP-----AMSSY  149 (270)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECChhhcCCCC-----CchHH
Confidence             5899999999753                       122445666667766 68999999987665332     34678


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+.+.+
T Consensus       150 ~~sKaa~~~~  159 (270)
T PRK05650        150 NVAKAGVVAL  159 (270)
T ss_pred             HHHHHHHHHH
Confidence            8888875555

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.68  E-value=4.4e-15  Score=109.58  Aligned_cols=127  Identities=15%  Similarity=0.170  Sum_probs=91.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.++++.|++.|++|++++|+.     ...+...+.....+.++.+|+++++++.+++.       +
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   89 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE-----DVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR   89 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999873     22222233334457789999999998887765       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||++|...                   ..+...++++    +.+.+ .++|+++||.......+     ....|..
T Consensus        90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~-----~~~~Y~~  163 (255)
T PRK06841         90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG-GGKIVNLASQAGVVALE-----RHVAYCA  163 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC-CceEEEEcchhhccCCC-----CCchHHH
Confidence            799999999753                   1223334444    44445 67999999976543222     2346888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       164 sK~a~~~~  171 (255)
T PRK06841        164 SKAGVVGM  171 (255)
T ss_pred             HHHHHHHH
Confidence            88765554

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.68  E-value=3e-15  Score=110.81  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|+++|++|++++|+     .++.+.+ ++.  .+.++.++.+|++|++++.+++.     
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~   86 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARK-----AEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER   86 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999987     3333222 111  13457889999999999976654     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHh-----cCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEA-----EGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~-----~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        .+|+|||+||...                   ..++..+++++...     + .++|+++||...+...+.. ..+..
T Consensus        87 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~-~~~~v~~sS~~~~~~~~~~-~~~~~  164 (259)
T PRK08213         87 FGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRG-YGRIINVASVAGLGGNPPE-VMDTI  164 (259)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcC-CeEEEEECChhhccCCCcc-ccCcc
Confidence              5899999999642                   23355566655433     4 5789999997665433321 13446


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       165 ~Y~~sKa~~~~~~~  178 (259)
T PRK08213        165 AYNTSKGAVINFTR  178 (259)
T ss_pred             hHHHHHHHHHHHHH
Confidence            78888888777643

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.67  E-value=2e-15  Score=111.78  Aligned_cols=132  Identities=17%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~   76 (157)
                      .++++||||+|++|++++++|+++| ++|++++|+.+....+..+.+......++.++.+|++|++++.++++      +
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g~   87 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGGD   87 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcCC
Confidence            5789999999999999999999995 89999999843200111222222223468999999999888665554      6


Q ss_pred             cCEEEEcCCCcch-----------------------HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTLL-----------------------ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~~-----------------------~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++||++|....                       ...+.+++++.+.+ .++|+++||..+....     .....|..
T Consensus        88 id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS~~g~~~~-----~~~~~Y~~  161 (253)
T PRK07904         88 VDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSSVAGERVR-----RSNFVYGS  161 (253)
T ss_pred             CCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEechhhcCCC-----CCCcchHH
Confidence            9999999988530                       11345777788777 7899999998654322     22346888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       162 sKaa~~~~  169 (253)
T PRK07904        162 TKAGLDGF  169 (253)
T ss_pred             HHHHHHHH
Confidence            88876544

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.67  E-value=2.9e-15  Score=111.89  Aligned_cols=133  Identities=14%  Similarity=0.178  Sum_probs=93.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+.... ....+.+.... ..++.++.+|+.|++++.++++       
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKL-AAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47999999999999999999999999999999873211 01111111111 2468889999999998888776       


Q ss_pred             CcCEEEEcCCCcc--------------------hHHHHHHH----HHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 QVDVVISTVGHTL--------------------LADQVKII----AAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 ~~d~vv~~a~~~~--------------------~~~~~~l~----~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      ++|++||++|...                    ..+...++    +.+.+.+ .++|+++||...+...     .+...|
T Consensus        86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~~sS~~~~~~~-----~~~~~Y  159 (276)
T PRK05875         86 RLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGG-GGSFVGISSIAASNTH-----RWFGAY  159 (276)
T ss_pred             CCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechhhcCCC-----CCCcch
Confidence            6899999998531                    11222333    3344444 4689999998765432     235678


Q ss_pred             hHhHhhhhHHHH
Q 040431          132 EMTELIDQKIFI  143 (157)
Q Consensus       132 ~~~~~~~~~~~~  143 (157)
                      ..+|.+.+.+..
T Consensus       160 ~~sK~a~~~~~~  171 (276)
T PRK05875        160 GVTKSAVDHLMK  171 (276)
T ss_pred             HHHHHHHHHHHH
Confidence            999988777743

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.67  E-value=2.5e-15  Score=109.77  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=90.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|++|++++++|+++|++|++++|++     ++.+.+ .+.  ...++.++.+|+.|++++.++++     
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE-----EAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEA   79 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh-----hHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999983     332222 111  23468888999999998887775     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|+|||++|...                   +....++++++    .+.+ .++|+++||.......     .+...
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~~~ii~~ss~~~~~~~-----~~~~~  153 (246)
T PRK05653         80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKAR-YGRIVNISSVSGVTGN-----PGQTN  153 (246)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhccCC-----CCCcH
Confidence              3699999998753                   12233444444    4555 6899999997654321     23456


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       154 y~~sk~~~~~~  164 (246)
T PRK05653        154 YSAAKAGVIGF  164 (246)
T ss_pred             hHhHHHHHHHH
Confidence            77777765554

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.67  E-value=4.1e-15  Score=108.88  Aligned_cols=127  Identities=13%  Similarity=0.051  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|++|++++++|+++|+.|++..|+     .++.+.+......++.++.+|++|.+++.+++.       +
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR-----VEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEG   80 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999988887776     444443322223468889999999999887754       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+||...                   ..+...++++    +.+.+ .++||++||..+....+     ....|..
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~-----~~~~Y~~  154 (245)
T PRK12936         81 VDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRR-YGRIINITSVVGVTGNP-----GQANYCA  154 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhC-CCEEEEECCHHhCcCCC-----CCcchHH
Confidence            899999999742                   1223333343    33444 57899999976554322     2345777


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       155 sk~a~~~~  162 (245)
T PRK12936        155 SKAGMIGF  162 (245)
T ss_pred             HHHHHHHH
Confidence            77654444

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.67  E-value=3.6e-15  Score=110.15  Aligned_cols=130  Identities=10%  Similarity=0.074  Sum_probs=92.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|++     +..+.+ .+..  ..++.++.+|++|++++..+++     
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA-----ERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999873     333222 2221  3468899999999999887764     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCccchh
Q 040431           76 --QVDVVISTVGHTL--------------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                        ++|+|||+||...                    ..+...+++++....  ..++|+++||.......     .....|
T Consensus        80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~-----~~~~~Y  154 (258)
T PRK07890         80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQ-----PKYGAY  154 (258)
T ss_pred             cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCC-----CCcchh
Confidence              5899999998642                    222344555544321  02589999997665432     234578


Q ss_pred             hHhHhhhhHHHH
Q 040431          132 EMTELIDQKIFI  143 (157)
Q Consensus       132 ~~~~~~~~~~~~  143 (157)
                      ..+|.+.+.+..
T Consensus       155 ~~sK~a~~~l~~  166 (258)
T PRK07890        155 KMAKGALLAASQ  166 (258)
T ss_pred             HHHHHHHHHHHH
Confidence            888887766633

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.67  E-value=3.6e-15  Score=110.40  Aligned_cols=123  Identities=17%  Similarity=0.174  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....           ....+.++.+|++|++++.++++       +
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD-----------LPEGVEFVAADLTTAEGCAAVARAVLERLGG   77 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh-----------cCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999874321           13357889999999998876653       5


Q ss_pred             cCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           77 VDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      +|+|||+||...                         ....+.+++.+.+.+ .+++|++||...+...+    .....|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~~~~----~~~~~Y  152 (260)
T PRK06523         78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSIQRRLPLP----ESTTAY  152 (260)
T ss_pred             CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEecccccCCCC----CCcchh
Confidence            899999999531                         111344556666665 57899999977654321    245678


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       153 ~~sK~a~~~l~  163 (260)
T PRK06523        153 AAAKAALSTYS  163 (260)
T ss_pred             HHHHHHHHHHH
Confidence            88888776663

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.67  E-value=4.1e-15  Score=109.28  Aligned_cols=127  Identities=17%  Similarity=0.174  Sum_probs=92.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|++|++++++|++.|++|++++|+.     +..+.+. +.  ...++.++.+|++|.+++++++.     
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   77 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR-----EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA   77 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH-----HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999998873     3322221 11  23468899999999999888775     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHH----HHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVK----IIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++||++|...                   ..+...    +.+.+.+.+ .++++++||.+++...+     ....
T Consensus        78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~iss~~~~~~~~-----~~~~  151 (250)
T TIGR03206        78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIASDAARVGSS-----GEAV  151 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEECchhhccCCC-----CCch
Confidence              5899999998532                   122333    344444555 68999999987765432     2446


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       152 Y~~sK~a~~~~  162 (250)
T TIGR03206       152 YAACKGGLVAF  162 (250)
T ss_pred             HHHHHHHHHHH
Confidence            88888765555

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.67  E-value=4.8e-15  Score=108.70  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=94.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +|+++||||+|+||+++++.|+++|++|+++.|..... .+..+.+ .+.  ...++.++.+|+.|++++.++++     
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRG-RAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE   84 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCccccc-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999988754332 2232222 111  13468899999999999888764     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHH-----HhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIK-----EAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~-----~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|+|||++|...                   ..+...+++++.     +.+ .++++++||...+...     ....
T Consensus        85 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~  158 (249)
T PRK12827         85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARR-GGRIVNIASVAGVRGN-----RGQV  158 (249)
T ss_pred             hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC-CeEEEEECCchhcCCC-----CCCc
Confidence              5899999999753                   233555666655     444 5789999998776432     2345


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       159 ~y~~sK~a~~~~  170 (249)
T PRK12827        159 NYAASKAGLIGL  170 (249)
T ss_pred             hhHHHHHHHHHH
Confidence            788888776555

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.67  E-value=3.9e-15  Score=110.52  Aligned_cols=126  Identities=18%  Similarity=0.154  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+......++.++.+|++|++++.++++       .
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGARVAVLERS-----AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGK   80 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            4799999999999999999999999999999988     444444433334468889999999998887765       5


Q ss_pred             cCEEEEcCCCcc------------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           77 VDVVISTVGHTL------------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        77 ~d~vv~~a~~~~------------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                      +|++||+||...                        ..+    .+.+++.+.+.  .+++|++||...+...+     ..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~~~~-----~~  153 (263)
T PRK06200         81 LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS--GGSMIFTLSNSSFYPGG-----GG  153 (263)
T ss_pred             CCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc--CCEEEEECChhhcCCCC-----CC
Confidence            899999999642                        011    22333333333  36899999987664322     24


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       154 ~~Y~~sK~a~~~~  166 (263)
T PRK06200        154 PLYTASKHAVVGL  166 (263)
T ss_pred             chhHHHHHHHHHH
Confidence            4688888877666

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.67  E-value=4.3e-15  Score=109.86  Aligned_cols=128  Identities=12%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|++|.++++.|+++|++|++++|+     .++.+.+......++.++.+|++|++++.+++.       .
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIK-----PARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGG   80 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999988     444433333223468889999999999888775       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHH----hcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKE----AEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~----~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++||++|...                   ..++..+++++..    .+..++||++||.......     .+...|..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----~~~~~Y~~  155 (257)
T PRK07067         81 IDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGE-----ALVSHYCA  155 (257)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCC-----CCCchhhh
Confidence            899999998643                   2235555555433    2212589999996543221     34567888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       156 sK~a~~~~  163 (257)
T PRK07067        156 TKAAVISY  163 (257)
T ss_pred             hHHHHHHH
Confidence            88876555

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.67  E-value=3.8e-15  Score=109.84  Aligned_cols=129  Identities=10%  Similarity=0.091  Sum_probs=91.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEE-ecCCCCCCCchhh-Hhhhhc--CCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVL-VRESTISGPSKSQ-LLDHFK--NLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~-~r~~~~~~~~~~~-~~~~~~--~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|++|++++++|+++|++|+++ .|+     .++.+ ...+..  ...+.++.+|++|++++.++++    
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~   80 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRN-----KQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKN   80 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC-----HHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHH
Confidence            3799999999999999999999999999775 455     22222 122221  2457889999999999888766    


Q ss_pred             ---------CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCC
Q 040431           76 ---------QVDVVISTVGHTL-------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 ---------~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                               ++|++||+||...                   +.++.++++++... ...++++++||..++...+     
T Consensus        81 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~-----  155 (254)
T PRK12746         81 ELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFT-----  155 (254)
T ss_pred             HhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCC-----
Confidence                     4899999998743                   22344455555442 1135899999987765332     


Q ss_pred             ccchhhHhHhhhhHHH
Q 040431          127 TLDMLEMTELIDQKIF  142 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~  142 (157)
                      ....|..+|.+.+.+.
T Consensus       156 ~~~~Y~~sK~a~~~~~  171 (254)
T PRK12746        156 GSIAYGLSKGALNTMT  171 (254)
T ss_pred             CCcchHhhHHHHHHHH
Confidence            3456888888776663

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.67  E-value=3e-15  Score=109.42  Aligned_cols=104  Identities=32%  Similarity=0.397  Sum_probs=84.3

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcCCC
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGH   86 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a~~   86 (157)
                      |+|+||||.+|+++++.|++.+++|++++|+.+   ....   +.+...+++++.+|+.|++++.++++++|+||++.+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~---~~~~---~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS---SDRA---QQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH---HHHH---HHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc---hhhh---hhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            799999999999999999999999999999942   1122   3333457889999999999999999999999999994


Q ss_pred             ---cchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           87 ---TLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        87 ---~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                         .......++++++++.| +++||+.|....+
T Consensus        75 ~~~~~~~~~~~li~Aa~~ag-Vk~~v~ss~~~~~  107 (233)
T PF05368_consen   75 SHPSELEQQKNLIDAAKAAG-VKHFVPSSFGADY  107 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHHHT--SEEEESEESSGT
T ss_pred             chhhhhhhhhhHHHhhhccc-cceEEEEEecccc
Confidence               44778899999999999 9999976554444

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.67  E-value=4.6e-15  Score=109.68  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=93.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|+++.++.    .+..+.+.   ..++.++.+|++|++++.++++       +
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~----~~~~~~l~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA----ENEAKELR---EKGVFTIKCDVGNRDQVKKSKEVVEKEFGR   79 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHH---hCCCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            37899999999999999999999999999887653    22222222   2257889999999999888775       5


Q ss_pred             cCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+||...                   .    ..++.+++.+.+.+ .+++|++||..++....    .....|..
T Consensus        80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~~~~----~~~~~Y~a  154 (255)
T PRK06463         80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIASNAGIGTAA----EGTTFYAI  154 (255)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHhCCCCC----CCccHhHH
Confidence            899999998742                   1    11456666676665 67999999987764211    23456888


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       155 sKaa~~~~~  163 (255)
T PRK06463        155 TKAGIIILT  163 (255)
T ss_pred             HHHHHHHHH
Confidence            888776663

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.67  E-value=3.8e-15  Score=111.40  Aligned_cols=130  Identities=17%  Similarity=0.176  Sum_probs=93.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|++|+++++.|+++|++|+++.|+.     +....+ .+.  ...++.++.+|++|++++.++++     
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGFPVALGARRV-----EKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEA   84 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999998873     222221 111  12457888999999999988775     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||+||...                   ..++.+++++    +.+.+ .++|+++||...+...+     ....
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~-~g~iv~isS~~~~~~~~-----~~~~  158 (274)
T PRK07775         85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR-RGDLIFVGSDVALRQRP-----HMGA  158 (274)
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECChHhcCCCC-----Ccch
Confidence              5799999999753                   1223334333    33444 57899999987765432     2457


Q ss_pred             hhHhHhhhhHHHHH
Q 040431          131 LEMTELIDQKIFIY  144 (157)
Q Consensus       131 ~~~~~~~~~~~~~~  144 (157)
                      |..+|.+.+.+...
T Consensus       159 Y~~sK~a~~~l~~~  172 (274)
T PRK07775        159 YGAAKAGLEAMVTN  172 (274)
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999888776443

>PRK08643 acetoin reductase; Validated

Probab=99.67  E-value=4.8e-15  Score=109.51  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=90.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||+++++.|+++|++|++++|+.     ++.+.+ .+..  ..++.++.+|++|++++.++++     
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   76 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE-----ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDT   76 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999873     332222 1221  3467889999999998887765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++||+||...                   ..+    .+.+++.+.+.+...+++++||...+...+     ....
T Consensus        77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-----~~~~  151 (256)
T PRK08643         77 FGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNP-----ELAV  151 (256)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCC-----CCch
Confidence              5899999998753                   111    233444444433136899999976554322     2456


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       152 Y~~sK~a~~~~  162 (256)
T PRK08643        152 YSSTKFAVRGL  162 (256)
T ss_pred             hHHHHHHHHHH
Confidence            88888876655

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.67  E-value=4.8e-15  Score=107.97  Aligned_cols=128  Identities=13%  Similarity=0.130  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|++|++++++|+++|++|++++|+....    .+.+.+.....+.++.+|+.|.+++.++++       +
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPL----SQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhH----HHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            47999999999999999999999999999999984221    112222333457788899999998887775       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+++...                   ..++..+++++    .+.+ .++++++||..++...     .....|..
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~y~~  156 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG-GGRIVNIGAGAALKAG-----PGMGAYAA  156 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC-CCEEEEECchHhccCC-----CCcchhHH
Confidence            899999998642                   12233444443    4455 7899999998877543     23456777


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       157 sk~a~~~~  164 (239)
T PRK12828        157 AKAGVARL  164 (239)
T ss_pred             HHHHHHHH
Confidence            77665555

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.67  E-value=4.3e-15  Score=109.81  Aligned_cols=129  Identities=8%  Similarity=0.076  Sum_probs=92.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+++||++++++|+++|++|++++|+..   +...+.++. ...++.++.+|++|++++.++++       +
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~---~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA---PETQAQVEA-LGRKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH---HHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999998877521   111122222 23468889999999999988875       5


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ....+.+++.+.+.+..++||++||...+...+     ....|..
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-----~~~~Y~a  158 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI-----RVPSYTA  158 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC-----CCcchHH
Confidence            899999999753                       112444555555543136899999987765322     2346888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       159 sK~a~~~l  166 (251)
T PRK12481        159 SKSAVMGL  166 (251)
T ss_pred             HHHHHHHH
Confidence            88877666

>PRK09135 pteridine reductase; Provisional

Probab=99.67  E-value=3e-15  Score=109.80  Aligned_cols=136  Identities=12%  Similarity=0.076  Sum_probs=93.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|++|++++++|+++|++|++++|+.....+...+.+.......+.++.+|++|.+++.++++       .
T Consensus         6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (249)
T PRK09135          6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFGR   85 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            368999999999999999999999999999998742210111111222223458889999999999888776       4


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|+|||+||...                   ..++..+++++...  .....++++++.....     ...+...|..+|
T Consensus        86 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Y~~sK  160 (249)
T PRK09135         86 LDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAER-----PLKGYPVYCAAK  160 (249)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcC-----CCCCchhHHHHH
Confidence            799999999632                   33466677766432  1124566666533221     134567899999


Q ss_pred             hhhhHHHHH
Q 040431          136 LIDQKIFIY  144 (157)
Q Consensus       136 ~~~~~~~~~  144 (157)
                      .+.+.+...
T Consensus       161 ~~~~~~~~~  169 (249)
T PRK09135        161 AALEMLTRS  169 (249)
T ss_pred             HHHHHHHHH
Confidence            988877443

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.67  E-value=2.4e-15  Score=111.66  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... .+..+.+.+. ...++.++.+|++|++++.++++       
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERL-ASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999984321 1111112211 12367889999999999887764       


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      .+|++|||||...                       ...++.+++.+.+.+ .++|+++||..+....+     ....|.
T Consensus        87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~-----~~~~y~  160 (265)
T PRK07062         87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNSLLALQPEP-----HMVATS  160 (265)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEeccccccCCCC-----CchHhH
Confidence            5799999999743                       222455666666665 57999999977654322     234566


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+...+
T Consensus       161 asKaal~~~  169 (265)
T PRK07062        161 AARAGLLNL  169 (265)
T ss_pred             HHHHHHHHH
Confidence            666654443

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.67  E-value=4e-15  Score=114.30  Aligned_cols=127  Identities=16%  Similarity=0.162  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     .++++.+. +.  ...++.++.+|++|+++++++++     
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~-----~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGARLVLAARD-----EEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999998     44443222 21  23467788999999999988874     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|++|||||...                       ...++.+++.+.+.+ .++||++||..++...+     ....
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS~~~~~~~p-----~~~~  155 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMISLGGFAAQP-----YAAA  155 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhcCCCC-----Cchh
Confidence              5899999999643                       222455666666665 57899999987665432     2457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+...+
T Consensus       156 Y~asKaal~~~  166 (330)
T PRK06139        156 YSASKFGLRGF  166 (330)
T ss_pred             HHHHHHHHHHH
Confidence            88888876555

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.67  E-value=1.8e-15  Score=112.32  Aligned_cols=129  Identities=13%  Similarity=0.121  Sum_probs=90.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+++||+++++.|++.|++|+++.|+.    .+..+.    ++.....++.++.+|++|++++.+++.    
T Consensus         8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSN----VEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999998876642    222221    221123468899999999999887775    


Q ss_pred             ---CcCEEEEcCCCcc-----------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc
Q 040431           76 ---QVDVVISTVGHTL-----------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~  123 (157)
                         ++|++|||||...                             ...++.+++.+.+.+ .++||++||.......   
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~---  159 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG-GGSIISLSSTGNLVYI---  159 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC-CEEEEEEeccccccCC---
Confidence               4799999997421                             111344555555555 5789999997654322   


Q ss_pred             cCCccchhhHhHhhhhHHH
Q 040431          124 MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (157)
                        .....|..+|.+.+.+.
T Consensus       160 --~~~~~Y~asK~a~~~~~  176 (260)
T PRK08416        160 --ENYAGHGTSKAAVETMV  176 (260)
T ss_pred             --CCcccchhhHHHHHHHH
Confidence              22346788888776663

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.66  E-value=4.7e-15  Score=109.63  Aligned_cols=133  Identities=9%  Similarity=0.014  Sum_probs=93.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+......+..+.+.. ...++.++.+|++|++++.++++       +
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEA-AGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999998742110111111221 13467889999999999888765       4


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ....+.+++.+.+.+ .++++++||...+...+..   ....|..
T Consensus        87 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~~~~---~~~~Y~~  162 (254)
T PRK06114         87 LTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG-GGSIVNIASMSGIIVNRGL---LQAHYNA  162 (254)
T ss_pred             CCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CcEEEEECchhhcCCCCCC---CcchHHH
Confidence            799999999753                       111344555566665 5799999997765432221   2356888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       163 sKaa~~~l  170 (254)
T PRK06114        163 SKAGVIHL  170 (254)
T ss_pred             HHHHHHHH
Confidence            88876655

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=1.4e-15  Score=111.98  Aligned_cols=145  Identities=17%  Similarity=0.204  Sum_probs=110.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh--hhhcCCCeEEEEccCCChHHHHHHhc--CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL--DHFKNLGVNLVIGDVLNHESLVKAIK--QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~   79 (157)
                      +++.||||-||.-|+.|++.|+++|++|+.+.|.++..+..+..+.  ....+..+.++.+|++|...+..+++  ++|-
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE   81 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE   81 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence            6789999999999999999999999999999999777666655221  22334568899999999999999997  7999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcC-CccEEEeccccccccCCCcc------CCccchhhHhHhh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEG-ASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELI  137 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~-~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~  137 (157)
                      |+|+|+++.               .-++.+++++++..+. ..+|...||..-|+......      ..|.+||...|. 
T Consensus        82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKl-  160 (345)
T COG1089          82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL-  160 (345)
T ss_pred             heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHHHHHHH-
Confidence            999999987               4558999999999873 36888889888887653322      345555555544 


Q ss_pred             hhHHHHHHHhccccCCcc
Q 040431          138 DQKIFIYFWGRTLNTGRR  155 (157)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~  155 (157)
                            +.|..++|..+.
T Consensus       161 ------Ya~W~tvNYRes  172 (345)
T COG1089         161 ------YAYWITVNYRES  172 (345)
T ss_pred             ------HHHheeeehHhh
Confidence                  344455554443

>PRK08589 short chain dehydrogenase; Validated

Probab=99.66  E-value=5.6e-15  Score=110.39  Aligned_cols=128  Identities=9%  Similarity=0.017  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.++++.|+++|++|++++|+ ... .+..+.+.+ ...++.++.+|++|++++.+++.       .
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~-~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAV-SETVDKIKS-NGGKAKAYHVDISDEQQVKDFASEIKEQFGR   82 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHH-HHHHHHHHh-cCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999887 211 111112221 13458889999999998887765       4


Q ss_pred             cCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           77 VDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 ~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      +|++|||||...                        ....+.+++.+.+.+  +++|++||...+...+     ....|.
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~~-----~~~~Y~  155 (272)
T PRK08589         83 VDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG--GSIINTSSFSGQAADL-----YRSGYN  155 (272)
T ss_pred             cCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEeCchhhcCCCC-----CCchHH
Confidence            899999999752                        111344555565543  6899999987664322     245788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       156 asKaal~~l  164 (272)
T PRK08589        156 AAKGAVINF  164 (272)
T ss_pred             HHHHHHHHH
Confidence            888876666

>PLN02253 xanthoxin dehydrogenase

Probab=99.66  E-value=5.2e-15  Score=110.79  Aligned_cols=128  Identities=13%  Similarity=0.074  Sum_probs=90.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc-CCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK-NLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~-~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.     +..+.+ .+.. ..++.++++|++|++++.+++.      
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD-----DLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999998873     222222 2221 2368899999999999988876      


Q ss_pred             -CcCEEEEcCCCcc---------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 -QVDVVISTVGHTL---------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 -~~d~vv~~a~~~~---------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                       ++|+|||+||...                     ..++..++++    +.+.+ .++++++||..+....+     ...
T Consensus        93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~~~~-----~~~  166 (280)
T PLN02253         93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLK-KGSIVSLCSVASAIGGL-----GPH  166 (280)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CceEEEecChhhcccCC-----CCc
Confidence             5899999998742                     1223333333    33433 46899998866532211     234


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       167 ~Y~~sK~a~~~~~  179 (280)
T PLN02253        167 AYTGSKHAVLGLT  179 (280)
T ss_pred             ccHHHHHHHHHHH
Confidence            6888888877663

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.66  E-value=5.7e-15  Score=109.33  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=94.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-HhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||.+++++|++.|++|+++.|+. .  .+.+. .+.. ...++.++.+|++|.+++.++++       
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~--~~~~~~~~~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-N--WDETRRLIEK-EGRKVTFVQVDLTKPESAEKVVKEALEEFG   90 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-H--HHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999998872 1  12222 2222 23468899999999999888776       


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      .+|++||++|...                       ...++.+++.+.+.+ .++++++||..++...     .....|.
T Consensus        91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~  164 (258)
T PRK06935         91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASMLSFQGG-----KFVPAYT  164 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCHHhccCC-----CCchhhH
Confidence            5799999999743                       112445556666665 6799999998766432     2245788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       165 asK~a~~~~  173 (258)
T PRK06935        165 ASKHGVAGL  173 (258)
T ss_pred             HHHHHHHHH
Confidence            888877666

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.66  E-value=3.3e-15  Score=109.33  Aligned_cols=129  Identities=16%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~   77 (157)
                      ++++||||+|++|.+++++|++.|++|++++|+.... .+..+.+. ....++.++.+|+++++++.++++       ++
T Consensus         8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~-~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENL-KAVAEEVE-AYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHH-HhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            6899999999999999999999999999999984221 11111121 123468889999999999988876       68


Q ss_pred             CEEEEcCCCcc-------------------hHHHHHHHH----HHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           78 DVVISTVGHTL-------------------LADQVKIIA----AIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        78 d~vv~~a~~~~-------------------~~~~~~l~~----~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      |+|||++|...                   ..++..+.+    .+.+.+ .++++++||...+...+     ....|..+
T Consensus        86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~~~~-----~~~~Y~~s  159 (239)
T PRK07666         86 DILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ-SGDIINISSTAGQKGAA-----VTSAYSAS  159 (239)
T ss_pred             cEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEEcchhhccCCC-----CCcchHHH
Confidence            99999998753                   112223333    344555 57899999977654322     34468888


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      |.+.+.+
T Consensus       160 K~a~~~~  166 (239)
T PRK07666        160 KFGVLGL  166 (239)
T ss_pred             HHHHHHH
Confidence            8766555

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.66  E-value=6.4e-15  Score=108.43  Aligned_cols=131  Identities=13%  Similarity=0.087  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ-------   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-------   76 (157)
                      .++++||||+|+||+++++.|++.|++|+++.++.    ..+.+.+......++.++.+|++|++++.++++.       
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQS----EDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGK   80 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999998876542    2233333222234688899999999998887752       


Q ss_pred             -cCEEEEcCCCcc-------------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCC
Q 040431           77 -VDVVISTVGHTL-------------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        77 -~d~vv~~a~~~~-------------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                       +|++||+||...                         ..+...+++++    .+.+ .++++++||......     ..
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~~-----~~  154 (253)
T PRK08642         81 PITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQG-FGRIINIGTNLFQNP-----VV  154 (253)
T ss_pred             CCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CeEEEEECCccccCC-----CC
Confidence             899999998520                         22234444444    3444 578999998643321     12


Q ss_pred             ccchhhHhHhhhhHHHHH
Q 040431          127 TLDMLEMTELIDQKIFIY  144 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~  144 (157)
                      +...|..+|.+.+.+...
T Consensus       155 ~~~~Y~~sK~a~~~l~~~  172 (253)
T PRK08642        155 PYHDYTTAKAALLGLTRN  172 (253)
T ss_pred             CccchHHHHHHHHHHHHH
Confidence            456899999988777444

>PRK08264 short chain dehydrogenase; Validated

Probab=99.66  E-value=7.7e-15  Score=107.22  Aligned_cols=125  Identities=14%  Similarity=0.101  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~   79 (157)
                      .++++||||+|++|++++++|+++|+ +|++++|+..     +.+.    ...++.++.+|+.|++++.++++   .+|+
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~-----~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~id~   76 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE-----SVTD----LGPRVVPLQLDVTDPASVAAAAEAASDVTI   76 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh-----hhhh----cCCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            46899999999999999999999998 9999998843     2211    23568899999999999988876   4899


Q ss_pred             EEEcCCCcc--------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           80 VISTVGHTL--------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        80 vv~~a~~~~--------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      |||++|...                    ..+...+++++    .+.+ .++|+++||...+...     .....|..+|
T Consensus        77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~~~-----~~~~~y~~sK  150 (238)
T PRK08264         77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANG-GGAIVNVLSVLSWVNF-----PNLGTYSASK  150 (238)
T ss_pred             EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcChhhccCC-----CCchHhHHHH
Confidence            999999821                    22344444443    3444 6789999997766432     2345788888


Q ss_pred             hhhhHHHH
Q 040431          136 LIDQKIFI  143 (157)
Q Consensus       136 ~~~~~~~~  143 (157)
                      .+.+.+..
T Consensus       151 ~a~~~~~~  158 (238)
T PRK08264        151 AAAWSLTQ  158 (238)
T ss_pred             HHHHHHHH
Confidence            87766633

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.66  E-value=6.8e-15  Score=107.20  Aligned_cols=119  Identities=16%  Similarity=0.147  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~~   77 (157)
                      .++++||||+|++|++++++|+++|++|++++|+....             ....++.+|++|++++.+++.      ++
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   69 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD-------------FPGELFACDLADIEQTAATLAQINEIHPV   69 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc-------------cCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999984321             112568899999998887776      58


Q ss_pred             CEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           78 DVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        78 d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      |+|||++|...                       ....+.+++.+.+.+ .++++++||...++.      .....|..+
T Consensus        70 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~------~~~~~Y~~s  142 (234)
T PRK07577         70 DAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLRE-QGRIVNICSRAIFGA------LDRTSYSAA  142 (234)
T ss_pred             cEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccccccCC------CCchHHHHH
Confidence            99999999753                       111444556666666 689999999865542      234578888


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+.+.+.
T Consensus       143 K~a~~~~~  150 (234)
T PRK07577        143 KSALVGCT  150 (234)
T ss_pred             HHHHHHHH
Confidence            88766553

>PRK06128 oxidoreductase; Provisional

Probab=99.66  E-value=5.7e-15  Score=111.88  Aligned_cols=133  Identities=14%  Similarity=0.065  Sum_probs=92.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCch-hhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK-SQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +++++||||+|+||+++++.|++.|++|++..++......+. .+.+.. ...++.++.+|++|++++.++++       
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  133 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA-EGRKAVALPGDLKDEAFCRQLVERAVKELG  133 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999988776532210111 111211 23457889999999998887765       


Q ss_pred             CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 QVDVVISTVGHTL--------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 ~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      ++|+||||||...                    +.++..+++++...- ...+||++||..++...+     ....|..+
T Consensus       134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~-----~~~~Y~as  208 (300)
T PRK06128        134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP-----TLLDYAST  208 (300)
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC-----CchhHHHH
Confidence            5899999999642                    223445556554421 135899999988775432     23468888


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+.+.+.
T Consensus       209 K~a~~~~~  216 (300)
T PRK06128        209 KAAIVAFT  216 (300)
T ss_pred             HHHHHHHH
Confidence            88877663

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.66  E-value=9.5e-15  Score=107.24  Aligned_cols=128  Identities=13%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++...+ ++.  ...++.++.+|++|++++.+++.     
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGL-----AAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999887     3333222 111  13468899999999999888774     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||++|...                   ..+...+++++    .+.+ .++++++||...+...+     ....
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~-----~~~~  155 (250)
T PRK12939         82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSG-RGRIVNLASDTALWGAP-----KLGA  155 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEECchhhccCCC-----Ccch
Confidence              5899999999743                   22233444443    4444 46999999976654322     2346


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       156 y~~sK~~~~~~~  167 (250)
T PRK12939        156 YVASKGAVIGMT  167 (250)
T ss_pred             HHHHHHHHHHHH
Confidence            788887766653

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.66  E-value=7.9e-15  Score=107.78  Aligned_cols=129  Identities=10%  Similarity=0.063  Sum_probs=90.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+..   .+..+.+... ...+.++.+|+++++++.++++       +
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~---~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP---SETQQQVEAL-GRRFLSLTADLSDIEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH---HHHHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            589999999999999999999999999999988631   1112222222 3468899999999999887664       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++||+||...                   ..+...++++    +.+.+..+++|++||..++...+     ....|..
T Consensus        81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-----~~~~Y~~  155 (248)
T TIGR01832        81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI-----RVPSYTA  155 (248)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC-----CCchhHH
Confidence            899999998753                   1122333333    33332136899999987765322     2346888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       156 sKaa~~~~  163 (248)
T TIGR01832       156 SKHGVAGL  163 (248)
T ss_pred             HHHHHHHH
Confidence            88876665

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.66  E-value=8.5e-15  Score=108.70  Aligned_cols=127  Identities=17%  Similarity=0.154  Sum_probs=90.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+.+....++.++.+|+.|.+++.++++       .
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS-----AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGK   79 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999999999987     444444433334468889999999988877765       5


Q ss_pred             cCEEEEcCCCcc------------------------hHHHHHHHH----HHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           77 VDVVISTVGHTL------------------------LADQVKIIA----AIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        77 ~d~vv~~a~~~~------------------------~~~~~~l~~----~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                      +|++|||||...                        ..+...+++    .+.+.  .+++|++||...+...     ...
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~g~iv~~sS~~~~~~~-----~~~  152 (262)
T TIGR03325        80 IDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVAS--RGSVIFTISNAGFYPN-----GGG  152 (262)
T ss_pred             CCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhc--CCCEEEEeccceecCC-----CCC
Confidence            799999998531                        111223333    33333  2578898886655321     224


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       153 ~~Y~~sKaa~~~l~  166 (262)
T TIGR03325       153 PLYTAAKHAVVGLV  166 (262)
T ss_pred             chhHHHHHHHHHHH
Confidence            57888888877663

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.65  E-value=5.3e-15  Score=108.31  Aligned_cols=129  Identities=16%  Similarity=0.125  Sum_probs=93.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      +++++||||+|++|++++++|+++|++|+++.|+..   ....+.....  ...++.++.+|+.|++++.++++      
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN---DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEE   78 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH---HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            568999999999999999999999999999998842   1111111111  23458899999999999888765      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       .+|++||++|...                   ..+    ++.+++.+.+.+ .++||++||..++...+     ....|
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss~~~~~~~~-----~~~~Y  152 (245)
T PRK12824         79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG-YGRIINISSVNGLKGQF-----GQTNY  152 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEECChhhccCCC-----CChHH
Confidence             4899999998753                   111    334466666665 68999999987764322     24568


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+.+.+
T Consensus       153 ~~sK~a~~~~  162 (245)
T PRK12824        153 SAAKAGMIGF  162 (245)
T ss_pred             HHHHHHHHHH
Confidence            8888765544

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.65  E-value=6.5e-15  Score=108.65  Aligned_cols=132  Identities=14%  Similarity=0.079  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||+++++.|+++|++|++++|.......+..+.++. ...++.++.+|++|++++.+++.       .
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA-LGVEVIFFPADVADLSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999988732210111111211 13468899999999998877764       5


Q ss_pred             cCEEEEcCCCcc---------------------hHHHHHHHHHH----HHhcC-----CccEEEeccccccccCCCccCC
Q 040431           77 VDVVISTVGHTL---------------------LADQVKIIAAI----KEAEG-----ASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        77 ~d~vv~~a~~~~---------------------~~~~~~l~~~~----~~~~~-----~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                      +|+|||++|...                     ..++..+++++    .+...     .++|+++||..++...     .
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----~  155 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS-----P  155 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC-----C
Confidence            899999998632                     22233444443    32221     3579999997765432     2


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+.+.+
T Consensus       156 ~~~~Y~~sK~a~~~~  170 (256)
T PRK12745        156 NRGEYCISKAGLSMA  170 (256)
T ss_pred             CCcccHHHHHHHHHH
Confidence            345788888877665

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.65  E-value=1e-14  Score=106.42  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcC-CCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKN-LGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~-~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|++|++++++|++.|++|++++|+     +++...+ .+... ..+.++.+|+.|++++.++++      
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARD-----QKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC-----HHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3689999999999999999999999999999987     4333322 22211 468889999999998887775      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHHHHHHHHHHH---hcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 -QVDVVISTVGHTL-------------------LADQVKIIAAIKE---AEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~---~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                       ++|+|||+++...                   ..+...+++++.+   .+ .+++|++||.......     .....|.
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~-----~~~~~y~  154 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRG-GGYIINISSLAGTNFF-----AGGAAYN  154 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHC-CeEEEEECChhhccCC-----CCCchHH
Confidence             6899999998753                   1112234444332   33 4789999997654321     2345677


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       155 ~sk~a~~~~  163 (237)
T PRK07326        155 ASKFGLVGF  163 (237)
T ss_pred             HHHHHHHHH
Confidence            887766555

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.65  E-value=7.3e-15  Score=108.59  Aligned_cols=126  Identities=17%  Similarity=0.176  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++.....+.++.+|+.|++++.+++.       
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDID-----AAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERG   76 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999987     4443322 22333468889999999999887775       


Q ss_pred             CcCEEEEcCCCcc-------------------hHHHHH----HHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-------------------LADQVK----IIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|+|||++|...                   ..+...    +++.+.+.+ .++|+++||.......      ....|.
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~------~~~~y~  149 (257)
T PRK07074         77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRS-RGAVVNIGSVNGMAAL------GHPAYS  149 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhcCCC------CCcccH
Confidence            4899999998753                   122223    334445555 5789999996544211      123677


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       150 ~sK~a~~~~  158 (257)
T PRK07074        150 AAKAGLIHY  158 (257)
T ss_pred             HHHHHHHHH
Confidence            777766555

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.65  E-value=7.6e-15  Score=109.63  Aligned_cols=123  Identities=16%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      |++++||||+|++|+++++.|++.|++|++++|+     .++.+.+.   ..++.++.+|++|++++.++++       +
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   72 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARK-----AEDVEALA---AAGFTAVQLDVNDGAALARLAEELEAEHGG   72 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHH---HCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999999999999988     44433332   2357889999999999887764       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+||...                   ..++..++++    +.+ + .++++++||..+....     .....|..
T Consensus        73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~-~g~iv~isS~~~~~~~-----~~~~~Y~~  145 (274)
T PRK05693         73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRR-S-RGLVVNIGSVSGVLVT-----PFAGAYCA  145 (274)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh-c-CCEEEEECCccccCCC-----CCccHHHH
Confidence            899999999643                   1123333343    333 3 4689999997665432     23457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       146 sK~al~~~  153 (274)
T PRK05693        146 SKAAVHAL  153 (274)
T ss_pred             HHHHHHHH
Confidence            88876665

>PLN02778 3,5-epimerase/4-reductase

Probab=99.65  E-value=4.2e-15  Score=112.67  Aligned_cols=113  Identities=18%  Similarity=0.118  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      .|+|+||||+||||++|+++|+++|++|+...+                          |+.|.+.+...+.  ++|+||
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~--------------------------~~~~~~~v~~~l~~~~~D~Vi   62 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSG--------------------------RLENRASLEADIDAVKPTHVF   62 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecC--------------------------ccCCHHHHHHHHHhcCCCEEE
Confidence            579999999999999999999999999864321                          2334455555554  689999


Q ss_pred             EcCCCcc------------------hHHHHHHHHHHHHhcCCccEEEeccccccccC-----------CCcc-C-Cccch
Q 040431           82 STVGHTL------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL-----------SSEM-T-TTLDM  130 (157)
Q Consensus        82 ~~a~~~~------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~-----------~~~~-~-~~~~~  130 (157)
                      |+|+...                  ..++.+++++|.+.+ ++ ++++||..+|+..           ..+. + .+.+.
T Consensus        63 H~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g-v~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~  140 (298)
T PLN02778         63 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG-LV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSF  140 (298)
T ss_pred             ECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCc
Confidence            9998752                  445889999999998 65 5566665555321           1111 2 23478


Q ss_pred             hhHhHhhhhHHHHH
Q 040431          131 LEMTELIDQKIFIY  144 (157)
Q Consensus       131 ~~~~~~~~~~~~~~  144 (157)
                      |+.+|.+.|.+...
T Consensus       141 Yg~sK~~~E~~~~~  154 (298)
T PLN02778        141 YSKTKAMVEELLKN  154 (298)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999998443

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.65  E-value=7.7e-15  Score=107.72  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhc---
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      |+ .++++||||+|+||++++++|++.|++|+++.+...   ....+.+++..  ...+..+.+|+.|.+++.++++   
T Consensus         1 ~~-~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   76 (246)
T PRK12938          1 MS-QRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS---PRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVK   76 (246)
T ss_pred             CC-CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh---HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            44 678999999999999999999999999887654321   11222222221  3457778999999998887765   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+|||+||...                       ...++.+++.+.+.+ .++++++||.......     ...
T Consensus        77 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~  150 (246)
T PRK12938         77 AEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQKGQ-----FGQ  150 (246)
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEEechhccCCC-----CCC
Confidence                5899999999753                       112455666666666 6899999996543321     234


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       151 ~~y~~sK~a~~~~  163 (246)
T PRK12938        151 TNYSTAKAGIHGF  163 (246)
T ss_pred             hhHHHHHHHHHHH
Confidence            5778888766555

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.65  E-value=4.4e-15  Score=109.50  Aligned_cols=130  Identities=13%  Similarity=0.141  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+.... +...+.+.. .+.++.++.+|++|.+++.++++       .
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGG-EETVALIRE-AGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            37999999999999999999999999999999984321 111112222 23468899999999998888765       4


Q ss_pred             cCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           77 VDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      +|+|||++|...                    ...    .+.+++.+.+.+ .++++++||..++...+     ....|.
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~sS~~~~~~~~-----~~~~Y~  158 (253)
T PRK06172         85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG-GGAIVNTASVAGLGAAP-----KMSIYA  158 (253)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhccCCC-----CCchhH
Confidence            699999999742                    111    233444555555 57899999987765432     345788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       159 ~sKaa~~~~  167 (253)
T PRK06172        159 ASKHAVIGL  167 (253)
T ss_pred             HHHHHHHHH
Confidence            888876665

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.65  E-value=9.8e-15  Score=106.97  Aligned_cols=127  Identities=13%  Similarity=0.102  Sum_probs=92.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|++|+++++.|+++|++|++++|+     +++.+.+.+.  .+..++.+|++|++++.++++   ++|+|
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~-----~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARN-----AAALDRLAGE--TGCEPLRLDVGDDAAIRAALAAAGAFDGL   81 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHH--hCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            3689999999999999999999999999999998     4444333322  135678999999998888876   48999


Q ss_pred             EEcCCCcc-------------------hHHHHHHHHHHHH----hcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-------------------LADQVKIIAAIKE----AEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-------------------~~~~~~l~~~~~~----~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      ||++|...                   +.+...+++++.+    .+..++|+++||...+...+     ....|..+|.+
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-----~~~~y~~sK~a  156 (245)
T PRK07060         82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLP-----DHLAYCASKAA  156 (245)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCC-----CCcHhHHHHHH
Confidence            99999753                   2223444444433    32136899999987665332     34578888887


Q ss_pred             hhHHH
Q 040431          138 DQKIF  142 (157)
Q Consensus       138 ~~~~~  142 (157)
                      .+.+.
T Consensus       157 ~~~~~  161 (245)
T PRK07060        157 LDAIT  161 (245)
T ss_pred             HHHHH
Confidence            76663

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.65  E-value=9.1e-15  Score=107.89  Aligned_cols=124  Identities=15%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+...          .....++.++.+|+.|++++.+++.       +
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE----------TVDGRPAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh----------hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999987321          1123468889999999999888775       4


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+||...                   ..++..+++++    .+.+..++||++||...+...+     ....|..
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-----~~~~Y~~  150 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSP-----GTAAYGA  150 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCC-----CCchhHH
Confidence            699999998643                   22233444443    3332146899999987654322     3457888


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       151 sK~a~~~l~  159 (252)
T PRK07856        151 AKAGLLNLT  159 (252)
T ss_pred             HHHHHHHHH
Confidence            888776664

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.65  E-value=9.2e-15  Score=107.07  Aligned_cols=127  Identities=13%  Similarity=0.132  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEE-ecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVL-VRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~-~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +++++||||+|++|++++++|++.|++|+++ .|+.     ++.+.+ ...  ....+.++.+|++|++++.+++.    
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE-----EAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE   79 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988 7773     332221 111  23458899999999999887765    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+|||++|...                   ..+    .+.+.+.+.+.+ .++++++||...+...+     ...
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~~~~-----~~~  153 (247)
T PRK05565         80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRK-SGVIVNISSIWGLIGAS-----CEV  153 (247)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCHhhccCCC-----Ccc
Confidence               6899999999753                   112    333334444454 57899999976654322     234


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       154 ~y~~sK~a~~~~  165 (247)
T PRK05565        154 LYSASKGAVNAF  165 (247)
T ss_pred             HHHHHHHHHHHH
Confidence            677777655444

>PRK05865 hypothetical protein; Provisional

Probab=99.64  E-value=2.1e-15  Score=126.80  Aligned_cols=98  Identities=16%  Similarity=0.242  Sum_probs=85.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+|||||||+|++++++|+++|++|++++|+....           ...++.++.+|+.|.+++.++++++|+|||+|
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~-----------~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlA   69 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS-----------WPSSADFIAADIRDATAVESAMTGADVVAHCA   69 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh-----------cccCceEEEeeCCCHHHHHHHHhCCCEEEECC
Confidence            4899999999999999999999999999999873211           12357889999999999999999999999999


Q ss_pred             CCcc------hHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           85 GHTL------LADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        85 ~~~~------~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +...      +.++.++++++.+.+ +++||++||.
T Consensus        70 a~~~~~~~vNv~GT~nLLeAa~~~g-vkr~V~iSS~  104 (854)
T PRK05865         70 WVRGRNDHINIDGTANVLKAMAETG-TGRIVFTSSG  104 (854)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHcC-CCeEEEECCc
Confidence            8753      567889999999988 8899999996

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.64  E-value=1.4e-14  Score=107.00  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARH-----LDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE   83 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999987     33333222 11  12467889999999999888765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   ..+    ++.+++.+.+.+..++++++||..+....   .+.....
T Consensus        84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---~~~~~~~  160 (253)
T PRK05867         84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN---VPQQVSH  160 (253)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---CCCCccc
Confidence              6899999999753                   112    33444445444313579999987553211   0112357


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       161 Y~asKaal~~~~  172 (253)
T PRK05867        161 YCASKAAVIHLT  172 (253)
T ss_pred             hHHHHHHHHHHH
Confidence            888888776663

>PRK07985 oxidoreductase; Provisional

Probab=99.64  E-value=1.4e-14  Score=109.57  Aligned_cols=133  Identities=11%  Similarity=0.045  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++..|+......+.+..+.+....++.++.+|++|++++.+++.       +
T Consensus        49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  128 (294)
T PRK07985         49 DRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALGG  128 (294)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            368999999999999999999999999998776532211111111111123457789999999998887765       5


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|++||+||...                    ..++..+++++... ...++||++||..++...+     ....|..+|
T Consensus       129 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~-----~~~~Y~asK  203 (294)
T PRK07985        129 LDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSP-----HLLDYAATK  203 (294)
T ss_pred             CCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCC-----CcchhHHHH
Confidence            799999998631                    22344555554432 1135899999988775432     234788888


Q ss_pred             hhhhHH
Q 040431          136 LIDQKI  141 (157)
Q Consensus       136 ~~~~~~  141 (157)
                      .+.+.+
T Consensus       204 aal~~l  209 (294)
T PRK07985        204 AAILNY  209 (294)
T ss_pred             HHHHHH
Confidence            877665

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.64  E-value=1e-14  Score=107.94  Aligned_cols=132  Identities=13%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... ....+.+.... ...+.++.+|++|++++.+++.       
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKA-ANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999873221 11111111111 2458899999999988887764       


Q ss_pred             CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++||+||...                   ..+    .+.+++.+.+.+..++++++||..+....     .....|.
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~-----~~~~~Y~  155 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS-----KHNSGYS  155 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC-----CCCchhH
Confidence            5799999998643                   112    33455555554412589999986532211     2345788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       156 ~sKaa~~~l  164 (259)
T PRK12384        156 AAKFGGVGL  164 (259)
T ss_pred             HHHHHHHHH
Confidence            888876555

>PRK09242 tropinone reductase; Provisional

Probab=99.64  E-value=7.6e-15  Score=108.56  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=92.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh----cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF----KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~----~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||+++++.|.+.|++|++++|+.     +..+.+ ++.    .+.++.++.+|+++++++.+++.   
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGADVLIVARDA-----DALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE   83 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999973     333222 111    13468889999999988877664   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+|||++|...                   ..+.    +.+++.+.+.+ .++++++||...+...+     ..
T Consensus        84 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~~~~~~~~-----~~  157 (257)
T PRK09242         84 DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA-SSAIVNIGSVSGLTHVR-----SG  157 (257)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CceEEEECccccCCCCC-----CC
Confidence                5899999999732                   1223    33344445555 57999999987665432     23


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       158 ~~Y~~sK~a~~~~~  171 (257)
T PRK09242        158 APYGMTKAALLQMT  171 (257)
T ss_pred             cchHHHHHHHHHHH
Confidence            46788887766653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.64  E-value=1.6e-14  Score=107.39  Aligned_cols=127  Identities=11%  Similarity=0.048  Sum_probs=92.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|++|++++++|+++|++|+++.|+     +++.+.+ ...  ...++.++.+|++|++++.+++.     
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDIN-----QELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999887     3333222 122  13468889999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|++||+||...                       ....+.+++.+.+.+ .++|+++||.......     .....
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~  158 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG-HGKIINICSMMSELGR-----ETVSA  158 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCccccCCC-----CCCcc
Confidence              4899999999854                       111334555566655 6899999996543211     23567


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       159 Y~~sKaal~~l  169 (265)
T PRK07097        159 YAAAKGGLKML  169 (265)
T ss_pred             HHHHHHHHHHH
Confidence            88888876655

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.64  E-value=1.6e-14  Score=107.03  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+...  .+..+.+.. ...++.++.+|+++++++.+++.       .
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~--~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   82 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGANLILLDISPEI--EKLADELCG-RGHRCTAVVADVRDPASVAAAIKRAKEKEGR   82 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH--HHHHHHHHH-hCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999999887321  111111211 13457889999999999888765       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+||...                   +.+...++++    +.+.+ .++++++||.......    ......|..
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~----~~~~~~Y~~  157 (263)
T PRK08226         83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK-DGRIVMMSSVTGDMVA----DPGETAYAL  157 (263)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhcccC----CCCcchHHH
Confidence            799999999743                   2223333443    33444 5789999986542111    122456888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       158 sK~a~~~~  165 (263)
T PRK08226        158 TKAAIVGL  165 (263)
T ss_pred             HHHHHHHH
Confidence            88876665

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.64  E-value=1.8e-14  Score=105.73  Aligned_cols=128  Identities=13%  Similarity=0.100  Sum_probs=91.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|++|++++++|++.|++|++++|+     .+..+.+.+....++.++.+|++|.+++..+++       +
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGARVAITGRD-----PASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGR   80 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC-----HHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4699999999999999999999999999999887     433333322224467889999999887766543       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|+|||+||...                   ..++..+++++...  . ..+++++||.......     .....|..+|
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~i~~~S~~~~~~~-----~~~~~Y~~sK  154 (249)
T PRK06500         81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN-PASIVLNGSINAHIGM-----PNSSVYAASK  154 (249)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCEEEEEechHhccCC-----CCccHHHHHH
Confidence            899999998743                   23355666666532  2 3567787775443221     2356889998


Q ss_pred             hhhhHHH
Q 040431          136 LIDQKIF  142 (157)
Q Consensus       136 ~~~~~~~  142 (157)
                      .+.+.+.
T Consensus       155 ~a~~~~~  161 (249)
T PRK06500        155 AALLSLA  161 (249)
T ss_pred             HHHHHHH
Confidence            8877664

>PRK12320 hypothetical protein; Provisional

Probab=99.64  E-value=2.8e-15  Score=123.77  Aligned_cols=96  Identities=21%  Similarity=0.224  Sum_probs=81.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+||||+||||++|+++|++.|++|++++|.+...           ...+++++.+|+.|+. +.+++.++|+|||+|
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLA   68 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQELAGEADAVIHLA   68 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHHhcCCCEEEEcC
Confidence            4899999999999999999999999999999863211           1246889999999985 788888999999999


Q ss_pred             CCcc-------hHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           85 GHTL-------LADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        85 ~~~~-------~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +...       +.++.+++++|.+.+ . ++||+||.
T Consensus        69 a~~~~~~~~vNv~Gt~nLleAA~~~G-v-RiV~~SS~  103 (699)
T PRK12320         69 PVDTSAPGGVGITGLAHVANAAARAG-A-RLLFVSQA  103 (699)
T ss_pred             ccCccchhhHHHHHHHHHHHHHHHcC-C-eEEEEECC
Confidence            8652       566889999999988 5 79999986

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.64  E-value=1.7e-14  Score=104.88  Aligned_cols=130  Identities=13%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      |++++||||+|++|+++++.|++.|++|++++|+...     .+.+.+.  .++.+..+|++|++++.++++     ++|
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~-----~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~id   73 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQ-----DTALQAL--PGVHIEKLDMNDPASLDQLLQRLQGQRFD   73 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcc-----hHHHHhc--cccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence            4689999999999999999999999999999998432     2222222  357788999999998888776     589


Q ss_pred             EEEEcCCCcc---------------------hHHHHHHHHHHHHh---cCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           79 VVISTVGHTL---------------------LADQVKIIAAIKEA---EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~---------------------~~~~~~l~~~~~~~---~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      +|||++|...                     ..+...+.+++...   + ...++++||..+...  .........|..+
T Consensus        74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~iv~~ss~~g~~~--~~~~~~~~~Y~~s  150 (225)
T PRK08177         74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPG-QGVLAFMSSQLGSVE--LPDGGEMPLYKAS  150 (225)
T ss_pred             EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhc-CCEEEEEccCccccc--cCCCCCccchHHH
Confidence            9999998752                     11233344443221   2 357888888543321  1112345579999


Q ss_pred             HhhhhHHHH
Q 040431          135 ELIDQKIFI  143 (157)
Q Consensus       135 ~~~~~~~~~  143 (157)
                      |.+.+.+..
T Consensus       151 K~a~~~~~~  159 (225)
T PRK08177        151 KAALNSMTR  159 (225)
T ss_pred             HHHHHHHHH
Confidence            998877743

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.2e-14  Score=106.41  Aligned_cols=135  Identities=12%  Similarity=0.083  Sum_probs=93.3

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+|+||+++++.|+++|++|+++.|+......+..+.+.. ...++.++.+|++|++++.++++       
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA-AGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3579999999999999999999999999988877632110111111211 23568899999999999988876       


Q ss_pred             CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           76 QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      ++|++||+||...                   ..++..+++++.+.. ..++++++||.......     .....|..+|
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~-----~~~~~Y~~sK  157 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPL-----PGYGPYAASK  157 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCC-----CCCchhHHHH
Confidence            5899999999743                   222444555554431 13589999987665432     2345788888


Q ss_pred             hhhhHHHH
Q 040431          136 LIDQKIFI  143 (157)
Q Consensus       136 ~~~~~~~~  143 (157)
                      .+.+.+..
T Consensus       158 ~a~~~~~~  165 (245)
T PRK12937        158 AAVEGLVH  165 (245)
T ss_pred             HHHHHHHH
Confidence            88776643

>PRK12743 oxidoreductase; Provisional

Probab=99.63  E-value=1.6e-14  Score=106.88  Aligned_cols=129  Identities=9%  Similarity=0.041  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||++++++|+++|++|+++.++.    .+..+.+ ++.  ...++.++.+|++|++++.+++.     
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSD----EEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR   77 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCC----hHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            67999999999999999999999999998887653    2222211 111  23468899999999998877664     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|+|||++|...                   ..+...++++    +.+.+..++||++||......     ..+...
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~-----~~~~~~  152 (256)
T PRK12743         78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTP-----LPGASA  152 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCC-----CCCcch
Confidence              5899999999743                   1223334443    333321368999999754322     234568


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       153 Y~~sK~a~~~l  163 (256)
T PRK12743        153 YTAAKHALGGL  163 (256)
T ss_pred             hHHHHHHHHHH
Confidence            88888876655

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.63  E-value=2.4e-14  Score=105.76  Aligned_cols=127  Identities=13%  Similarity=0.070  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+.     +..+.+ .+.  ...++.++.+|++|++++.++++     
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA-----ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH-----HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999983     332221 111  23458899999999998887765     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|++||++|...                       ....+.+++.+.+.+ .++||++||..+....+     ....
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~~-----~~~~  159 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG-YGRIIAITSIAGQVARA-----GDAV  159 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEeechhccCCC-----CccH
Confidence              4699999999743                       112344445555565 68999999976654322     2356


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       160 Y~~sK~a~~~~  170 (256)
T PRK06124        160 YPAAKQGLTGL  170 (256)
T ss_pred             hHHHHHHHHHH
Confidence            77777766555

>PRK07069 short chain dehydrogenase; Validated

Probab=99.63  E-value=8.8e-15  Score=107.58  Aligned_cols=126  Identities=7%  Similarity=0.118  Sum_probs=92.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhc----CCCeEEEEccCCChHHHHHHhc-----
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFK----NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~----~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++||||+|+||.++++.|+++|++|++++|+..    +.++.+. +..    ...+.++.+|++|++++.++++     
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDA----AGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADA   76 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcc----hHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999998732    1222221 111    1234567899999999887764     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||+||...                       ...++.+++++.+.+ .++|+++||..++...+     ....
T Consensus        77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~~~~~~~~-----~~~~  150 (251)
T PRK07069         77 MGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSVAAFKAEP-----DYTA  150 (251)
T ss_pred             cCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecChhhccCCC-----CCch
Confidence              5799999999753                       124667788887776 68999999987765432     2346


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       151 Y~~sK~a~~~~  161 (251)
T PRK07069        151 YNASKAAVASL  161 (251)
T ss_pred             hHHHHHHHHHH
Confidence            88888776555

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.63  E-value=2.1e-14  Score=105.98  Aligned_cols=129  Identities=12%  Similarity=0.110  Sum_probs=91.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     +++...+ .+..  ...+..+.+|++|++++.+++.     
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDIT-----AERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD   83 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999987     3333221 2221  2357788999999999888765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|+|||++|...                   ..+    .+.+.+.+.+.+ .++|+++||.......     .....
T Consensus        84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~~  157 (254)
T PRK08085         84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ-AGKIINICSMQSELGR-----DTITP  157 (254)
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccchhccCC-----CCCcc
Confidence              4899999999743                   111    333444444444 5789999997553221     23457


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       158 Y~~sK~a~~~~~~  170 (254)
T PRK08085        158 YAASKGAVKMLTR  170 (254)
T ss_pred             hHHHHHHHHHHHH
Confidence            8888887766633

>PRK08017 oxidoreductase; Provisional

Probab=99.63  E-value=1.4e-14  Score=106.91  Aligned_cols=124  Identities=14%  Similarity=0.169  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--------   75 (157)
                      +++++||||+|+||+++++.|+++|++|++++|+     .++.+.+.   ..++..+.+|+.|.+++.+++.        
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~-----~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~   73 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRK-----PDDVARMN---SLGFTGILLDLDDPESVERAADEVIALTDN   73 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHhHHHH---hCCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence            5689999999999999999999999999999988     44443332   2357889999999988776553        


Q ss_pred             CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      .+|.+||++|...                   +    ...+.+++++.+.+ .++++++||..+....     .....|.
T Consensus        74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~-----~~~~~Y~  147 (256)
T PRK08017         74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG-EGRIVMTSSVMGLIST-----PGRGAYA  147 (256)
T ss_pred             CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCEEEEEcCcccccCC-----CCccHHH
Confidence            4689999998643                   1    11334567777776 6899999997554322     2356788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       148 ~sK~~~~~~  156 (256)
T PRK08017        148 ASKYALEAW  156 (256)
T ss_pred             HHHHHHHHH
Confidence            888877765

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.9e-14  Score=108.62  Aligned_cols=132  Identities=14%  Similarity=0.113  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.+++++|+++|++|++++|+.........+.++ ....++.++.+|++|.+++.++++       .
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~  124 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVE-KEGVKCLLIPGDVSDEAFCKDAVEETVRELGR  124 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999998874321011111121 123467889999999998887765       5


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|+|||+||...                    ..+...+++++... ...++||++||..++...+.     ...|..+|
T Consensus       125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~-----~~~Y~~sK  199 (290)
T PRK06701        125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNET-----LIDYSATK  199 (290)
T ss_pred             CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCC-----cchhHHHH
Confidence            799999999742                    22344555554432 11358999999887754332     24678888


Q ss_pred             hhhhHH
Q 040431          136 LIDQKI  141 (157)
Q Consensus       136 ~~~~~~  141 (157)
                      .+.+.+
T Consensus       200 ~a~~~l  205 (290)
T PRK06701        200 GAIHAF  205 (290)
T ss_pred             HHHHHH
Confidence            876655

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.6e-14  Score=106.02  Aligned_cols=126  Identities=17%  Similarity=0.129  Sum_probs=92.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC----cCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ----VDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~----~d~   79 (157)
                      |++++||||+|++|++++++|+++|++|++++|+     +++.+.+... ..++.++.+|++|++++.++++.    +|.
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~-----~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~   74 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRN-----QSVLDELHTQ-SANIFTLAFDVTDHPGTKAALSQLPFIPEL   74 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHh-cCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence            3589999999999999999999999999999997     5555444332 24688899999999999998874    689


Q ss_pred             EEEcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCccCCccchhhHhHhhh
Q 040431           80 VISTVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~  138 (157)
                      +||+||...                   ..++.++++++...  + ..+++++||.......     .....|..+|.+.
T Consensus        75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~~Y~asK~a~  148 (240)
T PRK06101         75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC-GHRVVIVGSIASELAL-----PRAEAYGASKAAV  148 (240)
T ss_pred             EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCeEEEEechhhccCC-----CCCchhhHHHHHH
Confidence            999998532                   23355566655542  2 3579999886544322     2345788888877


Q ss_pred             hHH
Q 040431          139 QKI  141 (157)
Q Consensus       139 ~~~  141 (157)
                      +.+
T Consensus       149 ~~~  151 (240)
T PRK06101        149 AYF  151 (240)
T ss_pred             HHH
Confidence            666

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.9e-14  Score=106.43  Aligned_cols=129  Identities=11%  Similarity=0.087  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+...     .+..++.  ...++.++.+|+++++++.++++      
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPD-----DEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF   81 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhh-----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999999999999999988432     2222222  23468899999999999888775      


Q ss_pred             -CcCEEEEcCCCcc------------------hHHHHHHHHHHHH---hcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           76 -QVDVVISTVGHTL------------------LADQVKIIAAIKE---AEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------------~~~~~~l~~~~~~---~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                       ++|+|||++|...                  ..+...+.+++..   .+ .++|+++||..+....     .....|..
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~-----~~~~~Y~~  155 (258)
T PRK08628         82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKAS-RGAIVNISSKTALTGQ-----GGTSGYAA  155 (258)
T ss_pred             CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhcc-CcEEEEECCHHhccCC-----CCCchhHH
Confidence             5899999999642                  1122233333321   22 4689999997665432     23557888


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       156 sK~a~~~~~~  165 (258)
T PRK08628        156 AKGAQLALTR  165 (258)
T ss_pred             HHHHHHHHHH
Confidence            8887776643

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1e-14  Score=107.35  Aligned_cols=129  Identities=9%  Similarity=0.054  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQV------   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~------   77 (157)
                      |++++||||+|+||++++++|+++|++|++++|+..    +..+.+.+....++.++.+|++|+++++++++.+      
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTEN----KELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQE   76 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCch----HHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence            358999999999999999999999999999998731    2222222222456888999999999998887521      


Q ss_pred             -----CEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           78 -----DVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        78 -----d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                           +.+||++|...                        ....+.+++.+.+.+..++|+++||..+....     ...
T Consensus        77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----~~~  151 (251)
T PRK06924         77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPY-----FGW  151 (251)
T ss_pred             ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCC-----CCc
Confidence                 17899988642                        11244555666554324689999997654322     335


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       152 ~~Y~~sKaa~~~~  164 (251)
T PRK06924        152 SAYCSSKAGLDMF  164 (251)
T ss_pred             HHHhHHHHHHHHH
Confidence            6898888887666

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.63  E-value=2.8e-14  Score=105.90  Aligned_cols=127  Identities=15%  Similarity=0.186  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh-cCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF-KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~-~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|++|.+++++|+++|++|++++|+     +++.+.+. +. ...++.++.+|+.|++++.++++      
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRN-----AEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999998     43333222 21 23468899999999998887764      


Q ss_pred             CcCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      .+|+|||+||...                   ..++..++++    +.+.+ .++++++||..+....+     ....|.
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~~-----~~~~Y~  153 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQP-SAMVVNVGSTFGSIGYP-----GYASYC  153 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEecChhhCcCCC-----CccHHH
Confidence            5799999999743                   1223333333    44444 57899998865543222     245688


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+...+
T Consensus       154 ~sK~a~~~~  162 (263)
T PRK09072        154 ASKFALRGF  162 (263)
T ss_pred             HHHHHHHHH
Confidence            888866554

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.8e-15  Score=111.17  Aligned_cols=144  Identities=15%  Similarity=0.228  Sum_probs=113.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      .+.++||||.||||++.+..+....  ++.+.++.-....+   ++.+++.. .++..++++|+.+...+..++.  .+|
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~---~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id   82 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN---LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEID   82 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc---cchhhhhccCCCceEeeccccchHHHHhhhccCchh
Confidence            3689999999999999999999875  45666554433221   44444443 4689999999999999988886  689


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-------cCCccchhhHhHh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-------MTTTLDMLEMTEL  136 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~~~~~~~~  136 (157)
                      .|+|+|+...               +-.+..|++++...|.+++|||+||..+|++....       .+.|.++|..+|.
T Consensus        83 ~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKa  162 (331)
T KOG0747|consen   83 TVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKA  162 (331)
T ss_pred             hhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHH
Confidence            9999999876               45588999999999768999999999999875432       2689999999999


Q ss_pred             hhhHHHHHHHhcccc
Q 040431          137 IDQKIFIYFWGRTLN  151 (157)
Q Consensus       137 ~~~~~~~~~~~~~~~  151 (157)
                      +.|.+. ..|+.+++
T Consensus       163 AaE~~v-~Sy~~sy~  176 (331)
T KOG0747|consen  163 AAEMLV-RSYGRSYG  176 (331)
T ss_pred             HHHHHH-HHHhhccC
Confidence            999984 44444443

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.63  E-value=1.6e-14  Score=106.16  Aligned_cols=128  Identities=19%  Similarity=0.166  Sum_probs=89.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-Hhhhh--cCCCeEEEEccCCChHHHHHHhcC----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHF--KNLGVNLVIGDVLNHESLVKAIKQ----   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~----   76 (157)
                      .++++||||+|+||++++++|+++|++|+++.+..    ++..+ ...+.  ...++.++.+|++|++++.++++.    
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSS----KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCc----HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999998765442    22222 11222  124688899999999999888763    


Q ss_pred             ---cCEEEEcCCCcc-------------------hHHHHHHHHHHH----HhcCCccEEEeccccccccCCCccCCccch
Q 040431           77 ---VDVVISTVGHTL-------------------LADQVKIIAAIK----EAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        77 ---~d~vv~~a~~~~-------------------~~~~~~l~~~~~----~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                         +|+|||+||...                   ..++..+++++.    +.+ .++++++||..+....     .+...
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~  155 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAE-EGRIISISSIIGQAGG-----FGQTN  155 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchhhcCCC-----CCCcc
Confidence               799999999844                   122334444433    344 5689999997654322     23457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       156 Y~~sK~a~~~~  166 (247)
T PRK12935        156 YSAAKAGMLGF  166 (247)
T ss_pred             hHHHHHHHHHH
Confidence            88888876655

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.63  E-value=2.5e-14  Score=105.77  Aligned_cols=126  Identities=13%  Similarity=0.041  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++|+||||+|+||.+++++|+++|++|++++|+     ..+.+.+....  ...++.+|++|++++.++++       +
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~-----~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDID-----PEAGKAAADEV--GGLFVPTDVTDEDAVNALFDTAAETYGS   79 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHc--CCcEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999987     33333222111  12578999999999888775       5


Q ss_pred             cCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           77 VDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      +|+|||+||...                         ..-.+.+++.+.+.+ .++++++||.......+    .....|
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~g~iv~~sS~~~~~g~~----~~~~~Y  154 (255)
T PRK06057         80 VDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG-KGSIINTASFVAVMGSA----TSQISY  154 (255)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC-CcEEEEEcchhhccCCC----CCCcch
Confidence            799999998642                         111334455555555 57899999864332211    123468


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+.+.+
T Consensus       155 ~~sKaal~~~  164 (255)
T PRK06057        155 TASKGGVLAM  164 (255)
T ss_pred             HHHHHHHHHH
Confidence            8888654444

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.62  E-value=2.2e-14  Score=106.22  Aligned_cols=130  Identities=8%  Similarity=0.014  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|++.|++|+++.+...    +..+. ..+.  ....+.++.+|++|.+++.++++     
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSR----DEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999988776532    22221 1111  23468889999999999888775     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHH----hcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKE----AEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~----~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|+|||+||...                   +.++..+++++..    .. .+++++++|...+...+     ....
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~~s~~~~~~~p-----~~~~  158 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADA-RGLVVNMIDQRVWNLNP-----DFLS  158 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECchhhcCCCC-----CchH
Confidence              4799999998742                   2234444444433    33 46888888765543222     2347


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       159 Y~~sK~a~~~~~~  171 (258)
T PRK09134        159 YTLSKAALWTATR  171 (258)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999987766633

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=1.7e-14  Score=107.08  Aligned_cols=129  Identities=11%  Similarity=0.120  Sum_probs=102.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      ..+++||||++++|+.++.++++.|.++++.+.+..+. .+..+.....  ..+..+.+|++|.+++.+..+       +
T Consensus        38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~-~etv~~~~~~--g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN-EETVKEIRKI--GEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch-HHHHHHHHhc--CceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            56899999999999999999999999998888886655 4444444333  268899999999999887765       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++++++.|.+.+ .+++|.++|..+....+     ....|..
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS~aG~~g~~-----gl~~Yca  188 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIASVAGLFGPA-----GLADYCA  188 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehhhhcccCCc-----cchhhhh
Confidence            999999999977                       333888999999988 89999999987765433     3457777


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      ||.+...+
T Consensus       189 SK~a~vGf  196 (300)
T KOG1201|consen  189 SKFAAVGF  196 (300)
T ss_pred             hHHHHHHH
Confidence            77755444

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.62  E-value=3.9e-14  Score=105.93  Aligned_cols=137  Identities=9%  Similarity=0.105  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc--hhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS--KSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~--~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      +++++||||+|+||++++++|+++|++|++++|+.......  .++.+ ++.  ...++.++.+|+++++++.+++.   
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~   85 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAV   85 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999875432111  11111 111  23468889999999999888765   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+|||+||...                   ..++..++++    +.+.+ .++++++||......   ......
T Consensus        86 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~~---~~~~~~  161 (273)
T PRK08278         86 ERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSE-NPHILTLSPPLNLDP---KWFAPH  161 (273)
T ss_pred             HHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcC-CCEEEEECCchhccc---cccCCc
Confidence                6899999999743                   2223334444    44444 468999988543221   111446


Q ss_pred             chhhHhHhhhhHHHHH
Q 040431          129 DMLEMTELIDQKIFIY  144 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~~  144 (157)
                      ..|..+|.+.+.+...
T Consensus       162 ~~Y~~sK~a~~~~~~~  177 (273)
T PRK08278        162 TAYTMAKYGMSLCTLG  177 (273)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            7899999988777443

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.62  E-value=3e-14  Score=105.46  Aligned_cols=128  Identities=16%  Similarity=0.150  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|++|++++++|+++|++|++++|++     +..+.+. +....++.++.+|++|++++.++++       
T Consensus        11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (264)
T PRK12829         11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE-----AALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFG   85 (264)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            57999999999999999999999999999999973     3333222 2222357889999999998887764       


Q ss_pred             CcCEEEEcCCCcc--------------------hHHHHHHHHH----HHHhcCC-ccEEEeccccccccCCCccCCccch
Q 040431           76 QVDVVISTVGHTL--------------------LADQVKIIAA----IKEAEGA-SRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 ~~d~vv~~a~~~~--------------------~~~~~~l~~~----~~~~~~~-~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                      ++|+|||++|...                    ..++..++++    +...+ . ++++++||.......+     ....
T Consensus        86 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~vv~~ss~~~~~~~~-----~~~~  159 (264)
T PRK12829         86 GLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASG-HGGVIIALSSVAGRLGYP-----GRTP  159 (264)
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCeEEEEecccccccCCC-----CCch
Confidence            6899999999861                    2223334444    34444 4 6788888865433222     2346


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       160 y~~~K~a~~~~~  171 (264)
T PRK12829        160 YAASKWAVVGLV  171 (264)
T ss_pred             hHHHHHHHHHHH
Confidence            778877665553

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.62  E-value=2.5e-14  Score=106.06  Aligned_cols=127  Identities=15%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc-CCCeEEEEccCCChHHHHHHhc-------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK-NLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~-~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      |+++||||+|+||++++++|++.|++|++++|+     +++.+.. ++.. ..++.++.+|++|++++.++++       
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRN-----EENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            489999999999999999999999999999988     3333222 2221 1357889999999999888774       


Q ss_pred             CcCEEEEcCCCcc----------h---------------HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 QVDVVISTVGHTL----------L---------------ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 ~~d~vv~~a~~~~----------~---------------~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                      ++|++|||||...          .               ..+..++..+.+....++||++||..+....     .....
T Consensus        76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~  150 (259)
T PRK08340         76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPM-----PPLVL  150 (259)
T ss_pred             CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCC-----CCchH
Confidence            5899999999632          0               1123344444432215789999998765432     23456


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+...+
T Consensus       151 y~~sKaa~~~~  161 (259)
T PRK08340        151 ADVTRAGLVQL  161 (259)
T ss_pred             HHHHHHHHHHH
Confidence            77788766555

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.62  E-value=3.1e-14  Score=104.91  Aligned_cols=130  Identities=12%  Similarity=0.083  Sum_probs=92.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|.+.|++|++++|+     .+..+.+ ++.  ....+.++.+|+.|.+++.++++     
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK-----LDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER   82 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999987     3333222 222  12357789999999998877765     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        .+|++||+||...                    ..+    .+.+++.+.+.+ .++++++||.......     ....
T Consensus        83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~  156 (252)
T PRK07035         83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG-GGSIVNVASVNGVSPG-----DFQG  156 (252)
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CcEEEEECchhhcCCC-----CCCc
Confidence              4899999998531                    112    334445555555 6799999997654322     2345


Q ss_pred             hhhHhHhhhhHHHHH
Q 040431          130 MLEMTELIDQKIFIY  144 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~  144 (157)
                      .|..+|.+.+.+...
T Consensus       157 ~Y~~sK~al~~~~~~  171 (252)
T PRK07035        157 IYSITKAAVISMTKA  171 (252)
T ss_pred             chHHHHHHHHHHHHH
Confidence            788888887766333

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.62  E-value=1.7e-14  Score=106.42  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=89.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhhh--cCCCeEEEEccCCChHHHHHHhc--
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDHF--KNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~--~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      |.+.++++||||+|+||.++++.|++.|++|++..+..    .+..+. ..+.  ....+..+.+|+++.+++..+++  
T Consensus         1 ~~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   76 (252)
T PRK12747          1 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNR----KEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSL   76 (252)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHH
Confidence            54468999999999999999999999999998875432    222221 1111  13356778999999877665432  


Q ss_pred             -----------CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCcc
Q 040431           76 -----------QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        76 -----------~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                                 ++|++|||||...                   ..++..+++++...- ..++||++||...+...+   
T Consensus        77 ~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---  153 (252)
T PRK12747         77 DNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP---  153 (252)
T ss_pred             HHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCC---
Confidence                       5899999999643                   222333444333321 135899999987764322   


Q ss_pred             CCccchhhHhHhhhhHHHH
Q 040431          125 TTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~  143 (157)
                        ....|..+|.+.+.+..
T Consensus       154 --~~~~Y~~sKaa~~~~~~  170 (252)
T PRK12747        154 --DFIAYSMTKGAINTMTF  170 (252)
T ss_pred             --CchhHHHHHHHHHHHHH
Confidence              34578889988776643

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.62  E-value=2e-14  Score=105.71  Aligned_cols=134  Identities=11%  Similarity=0.061  Sum_probs=91.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|+++|++|++..|+.........+.+... ..++.++.+|+++++++..+++       +
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN-GGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc-CCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999887765321101111112221 2356788999999998877765       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      +|+|||+||...                   +.+...+++++.+.- ..++|+++||..++...     .+...|..+|.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----~~~~~Y~~sK~  159 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPA-----YGLSIYGAMKA  159 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCC-----CCchHHHHHHH
Confidence            799999999632                   122344455544331 13589999998776532     33568888988


Q ss_pred             hhhHHHH
Q 040431          137 IDQKIFI  143 (157)
Q Consensus       137 ~~~~~~~  143 (157)
                      +.+.+..
T Consensus       160 ~~~~~~~  166 (252)
T PRK06077        160 AVINLTK  166 (252)
T ss_pred             HHHHHHH
Confidence            7766643

>PRK05855 short chain dehydrogenase; Validated

Probab=99.62  E-value=2.2e-14  Score=116.83  Aligned_cols=128  Identities=10%  Similarity=0.048  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|.+.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus       315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        315 GKLVVVTGAGSGIGRETALAFAREGAEVVASDID-----EAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999997     33333221 11  13468899999999999888875     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|++|||||...                       ...++.++..+.+.+..++||++||..++...+     ....
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-----~~~~  464 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR-----SLPA  464 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC-----CCcH
Confidence              4899999999853                       122344555555554236899999988876433     3567


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       465 Y~~sKaa~~~~  475 (582)
T PRK05855        465 YATSKAAVLML  475 (582)
T ss_pred             HHHHHHHHHHH
Confidence            99999876665

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.62  E-value=3.3e-14  Score=105.08  Aligned_cols=129  Identities=5%  Similarity=-0.002  Sum_probs=91.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|+++++...   .+..+.+... ...+.++.+|++|.+++.++++       +
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~---~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP---TETIEQVTAL-GRRFLSLTADLRKIDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch---HHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999999999999999998776521   2222223222 3457889999999999988775       5


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++||+||...                   ..+    .+.+.+.+.+.+..++++++||..++...+     ....|..
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-----~~~~Y~~  160 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGI-----RVPSYTA  160 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCC-----CCcchHH
Confidence            899999999743                   122    333444444443136899999987665322     2357888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       161 sKaa~~~~  168 (253)
T PRK08993        161 SKSGVMGV  168 (253)
T ss_pred             HHHHHHHH
Confidence            88877666

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.61  E-value=8e-15  Score=119.72  Aligned_cols=118  Identities=14%  Similarity=0.209  Sum_probs=89.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCC-chhh-Hh---------hhh--------cCCCeEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGP-SKSQ-LL---------DHF--------KNLGVNLVI   61 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~-~~~~-~~---------~~~--------~~~~v~~~~   61 (157)
                      .++|+|||||||+|++|++.|++.+.   +|+++.|....... ++++ .+         .+.        ...++.++.
T Consensus       119 ~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~  198 (605)
T PLN02503        119 GKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVV  198 (605)
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEE
Confidence            57899999999999999999998764   68999997554211 2221 11         010        124688999


Q ss_pred             ccCCCh------HHHHHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC
Q 040431           62 GDVLNH------ESLVKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS  121 (157)
Q Consensus        62 ~D~~~~------~~~~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~  121 (157)
                      +|++++      +..+.+.+++|+|||+|+...            +.++.++++++.+.+..++|+|+||..+|+...
T Consensus       199 GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~  276 (605)
T PLN02503        199 GNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQ  276 (605)
T ss_pred             eeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCCC
Confidence            999986      456666678999999999865            667899999998875367899999999998764

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.61  E-value=2.9e-14  Score=107.85  Aligned_cols=126  Identities=14%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hc-CCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FK-NLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~-~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||.++++.|.+.|++|++++|+     .++++.+.+ .. ...+..+.+|++|++++.++++      
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLE-----EAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999998     444443322 22 2345667799999999887764      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHHHHH----HHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-------------------LADQVKI----IAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~~~l----~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|+||||||...                   ..+...+    ++.+.+.  .++||++||..++...+     ....|
T Consensus        84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~--~g~iv~isS~~~~~~~~-----~~~~Y  156 (296)
T PRK05872         84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER--RGYVLQVSSLAAFAAAP-----GMAAY  156 (296)
T ss_pred             CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEEeCHhhcCCCC-----CchHH
Confidence             5899999999743                   1222333    3334343  36899999987765432     24578


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+.+.+
T Consensus       157 ~asKaal~~~  166 (296)
T PRK05872        157 CASKAGVEAF  166 (296)
T ss_pred             HHHHHHHHHH
Confidence            8888766655

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.61  E-value=2.3e-14  Score=105.38  Aligned_cols=133  Identities=11%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC--ChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL--NHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~--~~~~~~~~~~------   75 (157)
                      .++++||||+|++|.+++++|++.|++|++++|+.... ....+.+......++.++.+|++  +++++.++++      
T Consensus        12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   90 (247)
T PRK08945         12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKL-EAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQF   90 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHH-HHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999983211 01111222222345677888885  5655554433      


Q ss_pred             -CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       .+|+|||+|+...                    ..+    .+.+++.+.+.+ .++|+++||.......+     ....
T Consensus        91 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~-~~~iv~~ss~~~~~~~~-----~~~~  164 (247)
T PRK08945         91 GRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSP-AASLVFTSSSVGRQGRA-----NWGA  164 (247)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEEccHhhcCCCC-----CCcc
Confidence             6899999998742                    122    334444445565 68999999976543322     2346


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       165 Y~~sK~a~~~~~~  177 (247)
T PRK08945        165 YAVSKFATEGMMQ  177 (247)
T ss_pred             cHHHHHHHHHHHH
Confidence            8888887766633

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.61  E-value=3.6e-14  Score=104.98  Aligned_cols=125  Identities=14%  Similarity=0.112  Sum_probs=88.3

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  ++||.+++++|++.|++|++..|+     ....+.+++.....+.++++|++|+++++++++      
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN-----DRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc-----hHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            4689999999  799999999999999999998886     222223333334467889999999999887764      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -QVDVVISTVGHTL-----------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                       .+|++|||||...                       ..+    ++.+++.+.+   .++++++||.+.....     ..
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~---~g~Iv~iss~~~~~~~-----~~  153 (252)
T PRK06079         82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP---GASIVTLTYFGSERAI-----PN  153 (252)
T ss_pred             CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc---CceEEEEeccCccccC-----Cc
Confidence             4899999999641                       111    2333333332   3589999987654322     23


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+...+
T Consensus       154 ~~~Y~asKaal~~l  167 (252)
T PRK06079        154 YNVMGIAKAALESS  167 (252)
T ss_pred             chhhHHHHHHHHHH
Confidence            45688888876666

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.61  E-value=2.8e-14  Score=104.87  Aligned_cols=130  Identities=11%  Similarity=0.098  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||+++++.|++.|++|+++.+++    +++.+.+ ...  ...++.++.+|++|++++.++++     
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARD----AAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSA   77 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHh
Confidence            77999999999999999999999999998765442    2222211 111  23468899999999988877664     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHHHHHHHH----HHHHhc--CCccEEEeccccccccCCCccCCc
Q 040431           76 --QVDVVISTVGHTL--------------------LADQVKIIA----AIKEAE--GASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~~~~l~~----~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                        .+|++||+||...                    ..+...++.    .+...+  ..++||++||..+....+.    .
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~----~  153 (248)
T PRK06947         78 FGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPN----E  153 (248)
T ss_pred             cCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCC----C
Confidence              5899999999642                    111223333    222221  0246999999765432221    1


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+.+.+
T Consensus       154 ~~~Y~~sK~~~~~~  167 (248)
T PRK06947        154 YVDYAGSKGAVDTL  167 (248)
T ss_pred             CcccHhhHHHHHHH
Confidence            24688888876655

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.60  E-value=5.3e-14  Score=105.22  Aligned_cols=128  Identities=17%  Similarity=0.203  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|++|++++++|++.|++|++++|+.     +..+.+ ++.  ...++.++.+|+.|++++.++++     
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ-----EKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED   84 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999873     332222 121  13457889999999998887764     


Q ss_pred             --CcCEEEEcCCCcc--------------------------------------hHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           76 --QVDVVISTVGHTL--------------------------------------LADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                        ++|++||+||...                                      ....+.+++.+.+.+ .++||++||..
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~  163 (278)
T PRK08277         85 FGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK-GGNIINISSMN  163 (278)
T ss_pred             cCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEccch
Confidence              6899999999521                                      111234555666665 57899999988


Q ss_pred             ccccCCCccCCccchhhHhHhhhhHHH
Q 040431          116 KMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ++...+     ....|..+|.+.+.+.
T Consensus       164 ~~~~~~-----~~~~Y~~sK~a~~~l~  185 (278)
T PRK08277        164 AFTPLT-----KVPAYSAAKAAISNFT  185 (278)
T ss_pred             hcCCCC-----CCchhHHHHHHHHHHH
Confidence            775432     3456888888776663

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.60  E-value=6.6e-14  Score=103.39  Aligned_cols=129  Identities=13%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-h--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-F--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||+++++.|++.|++|+++.|+     +++++.+.. .  ...++.++.+|+++++++.++++     
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRR-----VERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE   83 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999998     444432221 1  13468889999999999888776     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHH----HHHHHHHhcC-------CccEEEeccccccccCCCc
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVK----IIAAIKEAEG-------ASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~----l~~~~~~~~~-------~~~~v~~Ss~~~~~~~~~~  123 (157)
                        ++|++||++|...                   ..+...    +++.+.+...       .++++++||..++...   
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---  160 (258)
T PRK06949         84 AGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVL---  160 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCC---
Confidence              5899999999632                   111222    3333333320       2589999997765432   


Q ss_pred             cCCccchhhHhHhhhhHHH
Q 040431          124 MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (157)
                        .....|..+|.+.+.+.
T Consensus       161 --~~~~~Y~~sK~a~~~~~  177 (258)
T PRK06949        161 --PQIGLYCMSKAAVVHMT  177 (258)
T ss_pred             --CCccHHHHHHHHHHHHH
Confidence              23457888887666653

>PRK05599 hypothetical protein; Provisional

Probab=99.60  E-value=2.6e-14  Score=105.40  Aligned_cols=126  Identities=13%  Similarity=0.106  Sum_probs=88.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |+++||||+++||.+++++|. +|++|++++|+     .++++.+    .+.....+.++.+|+.|++++++++.     
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   74 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARR-----PEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQEL   74 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCC-----HHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHh
Confidence            479999999999999999998 59999999988     3333322    22222347889999999999887764     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                       ......+++.+.+.+..++||++||..+....     .....
T Consensus        75 ~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~-----~~~~~  149 (246)
T PRK05599         75 AGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRAR-----RANYV  149 (246)
T ss_pred             cCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCC-----cCCcc
Confidence              5899999999853                       00122334555544213689999997665332     23457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       150 Y~asKaa~~~~  160 (246)
T PRK05599        150 YGSTKAGLDAF  160 (246)
T ss_pred             hhhHHHHHHHH
Confidence            88888876665

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.60  E-value=2.2e-14  Score=109.12  Aligned_cols=136  Identities=17%  Similarity=0.136  Sum_probs=98.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++|||||++||.++++.|+.+|.+|++..|+.... .+..+.+ ++..+.++.++++|+++.+++.++..       
T Consensus        35 ~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~-~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~  113 (314)
T KOG1208|consen   35 GKVALVTGATSGIGFETARELALRGAHVVLACRNEERG-EEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEG  113 (314)
T ss_pred             CcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999999999999994322 1112222 23445678999999999999988764       


Q ss_pred             CcCEEEEcCCCcc---------------------hHHHHHHHHHHHHhcCCccEEEeccccccc-----cCCCcc---CC
Q 040431           76 QVDVVISTVGHTL---------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMS-----SLSSEM---TT  126 (157)
Q Consensus        76 ~~d~vv~~a~~~~---------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~-----~~~~~~---~~  126 (157)
                      ..|++|||||...                     ..-+..+++.++... ..|||++||.....     +..++.   ..
T Consensus       114 ~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~-~~RIV~vsS~~~~~~~~~~~l~~~~~~~~~  192 (314)
T KOG1208|consen  114 PLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSA-PSRIVNVSSILGGGKIDLKDLSGEKAKLYS  192 (314)
T ss_pred             CccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCC-CCCEEEEcCccccCccchhhccchhccCcc
Confidence            5899999999987                     222777888888775 58999999976511     111111   12


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+...+
T Consensus       193 ~~~~Y~~SKla~~l~  207 (314)
T KOG1208|consen  193 SDAAYALSKLANVLL  207 (314)
T ss_pred             chhHHHHhHHHHHHH
Confidence            222478888866444

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.60  E-value=4.9e-14  Score=104.51  Aligned_cols=132  Identities=13%  Similarity=0.073  Sum_probs=90.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.+++++|++.|++|+++.|+.........+.+.. ...++.++.+|++|.+++.++++       +
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   85 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK-AGGEAIAVKGDVTVESDVVNLIQTAVKEFGT   85 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-cCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            579999999999999999999999999988877532110111111211 13457889999999999887765       5


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++||+||...                       +..++.+++.+.+.+..++++++||...+...     .....|..
T Consensus        86 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~-----~~~~~Y~~  160 (261)
T PRK08936         86 LDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPW-----PLFVHYAA  160 (261)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCC-----CCCcccHH
Confidence            899999999743                       11234455666665423689999997554322     23457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       161 sKaa~~~~  168 (261)
T PRK08936        161 SKGGVKLM  168 (261)
T ss_pred             HHHHHHHH
Confidence            88655444

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.60  E-value=5.8e-14  Score=102.60  Aligned_cols=131  Identities=14%  Similarity=0.088  Sum_probs=92.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|+++|++|++++|++..    ..+.+.   ..++.++.+|++|++++.+++.       .
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   74 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP----AIDGLR---QAGAQCIQADFSTNAGIMAFIDELKQHTDG   74 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh----HHHHHH---HcCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence            6799999999999999999999999999999987432    112222   2347889999999998887764       4


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhh
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      +|++||+||...                       ....+.+++.+.+.+ ..++++++||.......     .....|.
T Consensus        75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-----~~~~~Y~  149 (236)
T PRK06483         75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGS-----DKHIAYA  149 (236)
T ss_pred             ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCC-----CCCccHH
Confidence            899999999742                       111334445555432 13589999986544221     2345799


Q ss_pred             HhHhhhhHHHHHHHh
Q 040431          133 MTELIDQKIFIYFWG  147 (157)
Q Consensus       133 ~~~~~~~~~~~~~~~  147 (157)
                      .+|.+.+.+ ...++
T Consensus       150 asKaal~~l-~~~~a  163 (236)
T PRK06483        150 ASKAALDNM-TLSFA  163 (236)
T ss_pred             HHHHHHHHH-HHHHH
Confidence            999988777 44433

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.60  E-value=6.9e-14  Score=103.69  Aligned_cols=131  Identities=18%  Similarity=0.180  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|++|+++++.|++.|++|++++|+.... ....+.+.. ...++.++.+|++|++++.+++.       +
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~-~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRL-ASLAQELAD-HGGEALVVPTDVSDAEACERLIEAAVARFGG   78 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999999999999873221 111111222 23468889999999999888765       5


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHHHH---hcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAIKE---AEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~~~---~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||++|...                    ..++..+++.+..   .+ .++++++||..++...     .+...|..
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~Y~~  152 (263)
T PRK06181         79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-RGQIVVVSSLAGLTGV-----PTRSGYAA  152 (263)
T ss_pred             CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCEEEEEecccccCCC-----CCccHHHH
Confidence            899999998744                    1123344444432   22 4689999997776532     23467888


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       153 sK~~~~~~~  161 (263)
T PRK06181        153 SKHALHGFF  161 (263)
T ss_pred             HHHHHHHHH
Confidence            888776664

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.60  E-value=3.2e-14  Score=117.88  Aligned_cols=128  Identities=14%  Similarity=0.209  Sum_probs=95.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     ++..+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~  445 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARN-----GEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE  445 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999998     3333322 111  13468889999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 --QVDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                        ++|++|||||...                         ...++.+++.+.+.+ .++||++||.+++...+     ..
T Consensus       446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~-----~~  519 (657)
T PRK07201        446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR-FGHVVNVSSIGVQTNAP-----RF  519 (657)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEECChhhcCCCC-----Cc
Confidence              5899999999641                         111334455556666 68999999988775432     24


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       520 ~~Y~~sK~a~~~~~  533 (657)
T PRK07201        520 SAYVASKAALDAFS  533 (657)
T ss_pred             chHHHHHHHHHHHH
Confidence            57888998776663

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.60  E-value=8.4e-14  Score=103.46  Aligned_cols=121  Identities=12%  Similarity=0.106  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+....           ...++.++.+|++|++++.++++       .
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG-----------QHENYQFVPTDVSSAEEVNHTVAEIIEKFGR   77 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc-----------ccCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999874332           12357889999999999888765       4


Q ss_pred             cCEEEEcCCCcc----------------------------hHHHHH----HHHHHHHhcCCccEEEeccccccccCCCcc
Q 040431           77 VDVVISTVGHTL----------------------------LADQVK----IIAAIKEAEGASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        77 ~d~vv~~a~~~~----------------------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                      +|++||+||...                            ..+...    +.+.+.+.+ .++||++||..++...    
T Consensus        78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~----  152 (266)
T PRK06171         78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQH-DGVIVNMSSEAGLEGS----  152 (266)
T ss_pred             CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcC-CcEEEEEccccccCCC----
Confidence            799999999631                            111233    333444444 4689999997765432    


Q ss_pred             CCccchhhHhHhhhhHH
Q 040431          125 TTTLDMLEMTELIDQKI  141 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~  141 (157)
                       .....|..+|.+.+.+
T Consensus       153 -~~~~~Y~~sK~a~~~l  168 (266)
T PRK06171        153 -EGQSCYAATKAALNSF  168 (266)
T ss_pred             -CCCchhHHHHHHHHHH
Confidence             2345788888776655

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.60  E-value=6.6e-14  Score=103.03  Aligned_cols=121  Identities=10%  Similarity=0.093  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|++|++++++|++.|++|++++|+.       .   . .....+.++.+|++|++++.++++       .
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-------~---~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-------L---T-QEDYPFATFVLDVSDAAAVAQVCQRLLAETGP   76 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-------h---h-hcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999999874       0   1 113467889999999999988875       3


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHH----HHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIA----AIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~----~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||++|...                   ......+++    .+.+.+ .++|+++||.......     .....|..
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~~ss~~~~~~~-----~~~~~Y~~  150 (252)
T PRK08220         77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQR-SGAIVTVGSNAAHVPR-----IGMAAYGA  150 (252)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCchhccCC-----CCCchhHH
Confidence            799999999753                   122233333    344444 5789999997654322     23467888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       151 sK~a~~~~  158 (252)
T PRK08220        151 SKAALTSL  158 (252)
T ss_pred             HHHHHHHH
Confidence            88876665

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.60  E-value=9.2e-14  Score=102.70  Aligned_cols=129  Identities=10%  Similarity=0.047  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||+++++.|.++|++|++++|+.     +..+.+. +.  ...++.++.+|++|.+++.+++.     
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~   85 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINA-----DAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK   85 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999998873     3322221 11  13457888999999999887764     


Q ss_pred             --CcCEEEEcCCCcc------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 --QVDVVISTVGHTL------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 --~~d~vv~~a~~~~------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                        ++|++||++|...                  ..+...+++++    .+.+ .+++|++||.......     .....|
T Consensus        86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~~Y  159 (255)
T PRK06113         86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAENKN-----INMTSY  159 (255)
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CcEEEEEecccccCCC-----CCcchh
Confidence              5799999999642                  22233444444    3444 4689999997654322     234578


Q ss_pred             hHhHhhhhHHHH
Q 040431          132 EMTELIDQKIFI  143 (157)
Q Consensus       132 ~~~~~~~~~~~~  143 (157)
                      ..+|.+.+.+..
T Consensus       160 ~~sK~a~~~~~~  171 (255)
T PRK06113        160 ASSKAAASHLVR  171 (255)
T ss_pred             HHHHHHHHHHHH
Confidence            888887766643

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.59  E-value=5.8e-14  Score=102.58  Aligned_cols=127  Identities=19%  Similarity=0.172  Sum_probs=89.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-Hhhhh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      ++++||||+|++|++++++|++.|++|+++.|+.    ++..+ ...+.  ...++.++.+|+.|++++.++++      
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPN----EERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAEL   76 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999999988832    22222 22222  23468899999999998877764      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       .+|+|||++|...                   ..+    .+.++..+.+.+ .++++++||.......     .....|
T Consensus        77 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~iss~~~~~~~-----~~~~~y  150 (242)
T TIGR01829        77 GPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG-WGRIINISSVNGQKGQ-----FGQTNY  150 (242)
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcCCC-----CCcchh
Confidence             4899999998642                   111    333556666665 6899999996554322     124567


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+.+.+
T Consensus       151 ~~sk~a~~~~  160 (242)
T TIGR01829       151 SAAKAGMIGF  160 (242)
T ss_pred             HHHHHHHHHH
Confidence            7777755544

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.59  E-value=5.5e-14  Score=103.01  Aligned_cols=129  Identities=10%  Similarity=0.097  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEe-cCCCCCCCchhh-Hhhhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV-RESTISGPSKSQ-LLDHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~-r~~~~~~~~~~~-~~~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      |++++||||+|+||++++++|++.|++|+++. |+     +++.+ ...+.  ...++.++.+|+.|++++.++++    
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~   75 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQN-----LHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQ   75 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCC-----hHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999999998754 44     22222 11111  13457889999999999988776    


Q ss_pred             ---CcCEEEEcCCCcc--------------------hHHHH----HHHHHHHHhc--CCccEEEeccccccccCCCccCC
Q 040431           76 ---QVDVVISTVGHTL--------------------LADQV----KIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 ---~~d~vv~~a~~~~--------------------~~~~~----~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                         ++|+|||++|...                    ..++.    .+++.+.+..  ..++|+++||..++...+..   
T Consensus        76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~---  152 (247)
T PRK09730         76 HDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGE---  152 (247)
T ss_pred             hCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCc---
Confidence               4789999999752                    11122    2233333321  13569999998665433221   


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                       ...|..+|.+.+.+
T Consensus       153 -~~~Y~~sK~~~~~~  166 (247)
T PRK09730        153 -YVDYAASKGAIDTL  166 (247)
T ss_pred             -ccchHhHHHHHHHH
Confidence             23578888766555

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.58  E-value=8e-14  Score=103.25  Aligned_cols=127  Identities=12%  Similarity=0.084  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhhcCCCeEEEEccCCChHHHHHHhc---C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHFKNLGVNLVIGDVLNHESLVKAIK---Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~~~~~---~   76 (157)
                      .++++||||+|++|.++++.|++.|++|++++|+     +++.+.    +......++.++.+|++|++++.++++   .
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~   81 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD-----ADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGD   81 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCC
Confidence            4789999999999999999999999999999988     333332    222223467889999999999888775   5


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++||++|...                       ....+.+.+.+.+.+ .++++++||......     ......|..
T Consensus        82 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss~~~~~~-----~~~~~~y~a  155 (259)
T PRK06125         82 IDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIGAAGENP-----DADYICGSA  155 (259)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecCccccCC-----CCCchHhHH
Confidence            999999999743                       122445555666654 568999998655321     122445667


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+-..+
T Consensus       156 sk~al~~~  163 (259)
T PRK06125        156 GNAALMAF  163 (259)
T ss_pred             HHHHHHHH
Confidence            77766555

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.58  E-value=1.1e-13  Score=105.62  Aligned_cols=109  Identities=11%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +++++||||+++||.++++.|++.| ++|++++|+     .++.+.+ .+.  ....+.++.+|++|.+++.+++.    
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   77 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRD-----FLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRE   77 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999 999999987     3333322 122  12457888999999998887764    


Q ss_pred             ---CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc-CCccEEEecccccc
Q 040431           76 ---QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKM  117 (157)
Q Consensus        76 ---~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~  117 (157)
                         ++|++|||||...                        ...++.+++.+.+.+ ..++||++||..++
T Consensus        78 ~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~  147 (314)
T TIGR01289        78 SGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGN  147 (314)
T ss_pred             hCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccc
Confidence               5899999999632                        112455666666552 13699999998765

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.58  E-value=8.5e-14  Score=102.71  Aligned_cols=128  Identities=15%  Similarity=0.079  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|++|+++++.|++.|++|++++|+.     ++.+.+. +.  ...++.++.+|++|++++.+++.     
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   75 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK-----EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEK   75 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999883     3332221 11  13468899999999998887764     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|++||++|...                   ..+...+++++    .+.+..++|+++||...+...+     ....
T Consensus        76 ~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-----~~~~  150 (252)
T PRK07677         76 FGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGP-----GVIH  150 (252)
T ss_pred             hCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCC-----CCcc
Confidence              5799999998532                   22233444444    3332136899999976543221     2345


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       151 Y~~sKaa~~~~  161 (252)
T PRK07677        151 SAAAKAGVLAM  161 (252)
T ss_pred             hHHHHHHHHHH
Confidence            77777766555

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.58  E-value=3.3e-14  Score=98.52  Aligned_cols=129  Identities=14%  Similarity=0.186  Sum_probs=93.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      ++++||||++.||.+++++|+++|. .|+++.|+..   .+..+.+ .+.  ...++.++++|++++++++++++     
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~---~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSED---SEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKR   77 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCH---HHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999999999999965 6777777610   1222222 222  24678999999999999888875     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                        ..|++||++|...                   ......+.+++...+ .++||++||.......+     ....|..+
T Consensus        78 ~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~~-----~~~~Y~as  151 (167)
T PF00106_consen   78 FGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGVRGSP-----GMSAYSAS  151 (167)
T ss_dssp             HSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGTSSST-----TBHHHHHH
T ss_pred             cccccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhccCCC-----CChhHHHH
Confidence              6899999999976                   223445555555554 68999999987765432     34588888


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+...+.
T Consensus       152 kaal~~~~  159 (167)
T PF00106_consen  152 KAALRGLT  159 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777663

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.58  E-value=1.3e-13  Score=101.92  Aligned_cols=133  Identities=11%  Similarity=0.029  Sum_probs=92.1

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCC-------CCchhhHhhhh--cCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTIS-------GPSKSQLLDHF--KNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~   72 (157)
                      +++++||||+|  ++|.+++++|++.|++|++++|++.+.       ..+......+.  ...++.++.+|++|++++.+
T Consensus         5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   84 (256)
T PRK12748          5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNR   84 (256)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            46899999995  799999999999999999999873211       01111111111  13458899999999998877


Q ss_pred             Hhc-------CcCEEEEcCCCcc-------------------hHHHHHHHHHHH----HhcCCccEEEeccccccccCCC
Q 040431           73 AIK-------QVDVVISTVGHTL-------------------LADQVKIIAAIK----EAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        73 ~~~-------~~d~vv~~a~~~~-------------------~~~~~~l~~~~~----~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      +++       .+|+|||+||...                   +.++..+++++.    +.+ .++++++||...+...+ 
T Consensus        85 ~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~~~~-  162 (256)
T PRK12748         85 VFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKA-GGRIINLTSGQSLGPMP-  162 (256)
T ss_pred             HHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC-CeEEEEECCccccCCCC-
Confidence            765       4799999998753                   223444555543    223 46899999987665332 


Q ss_pred             ccCCccchhhHhHhhhhHHH
Q 040431          123 EMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~  142 (157)
                          ....|..+|.+.+.+.
T Consensus       163 ----~~~~Y~~sK~a~~~~~  178 (256)
T PRK12748        163 ----DELAYAATKGAIEAFT  178 (256)
T ss_pred             ----CchHHHHHHHHHHHHH
Confidence                2457888888877763

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.58  E-value=5.9e-14  Score=104.78  Aligned_cols=131  Identities=11%  Similarity=0.088  Sum_probs=85.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~   77 (157)
                      ++++||||+|++|.++++.|++.|++|++++|+.... .+..+.+.......+.++.+|++|++++.+++.       ++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGL-AQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            4799999999999999999999999999998873211 011111111112235667899999988876654       47


Q ss_pred             CEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           78 DVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        78 d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      |+|||++|...                   ..+.    +.+++.+.+.+..++|+++||.......+     ....|..+
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~-----~~~~Y~~s  154 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALP-----WHAAYSAS  154 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCC-----CCcchHHH
Confidence            99999999743                   1222    33333344433246899999976543222     23457777


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      |.+.+.+
T Consensus       155 K~a~~~~  161 (272)
T PRK07832        155 KFGLRGL  161 (272)
T ss_pred             HHHHHHH
Confidence            7654443

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.58  E-value=1e-13  Score=115.31  Aligned_cols=130  Identities=12%  Similarity=0.129  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh----cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF----KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~----~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .+..+.+. +.    ....+..+.+|++|++++.++++   
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~-----~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~  488 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGAHVVLADLN-----LEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA  488 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999987     33333221 11    22357789999999999988876   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+||||||...                       ....+.+++.+.+.+..++||++||..+....     ...
T Consensus       489 ~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~-----~~~  563 (676)
T TIGR02632       489 LAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG-----KNA  563 (676)
T ss_pred             HhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC-----CCC
Confidence                5899999999753                       01123445555554423589999997654322     235


Q ss_pred             chhhHhHhhhhHHHH
Q 040431          129 DMLEMTELIDQKIFI  143 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (157)
                      ..|..+|.+.+.+..
T Consensus       564 ~aY~aSKaA~~~l~r  578 (676)
T TIGR02632       564 SAYSAAKAAEAHLAR  578 (676)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            689999988777743

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.57  E-value=8.5e-14  Score=101.29  Aligned_cols=118  Identities=12%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----CcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----QVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----~~d~v   80 (157)
                      |+++||||+|++|+++++.|.+.|++|++++|+     .++++.+.+.  .++.++++|++|++++.++++    ++|++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~-----~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~id~l   73 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGAR-----RDDLEVAAKE--LDVDAIVCDNTDPASLEEARGLFPHHLDTI   73 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHh--ccCcEEecCCCCHHHHHHHHHHHhhcCcEE
Confidence            379999999999999999999999999999987     4444333221  146788999999999988875    58999


Q ss_pred             EEcCCCcc----------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           81 ISTVGHTL----------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        81 v~~a~~~~----------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ||++|...                            ....+.+++.+.+   .++||++||...         .....|.
T Consensus        74 v~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~---~g~Iv~isS~~~---------~~~~~Y~  141 (223)
T PRK05884         74 VNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRS---GGSIISVVPENP---------PAGSAEA  141 (223)
T ss_pred             EECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCeEEEEecCCC---------CCccccH
Confidence            99987410                            1113333333332   358999998641         2245788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+...+
T Consensus       142 asKaal~~~  150 (223)
T PRK05884        142 AIKAALSNW  150 (223)
T ss_pred             HHHHHHHHH
Confidence            888877666

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.57  E-value=1.1e-13  Score=102.28  Aligned_cols=131  Identities=12%  Similarity=0.118  Sum_probs=90.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||+++++.|.+.|++ |++++|+.... ....+.+.. ....+.++.+|+++++++.++++       
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~-~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKG-EAQAAELEA-LGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHHHHh-cCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999 99998873221 111112211 23457789999999999888765       


Q ss_pred             CcCEEEEcCCCcc-------------------hHHHHHHH----HHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-------------------LADQVKII----AAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~~~~l~----~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++||++|...                   ..+...++    +.+.+.+..++++++||...+...+     ....|.
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~-----~~~~Y~  158 (260)
T PRK06198         84 RLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQP-----FLAAYC  158 (260)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCC-----CcchhH
Confidence            5899999999743                   11233333    3333433136899999987765322     245788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       159 ~sK~a~~~~  167 (260)
T PRK06198        159 ASKGALATL  167 (260)
T ss_pred             HHHHHHHHH
Confidence            888877666

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.57  E-value=4.8e-14  Score=107.89  Aligned_cols=129  Identities=17%  Similarity=0.140  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhc-CCCeEEEEccCCC--hHHHHHH---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFK-NLGVNLVIGDVLN--HESLVKA---   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~-~~~v~~~~~D~~~--~~~~~~~---   73 (157)
                      .+.++||||||+||.+++++|++.|++|++++|+     +++++.+.    ... ..++..+.+|+++  .+.+.++   
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~-----~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~  127 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARN-----PDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKET  127 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECC-----HHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHH
Confidence            4689999999999999999999999999999998     44443322    111 2357778899975  3333333   


Q ss_pred             hcC--cCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           74 IKQ--VDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        74 ~~~--~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                      +.+  +|++|||||...                         ...++.+++.+.+.+ .+++|++||..++....   .+
T Consensus       128 ~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~a~~~~~~---~p  203 (320)
T PLN02780        128 IEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGSGAAIVIPS---DP  203 (320)
T ss_pred             hcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEechhhccCCC---Cc
Confidence            333  569999998741                         122445566666666 68999999987653111   12


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+.+.+
T Consensus       204 ~~~~Y~aSKaal~~~  218 (320)
T PLN02780        204 LYAVYAATKAYIDQF  218 (320)
T ss_pred             cchHHHHHHHHHHHH
Confidence            357899999987666

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=8e-14  Score=98.40  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=96.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~   77 (157)
                      .+||||||+.+||.+|+++|.+.|-+|++..|+     .++++..+.. .+.+....+|+.|.++.++++.       ..
T Consensus         6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~-----e~~L~e~~~~-~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~l   79 (245)
T COG3967           6 NTILITGGASGIGLALAKRFLELGNTVIICGRN-----EERLAEAKAE-NPEIHTEVCDVADRDSRRELVEWLKKEYPNL   79 (245)
T ss_pred             cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCc-----HHHHHHHHhc-CcchheeeecccchhhHHHHHHHHHhhCCch
Confidence            589999999999999999999999999999999     6665443322 4578889999999988877764       58


Q ss_pred             CEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           78 DVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        78 d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      +++|||||+..                         +.-+..+++.+.+.. ...+|.+||.-++.++     ...+.|.
T Consensus        80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~-~a~IInVSSGLafvPm-----~~~PvYc  153 (245)
T COG3967          80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP-EATIINVSSGLAFVPM-----ASTPVYC  153 (245)
T ss_pred             heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CceEEEeccccccCcc-----cccccch
Confidence            99999999976                         333666777777775 5789999995554332     2345777


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .||.+..-+
T Consensus       154 aTKAaiHsy  162 (245)
T COG3967         154 ATKAAIHSY  162 (245)
T ss_pred             hhHHHHHHH
Confidence            887765444

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.57  E-value=1.1e-13  Score=108.55  Aligned_cols=126  Identities=14%  Similarity=0.173  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +++++||||+|+||++++++|.+.|++|++++|+.     ++.+........++..+.+|++|++++.+.+.++|++|||
T Consensus       178 gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~-----~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn  252 (406)
T PRK07424        178 GKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS-----DKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIIN  252 (406)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence            57899999999999999999999999999999873     3322111111234678899999999999999999999999


Q ss_pred             CCCcc----------------hHH----HHHHHHHHHHhcC---CccEEEeccccccccCCCccCCccchhhHhHhhhhH
Q 040431           84 VGHTL----------------LAD----QVKIIAAIKEAEG---ASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQK  140 (157)
Q Consensus        84 a~~~~----------------~~~----~~~l~~~~~~~~~---~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (157)
                      ||...                ..+    .+.+++.+++.+.   ...++++|+.. ..      +.....|..+|.+...
T Consensus       253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~-~~------~~~~~~Y~ASKaAl~~  325 (406)
T PRK07424        253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAE-VN------PAFSPLYELSKRALGD  325 (406)
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccc-cc------CCCchHHHHHHHHHHH
Confidence            98752                222    4444444544431   12355555421 11      1224579999998766


Q ss_pred             H
Q 040431          141 I  141 (157)
Q Consensus       141 ~  141 (157)
                      +
T Consensus       326 l  326 (406)
T PRK07424        326 L  326 (406)
T ss_pred             H
Confidence            5

>TIGR02415 23BDH acetoin reductases

Probab=99.57  E-value=1.7e-13  Score=100.97  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-Hhhhh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      ++++||||+|+||.+++++|++.|++|+++.|+.     ...+ ..++.  ...++.++.+|++|++++.+++.      
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~   75 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNE-----ETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKF   75 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999999999998873     2222 11222  13468889999999999887764      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       .+|+|||++|...                   ..++    +.+++.+.+.+..++++++||.......+     ....|
T Consensus        76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-----~~~~Y  150 (254)
T TIGR02415        76 GGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNP-----ILSAY  150 (254)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCC-----CCcch
Confidence             4799999998743                   1112    23444445543136899999966543222     34567


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       151 ~~sK~a~~~~~  161 (254)
T TIGR02415       151 SSTKFAVRGLT  161 (254)
T ss_pred             HHHHHHHHHHH
Confidence            77787766653

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.57  E-value=1.7e-13  Score=102.01  Aligned_cols=128  Identities=15%  Similarity=0.115  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+.     +..+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ-----EKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE   83 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999883     222211 111  12356788999999999888765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                        ++|++||+||...                   ..++..+++++...  ...++|+++||..++...     .....|.
T Consensus        84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~-----~~~~~Y~  158 (264)
T PRK07576         84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPM-----PMQAHVC  158 (264)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCC-----CCccHHH
Confidence              4799999997532                   22334444443321  113689999997655321     2345677


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       159 asK~a~~~l  167 (264)
T PRK07576        159 AAKAGVDML  167 (264)
T ss_pred             HHHHHHHHH
Confidence            777766555

>PRK06484 short chain dehydrogenase; Validated

Probab=99.57  E-value=1.1e-13  Score=111.97  Aligned_cols=130  Identities=13%  Similarity=0.120  Sum_probs=94.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.+++++|+++|++|++++|+     .++++.+.+.....+..+.+|++|++++.++++       .
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRD-----AEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGR  343 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999987     445544443334456778999999999888775       4


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|++|||||...                    ..++..+++++... ...++||++||..+....+     ....|..+|
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-----~~~~Y~asK  418 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALP-----PRNAYCASK  418 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCC-----CCchhHHHH
Confidence            899999999742                    22233333433322 1136899999987764322     345788888


Q ss_pred             hhhhHHHH
Q 040431          136 LIDQKIFI  143 (157)
Q Consensus       136 ~~~~~~~~  143 (157)
                      .+.+.+..
T Consensus       419 aal~~l~~  426 (520)
T PRK06484        419 AAVTMLSR  426 (520)
T ss_pred             HHHHHHHH
Confidence            87766633

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.57  E-value=9.8e-14  Score=100.88  Aligned_cols=123  Identities=14%  Similarity=0.099  Sum_probs=89.5

Q ss_pred             EEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhc-CCCeEEEEccCCChHHHHHHhc---CcCEEEE
Q 040431            8 LFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFK-NLGVNLVIGDVLNHESLVKAIK---QVDVVIS   82 (157)
Q Consensus         8 litGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~-~~~v~~~~~D~~~~~~~~~~~~---~~d~vv~   82 (157)
                      +||||+|++|+++++.|+++|++|++++|+     +++.+.+. +.. ..++.++.+|++|++++.++++   ++|++||
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~   75 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRS-----RDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVI   75 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEE
Confidence            599999999999999999999999999998     33333222 111 3468889999999999999887   4799999


Q ss_pred             cCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      ++|...                   ..+...+.++....+ .++|+++||.+++...     .+...|..+|.+.+.+
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~g~iv~~ss~~~~~~~-----~~~~~Y~~sK~a~~~~  147 (230)
T PRK07041         76 TAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAP-GGSLTFVSGFAAVRPS-----ASGVLQGAINAALEAL  147 (230)
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcC-CeEEEEECchhhcCCC-----CcchHHHHHHHHHHHH
Confidence            999743                   112334455444434 5799999998876542     2345677777766555

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.57  E-value=1.4e-13  Score=101.83  Aligned_cols=132  Identities=14%  Similarity=0.145  Sum_probs=87.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-Hhhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.++++.|++.|++|+++.++.... .+..+ ..++.  .+.++.++++|++|++++.+++.     
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAAS-KADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccc-hHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            37899999999999999999999999988777654322 22222 22222  13468889999999999988765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEe-ccc-cccccCCCccCCccchh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLR-TQK-GKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~-Ss~-~~~~~~~~~~~~~~~~~  131 (157)
                        ++|++||+||...                   ..++..+++++...- ..++++++ ||. +.+.       .....|
T Consensus        87 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~-------~~~~~Y  159 (257)
T PRK12744         87 FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT-------PFYSAY  159 (257)
T ss_pred             hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC-------CCcccc
Confidence              5899999999732                   122333444443321 02466665 343 2221       234678


Q ss_pred             hHhHhhhhHHHH
Q 040431          132 EMTELIDQKIFI  143 (157)
Q Consensus       132 ~~~~~~~~~~~~  143 (157)
                      ..+|.+.+.+..
T Consensus       160 ~~sK~a~~~~~~  171 (257)
T PRK12744        160 AGSKAPVEHFTR  171 (257)
T ss_pred             hhhHHHHHHHHH
Confidence            899988777743

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.57  E-value=1.5e-13  Score=100.20  Aligned_cols=121  Identities=12%  Similarity=0.096  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh-HHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH-ESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~~~~~~d~vv~   82 (157)
                      .++++||||+|+||++++++|+++|++|++++|+....           ...++.++.+|+.++ +++.+.+..+|+|||
T Consensus         5 ~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~   73 (235)
T PRK06550          5 TKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD-----------LSGNFHFLQLDLSDDLEPLFDWVPSVDILCN   73 (235)
T ss_pred             CCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc-----------cCCcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence            47899999999999999999999999999998874321           123578899999887 555555567999999


Q ss_pred             cCCCcc--------------------hHHHHHHHH----HHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhh
Q 040431           83 TVGHTL--------------------LADQVKIIA----AIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELID  138 (157)
Q Consensus        83 ~a~~~~--------------------~~~~~~l~~----~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~  138 (157)
                      +||...                    ..++..+++    .+.+.+ .++|+++||...+...+     ....|..+|.+.
T Consensus        74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~-----~~~~Y~~sK~a~  147 (235)
T PRK06550         74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK-SGIIINMCSIASFVAGG-----GGAAYTASKHAL  147 (235)
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhccCCC-----CCcccHHHHHHH
Confidence            999531                    122333334    344444 57899999977654322     234677777765


Q ss_pred             hHH
Q 040431          139 QKI  141 (157)
Q Consensus       139 ~~~  141 (157)
                      +.+
T Consensus       148 ~~~  150 (235)
T PRK06550        148 AGF  150 (235)
T ss_pred             HHH
Confidence            554

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.57  E-value=1e-13  Score=101.76  Aligned_cols=131  Identities=8%  Similarity=0.063  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++..+++    +++.+.+ ...  .+..+.++.+|++|.+++.+++.     
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRN----RDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRE   77 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCC----HHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHH
Confidence            56899999999999999999999999988776442    2222211 111  13457789999999999888875     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHh----c--CCccEEEeccccccccCCCccCCc
Q 040431           76 --QVDVVISTVGHTL--------------------LADQVKIIAAIKEA----E--GASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~----~--~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                        .+|+|||+||...                    ..++..+++++...    .  ..++++++||..+....+..    
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~----  153 (248)
T PRK06123         78 LGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGE----  153 (248)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCC----
Confidence              5899999999753                    12233344443322    1  12469999997654432221    


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       154 ~~~Y~~sKaa~~~~~  168 (248)
T PRK06123        154 YIDYAASKGAIDTMT  168 (248)
T ss_pred             ccchHHHHHHHHHHH
Confidence            235888888877763

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.56  E-value=4.8e-14  Score=104.07  Aligned_cols=109  Identities=20%  Similarity=0.304  Sum_probs=92.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      -...|+|||||+|+.+|.+|.+.|.+|++-.|..... +..++..-++  .++.+...|+.|++++.++++..++|||+.
T Consensus        62 iVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~-~r~lkvmGdL--GQvl~~~fd~~DedSIr~vvk~sNVVINLI  138 (391)
T KOG2865|consen   62 IVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYD-PRHLKVMGDL--GQVLFMKFDLRDEDSIRAVVKHSNVVINLI  138 (391)
T ss_pred             eEEEEecccccccHHHHHHHhhcCCeEEEeccCCccc-hhheeecccc--cceeeeccCCCCHHHHHHHHHhCcEEEEee
Confidence            3578999999999999999999999999999986543 3333322222  478999999999999999999999999999


Q ss_pred             CCcc-----------hHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           85 GHTL-----------LADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        85 ~~~~-----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      |-..           .++++.+...|++.| +.|||++|++++.
T Consensus       139 Grd~eTknf~f~Dvn~~~aerlAricke~G-VerfIhvS~Lgan  181 (391)
T KOG2865|consen  139 GRDYETKNFSFEDVNVHIAERLARICKEAG-VERFIHVSCLGAN  181 (391)
T ss_pred             ccccccCCcccccccchHHHHHHHHHHhhC-hhheeehhhcccc
Confidence            9754           677999999999999 9999999998854

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.56  E-value=1e-13  Score=101.51  Aligned_cols=127  Identities=10%  Similarity=0.104  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCC--hHHHHHHh---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLN--HESLVKAI---   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~--~~~~~~~~---   74 (157)
                      .++++||||+|++|++++++|++.|++|++++|+.     ++.+.+    .......+.++.+|+.+  .+++.+++   
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i   80 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ-----KKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATI   80 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh-----HHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHH
Confidence            47899999999999999999999999999999984     333222    11122356778899875  34444443   


Q ss_pred             -----cCcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccC
Q 040431           75 -----KQVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        75 -----~~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                           ..+|+|||+||...                    ..+    .+.+.+.+.+.+ .++++++||..+....     
T Consensus        81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~~~-----  154 (239)
T PRK08703         81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP-DASVIFVGESHGETPK-----  154 (239)
T ss_pred             HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC-CCEEEEEeccccccCC-----
Confidence                 35799999999631                    111    333444455555 5789999986543221     


Q ss_pred             CccchhhHhHhhhhHH
Q 040431          126 TTLDMLEMTELIDQKI  141 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~  141 (157)
                      .....|+.+|.+.+.+
T Consensus       155 ~~~~~Y~~sKaa~~~~  170 (239)
T PRK08703        155 AYWGGFGASKAALNYL  170 (239)
T ss_pred             CCccchHHhHHHHHHH
Confidence            2345789999887766

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.56  E-value=1.2e-13  Score=100.70  Aligned_cols=128  Identities=15%  Similarity=0.128  Sum_probs=87.6

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------CcCE
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QVDV   79 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~d~   79 (157)
                      ++||||+|++|++++++|+++|++|++++|+.........+.+.. ....+.++.+|++|++++.+++.       .+|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKA-YGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            589999999999999999999999999988742110011111111 12357889999999999888765       4799


Q ss_pred             EEEcCCCcc-------------------hHHHHHHHHHHHH----hcCCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           80 VISTVGHTL-------------------LADQVKIIAAIKE----AEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        80 vv~~a~~~~-------------------~~~~~~l~~~~~~----~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      |||++|...                   ..+...+++++..    .+ .++|+++||.+.+...     .....|..+|.
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~g~-----~~~~~y~~~k~  153 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQR-SGRIINISSVVGLMGN-----AGQANYAASKA  153 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEECCccccCCC-----CCCchhHHHHH
Confidence            999999853                   1224445555443    34 5699999997554322     23456788877


Q ss_pred             hhhHH
Q 040431          137 IDQKI  141 (157)
Q Consensus       137 ~~~~~  141 (157)
                      +.+.+
T Consensus       154 a~~~~  158 (239)
T TIGR01830       154 GVIGF  158 (239)
T ss_pred             HHHHH
Confidence            66555

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.56  E-value=2.7e-13  Score=102.13  Aligned_cols=133  Identities=14%  Similarity=0.095  Sum_probs=89.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC----CCCchhhH-hhhhc--CCCeEEEEccCCChHHHHHHhc-
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI----SGPSKSQL-LDHFK--NLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~----~~~~~~~~-~~~~~--~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      .++++||||+++||.++++.|++.|++|++++|+...    ...+..+. .++..  ..++.++.+|++|++++.++++ 
T Consensus         6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~   85 (286)
T PRK07791          6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA   85 (286)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999999999999999998876410    00122222 12221  3457788999999998887764 


Q ss_pred             ------CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcC-----CccEEEeccccccccCC
Q 040431           76 ------QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEG-----ASRGTLRTQKGKMSSLS  121 (157)
Q Consensus        76 ------~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~-----~~~~v~~Ss~~~~~~~~  121 (157)
                            ++|++|||||...                   ..+    ++.+++.+.+...     .++||++||..+....+
T Consensus        86 ~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~  165 (286)
T PRK07791         86 AVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQGSV  165 (286)
T ss_pred             HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcCCC
Confidence                  5899999999753                   111    3444455544320     25899999976654322


Q ss_pred             CccCCccchhhHhHhhhhHH
Q 040431          122 SEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~  141 (157)
                           ....|..+|.+.+.+
T Consensus       166 -----~~~~Y~asKaal~~l  180 (286)
T PRK07791        166 -----GQGNYSAAKAGIAAL  180 (286)
T ss_pred             -----CchhhHHHHHHHHHH
Confidence                 245677777765554

>PRK12742 oxidoreductase; Provisional

Probab=99.56  E-value=3e-13  Score=98.69  Aligned_cols=129  Identities=14%  Similarity=0.171  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|+||++++++|++.|++|+++.++.    .++.+.+...  .++.++.+|++|.+++.+++.   ++|++
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~----~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~l   79 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS----KDAAERLAQE--TGATAVQTDSADRDAVIDVVRKSGALDIL   79 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC----HHHHHHHHHH--hCCeEEecCCCCHHHHHHHHHHhCCCcEE
Confidence            47899999999999999999999999998876642    2333322211  246778899999998887775   48999


Q ss_pred             EEcCCCcc-------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhHhHhhhhH
Q 040431           81 ISTVGHTL-------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQK  140 (157)
Q Consensus        81 v~~a~~~~-------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (157)
                      ||+||...                   ..+...++..+... ...+++|++||......    .......|..+|.+.+.
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~----~~~~~~~Y~~sKaa~~~  155 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM----PVAGMAAYAASKSALQG  155 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC----CCCCCcchHHhHHHHHH
Confidence            99998753                   11223333333222 11468999999655321    11345678888887776


Q ss_pred             HH
Q 040431          141 IF  142 (157)
Q Consensus       141 ~~  142 (157)
                      +.
T Consensus       156 ~~  157 (237)
T PRK12742        156 MA  157 (237)
T ss_pred             HH
Confidence            64

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.56  E-value=4.9e-14  Score=103.83  Aligned_cols=134  Identities=16%  Similarity=0.253  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++|+||||.||||+|||+.|+..||+|++++.-.... ...++  ..+...+++.+.-|+..+     ++..+|-|+|+
T Consensus        27 ~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~-k~n~~--~~~~~~~fel~~hdv~~p-----l~~evD~IyhL   98 (350)
T KOG1429|consen   27 NLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGR-KENLE--HWIGHPNFELIRHDVVEP-----LLKEVDQIYHL   98 (350)
T ss_pred             CcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccc-hhhcc--hhccCcceeEEEeechhH-----HHHHhhhhhhh
Confidence            57999999999999999999999999999998764432 11111  122345666666666554     66788999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----c------CCccchhhHhHhh
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----M------TTTLDMLEMTELI  137 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----~------~~~~~~~~~~~~~  137 (157)
                      |++..               ..++.+++..++.-+  +||++.||..+|++....     +      ..+.+-|..-|.+
T Consensus        99 Aapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~  176 (350)
T KOG1429|consen   99 AAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRV  176 (350)
T ss_pred             ccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHHH
Confidence            99865               556888999998887  799999999999873111     1      2455566677777


Q ss_pred             hhHHHHHHHhc
Q 040431          138 DQKIFIYFWGR  148 (157)
Q Consensus       138 ~~~~~~~~~~~  148 (157)
                      .|.+ +..|..
T Consensus       177 aE~L-~~~y~k  186 (350)
T KOG1429|consen  177 AETL-CYAYHK  186 (350)
T ss_pred             HHHH-HHHhhc
Confidence            7777 555543

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.56  E-value=2.1e-13  Score=101.20  Aligned_cols=132  Identities=12%  Similarity=0.064  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCC-cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTG-YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG-~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+| .||+++++.|+++|++|++++|+.... .+..+.+++ ....++.++.+|+++++++.++++      
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   95 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRL-GETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL   95 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            57899999997 799999999999999999988873221 111111222 122468889999999998887765      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       .+|++||++|...                   ..+    .+.+++.+...+..++++++||...+...     .....|
T Consensus        96 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-----~~~~~Y  170 (262)
T PRK07831         96 GRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQ-----HGQAHY  170 (262)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC-----CCCcch
Confidence             5799999999642                   111    23334444443213689999886654322     234578


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+.+.+
T Consensus       171 ~~sKaal~~~  180 (262)
T PRK07831        171 AAAKAGVMAL  180 (262)
T ss_pred             HHHHHHHHHH
Confidence            8888877766

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.55  E-value=1.6e-13  Score=102.81  Aligned_cols=127  Identities=9%  Similarity=0.094  Sum_probs=87.8

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  ++||.++++.|++.|++|++..|+...  .+.++.+....... .++.+|++|++++.++++      
T Consensus         5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~--~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~   81 (274)
T PRK08415          5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL--KKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDL   81 (274)
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH--HHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence            5899999997  799999999999999999998887311  12233222211223 578999999999888765      


Q ss_pred             -CcCEEEEcCCCcc---------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -QVDVVISTVGHTL---------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -~~d~vv~~a~~~~---------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                       ++|++|||||...                           +..++.+++.+.+   .++|+++||.+.....     ..
T Consensus        82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~---~g~Iv~isS~~~~~~~-----~~  153 (274)
T PRK08415         82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND---GASVLTLSYLGGVKYV-----PH  153 (274)
T ss_pred             CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc---CCcEEEEecCCCccCC-----Cc
Confidence             5899999999631                           1224455555543   2589999997654322     22


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+...+
T Consensus       154 ~~~Y~asKaal~~l  167 (274)
T PRK08415        154 YNVMGVAKAALESS  167 (274)
T ss_pred             chhhhhHHHHHHHH
Confidence            45688888876555

>PRK06484 short chain dehydrogenase; Validated

Probab=99.55  E-value=2.5e-13  Score=109.89  Aligned_cols=128  Identities=13%  Similarity=0.146  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+++||.+++++|++.|++|+++.|+     .++++.+......++.++.+|++|++++.++++       +
T Consensus         5 ~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (520)
T PRK06484          5 SRVVLVTGAAGGIGRAACQRFARAGDQVVVADRN-----VERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGR   79 (520)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999988     444443333224467889999999999888765       5


Q ss_pred             cCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           77 VDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      +|++|||||...                         ....+.+++.+.+.+...++|++||..+....+     ....|
T Consensus        80 iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~-----~~~~Y  154 (520)
T PRK06484         80 IDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALP-----KRTAY  154 (520)
T ss_pred             CCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCC-----CCchH
Confidence            899999998721                         112445555555544123899999977654332     23568


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+.+.+
T Consensus       155 ~asKaal~~l  164 (520)
T PRK06484        155 SASKAAVISL  164 (520)
T ss_pred             HHHHHHHHHH
Confidence            8888876655

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.55  E-value=3.1e-13  Score=100.31  Aligned_cols=128  Identities=10%  Similarity=0.047  Sum_probs=88.7

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+  ++||.+++++|++.|++|++.+|+...  .+.++.+. +....++.++.+|++|++++.++++     
T Consensus         7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL--EKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc--hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            4789999997  899999999999999999998875322  23333332 2223467889999999999888765     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 --QVDVVISTVGHTL-----------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                        ++|++|||||...                       ...    .+.+++.+.+   .++||++||..+....     .
T Consensus        85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~g~Iv~isS~~~~~~~-----~  156 (257)
T PRK08594         85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE---GGSIVTLTYLGGERVV-----Q  156 (257)
T ss_pred             CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc---CceEEEEcccCCccCC-----C
Confidence              4899999998641                       011    2223333322   3689999997654322     2


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+...+
T Consensus       157 ~~~~Y~asKaal~~l  171 (257)
T PRK08594        157 NYNVMGVAKASLEAS  171 (257)
T ss_pred             CCchhHHHHHHHHHH
Confidence            245788888877666

>PRK08324 short chain dehydrogenase; Validated

Probab=99.54  E-value=2.7e-13  Score=113.05  Aligned_cols=130  Identities=15%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcC-CCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKN-LGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~-~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     .++.+.+.. ... .++.++.+|++|++++.++++      
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~-----~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLD-----EEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCC-----HHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999998     433332222 211 368899999999999887765      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHHHHH----HHHHHHhcCC-ccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL-------------------LADQVKI----IAAIKEAEGA-SRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~~~l----~~~~~~~~~~-~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|+|||+||...                   ..+...+    .+.+.+.+ . ++|+++||..+....     .....
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~-~~g~iV~vsS~~~~~~~-----~~~~~  570 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQG-LGGSIVFIASKNAVNPG-----PNFGA  570 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCcEEEEECCccccCCC-----CCcHH
Confidence             5899999999643                   1223334    44455554 3 689999997665432     23567


Q ss_pred             hhHhHhhhhHHHHH
Q 040431          131 LEMTELIDQKIFIY  144 (157)
Q Consensus       131 ~~~~~~~~~~~~~~  144 (157)
                      |..+|.+.+.+...
T Consensus       571 Y~asKaa~~~l~~~  584 (681)
T PRK08324        571 YGAAKAAELHLVRQ  584 (681)
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999988777443

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.54  E-value=5e-13  Score=97.62  Aligned_cols=125  Identities=10%  Similarity=0.043  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||.++++.|.+.|++|+++.|+     .++++.+ ++.  ....+..+.+|+.|+++++++++     
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~-----~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGATLILCDQD-----QSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999887     3333222 111  13457778899999999887753     


Q ss_pred             ---CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ---QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ---~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                         .+|++|||+|...                        ....+.+++.+.+.++.+.+|++||.....        ..
T Consensus        80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~--------~~  151 (227)
T PRK08862         80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQ--------DL  151 (227)
T ss_pred             hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC--------Cc
Confidence               5899999997432                        111233445555443246899999864331        24


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+...+
T Consensus       152 ~~Y~asKaal~~~  164 (227)
T PRK08862        152 TGVESSNALVSGF  164 (227)
T ss_pred             chhHHHHHHHHHH
Confidence            5688888876555

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.54  E-value=4.7e-13  Score=97.06  Aligned_cols=128  Identities=14%  Similarity=0.132  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      |++++||||+|++|++++++|++.|++|++++|+     +++.+.+..   .++.++.+|++|.+++++++.     ++|
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~-----~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~~d   72 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARD-----AAALAALQA---LGAEALALDVADPASVAGLAWKLDGEALD   72 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECC-----HHHHHHHHh---ccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence            4589999999999999999999999999999988     333333322   346789999999999888643     489


Q ss_pred             EEEEcCCCcc---------------------hHHHHHHHHHHHH---hcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           79 VVISTVGHTL---------------------LADQVKIIAAIKE---AEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~---------------------~~~~~~l~~~~~~---~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      ++||++|...                     ..++..+++++..   .. .++++++||.........  ..+...|..+
T Consensus        73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~~~--~~~~~~Y~~s  149 (222)
T PRK06953         73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAA-GGVLAVLSSRMGSIGDAT--GTTGWLYRAS  149 (222)
T ss_pred             EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhcc-CCeEEEEcCccccccccc--CCCccccHHh
Confidence            9999999851                     2234555555443   12 357899988654322111  1122368888


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+.+.+.
T Consensus       150 K~a~~~~~  157 (222)
T PRK06953        150 KAALNDAL  157 (222)
T ss_pred             HHHHHHHH
Confidence            88776663

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.54  E-value=5.2e-13  Score=101.59  Aligned_cols=135  Identities=13%  Similarity=0.061  Sum_probs=90.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCC-----CchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG-----PSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~-----~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .++++||||+++||.+++++|++.|++|++++|+.....     +++++.+. ..  ....+.++++|++|++++.++++
T Consensus         8 ~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~   87 (305)
T PRK08303          8 GKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVE   87 (305)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence            478999999999999999999999999999998753210     12222221 11  12357789999999999987765


Q ss_pred             -------CcCEEEEcC-CCc------c---------------------hHHHHHHHHHHHHhcCCccEEEeccccccccC
Q 040431           76 -------QVDVVISTV-GHT------L---------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL  120 (157)
Q Consensus        76 -------~~d~vv~~a-~~~------~---------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~  120 (157)
                             ++|++|||| |..      .                     ...++.+++.+.+.+ .++||++||..+....
T Consensus        88 ~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~-~g~IV~isS~~~~~~~  166 (305)
T PRK08303         88 RIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP-GGLVVEITDGTAEYNA  166 (305)
T ss_pred             HHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC-CcEEEEECCccccccC
Confidence                   589999999 631      1                     112445556665554 4789999985442111


Q ss_pred             CCccCCccchhhHhHhhhhHH
Q 040431          121 SSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      ..  ......|..+|.+...+
T Consensus       167 ~~--~~~~~~Y~asKaal~~l  185 (305)
T PRK08303        167 TH--YRLSVFYDLAKTSVNRL  185 (305)
T ss_pred             cC--CCCcchhHHHHHHHHHH
Confidence            10  11244688888876555

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.53  E-value=8e-13  Score=97.91  Aligned_cols=132  Identities=9%  Similarity=0.041  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCC------CCchhhHh-hhh--cCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTIS------GPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~------~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~   72 (157)
                      .++++||||+|  +||+++|++|+++|++|++..|.....      ..+....+ ++.  ....+.++.+|++|++++.+
T Consensus         6 ~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~   85 (256)
T PRK12859          6 NKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKE   85 (256)
T ss_pred             CcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence            57999999995  899999999999999998876432111      01111111 111  13467889999999999988


Q ss_pred             Hhc-------CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           73 AIK-------QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        73 ~~~-------~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      ++.       .+|++||+||...                       ...++.+++.+.+.+ .++||++||..+....  
T Consensus        86 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~--  162 (256)
T PRK12859         86 LLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS-GGRIINMTSGQFQGPM--  162 (256)
T ss_pred             HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEEcccccCCCC--
Confidence            875       4799999999753                       112445566666554 5799999997655322  


Q ss_pred             ccCCccchhhHhHhhhhHH
Q 040431          123 EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (157)
                         .....|..+|.+...+
T Consensus       163 ---~~~~~Y~~sK~a~~~l  178 (256)
T PRK12859        163 ---VGELAYAATKGAIDAL  178 (256)
T ss_pred             ---CCchHHHHHHHHHHHH
Confidence               2356888888877666

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.53  E-value=2.6e-13  Score=120.47  Aligned_cols=140  Identities=14%  Similarity=0.202  Sum_probs=102.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC----CcEEEEecCCCCCCCchhhHhhh----------hcCCCeEEEEccCCC---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG----HPTFVLVRESTISGPSKSQLLDH----------FKNLGVNLVIGDVLN---   66 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~v~~~~~D~~~---   66 (157)
                      .++|+|||||||+|++++++|++.+    ++|+++.|.....  ...+.+..          ....++.++.+|+++   
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~--~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEE--AGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChH--HHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence            4689999999999999999999887    7899999974321  11111111          112368999999964   


Q ss_pred             ---hHHHHHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC----------
Q 040431           67 ---HESLVKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS----------  121 (157)
Q Consensus        67 ---~~~~~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~----------  121 (157)
                         .+.+.++..++|+|||+|+...            +.++.++++++.+.+ .++|+|+||.++|+...          
T Consensus      1049 gl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~v~vSS~~v~~~~~~~~~~~~~~~ 1127 (1389)
T TIGR03443      1049 GLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGK-AKQFSFVSSTSALDTEYYVNLSDELVQ 1127 (1389)
T ss_pred             CcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCC-CceEEEEeCeeecCcccccchhhhhhh
Confidence               4566777778999999999854            566899999999887 78999999998874210          


Q ss_pred             -------Cc------cCCccchhhHhHhhhhHHHHHHH
Q 040431          122 -------SE------MTTTLDMLEMTELIDQKIFIYFW  146 (157)
Q Consensus       122 -------~~------~~~~~~~~~~~~~~~~~~~~~~~  146 (157)
                             ..      .......|..+|.+.|.+...+.
T Consensus      1128 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~ 1165 (1389)
T TIGR03443      1128 AGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAG 1165 (1389)
T ss_pred             ccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHH
Confidence                   00      01123469999999998865543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.53  E-value=3.5e-13  Score=100.82  Aligned_cols=127  Identities=10%  Similarity=0.075  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||++  +||.+++++|++.|++|++..|+...  .+..+.+.+... ...++++|++|++++.++++      
T Consensus         7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~--~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (271)
T PRK06505          7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL--GKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKKW   83 (271)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH--HHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            57899999997  99999999999999999998876211  112222221111 23568999999999988865      


Q ss_pred             -CcCEEEEcCCCcc---------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -QVDVVISTVGHTL---------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -~~d~vv~~a~~~~---------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                       .+|++|||||...                           ...++.+++.+.+   .++||++||.++....     ..
T Consensus        84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~---~G~Iv~isS~~~~~~~-----~~  155 (271)
T PRK06505         84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD---GGSMLTLTYGGSTRVM-----PN  155 (271)
T ss_pred             CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc---CceEEEEcCCCccccC-----Cc
Confidence             5899999999641                           1113334444442   2689999997654322     22


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+-..+
T Consensus       156 ~~~Y~asKaAl~~l  169 (271)
T PRK06505        156 YNVMGVAKAALEAS  169 (271)
T ss_pred             cchhhhhHHHHHHH
Confidence            45678888765555

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.53  E-value=4.4e-13  Score=101.90  Aligned_cols=130  Identities=12%  Similarity=0.111  Sum_probs=90.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-Hhhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|++.|++|++.++...    ...+ ..++.  ....+.++.+|++|++++.++++     
T Consensus        12 ~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~----~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792         12 GKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA----LDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch----hHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            579999999999999999999999999998887532    1221 11222  23467889999999998888765     


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhc------CCccEEEeccccccccCCCccC
Q 040431           76 -QVDVVISTVGHTL-------------------LADQVKIIAAI----KEAE------GASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~------~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                       ++|++|||||...                   ..++..+++++    .+..      ..+++|++||.......     
T Consensus        88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----  162 (306)
T PRK07792         88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP-----  162 (306)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC-----
Confidence             5899999999853                   12233344433    2221      02589999997655322     


Q ss_pred             CccchhhHhHhhhhHHH
Q 040431          126 TTLDMLEMTELIDQKIF  142 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~  142 (157)
                      .....|..+|.+.+.+.
T Consensus       163 ~~~~~Y~asKaal~~l~  179 (306)
T PRK07792        163 VGQANYGAAKAGITALT  179 (306)
T ss_pred             CCCchHHHHHHHHHHHH
Confidence            22447888888776663

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.53  E-value=3.5e-13  Score=96.37  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=99.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCch-hhHhhhh--cCCCeEEEEccCCChHHHHHHhc-
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSK-SQLLDHF--KNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~-~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      |+ ++.|+||||+.+||..|+++|++. |.++++.+++.    +++ .+.++..  .+.++..+++|+++.+++.++.+ 
T Consensus         1 Ms-pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~----~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~   75 (249)
T KOG1611|consen    1 MS-PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARD----PEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQE   75 (249)
T ss_pred             CC-CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCC----hHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHH
Confidence            66 778999999999999999999976 45666555542    333 3333332  46789999999999988888765 


Q ss_pred             --------CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCc-----------cEEEec
Q 040431           76 --------QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGAS-----------RGTLRT  112 (157)
Q Consensus        76 --------~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~-----------~~v~~S  112 (157)
                              +.|.+++|||...                        +-.++.+++++++.. .+           .+|++|
T Consensus        76 V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaa-s~~~gd~~s~~raaIinis  154 (249)
T KOG1611|consen   76 VEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAA-SKVSGDGLSVSRAAIINIS  154 (249)
T ss_pred             HHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHh-hcccCCcccccceeEEEee
Confidence                    5899999999976                        333777888877765 33           799999


Q ss_pred             cccccccCCCccCCccchhhHhHhhhhHH
Q 040431          113 QKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       113 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      |....  .....+.+...|.++|.+-..+
T Consensus       155 S~~~s--~~~~~~~~~~AYrmSKaAlN~f  181 (249)
T KOG1611|consen  155 SSAGS--IGGFRPGGLSAYRMSKAALNMF  181 (249)
T ss_pred             ccccc--cCCCCCcchhhhHhhHHHHHHH
Confidence            86654  4444567788899999877544

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.52  E-value=4.1e-13  Score=98.00  Aligned_cols=124  Identities=19%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~   79 (157)
                      |+++||||+|+||++++++|++.|  +.|....|+...          +....++.++++|++|+++++++.+   ++|+
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~   70 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP----------DFQHDNVQWHALDVTDEAEIKQLSEQFTQLDW   70 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc----------ccccCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            489999999999999999999986  455555554221          1123468889999999998777544   7899


Q ss_pred             EEEcCCCcc-----------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           80 VISTVGHTL-----------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        80 vv~~a~~~~-----------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                      +||++|...                             ...++.+++.+.+.+ .++++++||.....  ......+...
T Consensus        71 li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~~~i~~iss~~~~~--~~~~~~~~~~  147 (235)
T PRK09009         71 LINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE-SAKFAVISAKVGSI--SDNRLGGWYS  147 (235)
T ss_pred             EEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC-CceEEEEeeccccc--ccCCCCCcch
Confidence            999999862                             112344555555554 56899998743321  1111234568


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       148 Y~asK~a~~~~  158 (235)
T PRK09009        148 YRASKAALNMF  158 (235)
T ss_pred             hhhhHHHHHHH
Confidence            88888877766

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.52  E-value=6.1e-13  Score=98.26  Aligned_cols=77  Identities=23%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++||||+|+||++++++|++.|++|++++|+...    ..+...   ......+.+|++|.+++.+.+.++|++|||
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~----~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~iDilVnn   86 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKIN----NSESND---ESPNEWIKWECGKEESLDKQLASLDVLILN   86 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchh----hhhhhc---cCCCeEEEeeCCCHHHHHHhcCCCCEEEEC
Confidence            4789999999999999999999999999999987421    111111   112357889999999999988899999999


Q ss_pred             CCCc
Q 040431           84 VGHT   87 (157)
Q Consensus        84 a~~~   87 (157)
                      ||..
T Consensus        87 AG~~   90 (245)
T PRK12367         87 HGIN   90 (245)
T ss_pred             CccC
Confidence            9974

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.52  E-value=4.1e-13  Score=95.46  Aligned_cols=125  Identities=14%  Similarity=0.136  Sum_probs=95.7

Q ss_pred             CCCCCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            1 MASKSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         1 M~~~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      |+..++|+||| +.|+||-+|++.+.++|+.|++..|.     -++...|.-  ..++...++|+++++++.+...    
T Consensus         4 ~~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~-----~e~M~~L~~--~~gl~~~kLDV~~~~~V~~v~~evr~   76 (289)
T KOG1209|consen    4 QSQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR-----LEPMAQLAI--QFGLKPYKLDVSKPEEVVTVSGEVRA   76 (289)
T ss_pred             ccCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc-----cchHhhHHH--hhCCeeEEeccCChHHHHHHHHHHhh
Confidence            34568899999 56999999999999999999999998     444444431  2358899999999999887754    


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          +.|.++||||..-                       ++..+.+.+.+.+.+  +.||+++|+.++-+.+.     .
T Consensus        77 ~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK--GtIVnvgSl~~~vpfpf-----~  149 (289)
T KOG1209|consen   77 NPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK--GTIVNVGSLAGVVPFPF-----G  149 (289)
T ss_pred             CCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc--ceEEEecceeEEeccch-----h
Confidence                4899999999853                       444667777777764  78999999988865433     4


Q ss_pred             chhhHhHhhhh
Q 040431          129 DMLEMTELIDQ  139 (157)
Q Consensus       129 ~~~~~~~~~~~  139 (157)
                      ..|..+|.+..
T Consensus       150 ~iYsAsKAAih  160 (289)
T KOG1209|consen  150 SIYSASKAAIH  160 (289)
T ss_pred             hhhhHHHHHHH
Confidence            56777776553

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.52  E-value=9e-13  Score=96.80  Aligned_cols=128  Identities=13%  Similarity=0.075  Sum_probs=90.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|++|+++++.|+++|++|++++|+     +.+.+.. ++.  ...++.++.+|++|++++.++++     
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN-----QEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED   79 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999887     3333222 211  13467889999999988877665     


Q ss_pred             --CcCEEEEcCCCcc----------------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCC
Q 040431           76 --QVDVVISTVGHTL----------------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLS  121 (157)
Q Consensus        76 --~~d~vv~~a~~~~----------------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~  121 (157)
                        .+|+|||++|...                            +.+    .+.+++.+.+.....+++++||.+.++.  
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~--  157 (253)
T PRK08217         80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN--  157 (253)
T ss_pred             cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC--
Confidence              4799999998522                            111    2233444444421357999999766543  


Q ss_pred             CccCCccchhhHhHhhhhHHH
Q 040431          122 SEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~  142 (157)
                          .....|..+|.+.+.+.
T Consensus       158 ----~~~~~Y~~sK~a~~~l~  174 (253)
T PRK08217        158 ----MGQTNYSASKAGVAAMT  174 (253)
T ss_pred             ----CCCchhHHHHHHHHHHH
Confidence                23567888888776663

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.52  E-value=4.2e-13  Score=98.10  Aligned_cols=128  Identities=13%  Similarity=0.042  Sum_probs=85.9

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------CcCE
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QVDV   79 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~d~   79 (157)
                      ++||||+|+||.++++.|+++|++|+++.|.......+..+.+.. ...++.++.+|++|++++.++++       ..|+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQA-QGGNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-cCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            589999999999999999999999998887632110111111111 13468899999999999887765       4799


Q ss_pred             EEEcCCCcc-------------------hHHHHHHHHHH-----HHhcCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           80 VISTVGHTL-------------------LADQVKIIAAI-----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        80 vv~~a~~~~-------------------~~~~~~l~~~~-----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +||++|...                   ..++..+++++     .+.+ .++|+++||.......+     ....|..+|
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~vsS~~~~~~~~-----~~~~Y~~sK  153 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ-GGRIITLASVSGVMGNR-----GQVNYSAAK  153 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEEEEcchhhccCCC-----CCcchHHHH
Confidence            999999643                   22233444433     2233 57899999976554322     234677777


Q ss_pred             hhhhHH
Q 040431          136 LIDQKI  141 (157)
Q Consensus       136 ~~~~~~  141 (157)
                      .+.+.+
T Consensus       154 ~a~~~~  159 (239)
T TIGR01831       154 AGLIGA  159 (239)
T ss_pred             HHHHHH
Confidence            765444

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.52  E-value=2.4e-13  Score=113.12  Aligned_cols=113  Identities=18%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      .|+|+||||+||||++|++.|.+.|++|...                          ..|++|.+.+...+.  ++|+||
T Consensus       380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------------~~~l~d~~~v~~~i~~~~pd~Vi  433 (668)
T PLN02260        380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------------KGRLEDRSSLLADIRNVKPTHVF  433 (668)
T ss_pred             CceEEEECCCchHHHHHHHHHHhCCCeEEee--------------------------ccccccHHHHHHHHHhhCCCEEE
Confidence            5789999999999999999999999887311                          135678888877776  799999


Q ss_pred             EcCCCcc------------------hHHHHHHHHHHHHhcCCccEEEeccccccccC---------C--Cc-cC-Cccch
Q 040431           82 STVGHTL------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL---------S--SE-MT-TTLDM  130 (157)
Q Consensus        82 ~~a~~~~------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~---------~--~~-~~-~~~~~  130 (157)
                      |+|+...                  ..++.+++++|++.+ ++ ++++||..+|+..         +  .+ .+ .+.++
T Consensus       434 h~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g-~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~  511 (668)
T PLN02260        434 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG-LL-MMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSF  511 (668)
T ss_pred             ECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC-Ce-EEEEcccceecCCcccccccCCCCCcCCCCCCCCCh
Confidence            9998651                  446899999999998 64 6677776665410         1  11 12 23478


Q ss_pred             hhHhHhhhhHHHHH
Q 040431          131 LEMTELIDQKIFIY  144 (157)
Q Consensus       131 ~~~~~~~~~~~~~~  144 (157)
                      |+.+|.+.|.+...
T Consensus       512 Yg~sK~~~E~~~~~  525 (668)
T PLN02260        512 YSKTKAMVEELLRE  525 (668)
T ss_pred             hhHHHHHHHHHHHh
Confidence            99999999988544

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.51  E-value=6.8e-13  Score=92.17  Aligned_cols=102  Identities=27%  Similarity=0.388  Sum_probs=85.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |||.|+||||.+|+.+++...++||+|++++|+++     +...     ..++..++.|+.|++++.+.+.+.|+||...
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~-----K~~~-----~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~   70 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNAS-----KLAA-----RQGVTILQKDIFDLTSLASDLAGHDAVISAF   70 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChH-----hccc-----cccceeecccccChhhhHhhhcCCceEEEec
Confidence            58999999999999999999999999999999944     3311     1567889999999999999999999999988


Q ss_pred             CCcc-------hHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           85 GHTL-------LADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        85 ~~~~-------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      +...       ......++..++..+ ++|++.++..+..
T Consensus        71 ~~~~~~~~~~~~k~~~~li~~l~~ag-v~RllVVGGAGSL  109 (211)
T COG2910          71 GAGASDNDELHSKSIEALIEALKGAG-VPRLLVVGGAGSL  109 (211)
T ss_pred             cCCCCChhHHHHHHHHHHHHHHhhcC-CeeEEEEcCccce
Confidence            8873       333566888888888 8999999877654

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.51  E-value=5.4e-13  Score=99.64  Aligned_cols=126  Identities=13%  Similarity=0.107  Sum_probs=99.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .+-|+|||...+.|..+|++|.++|+.|++-...     ++.++.+.... .+....++.|++++++++++.+       
T Consensus        29 ~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~-----~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~  103 (322)
T KOG1610|consen   29 DKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLT-----EEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLG  103 (322)
T ss_pred             CcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeec-----CchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcc
Confidence            4679999999999999999999999999988855     44455554443 6778889999999999998875       


Q ss_pred             --CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        +...||||||+..                        +..++.++..++++.  +|+|++||..+-...     +...
T Consensus       104 ~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar--GRvVnvsS~~GR~~~-----p~~g  176 (322)
T KOG1610|consen  104 EDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR--GRVVNVSSVLGRVAL-----PALG  176 (322)
T ss_pred             cccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--CeEEEecccccCccC-----cccc
Confidence              5789999999764                        555888999999885  799999997763322     2355


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      +|..+|.+.+.+
T Consensus       177 ~Y~~SK~aVeaf  188 (322)
T KOG1610|consen  177 PYCVSKFAVEAF  188 (322)
T ss_pred             cchhhHHHHHHH
Confidence            677777765544

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.51  E-value=8e-13  Score=98.27  Aligned_cols=128  Identities=11%  Similarity=0.066  Sum_probs=85.8

Q ss_pred             CCeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||  +++||+++++.|++.|++|++..|....  .+.++.+.... .....+++|++|++++++++.      
T Consensus         6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (261)
T PRK08690          6 GKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL--EERVRKMAAEL-DSELVFRCDVASDDEINQVFADLGKHW   82 (261)
T ss_pred             CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHH--HHHHHHHHhcc-CCceEEECCCCCHHHHHHHHHHHHHHh
Confidence            478999997  6799999999999999999987765211  22232222211 234578999999999988874      


Q ss_pred             -CcCEEEEcCCCcc------------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 -QVDVVISTVGHTL------------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                       ++|++|||||...                        ..+    ++.++..+++.  .++||++||.+.....     .
T Consensus        83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~--~g~Iv~iss~~~~~~~-----~  155 (261)
T PRK08690         83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR--NSAIVALSYLGAVRAI-----P  155 (261)
T ss_pred             CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc--CcEEEEEcccccccCC-----C
Confidence             5899999998752                        000    22233333332  3689999997765322     2


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+-..+
T Consensus       156 ~~~~Y~asKaal~~l  170 (261)
T PRK08690        156 NYNVMGMAKASLEAG  170 (261)
T ss_pred             CcccchhHHHHHHHH
Confidence            345677888766555

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.51  E-value=8.1e-13  Score=96.46  Aligned_cols=131  Identities=18%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc-CCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK-NLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~-~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|++|+++++.|++.|++|++++|+     +++...+ ++.. ..++.++.+|+.|+++++++++      
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN-----ENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999998     4444333 2221 2357889999999998887765      


Q ss_pred             -CcCEEEEcCCCcc-----------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           76 -QVDVVISTVGHTL-----------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                       ++|.+||+++...                 ......+++.+... ...++++++||..+...    ...+...|..+|.
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~----~~~~~~~Y~~sK~  155 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK----ASPDQLSYAVAKA  155 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc----CCCCchHHHHHHH
Confidence             3699999998642                 11122222332221 01257999998755221    1123456888887


Q ss_pred             hhhHHHH
Q 040431          137 IDQKIFI  143 (157)
Q Consensus       137 ~~~~~~~  143 (157)
                      +.+.+..
T Consensus       156 ~~~~~~~  162 (238)
T PRK05786        156 GLAKAVE  162 (238)
T ss_pred             HHHHHHH
Confidence            6655533

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.50  E-value=1.3e-12  Score=97.04  Aligned_cols=129  Identities=11%  Similarity=0.015  Sum_probs=88.8

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCC-CCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTIS-GPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+  ++||++++++|++.|++|++..|+.... ..+.++.+.+. ...+.++.+|++|++++.++++     
T Consensus         6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP-LNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc-cCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            4789999986  7999999999999999998887653211 01222222221 1246788999999999988775     


Q ss_pred             --CcCEEEEcCCCcc---------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 --QVDVVISTVGHTL---------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 --~~d~vv~~a~~~~---------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                        .+|++|||||...                           ...++.+++.+.+   .++|+++||.......     .
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~---~g~Iv~isS~~~~~~~-----~  156 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE---GGSIVTLTYLGGVRAI-----P  156 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh---CCeEEEEeccccccCC-----c
Confidence              5899999999641                           1114445555543   2589999997654321     2


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+...+
T Consensus       157 ~~~~Y~asKaal~~l  171 (258)
T PRK07370        157 NYNVMGVAKAALEAS  171 (258)
T ss_pred             ccchhhHHHHHHHHH
Confidence            345788888876665

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.50  E-value=1e-12  Score=98.49  Aligned_cols=107  Identities=17%  Similarity=0.211  Sum_probs=74.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++|||| |+||++++++|. .|++|++++|+     .++.+.+ ++..  ..++.++.+|++|++++.++++     
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~   74 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYN-----EENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTL   74 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCC-----HHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhc
Confidence            678999997 799999999996 79999999987     3333221 2221  2357889999999999888875     


Q ss_pred             -CcCEEEEcCCCcc------------hHHHHHHHHHHHHh-cCCccEEEecccccc
Q 040431           76 -QVDVVISTVGHTL------------LADQVKIIAAIKEA-EGASRGTLRTQKGKM  117 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~  117 (157)
                       .+|++|||||...            ..++..+++++... ...++++++||..+.
T Consensus        75 g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~  130 (275)
T PRK06940         75 GPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGH  130 (275)
T ss_pred             CCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccc
Confidence             5899999999754            22333444443322 002456788876554

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.50  E-value=1.2e-12  Score=97.22  Aligned_cols=127  Identities=9%  Similarity=-0.018  Sum_probs=87.0

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  ++||.+++++|++.|++|++.+|+...  .+.++.+.+.. ..+.++.+|++|++++.++++      
T Consensus        10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~--~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   86 (258)
T PRK07533         10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA--RPYVEPLAEEL-DAPIFLPLDVREPGQLEAVFARIAEEW   86 (258)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh--HHHHHHHHHhh-ccceEEecCcCCHHHHHHHHHHHHHHc
Confidence            4789999998  499999999999999999998887321  11222222211 235678999999999888764      


Q ss_pred             -CcCEEEEcCCCcc---------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -QVDVVISTVGHTL---------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -~~d~vv~~a~~~~---------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                       .+|++|||||...                           ...++.+++.+.+   .++++++||.+.....     ..
T Consensus        87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~---~g~Ii~iss~~~~~~~-----~~  158 (258)
T PRK07533         87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN---GGSLLTMSYYGAEKVV-----EN  158 (258)
T ss_pred             CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc---CCEEEEEeccccccCC-----cc
Confidence             5899999998631                           1114445555532   2589999987654321     23


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+...+
T Consensus       159 ~~~Y~asKaal~~l  172 (258)
T PRK07533        159 YNLMGPVKAALESS  172 (258)
T ss_pred             chhhHHHHHHHHHH
Confidence            45688888876555

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.50  E-value=2e-13  Score=100.33  Aligned_cols=115  Identities=23%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-CcCEEEEcCC
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-QVDVVISTVG   85 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~~d~vv~~a~   85 (157)
                      |+||||||+||++|+..|.+.||+|++++|++...+     .   ..+.++.       .-+.+.+... ++|+|||+||
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~-----~---~~~~~v~-------~~~~~~~~~~~~~DavINLAG   65 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKAS-----Q---NLHPNVT-------LWEGLADALTLGIDAVINLAG   65 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchh-----h---hcCcccc-------ccchhhhcccCCCCEEEECCC
Confidence            689999999999999999999999999999965431     0   0111221       2223333344 7999999999


Q ss_pred             Ccc-----------------hHHHHHHHHHHHHhcC-CccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           86 HTL-----------------LADQVKIIAAIKEAEG-ASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        86 ~~~-----------------~~~~~~l~~~~~~~~~-~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      ..-                 +..|+.++++..+... .+.++.-|.++.|+.......+..++.+-..+
T Consensus        66 ~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fl  134 (297)
T COG1090          66 EPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFL  134 (297)
T ss_pred             CccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCCChH
Confidence            864                 6668999999885542 45677777777787664444333344443333

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.49  E-value=1.8e-12  Score=96.54  Aligned_cols=130  Identities=12%  Similarity=0.060  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||++  +||.++++.|++.|++|++..|+. .. .+..+.+... ...+.++.+|++|++++.++++      
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~-~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   82 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KL-KGRVEEFAAQ-LGSDIVLPCDVAEDASIDAMFAELGKVW   82 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hH-HHHHHHHHhc-cCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence            47899999985  999999999999999999887762 11 1223222221 1346678999999999998875      


Q ss_pred             -CcCEEEEcCCCcc------------------------hHHHHHHHHHHHH--hcCCccEEEeccccccccCCCccCCcc
Q 040431           76 -QVDVVISTVGHTL------------------------LADQVKIIAAIKE--AEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~--~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                       .+|++|||||...                        ..+...+.+++..  .. .++|+++||.+.....     ...
T Consensus        83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~g~Iv~iss~~~~~~~-----~~~  156 (262)
T PRK07984         83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-GSALLTLSYLGAERAI-----PNY  156 (262)
T ss_pred             CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC-CcEEEEEecCCCCCCC-----CCc
Confidence             4899999998531                        0111122222211  12 3689999987654322     234


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       157 ~~Y~asKaal~~l~  170 (262)
T PRK07984        157 NVMGLAKASLEANV  170 (262)
T ss_pred             chhHHHHHHHHHHH
Confidence            57888888776663

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.49  E-value=2.5e-13  Score=101.86  Aligned_cols=99  Identities=24%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcCCC
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGH   86 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a~~   86 (157)
                      |+|||||||||+++++.|++.|++|++++|+......     +.   ...    ..|+.. +...+.+.++|+|||+|+.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~---~~~----~~~~~~-~~~~~~~~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGAN-----TK---WEG----YKPWAP-LAESEALEGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCc-----cc---cee----eecccc-cchhhhcCCCCEEEECCCC
Confidence            6899999999999999999999999999998543211     00   001    112222 3455667789999999986


Q ss_pred             cc-----------------hHHHHHHHHHHHHhcCC--ccEEEecccccccc
Q 040431           87 TL-----------------LADQVKIIAAIKEAEGA--SRGTLRTQKGKMSS  119 (157)
Q Consensus        87 ~~-----------------~~~~~~l~~~~~~~~~~--~~~v~~Ss~~~~~~  119 (157)
                      ..                 +.+++++++++.+.+ .  .+++++|+.+.|+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~~i~~S~~~~yg~  118 (292)
T TIGR01777        68 PIADKRWTEERKQEIRDSRIDTTRALVEAIAAAE-QKPKVFISASAVGYYGT  118 (292)
T ss_pred             CcccccCCHHHHHHHHhcccHHHHHHHHHHHhcC-CCceEEEEeeeEEEeCC
Confidence            32                 445889999999987 4  35666777777764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.48  E-value=1.1e-12  Score=97.19  Aligned_cols=127  Identities=15%  Similarity=0.128  Sum_probs=88.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHh----CCCcEEEEecCCCCCCCchhhHh-hhh----cCCCeEEEEccCCChHHHHHHhcC
Q 040431            6 KILFIGGTGYIGKFTVEASVK----AGHPTFVLVRESTISGPSKSQLL-DHF----KNLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~----~g~~v~~~~r~~~~~~~~~~~~~-~~~----~~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      .++||||+++||.+++++|++    .|++|+++.|+     .++++.+ ++.    ...++.++.+|++|++++.++++.
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~   76 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARN-----DEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKA   76 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcC-----HHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHH
Confidence            589999999999999999997    79999999998     3333322 112    233678899999999988877641


Q ss_pred             -----------cCEEEEcCCCcc--------------------------hHHHHHHHHHHHHhc-CCccEEEeccccccc
Q 040431           77 -----------VDVVISTVGHTL--------------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMS  118 (157)
Q Consensus        77 -----------~d~vv~~a~~~~--------------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~  118 (157)
                                 .|++|||||...                          ...++.+++++.+.+ ..++|+++||.....
T Consensus        77 ~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~  156 (256)
T TIGR01500        77 LRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ  156 (256)
T ss_pred             HHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC
Confidence                       258999998631                          111344555555442 135899999987654


Q ss_pred             cCCCccCCccchhhHhHhhhhHHH
Q 040431          119 SLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ..     .....|..+|.+.+.+.
T Consensus       157 ~~-----~~~~~Y~asKaal~~l~  175 (256)
T TIGR01500       157 PF-----KGWALYCAGKAARDMLF  175 (256)
T ss_pred             CC-----CCchHHHHHHHHHHHHH
Confidence            32     23457888888776663

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.48  E-value=1.3e-12  Score=97.03  Aligned_cols=127  Identities=12%  Similarity=0.045  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||++  +||.++++.|.+.|++|++..|+.. . .+.++.+..... ...++++|++|+++++++++      
T Consensus         8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~-~-~~~~~~l~~~~g-~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (260)
T PRK06603          8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEV-L-EKRVKPLAEEIG-CNFVSELDVTNPKSISNLFDDIKEKW   84 (260)
T ss_pred             CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchH-H-HHHHHHHHHhcC-CceEEEccCCCHHHHHHHHHHHHHHc
Confidence            47899999997  8999999999999999998877521 1 122222222111 23457899999999888875      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -QVDVVISTVGHTL-----------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                       .+|++|||||...                       ..+    .+.+++.+.+   .++||++||.+.....     ..
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~---~G~Iv~isS~~~~~~~-----~~  156 (260)
T PRK06603         85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD---GGSIVTLTYYGAEKVI-----PN  156 (260)
T ss_pred             CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CceEEEEecCccccCC-----Cc
Confidence             4899999998631                       111    2223333332   3689999997654322     22


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+...+
T Consensus       157 ~~~Y~asKaal~~l  170 (260)
T PRK06603        157 YNVMGVAKAALEAS  170 (260)
T ss_pred             ccchhhHHHHHHHH
Confidence            35688888866555

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.48  E-value=2.4e-12  Score=89.10  Aligned_cols=130  Identities=15%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchh---hHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKS---QLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      ++++|+||+|++|.+++++|.++|. .|+++.|+.... ....   +.+++ ...++.++.+|+++++++.+++.     
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDA-PGAAELLAELEA-LGAEVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCC-ccHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999996 677787765432 1111   12221 23467789999999988887765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                        .+|.|||+++...                   ..+...+++++.+.+ .++++++||.......+     ....|..+
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~ii~~ss~~~~~~~~-----~~~~y~~s  152 (180)
T smart00822       79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLP-LDFFVLFSSVAGVLGNP-----GQANYAAA  152 (180)
T ss_pred             cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCC-cceEEEEccHHHhcCCC-----CchhhHHH
Confidence              3699999998643                   344667777776665 68899999976543322     24567888


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+.+.+.
T Consensus       153 k~~~~~~~  160 (180)
T smart00822      153 NAFLDALA  160 (180)
T ss_pred             HHHHHHHH
Confidence            87776663

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.47  E-value=2.2e-12  Score=102.86  Aligned_cols=128  Identities=14%  Similarity=0.110  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.++++.|.++|++|+++++...   .+....+...  .+..++.+|++|++++.+++.       +
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~---~~~l~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA---GEALAAVANR--VGGTALALDITAPDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc---HHHHHHHHHH--cCCeEEEEeCCCHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999999987522   2222222111  234678999999998887765       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc---CCccEEEeccccccccCCCccCCccchhhHh
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKEAE---GASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~---~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      +|+|||+||...                   ..++..+.+++....   ..++||++||...+...+     ....|..+
T Consensus       285 id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~-----~~~~Y~as  359 (450)
T PRK08261        285 LDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNR-----GQTNYAAS  359 (450)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC-----CChHHHHH
Confidence            899999999753                   333555555654421   136899999976653222     24578888


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      |...+.+
T Consensus       360 Kaal~~~  366 (450)
T PRK08261        360 KAGVIGL  366 (450)
T ss_pred             HHHHHHH
Confidence            8755554

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.47  E-value=2e-12  Score=95.87  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CCeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||  +++||.++++.|++.|++|++++|+..   ++..+.+.+.....+.++.+|++|++++.++++      
T Consensus         7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~   83 (256)
T PRK07889          7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRA---LRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHV   83 (256)
T ss_pred             CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccc---hhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence            468999999  899999999999999999999887631   222222222222357789999999999887764      


Q ss_pred             -CcCEEEEcCCCc
Q 040431           76 -QVDVVISTVGHT   87 (157)
Q Consensus        76 -~~d~vv~~a~~~   87 (157)
                       ++|++|||||..
T Consensus        84 g~iD~li~nAG~~   96 (256)
T PRK07889         84 DGLDGVVHSIGFA   96 (256)
T ss_pred             CCCcEEEEccccc
Confidence             589999999975

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.46  E-value=1.5e-12  Score=97.47  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=86.7

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  ++||.++++.|++.|++|++..|+...  .++++.+.+.. .....+++|++|+++++++++      
T Consensus        10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~--~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159         10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDAL--KKRVEPLAAEL-GAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHH--HHHHHHHHHhc-CCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            4789999997  899999999999999999887765211  22333332221 235578999999999988765      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       .+|++|||||...                       ..+...+++++... ...++++++||.+.....     +....
T Consensus        87 g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~-----p~~~~  161 (272)
T PRK08159         87 GKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVM-----PHYNV  161 (272)
T ss_pred             CCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCC-----Ccchh
Confidence             4899999998641                       11233333333321 113689999987654322     23456


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+...+
T Consensus       162 Y~asKaal~~l  172 (272)
T PRK08159        162 MGVAKAALEAS  172 (272)
T ss_pred             hhhHHHHHHHH
Confidence            88888876665

>PLN00015 protochlorophyllide reductase

Probab=99.46  E-value=2.5e-12  Score=97.86  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=77.6

Q ss_pred             EEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-------C
Q 040431            8 LFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         8 litGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +||||+++||.+++++|++.| ++|++..|+     .++.+.+ .+..  ...+.++.+|++|.+++.+++.       .
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~   75 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRD-----FLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRP   75 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCC-----HHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            599999999999999999999 999999887     3333322 2221  2357888999999999887764       4


Q ss_pred             cCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcC-CccEEEecccccc
Q 040431           77 VDVVISTVGHTL------------------------LADQVKIIAAIKEAEG-ASRGTLRTQKGKM  117 (157)
Q Consensus        77 ~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~-~~~~v~~Ss~~~~  117 (157)
                      +|++|||||...                        ...++.+++.+.+.+. .++||++||..++
T Consensus        76 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~  141 (308)
T PLN00015         76 LDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGN  141 (308)
T ss_pred             CCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccc
Confidence            899999999742                        1124556666665531 2689999998664

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.46  E-value=4.5e-13  Score=95.98  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .+++++|||.|+||..++++|+++|..+.++..+.++  ++....|+. .+...+.|+++|+++..+++++++       
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En--~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg   82 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN--PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG   82 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC--HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999887777666443  333333333 345679999999999999988876       


Q ss_pred             CcCEEEEcCCCcc---------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           76 QVDVVISTVGHTL---------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        76 ~~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      .+|++||+||...               ++++...++.+.+..  ..+-+|++||+.+..+.+.     .++|..+|.
T Consensus        83 ~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~-----~pVY~AsKa  155 (261)
T KOG4169|consen   83 TIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPV-----FPVYAASKA  155 (261)
T ss_pred             ceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCcccc-----chhhhhccc
Confidence            5899999999987               677888999987764  2467999999776654332     345555554

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.46  E-value=7.9e-13  Score=93.43  Aligned_cols=110  Identities=19%  Similarity=0.220  Sum_probs=78.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhc-------
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +++||||+|.+|..+++.|.+++. +|+++.|+.... ++..+.+.+..  ...+.++.+|++|++++.+++.       
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~-~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~   80 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPS-AEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFG   80 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGS-TTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCcc-HHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccC
Confidence            689999999999999999999985 788888884222 33333444333  4578999999999999999985       


Q ss_pred             CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           76 QVDVVISTVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      .++.|||.|+...                   +.+..++.+++.... ...|+..||+...
T Consensus        81 ~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~-l~~~i~~SSis~~  140 (181)
T PF08659_consen   81 PIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRP-LDFFILFSSISSL  140 (181)
T ss_dssp             -EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT-TSEEEEEEEHHHH
T ss_pred             CcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC-CCeEEEECChhHh
Confidence            4689999999865                   555777888877766 7899999998764

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.45  E-value=2.7e-12  Score=95.60  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh---cCCCeEEEEccCCChHHHH----HHh--
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF---KNLGVNLVIGDVLNHESLV----KAI--   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~---~~~~v~~~~~D~~~~~~~~----~~~--   74 (157)
                      ++++||||+|+||++++++|+++|++|+++.|+.    +++.+.+ +++   ....+.++.+|++|++++.    +++  
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~   77 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRS----AAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDA   77 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCc----HHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHH
Confidence            5799999999999999999999999999887653    2222221 222   2235667899999987553    332  


Q ss_pred             -----cCcCEEEEcCCCc
Q 040431           75 -----KQVDVVISTVGHT   87 (157)
Q Consensus        75 -----~~~d~vv~~a~~~   87 (157)
                           .++|+||||||..
T Consensus        78 ~~~~~g~iD~lv~nAG~~   95 (267)
T TIGR02685        78 CFRAFGRCDVLVNNASAF   95 (267)
T ss_pred             HHHccCCceEEEECCccC
Confidence                 2589999999963

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.45  E-value=3e-12  Score=95.17  Aligned_cols=127  Identities=10%  Similarity=0.046  Sum_probs=85.5

Q ss_pred             CCeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||  +++||.+++++|++.|++|++..|....  .++++.+..... ...++.+|++|++++.++++      
T Consensus         6 ~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (260)
T PRK06997          6 GKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRF--KDRITEFAAEFG-SDLVFPCDVASDEQIDALFASLGQHW   82 (260)
T ss_pred             CcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHH--HHHHHHHHHhcC-CcceeeccCCCHHHHHHHHHHHHHHh
Confidence            478999996  6799999999999999999987664211  233333322112 23468899999999988875      


Q ss_pred             -CcCEEEEcCCCcc----------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 -QVDVVISTVGHTL----------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 -~~d~vv~~a~~~~----------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                       .+|++|||||...                            ...++.+++.+.  + .++++++||.++....     .
T Consensus        83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~--~-~g~Ii~iss~~~~~~~-----~  154 (260)
T PRK06997         83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS--D-DASLLTLSYLGAERVV-----P  154 (260)
T ss_pred             CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC--C-CceEEEEeccccccCC-----C
Confidence             5899999998641                            011333344342  2 3689999987654322     2


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+...+
T Consensus       155 ~~~~Y~asKaal~~l  169 (260)
T PRK06997        155 NYNTMGLAKASLEAS  169 (260)
T ss_pred             CcchHHHHHHHHHHH
Confidence            244688888876665

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.43  E-value=5.5e-12  Score=93.71  Aligned_cols=105  Identities=30%  Similarity=0.421  Sum_probs=83.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+||||||++|++++++|+++|++|++++|+     +++...+.    .++++...|+.++.++...+++.|.+++..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~-----~~~~~~~~----~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~   71 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRN-----PEAAAALA----GGVEVVLGDLRDPKSLVAGAKGVDGVLLIS   71 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeC-----HHHHHhhc----CCcEEEEeccCCHhHHHHHhccccEEEEEe
Confidence            479999999999999999999999999999999     55554443    689999999999999999999999999888


Q ss_pred             CCcc------hHHHHHHHHHHHHhc-CCccEEEeccccccc
Q 040431           85 GHTL------LADQVKIIAAIKEAE-GASRGTLRTQKGKMS  118 (157)
Q Consensus        85 ~~~~------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~  118 (157)
                      +...      ......++...++.+ +..+++++|..++..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~  112 (275)
T COG0702          72 GLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADA  112 (275)
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCC
Confidence            8542      233444555555543 257888888876544

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.42  E-value=1.2e-11  Score=90.98  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=88.6

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC----CCeEEEEccCCC-hHHHHHHhc--
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN----LGVNLVIGDVLN-HESLVKAIK--   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~v~~~~~D~~~-~~~~~~~~~--   75 (157)
                      ++++++||||++++|.++++.|++.|++|+++.+.....   ..+.+.....    ..+.+..+|+++ .+++..+++  
T Consensus         4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~   80 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEE---AAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAA   80 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchh---hHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence            468999999999999999999999999998888874321   2222222222    367888899998 888877765  


Q ss_pred             -----CcCEEEEcCCCc----c----------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 -----QVDVVISTVGHT----L----------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 -----~~d~vv~~a~~~----~----------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                           .+|++|||||..    .                ..+    ++.+.+.+.  . . +|+++||.... ..+..   
T Consensus        81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~--~-~-~Iv~isS~~~~-~~~~~---  152 (251)
T COG1028          81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMK--K-Q-RIVNISSVAGL-GGPPG---  152 (251)
T ss_pred             HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhh--h-C-eEEEECCchhc-CCCCC---
Confidence                 489999999985    2                111    222222233  2 2 89999998766 43332   


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                       ...|..+|.+-..+
T Consensus       153 -~~~Y~~sK~al~~~  166 (251)
T COG1028         153 -QAAYAASKAALIGL  166 (251)
T ss_pred             -cchHHHHHHHHHHH
Confidence             56888888876555

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.42  E-value=7.8e-12  Score=89.19  Aligned_cols=111  Identities=23%  Similarity=0.217  Sum_probs=81.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~vv   81 (157)
                      |+++||||+|++|.++++.|.++ ++|++++|+..                   .+.+|++|+++++++++   ++|++|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~id~lv   60 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEKVGKVDAVV   60 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHhcCCCCEEE
Confidence            47999999999999999999999 99999988721                   36789999999988876   689999


Q ss_pred             EcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCccCCccchhhHhHhhhhH
Q 040431           82 STVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQK  140 (157)
Q Consensus        82 ~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (157)
                      |+||...                   ..++.++.+++...  + ..+|+++||..+....     .....|..+|.+.+.
T Consensus        61 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~g~iv~iss~~~~~~~-----~~~~~Y~~sK~a~~~  134 (199)
T PRK07578         61 SAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND-GGSFTLTSGILSDEPI-----PGGASAATVNGALEG  134 (199)
T ss_pred             ECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcccccCCCC-----CCchHHHHHHHHHHH
Confidence            9999743                   11233444443321  2 3579999986654322     234578888887666


Q ss_pred             H
Q 040431          141 I  141 (157)
Q Consensus       141 ~  141 (157)
                      +
T Consensus       135 ~  135 (199)
T PRK07578        135 F  135 (199)
T ss_pred             H
Confidence            5

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.41  E-value=7.7e-12  Score=93.59  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .+.++||||+.+||+++|+.|.+.|.+|++.+|+.+..+....+..... ...++..+.+|+++.++.++++.       
T Consensus         8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~~   87 (270)
T KOG0725|consen    8 GKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKFF   87 (270)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999443211111111111 13468899999998887777654       


Q ss_pred             -CcCEEEEcCCCcc--------------------hH-----HHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 -QVDVVISTVGHTL--------------------LA-----DQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 -~~d~vv~~a~~~~--------------------~~-----~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                       ++|++|||||...                    ..     ..+.+...+.+.+ ...++++||.+.+......   + .
T Consensus        88 GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~-gg~I~~~ss~~~~~~~~~~---~-~  162 (270)
T KOG0725|consen   88 GKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSK-GGSIVNISSVAGVGPGPGS---G-V  162 (270)
T ss_pred             CCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcC-CceEEEEeccccccCCCCC---c-c
Confidence             5999999999976                    11     1222333344444 5789999987666432111   1 4


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+...+
T Consensus       163 ~Y~~sK~al~~l  174 (270)
T KOG0725|consen  163 AYGVSKAALLQL  174 (270)
T ss_pred             cchhHHHHHHHH
Confidence            566666644333

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.36  E-value=1.2e-11  Score=87.18  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hc-CCCeEEEEccCCChHHHHHHhc-------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FK-NLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~-~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      |+++||||||++|. +++.|.+.|++|++++|+     +++.+.+.. .. ..++.++.+|+.|++++.++++       
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~-----~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g   74 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARR-----EVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNG   74 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECC-----HHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            47999999987765 999999999999999987     444443322 21 2468889999999999988875       


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHHHhcCCc----cEEEec
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIKEAEGAS----RGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~----~~v~~S  112 (157)
                      .+|.+|+.+...   ...++..+|++.+ +.    +|+++=
T Consensus        75 ~id~lv~~vh~~---~~~~~~~~~~~~g-v~~~~~~~~h~~  111 (177)
T PRK08309         75 PFDLAVAWIHSS---AKDALSVVCRELD-GSSETYRLFHVL  111 (177)
T ss_pred             CCeEEEEecccc---chhhHHHHHHHHc-cCCCCceEEEEe
Confidence            478888887776   4888999999998 77    788874

>PRK06720 hypothetical protein; Provisional

Probab=99.35  E-value=3.8e-11  Score=84.00  Aligned_cols=83  Identities=16%  Similarity=0.140  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+++||.++++.|.+.|++|++++|+.... .+..+.+.. ......++.+|+++.+++.+++.       +
T Consensus        16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~-~~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESG-QATVEEITN-LGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999873211 111112221 13356788999999988887653       5


Q ss_pred             cCEEEEcCCCcc
Q 040431           77 VDVVISTVGHTL   88 (157)
Q Consensus        77 ~d~vv~~a~~~~   88 (157)
                      +|++|||||...
T Consensus        94 iDilVnnAG~~~  105 (169)
T PRK06720         94 IDMLFQNAGLYK  105 (169)
T ss_pred             CCEEEECCCcCC
Confidence            899999999755

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=6.1e-12  Score=91.46  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=96.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc----CCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK----NLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      +..||||-||.-|+.|++.|+++|++|..+.|.++..+..+++.+...+    ......+.+|++|...+.+++.  +++
T Consensus        29 kvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikPt  108 (376)
T KOG1372|consen   29 KVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKPT  108 (376)
T ss_pred             eEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCch
Confidence            3579999999999999999999999999999999988888888775432    3467889999999999999987  688


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcC--CccEEEeccccccccC
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEG--ASRGTLRTQKGKMSSL  120 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~--~~~~v~~Ss~~~~~~~  120 (157)
                      -|+|+|+...               -.++.+++++.+.++-  .-+|...|+..-|+..
T Consensus       109 EiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv  167 (376)
T KOG1372|consen  109 EVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKV  167 (376)
T ss_pred             hhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccc
Confidence            9999999877               4458899999988861  2367777777777744

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=99.34  E-value=1.5e-11  Score=95.53  Aligned_cols=91  Identities=23%  Similarity=0.291  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ||+|+|.|+ |++|+.++..|+++| .+|++.+|+     .+++.........+++++++|+.|.+.+.+++++.|+|||
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs-----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRS-----KEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCC-----HHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEE
Confidence            568999997 999999999999999 899999999     7777666555556899999999999999999999999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhc
Q 040431           83 TVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ++.++.   ...++++|.+.|
T Consensus        75 ~~p~~~---~~~i~ka~i~~g   92 (389)
T COG1748          75 AAPPFV---DLTILKACIKTG   92 (389)
T ss_pred             eCCchh---hHHHHHHHHHhC
Confidence            999974   668999999998

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.34  E-value=5.2e-11  Score=90.55  Aligned_cols=130  Identities=8%  Similarity=-0.035  Sum_probs=81.4

Q ss_pred             CCeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecCCCCCCCch-------hhHhhhhcC----CCeEEEEccC--CChH
Q 040431            4 KSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRESTISGPSK-------SQLLDHFKN----LGVNLVIGDV--LNHE   68 (157)
Q Consensus         4 ~~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~-------~~~~~~~~~----~~v~~~~~D~--~~~~   68 (157)
                      .++++||||  +.+||.++++.|.+.|++|++ .|.....+...       .+.......    .....+.+|+  .+++
T Consensus         9 gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~   87 (303)
T PLN02730          9 GKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDTPE   87 (303)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCccc
Confidence            578999999  899999999999999999988 56522210000       000000111    1135678888  3333


Q ss_pred             ------------------HHHHHhc-------CcCEEEEcCCCcc-------------------------hHHHHHHHHH
Q 040431           69 ------------------SLVKAIK-------QVDVVISTVGHTL-------------------------LADQVKIIAA   98 (157)
Q Consensus        69 ------------------~~~~~~~-------~~d~vv~~a~~~~-------------------------~~~~~~l~~~   98 (157)
                                        ++.+++.       ++|++|||||...                         ...++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~p~  167 (303)
T PLN02730         88 DVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFGPI  167 (303)
T ss_pred             cCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              5665554       5899999996421                         2225556666


Q ss_pred             HHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431           99 IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        99 ~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      +.+.   +++|++||..+....+.    ....|..+|.+-+.+
T Consensus       168 m~~~---G~II~isS~a~~~~~p~----~~~~Y~asKaAl~~l  203 (303)
T PLN02730        168 MNPG---GASISLTYIASERIIPG----YGGGMSSAKAALESD  203 (303)
T ss_pred             HhcC---CEEEEEechhhcCCCCC----CchhhHHHHHHHHHH
Confidence            6543   58999999766543211    123688888877666

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.32  E-value=1.2e-11  Score=92.42  Aligned_cols=120  Identities=15%  Similarity=0.174  Sum_probs=90.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhcCCCeEEEEccCCChHH----HHHHhc--
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFKNLGVNLVIGDVLNHES----LVKAIK--   75 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~~----~~~~~~--   75 (157)
                      =.+|||||.+||++.++.|+++|.+|++++|+     .+|++..+    +-....+.++..|+++.++    +++.+.  
T Consensus        51 WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt-----~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~  125 (312)
T KOG1014|consen   51 WAVVTGATDGIGKAYARELAKRGFNVVLISRT-----QEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGL  125 (312)
T ss_pred             EEEEECCCCcchHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCC
Confidence            36899999999999999999999999999999     66665443    3334678899999987665    444444  


Q ss_pred             CcCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 QVDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                      ++.++|||+|...                         ..-++.++..|.+.+ .+-|+++||.++....|     ....
T Consensus       126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~-~G~IvnigS~ag~~p~p-----~~s~  199 (312)
T KOG1014|consen  126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERK-KGIIVNIGSFAGLIPTP-----LLSV  199 (312)
T ss_pred             ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCC-CceEEEeccccccccCh-----hHHH
Confidence            4668999999976                         223777888888877 78999999976654332     2445


Q ss_pred             hhHhHh
Q 040431          131 LEMTEL  136 (157)
Q Consensus       131 ~~~~~~  136 (157)
                      |..+|.
T Consensus       200 ysasK~  205 (312)
T KOG1014|consen  200 YSASKA  205 (312)
T ss_pred             HHHHHH
Confidence            666655

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.28  E-value=6.9e-11  Score=81.93  Aligned_cols=106  Identities=20%  Similarity=0.196  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +|..+|.||||-+|+.+.+++++.+  .+|+++.|..... +        .....+.....|.+..+++...++++|+.|
T Consensus        18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d-~--------at~k~v~q~~vDf~Kl~~~a~~~qg~dV~F   88 (238)
T KOG4039|consen   18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD-P--------ATDKVVAQVEVDFSKLSQLATNEQGPDVLF   88 (238)
T ss_pred             ccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC-c--------cccceeeeEEechHHHHHHHhhhcCCceEE
Confidence            7889999999999999999999998  4899998884221 1        124567778899999999999999999999


Q ss_pred             EcCCCcc------------hHHHHHHHHHHHHhcCCccEEEecccccccc
Q 040431           82 STVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSS  119 (157)
Q Consensus        82 ~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~  119 (157)
                      ++.|...            .....++.+++++.| +++|+.+||.++-.+
T Consensus        89 caLgTTRgkaGadgfykvDhDyvl~~A~~AKe~G-ck~fvLvSS~GAd~s  137 (238)
T KOG4039|consen   89 CALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKG-CKTFVLVSSAGADPS  137 (238)
T ss_pred             EeecccccccccCceEeechHHHHHHHHHHHhCC-CeEEEEEeccCCCcc
Confidence            9988865            344667788888888 899999999988544

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.27  E-value=1.1e-10  Score=82.19  Aligned_cols=110  Identities=14%  Similarity=0.081  Sum_probs=79.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .+..+||||+.+||++++..|.++|++|.+.++++... .+.+..+...  .+-....+|+++++++...++       .
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A-~ata~~L~g~--~~h~aF~~DVS~a~~v~~~l~e~~k~~g~   90 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAA-EATAGDLGGY--GDHSAFSCDVSKAHDVQNTLEEMEKSLGT   90 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhH-HHHHhhcCCC--CccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999999999985532 2222222211  245668999999888777654       5


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcC-CccEEEeccccc
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEG-ASRGTLRTQKGK  116 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~-~~~~v~~Ss~~~  116 (157)
                      ++++||+||+..                       .-.++...+++...++ ...||++||+-.
T Consensus        91 psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVG  154 (256)
T KOG1200|consen   91 PSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVG  154 (256)
T ss_pred             CcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhc
Confidence            899999999987                       2225555666433332 238999999654

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.24  E-value=9.4e-11  Score=81.18  Aligned_cols=125  Identities=16%  Similarity=0.142  Sum_probs=93.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .+.|++||+.-+||++++..|.+.|.+|+++.|+     ++.+..+-.....-++.+++|+++.+.+.+.+.   ..|.+
T Consensus         7 G~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~-----~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgL   81 (245)
T KOG1207|consen    7 GVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARN-----EANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGL   81 (245)
T ss_pred             ceEEEeecccccccHHHHHHHHhcCCEEEEEecC-----HHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhh
Confidence            4689999999999999999999999999999999     666655544445558999999999988888876   48999


Q ss_pred             EEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      +||||...                       +..++.+.+-+......+.|+++||.........     .+.|..+|.+
T Consensus        82 VNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~n-----HtvYcatKaA  156 (245)
T KOG1207|consen   82 VNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDN-----HTVYCATKAA  156 (245)
T ss_pred             hccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCC-----ceEEeecHHH
Confidence            99999865                       2223444444444443467999999776554332     4456666654


Q ss_pred             h
Q 040431          138 D  138 (157)
Q Consensus       138 ~  138 (157)
                      -
T Consensus       157 L  157 (245)
T KOG1207|consen  157 L  157 (245)
T ss_pred             H
Confidence            3

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.15  E-value=6.4e-10  Score=87.99  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---CcEEEEecCCCCCCC-chhhHh---------hhh---cCCCeEEEEccCCCh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---HPTFVLVRESTISGP-SKSQLL---------DHF---KNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~-~~~~~~---------~~~---~~~~v~~~~~D~~~~   67 (157)
                      .++|+|||||||+|+-+++.|+..-   .+|+.+-|.+.+... +++..+         .+.   .-..+..+.+|+.++
T Consensus        12 ~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~~   91 (467)
T KOG1221|consen   12 NKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISEP   91 (467)
T ss_pred             CCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccCc
Confidence            5789999999999999999999875   368888888765422 222211         111   114678889999743


Q ss_pred             ------HHHHHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           68 ------ESLVKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        68 ------~~~~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                            .++..+.+.+|+|||.|+...            ..+++++++.+++..+.+.++++|+..+.
T Consensus        92 ~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n  159 (467)
T KOG1221|consen   92 DLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN  159 (467)
T ss_pred             ccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee
Confidence                  455556778999999999976            67799999999998767899999996554

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=8.7e-10  Score=85.99  Aligned_cols=111  Identities=27%  Similarity=0.396  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hh-hhcCCCeEEEEccCCChHHHHH-Hhc---
Q 040431            2 ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LD-HFKNLGVNLVIGDVLNHESLVK-AIK---   75 (157)
Q Consensus         2 ~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~-~~~~~~v~~~~~D~~~~~~~~~-~~~---   75 (157)
                      .++++|+|+||||.+|+-+++.|++.|+.|+++.|+.     ++... +. ...+.....+..|...+.+... +..   
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~-----~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~  151 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDE-----QKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVP  151 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccCh-----hhhhhhhcccccccccceeeeccccccchhhhhhhhcc
Confidence            3467999999999999999999999999999999994     33332 22 1223445556666655444333 332   


Q ss_pred             -CcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           76 -QVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                       ...+++-+++...            ..++++++++|...| ++|++++|+++...
T Consensus       152 ~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aG-vk~~vlv~si~~~~  206 (411)
T KOG1203|consen  152 KGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAG-VKRVVLVGSIGGTK  206 (411)
T ss_pred             ccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhC-CceEEEEEeecCcc
Confidence             2235555544432            677999999999999 99999999876653

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.14  E-value=8.4e-10  Score=101.91  Aligned_cols=132  Identities=17%  Similarity=0.119  Sum_probs=94.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCC----------------------------------------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISG----------------------------------------   42 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~----------------------------------------   42 (157)
                      .++++||||+++||.+++++|+++ |++|++++|+....+                                        
T Consensus      1997 g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~~ 2076 (2582)
T TIGR02813      1997 DDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRPV 2076 (2582)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccccc
Confidence            468999999999999999999998 699999999831100                                        


Q ss_pred             ---CchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc------CcCEEEEcCCCcc-------------------hHHH
Q 040431           43 ---PSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK------QVDVVISTVGHTL-------------------LADQ   92 (157)
Q Consensus        43 ---~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~------~~d~vv~~a~~~~-------------------~~~~   92 (157)
                         .+..+.++..  ....+.++.+|++|.+++.+++.      ++|+|||+||...                   +.+.
T Consensus      2077 ~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G~ 2156 (2582)
T TIGR02813      2077 LSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDGL 2156 (2582)
T ss_pred             chhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHHH
Confidence               0000111211  13467889999999999988875      4899999999854                   5567


Q ss_pred             HHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431           93 VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        93 ~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      .++++++.... .++||++||+.++...+     ....|..+|.+-.++
T Consensus      2157 ~~Ll~al~~~~-~~~IV~~SSvag~~G~~-----gqs~YaaAkaaL~~l 2199 (2582)
T TIGR02813      2157 LSLLAALNAEN-IKLLALFSSAAGFYGNT-----GQSDYAMSNDILNKA 2199 (2582)
T ss_pred             HHHHHHHHHhC-CCeEEEEechhhcCCCC-----CcHHHHHHHHHHHHH
Confidence            78888887765 67899999987653322     234677777665544

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.13  E-value=1.5e-09  Score=79.35  Aligned_cols=84  Identities=19%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-----EEEEecCCCCCCCchhhHhhhhcC---CCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-----TFVLVRESTISGPSKSQLLDHFKN---LGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-----v~~~~r~~~~~~~~~~~~~~~~~~---~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .+.++|||+++++|.++|.+|++...+     ++...|+-+.. ++-+..++++.+   ..++++.+|+++..++..+.+
T Consensus         3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~ka-e~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKA-EAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHH-HHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            356799999999999999999998643     55566774443 333444555543   367889999999887776643


Q ss_pred             -------CcCEEEEcCCCcc
Q 040431           76 -------QVDVVISTVGHTL   88 (157)
Q Consensus        76 -------~~d~vv~~a~~~~   88 (157)
                             ..|.|+-|||++.
T Consensus        82 di~~rf~~ld~iylNAg~~~  101 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMP  101 (341)
T ss_pred             HHHHHhhhccEEEEccccCC
Confidence                   6899999999986

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=99.12  E-value=7.8e-10  Score=86.69  Aligned_cols=94  Identities=28%  Similarity=0.265  Sum_probs=74.4

Q ss_pred             EEEEcCCCcchHHHHHHHHhCC-C-cEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            7 ILFIGGTGYIGKFTVEASVKAG-H-PTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g-~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      |+|.|| |++|+.+++.|.+.+ . +|++.+|+     .++++.+.+. ...++..+++|+.|.+++.+++++.|+|||+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~   74 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRN-----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC   74 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESS-----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECC-----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence            789999 999999999999987 3 89999999     7776655432 5678999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +++.   ....++++|.+.|  .+++-+
T Consensus        75 ~gp~---~~~~v~~~~i~~g--~~yvD~   97 (386)
T PF03435_consen   75 AGPF---FGEPVARACIEAG--VHYVDT   97 (386)
T ss_dssp             SSGG---GHHHHHHHHHHHT---EEEES
T ss_pred             Cccc---hhHHHHHHHHHhC--CCeecc
Confidence            9997   4678999999997  355553

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.09  E-value=2.5e-09  Score=78.48  Aligned_cols=116  Identities=13%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             cCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCch----hhHhhhhcCCCeEEEEccCCChHHHHHHhc--------C
Q 040431           11 GGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSK----SQLLDHFKNLGVNLVIGDVLNHESLVKAIK--------Q   76 (157)
Q Consensus        11 Gat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~----~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--------~   76 (157)
                      |++  ++||.+++++|+++|++|++++|+     .++    ++.+....  +..++.+|++|++++.+++.        +
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~-----~~~~~~~~~~l~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~g~   73 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRN-----EEKLADALEELAKEY--GAEVIQCDLSDEESVEALFDEAVERFGGR   73 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESS-----HHHHHHHHHHHHHHT--TSEEEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCC-----hHHHHHHHHHHHHHc--CCceEeecCcchHHHHHHHHHHHhhcCCC
Confidence            566  999999999999999999999999     444    22232222  24469999999999888854        5


Q ss_pred             cCEEEEcCCCcc---------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           77 VDVVISTVGHTL---------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        77 ~d~vv~~a~~~~---------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                      +|++||+++...                           ....+.+.+.+.+.   +.+|++||.......     ....
T Consensus        74 iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---gsii~iss~~~~~~~-----~~~~  145 (241)
T PF13561_consen   74 IDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG---GSIINISSIAAQRPM-----PGYS  145 (241)
T ss_dssp             ESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE---EEEEEEEEGGGTSBS-----TTTH
T ss_pred             eEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCcccccchhhcccC-----ccch
Confidence            899999998754                           11144555544443   479999987654432     2334


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+-+.+
T Consensus       146 ~y~~sKaal~~l  157 (241)
T PF13561_consen  146 AYSASKAALEGL  157 (241)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            788888876655

...

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.09  E-value=1.5e-09  Score=81.37  Aligned_cols=108  Identities=20%  Similarity=0.222  Sum_probs=80.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh----cCCCeEEEEccCCChHHHHHHhc----
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF----KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~----~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      ++|+||||+.++|..++..+..+|++|+++.|+     ..++..++ ++    ....+.+..+|+.|.+++...++    
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~-----~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~  108 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARS-----GKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRD  108 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEecc-----HHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhh
Confidence            589999999999999999999999999999999     55544322 11    11236788999999988888775    


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                         .+|.+||+||..-                       .+..+..+.++++..-.++|+.+||..+.
T Consensus       109 ~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~  176 (331)
T KOG1210|consen  109 LEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM  176 (331)
T ss_pred             ccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh
Confidence               4799999999864                       33345555555555323489999886654

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=99.06  E-value=2.2e-09  Score=79.66  Aligned_cols=96  Identities=18%  Similarity=0.166  Sum_probs=76.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+|+|+||||. |+.+++.|.+.|++|++.++.....     +.+   ...+...+..+..|.+++.+.++  ++|+||+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~-----~~~---~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VID   71 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGK-----HLY---PIHQALTVHTGALDPQELREFLKRHSIDILVD   71 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcc-----ccc---cccCCceEEECCCCHHHHHHHHHhcCCCEEEE
Confidence            47999999999 9999999999999999999885432     111   11223345566778888988887  5999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      .+.++....+.++.++|.+.+ ++.+=|
T Consensus        72 AtHPfA~~is~~a~~a~~~~~-ipylR~   98 (256)
T TIGR00715        72 ATHPFAAQITTNATAVCKELG-IPYVRF   98 (256)
T ss_pred             cCCHHHHHHHHHHHHHHHHhC-CcEEEE
Confidence            999999999999999999998 654433

This enzyme was found to be a monomer by gel filtration.

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.01  E-value=4.6e-09  Score=79.83  Aligned_cols=34  Identities=18%  Similarity=-0.007  Sum_probs=30.2

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++++||||+  .+||+++++.|.+.|++|++.++.
T Consensus         8 gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~   43 (299)
T PRK06300          8 GKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWV   43 (299)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEecc
Confidence            5789999995  899999999999999999987653

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.93  E-value=1.4e-08  Score=77.78  Aligned_cols=136  Identities=14%  Similarity=0.079  Sum_probs=89.9

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +|+||+|+|++|.||+.++..|...+  .+++.+++....  .+..+ +.+.. .  .....+.+|+.++.+.++++|+|
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~--g~a~D-l~~~~-~--~~~v~~~td~~~~~~~l~gaDvV   80 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP--GVAAD-LSHID-T--PAKVTGYADGELWEKALRGADLV   80 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc--ccccc-hhhcC-c--CceEEEecCCCchHHHhCCCCEE
Confidence            37799999999999999999998665  689999883211  11111 11111 1  23344556655566788999999


Q ss_pred             EEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccC--------CCccCCccchhhHhHhhhh
Q 040431           81 ISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL--------SSEMTTTLDMLEMTELIDQ  139 (157)
Q Consensus        81 v~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~--------~~~~~~~~~~~~~~~~~~~  139 (157)
                      |+.+|...             ....+++++++.+.+ ..++++++|..+..-.        ...-.++..+++.+. .+.
T Consensus        81 VitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~-LDs  158 (321)
T PTZ00325         81 LICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTT-LDV  158 (321)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechh-HHH
Confidence            99999955             335888999999998 8999999987653211        111145666666653 444


Q ss_pred             HHHHHHH
Q 040431          140 KIFIYFW  146 (157)
Q Consensus       140 ~~~~~~~  146 (157)
                      ..+..+.
T Consensus       159 ~R~r~~l  165 (321)
T PTZ00325        159 VRARKFV  165 (321)
T ss_pred             HHHHHHH
Confidence            4434443

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.90  E-value=4.5e-09  Score=80.01  Aligned_cols=93  Identities=27%  Similarity=0.364  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHh----CCCcEEEEecCCCCCCCchhhH-hhh---hcC---CCeEEEEccCCChHHHHHH
Q 040431            5 SKILFIGGTGYIGKFTVEASVK----AGHPTFVLVRESTISGPSKSQL-LDH---FKN---LGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~----~g~~v~~~~r~~~~~~~~~~~~-~~~---~~~---~~v~~~~~D~~~~~~~~~~   73 (157)
                      -.++|.|||||.|..+++.+++    .+..+-+..|+     +++++. |++   -..   .+..++.+|..|++++.++
T Consensus         6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn-----~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~em   80 (423)
T KOG2733|consen    6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRN-----EKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEM   80 (423)
T ss_pred             eeEEEEccccccceeeHHHHhhhhcccCceEEEecCC-----HHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHH
Confidence            4799999999999999999999    56788888898     555542 221   111   2233889999999999999


Q ss_pred             hcCcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           74 IKQVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        74 ~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .+++.+|+|++|+....+ ..++++|.+.|
T Consensus        81 ak~~~vivN~vGPyR~hG-E~VVkacienG  109 (423)
T KOG2733|consen   81 AKQARVIVNCVGPYRFHG-EPVVKACIENG  109 (423)
T ss_pred             HhhhEEEEeccccceecC-cHHHHHHHHcC
Confidence            999999999999987443 45666666655

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.86  E-value=1.8e-08  Score=71.86  Aligned_cols=80  Identities=19%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hc-CCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FK-NLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~-~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++|+||+|.+|+.+++.|.+.|++|++++|+     .++.+.+.+ .. ..+.....+|..+.+++.+.++++|+||
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD-----LERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            4789999999999999999999999999999988     555543332 21 1245566778889999999999999999


Q ss_pred             EcCCCcc
Q 040431           82 STVGHTL   88 (157)
Q Consensus        82 ~~a~~~~   88 (157)
                      +..+...
T Consensus       103 ~at~~g~  109 (194)
T cd01078         103 AAGAAGV  109 (194)
T ss_pred             ECCCCCc
Confidence            9777654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09620 hypothetical protein; Provisional

Probab=98.84  E-value=1.5e-08  Score=74.20  Aligned_cols=80  Identities=21%  Similarity=0.265  Sum_probs=56.0

Q ss_pred             CCeEEEEcCC----------------CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh
Q 040431            4 KSKILFIGGT----------------GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGat----------------G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   67 (157)
                      .++|+||+|.                ||+|+++|++|++.|++|+++++..... +...     .....+..+..+....
T Consensus         3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~-~~~~-----~~~~~~~~V~s~~d~~   76 (229)
T PRK09620          3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEK-PNDI-----NNQLELHPFEGIIDLQ   76 (229)
T ss_pred             CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCC-Cccc-----CCceeEEEEecHHHHH
Confidence            7899999885                9999999999999999999987653221 1100     0012233445533334


Q ss_pred             HHHHHHhc--CcCEEEEcCCCcch
Q 040431           68 ESLVKAIK--QVDVVISTVGHTLL   89 (157)
Q Consensus        68 ~~~~~~~~--~~d~vv~~a~~~~~   89 (157)
                      +.+.+++.  ++|+|||+|+....
T Consensus        77 ~~l~~~~~~~~~D~VIH~AAvsD~  100 (229)
T PRK09620         77 DKMKSIITHEKVDAVIMAAAGSDW  100 (229)
T ss_pred             HHHHHHhcccCCCEEEECccccce
Confidence            67777774  68999999999763

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=98.84  E-value=4.3e-08  Score=72.03  Aligned_cols=110  Identities=8%  Similarity=-0.043  Sum_probs=76.5

Q ss_pred             HHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----CcCEEEEcCCCcc-------
Q 040431           20 TVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----QVDVVISTVGHTL-------   88 (157)
Q Consensus        20 l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----~~d~vv~~a~~~~-------   88 (157)
                      ++++|++.|++|++++|+..     +.+        ...++++|++|.+++.++++    ++|+||||||...       
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~-----~~~--------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~~~~~~~   67 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREP-----GMT--------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGTAPVELV   67 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcc-----hhh--------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCCCCHHHh
Confidence            47899999999999999843     221        13467899999999998886    5899999999753       


Q ss_pred             ----hHHHHHHHHHHHHh-cCCccEEEeccccccccCCC----------------------ccCCccchhhHhHhhhhHH
Q 040431           89 ----LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSS----------------------EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        89 ----~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  141 (157)
                          ..++..+++++... ...++||++||..++...+.                      ........|..+|.+.+.+
T Consensus        68 ~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~  147 (241)
T PRK12428         68 ARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALILW  147 (241)
T ss_pred             hhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHHH
Confidence                34455566665543 11368999999888752110                      0123456899999887665


Q ss_pred             H
Q 040431          142 F  142 (157)
Q Consensus       142 ~  142 (157)
                      .
T Consensus       148 ~  148 (241)
T PRK12428        148 T  148 (241)
T ss_pred             H
Confidence            3

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.82  E-value=3.3e-08  Score=76.94  Aligned_cols=84  Identities=24%  Similarity=0.248  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCcchHH--HHHHHHhCCCcEEEEecCCCCCC----------CchhhHhhhhcCCCeEEEEccCCChHHHH
Q 040431            4 KSKILFIGGTGYIGKF--TVEASVKAGHPTFVLVRESTISG----------PSKSQLLDHFKNLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~--l~~~l~~~g~~v~~~~r~~~~~~----------~~~~~~~~~~~~~~v~~~~~D~~~~~~~~   71 (157)
                      .+++|||||++++|.+  ++++| ..|++|+++++......          .+..+...+.....+..+.+|+++++++.
T Consensus        41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~  119 (398)
T PRK13656         41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQ  119 (398)
T ss_pred             CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence            3789999999999999  89999 99999988886432110          01122111122334677899999998888


Q ss_pred             HHhc-------CcCEEEEcCCCcc
Q 040431           72 KAIK-------QVDVVISTVGHTL   88 (157)
Q Consensus        72 ~~~~-------~~d~vv~~a~~~~   88 (157)
                      ++++       ++|++||+++...
T Consensus       120 ~lie~I~e~~G~IDiLVnSaA~~~  143 (398)
T PRK13656        120 KVIELIKQDLGQVDLVVYSLASPR  143 (398)
T ss_pred             HHHHHHHHhcCCCCEEEECCccCC
Confidence            7765       5899999999983

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1e-08  Score=73.89  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=73.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--c-EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--P-TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~-v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      +++|+|||++|.+|+++.+-+.+.|.  + -+..+..                       .+|+++..+.++++.  ++.
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk-----------------------d~DLt~~a~t~~lF~~ekPt   57 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK-----------------------DADLTNLADTRALFESEKPT   57 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc-----------------------cccccchHHHHHHHhccCCc
Confidence            46899999999999999999999876  2 2222221                       368899999999987  688


Q ss_pred             EEEEcCCCcc----------------hHHHHHHHHHHHHhcCCccEEEecccccccc
Q 040431           79 VVISTVGHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSS  119 (157)
Q Consensus        79 ~vv~~a~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~  119 (157)
                      .|||.|+-.+                ....-+++..+.+.| ++++++..|...|.+
T Consensus        58 hVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~g-v~K~vsclStCIfPd  113 (315)
T KOG1431|consen   58 HVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHG-VKKVVSCLSTCIFPD  113 (315)
T ss_pred             eeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhc-hhhhhhhcceeecCC
Confidence            9999887654                333668999999999 899999999888764

>PLN00106 malate dehydrogenase

Probab=98.81  E-value=4.3e-08  Score=75.15  Aligned_cols=136  Identities=13%  Similarity=0.063  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +.||+|+|++|.+|..++..|...+  .++++++++.  ...+..+    +.+........++.+.+++.+.++++|+||
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~D----l~~~~~~~~i~~~~~~~d~~~~l~~aDiVV   91 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAAD----VSHINTPAQVRGFLGDDQLGDALKGADLVI   91 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEch----hhhCCcCceEEEEeCCCCHHHHcCCCCEEE
Confidence            4689999999999999999998766  4799999875  1121111    111111223335445556778899999999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccc---cC-----CCccCCccchhhHhHhhhhH
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMS---SL-----SSEMTTTLDMLEMTELIDQK  140 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~  140 (157)
                      +.||...             ....+++.+.+.+.+ ...+++++|--+-.   -.     ...-.++...++.+++....
T Consensus        92 itAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~R  170 (323)
T PLN00106         92 IPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVR  170 (323)
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHH
Confidence            9999855             455888899999998 77888887744321   00     11114556677776543323


Q ss_pred             HHHHHHh
Q 040431          141 IFIYFWG  147 (157)
Q Consensus       141 ~~~~~~~  147 (157)
                      + ..+++
T Consensus       171 l-~~~lA  176 (323)
T PLN00106        171 A-NTFVA  176 (323)
T ss_pred             H-HHHHH
Confidence            2 44444

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.80  E-value=2.4e-08  Score=73.09  Aligned_cols=68  Identities=21%  Similarity=0.330  Sum_probs=48.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC--hHHHHHHhcCcCEEEEcCCCcc
Q 040431           12 GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN--HESLVKAIKQVDVVISTVGHTL   88 (157)
Q Consensus        12 atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~~~~~~~d~vv~~a~~~~   88 (157)
                      +||++|.+++++|++.|++|+++.|.....         .....++.++.++..+  .+.+.+.+.++|+|||+||...
T Consensus        24 SSG~iG~aLA~~L~~~G~~V~li~r~~~~~---------~~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         24 STGQLGKIIAETFLAAGHEVTLVTTKTAVK---------PEPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             cchHHHHHHHHHHHhCCCEEEEEECccccc---------CCCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            479999999999999999999998763211         0012356666544322  2456666778999999999975

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=98.74  E-value=4.6e-08  Score=71.08  Aligned_cols=126  Identities=12%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEe-cCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLV-RESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~   79 (157)
                      ..+|+||||-|.+|..++..|-.. |.+-++++ -...   ++.      . -.+-.++..|+.|...+++++-  .+|.
T Consensus        44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KP---p~~------V-~~~GPyIy~DILD~K~L~eIVVn~RIdW  113 (366)
T KOG2774|consen   44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKP---PAN------V-TDVGPYIYLDILDQKSLEEIVVNKRIDW  113 (366)
T ss_pred             CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCC---chh------h-cccCCchhhhhhccccHHHhhcccccce
Confidence            468999999999999999998665 66655443 2111   110      1 1123567899999999999985  6999


Q ss_pred             EEEcCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------CCccchhhHhHhhh
Q 040431           80 VISTVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------TTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------~~~~~~~~~~~~~~  138 (157)
                      +||+.+...              +.+..++++.+.+.+  -++..-|++++++..++..       +.|...|+.+|...
T Consensus       114 L~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~k--L~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVHA  191 (366)
T KOG2774|consen  114 LVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHK--LKVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHA  191 (366)
T ss_pred             eeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcC--eeEeecccccccCCCCCCCCCCCeeeecCceeechhHHHH
Confidence            999765432              888999999999987  3566678899987654332       67889999999877


Q ss_pred             hHH
Q 040431          139 QKI  141 (157)
Q Consensus       139 ~~~  141 (157)
                      |.+
T Consensus       192 EL~  194 (366)
T KOG2774|consen  192 ELL  194 (366)
T ss_pred             HHH
Confidence            655

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.71  E-value=1.1e-07  Score=73.01  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-------CcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-------HPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-------~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      +.||+||||+|++|++++..|+..+       .+|+.++++...   ++++-. .++.+.. .....|+....++.+.++
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~---~~~~g~~~Dl~d~~-~~~~~~~~~~~~~~~~l~   77 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL---KALEGVVMELQDCA-FPLLKSVVATTDPEEAFK   77 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc---ccccceeeehhhcc-ccccCCceecCCHHHHhC
Confidence            5689999999999999999998854       489999986431   111100 0111100 011234444566777889


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc-CCccEEEec
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAE-GASRGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~-~~~~~v~~S  112 (157)
                      ++|+|||.||...             ....+.+.+.+.+.. ....++.+|
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG  128 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9999999999965             222355666666663 123444444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.4e-07  Score=71.43  Aligned_cols=77  Identities=21%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      ..++|.|||||.|..++++|..+|.+-.+-.|+     .++++.+.....++.  -..++-+++.+.+++.+.++|+|++
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs-----~~kl~~l~~~LG~~~--~~~p~~~p~~~~~~~~~~~VVlncv   79 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRS-----SAKLDALRASLGPEA--AVFPLGVPAALEAMASRTQVVLNCV   79 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCC-----HHHHHHHHHhcCccc--cccCCCCHHHHHHHHhcceEEEecc
Confidence            589999999999999999999999988888888     777776544434333  3444455899999999999999999


Q ss_pred             CCcc
Q 040431           85 GHTL   88 (157)
Q Consensus        85 ~~~~   88 (157)
                      |+..
T Consensus        80 GPyt   83 (382)
T COG3268          80 GPYT   83 (382)
T ss_pred             cccc
Confidence            9986

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.59  E-value=2.2e-07  Score=73.15  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             CCeEEEEcC----------------CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh
Q 040431            4 KSKILFIGG----------------TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGa----------------tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   67 (157)
                      .++++||||                +|.+|.+++++|.+.|++|++++++....           ...+  +..+|+++.
T Consensus       188 gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~-----------~~~~--~~~~dv~~~  254 (399)
T PRK05579        188 GKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP-----------TPAG--VKRIDVESA  254 (399)
T ss_pred             CCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc-----------CCCC--cEEEccCCH
Confidence            579999999                88899999999999999999998763210           0112  346799998


Q ss_pred             HHHHHHhc----CcCEEEEcCCCcc
Q 040431           68 ESLVKAIK----QVDVVISTVGHTL   88 (157)
Q Consensus        68 ~~~~~~~~----~~d~vv~~a~~~~   88 (157)
                      +++.+.+.    .+|++||+||...
T Consensus       255 ~~~~~~v~~~~~~~DilI~~Aav~d  279 (399)
T PRK05579        255 QEMLDAVLAALPQADIFIMAAAVAD  279 (399)
T ss_pred             HHHHHHHHHhcCCCCEEEEcccccc
Confidence            88877764    6899999999865

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.58  E-value=8e-07  Score=64.95  Aligned_cols=97  Identities=23%  Similarity=0.367  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      |+++|.|+ |-+|..+|+.|.+.|++|+++.++     +++++.... .......+.+|-+|++.++++ +.++|+++-.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d-----~~~~~~~~~-~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRD-----EERVEEFLA-DELDTHVVIGDATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcC-----HHHHHHHhh-hhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence            57899995 899999999999999999999999     555543111 124678899999999999999 8899999977


Q ss_pred             CCCcchHHHHHHHHHHHH-hcCCccEEEe
Q 040431           84 VGHTLLADQVKIIAAIKE-AEGASRGTLR  111 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~-~~~~~~~v~~  111 (157)
                      .+...  ...-++..+.+ .| +++++--
T Consensus        74 t~~d~--~N~i~~~la~~~~g-v~~viar   99 (225)
T COG0569          74 TGNDE--VNSVLALLALKEFG-VPRVIAR   99 (225)
T ss_pred             eCCCH--HHHHHHHHHHHhcC-CCcEEEE
Confidence            77643  23334444444 45 6666544

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.55  E-value=4.9e-07  Score=68.44  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhh-hhc--CCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLD-HFK--NLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~-~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++++|+|| |++|++++..|.+.|.+ |++++|+...  .++.+.+. ++.  ...+.+..+|+.+.+++.+.+..+|+
T Consensus       126 ~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~--~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        126 GKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDF--YERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchH--HHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            468999998 89999999999999986 9999998321  13333322 221  12345667888888888888888999


Q ss_pred             EEEcCCCcc
Q 040431           80 VISTVGHTL   88 (157)
Q Consensus        80 vv~~a~~~~   88 (157)
                      |||+.....
T Consensus       203 lINaTp~Gm  211 (289)
T PRK12548        203 LVNATLVGM  211 (289)
T ss_pred             EEEeCCCCC
Confidence            999887653

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.51  E-value=8.4e-07  Score=61.71  Aligned_cols=79  Identities=20%  Similarity=0.245  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~   77 (157)
                      ...+||||.+++|.+.++.|.+.|..|.+++...+.. .+.+   ++ ...++.|...|++.+.++..++.       ..
T Consensus        10 lvalvtggasglg~ataerlakqgasv~lldlp~skg-~~va---ke-lg~~~vf~padvtsekdv~aala~ak~kfgrl   84 (260)
T KOG1199|consen   10 LVALVTGGASGLGKATAERLAKQGASVALLDLPQSKG-ADVA---KE-LGGKVVFTPADVTSEKDVRAALAKAKAKFGRL   84 (260)
T ss_pred             eeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccc-hHHH---HH-hCCceEEeccccCcHHHHHHHHHHHHhhccce
Confidence            3579999999999999999999999999999875543 2222   22 25678999999999999888875       58


Q ss_pred             CEEEEcCCCcc
Q 040431           78 DVVISTVGHTL   88 (157)
Q Consensus        78 d~vv~~a~~~~   88 (157)
                      |..+|+||+..
T Consensus        85 d~~vncagia~   95 (260)
T KOG1199|consen   85 DALVNCAGIAY   95 (260)
T ss_pred             eeeeeccceee
Confidence            99999999865

>PRK05086 malate dehydrogenase; Provisional

Probab=98.51  E-value=1.4e-06  Score=66.73  Aligned_cols=103  Identities=15%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHh-C--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVK-A--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~-~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |||+|+||||.+|++++..|.. .  ++++++++|++. ......+. .+.  .....+.+  .+.+++.+.++++|+||
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl-~~~--~~~~~i~~--~~~~d~~~~l~~~DiVI   74 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDL-SHI--PTAVKIKG--FSGEDPTPALEGADVVL   74 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccceehhh-hcC--CCCceEEE--eCCCCHHHHcCCCCEEE
Confidence            5899999999999999998855 2  357788887632 11111111 111  11112222  22334456678999999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .++|...             ....+.+++++.+.+ ..+++.+.|-
T Consensus        75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsN  119 (312)
T PRK05086         75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITN  119 (312)
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence            9999855             235778888999887 7777777663

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.48  E-value=4.9e-07  Score=69.61  Aligned_cols=71  Identities=24%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-C-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-G-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++|+||||+|++|+.+|++|.+. | .+++++.|+     .+++..+....      ..+++.   ++.+.+.++|+||
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~-----~~rl~~La~el------~~~~i~---~l~~~l~~aDiVv  220 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ-----QERLQELQAEL------GGGKIL---SLEEALPEADIVV  220 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC-----HHHHHHHHHHh------ccccHH---hHHHHHccCCEEE
Confidence            579999999999999999999864 5 588888887     44554443211      113332   4667888999999


Q ss_pred             EcCCCcc
Q 040431           82 STVGHTL   88 (157)
Q Consensus        82 ~~a~~~~   88 (157)
                      |.++...
T Consensus       221 ~~ts~~~  227 (340)
T PRK14982        221 WVASMPK  227 (340)
T ss_pred             ECCcCCc
Confidence            9999854

>cd00704 MDH Malate dehydrogenase

Probab=98.44  E-value=3e-06  Score=65.14  Aligned_cols=93  Identities=15%  Similarity=0.074  Sum_probs=60.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh-----------
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH-----------   67 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----------   67 (157)
                      ||.|+||+|.+|+.++..|...+.       +++.++++...   +++           +....|+.|.           
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~---~~~-----------~g~~~Dl~d~~~~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM---KAL-----------EGVVMELQDCAFPLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc---Ccc-----------ceeeeehhhhcccccCCcEEe
Confidence            799999999999999999988652       48888887410   111           1112222221           


Q ss_pred             HHHHHHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHh-cCCccEEEec
Q 040431           68 ESLVKAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEA-EGASRGTLRT  112 (157)
Q Consensus        68 ~~~~~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~-~~~~~~v~~S  112 (157)
                      ....+.++++|+||+.||...             ....+.+.+.+.+. +....++.+|
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            234567889999999999966             33366677777777 3234455544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.42  E-value=7.9e-07  Score=64.19  Aligned_cols=132  Identities=14%  Similarity=0.100  Sum_probs=79.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~   77 (157)
                      +.+++||++.+||..++..+.+.+.+.....+.....+   .+.+............+|+.+..-+.++.+       +-
T Consensus         7 ~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~---~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gkr   83 (253)
T KOG1204|consen    7 KVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE---LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGKR   83 (253)
T ss_pred             eEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc---ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCce
Confidence            46899999999999999999999876554444433221   111111111223445566665554444443       47


Q ss_pred             CEEEEcCCCcc--------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           78 DVVISTVGHTL--------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        78 d~vv~~a~~~~--------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      |.||||||...                          +.-...+++...+..-.+.+|++||..+....+.     -..|
T Consensus        84 ~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~-----wa~y  158 (253)
T KOG1204|consen   84 DIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSS-----WAAY  158 (253)
T ss_pred             eEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccH-----HHHh
Confidence            99999999976                          1112233333444311267999999776554332     3467


Q ss_pred             hHhHhhhhHHHHH
Q 040431          132 EMTELIDQKIFIY  144 (157)
Q Consensus       132 ~~~~~~~~~~~~~  144 (157)
                      ..+|.+.++++..
T Consensus       159 c~~KaAr~m~f~~  171 (253)
T KOG1204|consen  159 CSSKAARNMYFMV  171 (253)
T ss_pred             hhhHHHHHHHHHH
Confidence            7788888777544

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.42  E-value=8.5e-07  Score=69.51  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHH-HhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVK-AIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~d~vv   81 (157)
                      +++|.|.||||++|+.|++.|.++ ..+|..+.+.++..  ...   ... .  ......|+.+.++++. .++++|+||
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG--~~i---~~~-~--~~l~~~~~~~~~~~~~~~~~~~DvVf  109 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG--QSF---GSV-F--PHLITQDLPNLVAVKDADFSDVDAVF  109 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC--CCc---hhh-C--ccccCccccceecCCHHHhcCCCEEE
Confidence            569999999999999999999998 46899888764321  111   100 0  1112233332222222 247899999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      .+.+..   ....+++.+ +.+  .++|-+|+..-+.
T Consensus       110 ~Alp~~---~s~~i~~~~-~~g--~~VIDlSs~fRl~  140 (381)
T PLN02968        110 CCLPHG---TTQEIIKAL-PKD--LKIVDLSADFRLR  140 (381)
T ss_pred             EcCCHH---HHHHHHHHH-hCC--CEEEEcCchhccC
Confidence            987764   577788886 444  5799998866544

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.41  E-value=1.7e-06  Score=66.76  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCc---EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHP---TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~---v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |++|++|.|+||||++|+.|++.|.++++.   +..+... ... ..++.    +.  +   ...++.+.+.. + ++++
T Consensus         1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-G~~l~----~~--~---~~l~~~~~~~~-~-~~~v   67 (336)
T PRK05671          1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-GHSVP----FA--G---KNLRVREVDSF-D-FSQV   67 (336)
T ss_pred             CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-CCeec----cC--C---cceEEeeCChH-H-hcCC
Confidence            776789999999999999999999987653   3344322 111 11111    11  1   12333322221 1 4789


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      |++|..++..   ....+++.+.+.|  .++|=.|+.--
T Consensus        68 D~vFla~p~~---~s~~~v~~~~~~G--~~VIDlS~~fR  101 (336)
T PRK05671         68 QLAFFAAGAA---VSRSFAEKARAAG--CSVIDLSGALP  101 (336)
T ss_pred             CEEEEcCCHH---HHHHHHHHHHHCC--CeEEECchhhc
Confidence            9999888743   4566888888877  35777776543

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.41  E-value=2.7e-06  Score=65.72  Aligned_cols=93  Identities=16%  Similarity=0.205  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +++|+|.||||++|+.|++.|.+++|   ++..+.+..+..  +..   . +  .+......|+.+.     .+.++|+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g--~~l---~-~--~g~~i~v~d~~~~-----~~~~vDvV   67 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG--KEL---S-F--KGKELKVEDLTTF-----DFSGVDIA   67 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC--Cee---e-e--CCceeEEeeCCHH-----HHcCCCEE
Confidence            45899999999999999999999776   457777664322  111   1 1  1233444455432     23689999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |.+++..   .+..+...+.+.| . ++|=+|+.
T Consensus        68 f~A~g~g---~s~~~~~~~~~~G-~-~VIDlS~~   96 (334)
T PRK14874         68 LFSAGGS---VSKKYAPKAAAAG-A-VVIDNSSA   96 (334)
T ss_pred             EECCChH---HHHHHHHHHHhCC-C-EEEECCch
Confidence            9988776   3667777777777 3 56666664

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.40  E-value=7.2e-07  Score=65.27  Aligned_cols=67  Identities=16%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             EEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------CcCE
Q 040431            8 LFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QVDV   79 (157)
Q Consensus         8 litG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~d~   79 (157)
                      .||. ++|++|.++|++|++.|++|+++++....         .   ..  ....+|+.+.+++.+++.       ++|+
T Consensus        18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l---------~---~~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDi   83 (227)
T TIGR02114        18 SITNHSTGHLGKIITETFLSAGHEVTLVTTKRAL---------K---PE--PHPNLSIREIETTKDLLITLKELVQEHDI   83 (227)
T ss_pred             eecCCcccHHHHHHHHHHHHCCCEEEEEcChhhc---------c---cc--cCCcceeecHHHHHHHHHHHHHHcCCCCE
Confidence            3444 58999999999999999999988753110         0   00  013468887777665543       6899


Q ss_pred             EEEcCCCcc
Q 040431           80 VISTVGHTL   88 (157)
Q Consensus        80 vv~~a~~~~   88 (157)
                      +||+||...
T Consensus        84 LVnnAgv~d   92 (227)
T TIGR02114        84 LIHSMAVSD   92 (227)
T ss_pred             EEECCEecc
Confidence            999999764

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=98.38  E-value=1e-05  Score=58.63  Aligned_cols=82  Identities=16%  Similarity=0.098  Sum_probs=61.9

Q ss_pred             CCeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++|+|-  ..-|++.+++.|.+.|.++.....++ .. ..+.+.+.+.. ..-.++.||+++.+++.+++.      
T Consensus         6 GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l-~krv~~la~~~-~s~~v~~cDV~~d~~i~~~f~~i~~~~   82 (259)
T COG0623           6 GKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RL-EKRVEELAEEL-GSDLVLPCDVTNDESIDALFATIKKKW   82 (259)
T ss_pred             CceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HH-HHHHHHHHhhc-cCCeEEecCCCCHHHHHHHHHHHHHhh
Confidence            689999993  36799999999999999999888773 11 22222222221 124568999999999988875      


Q ss_pred             -CcCEEEEcCCCcc
Q 040431           76 -QVDVVISTVGHTL   88 (157)
Q Consensus        76 -~~d~vv~~a~~~~   88 (157)
                       +.|.+||..++..
T Consensus        83 g~lD~lVHsIaFa~   96 (259)
T COG0623          83 GKLDGLVHSIAFAP   96 (259)
T ss_pred             CcccEEEEEeccCC
Confidence             6899999999977

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=98.36  E-value=1.4e-05  Score=59.27  Aligned_cols=95  Identities=20%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      |++|+|.|||+= |..+++.|.+.|+++++..-...+.          .....+..+.+-+.|.+++.+.++  +++.||
T Consensus         2 ~~~IlvlgGT~e-gr~la~~L~~~g~~v~~Svat~~g~----------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VI   70 (248)
T PRK08057          2 MPRILLLGGTSE-ARALARALAAAGVDIVLSLAGRTGG----------PADLPGPVRVGGFGGAEGLAAYLREEGIDLVI   70 (248)
T ss_pred             CceEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCCC----------cccCCceEEECCCCCHHHHHHHHHHCCCCEEE
Confidence            778999999887 9999999999999888766553221          123467778888879999999997  799999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      +...++..+.++++.++|.+.+ ++.+=|
T Consensus        71 DATHPfA~~is~~a~~ac~~~~-ipyiR~   98 (248)
T PRK08057         71 DATHPYAAQISANAAAACRALG-IPYLRL   98 (248)
T ss_pred             ECCCccHHHHHHHHHHHHHHhC-CcEEEE
Confidence            9999999999999999999998 664433

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.35  E-value=4.7e-06  Score=72.29  Aligned_cols=90  Identities=23%  Similarity=0.187  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-Cc-------------EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HP-------------TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES   69 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~-------------v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~   69 (157)
                      +++|+|+|+ |++|+..++.|.+.+ .+             |.+.+++     .++++.+.+.. +++..+.+|+.|.++
T Consensus       569 ~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-----~~~a~~la~~~-~~~~~v~lDv~D~e~  641 (1042)
T PLN02819        569 SQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-----LKDAKETVEGI-ENAEAVQLDVSDSES  641 (1042)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-----HHHHHHHHHhc-CCCceEEeecCCHHH
Confidence            578999996 999999999998763 33             6666666     45554443322 367889999999999


Q ss_pred             HHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           70 LVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        70 ~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +.++++++|+||++.....   ...++.+|.+.|
T Consensus       642 L~~~v~~~DaVIsalP~~~---H~~VAkaAieaG  672 (1042)
T PLN02819        642 LLKYVSQVDVVISLLPASC---HAVVAKACIELK  672 (1042)
T ss_pred             HHHhhcCCCEEEECCCchh---hHHHHHHHHHcC
Confidence            9999999999999998864   456666777765

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=98.35  E-value=7e-06  Score=65.62  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=71.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      |+|+|+|+ |.+|+++++.|.+.|++|++++++     +++.+.+.+  ..++.++.+|.++++.++++ +.++|.+|..
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~-----~~~~~~~~~--~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTD-----EERLRRLQD--RLDVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECC-----HHHHHHHHh--hcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            48999996 999999999999999999999988     555544432  24688999999999999988 7899999987


Q ss_pred             CCCcchHHHHHHHHHHHHh-cCCccEEE
Q 040431           84 VGHTLLADQVKIIAAIKEA-EGASRGTL  110 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~-~~~~~~v~  110 (157)
                      .....  ....++..+++. + ..+++-
T Consensus        73 ~~~~~--~n~~~~~~~r~~~~-~~~ii~   97 (453)
T PRK09496         73 TDSDE--TNMVACQIAKSLFG-APTTIA   97 (453)
T ss_pred             cCChH--HHHHHHHHHHHhcC-CCeEEE
Confidence            76543  233344556665 4 444443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=98.34  E-value=2e-05  Score=51.34  Aligned_cols=93  Identities=26%  Similarity=0.387  Sum_probs=68.8

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEcCC
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVISTVG   85 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~a~   85 (157)
                      |+|.|. |.+|..+++.|.+.+.+|++++++     ++..+.+.   ...+.++.+|.+|++.++++ +.+++.++-...
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d-----~~~~~~~~---~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRD-----PERVEELR---EEGVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESS-----HHHHHHHH---HTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECC-----cHHHHHHH---hcccccccccchhhhHHhhcCccccCEEEEccC
Confidence            678885 889999999999977799999998     66655443   33488999999999999887 568999997777


Q ss_pred             CcchHHHHHHHHHHHHhcCCccEEE
Q 040431           86 HTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      ..  .....++..+++.+...+++-
T Consensus        72 ~d--~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   72 DD--EENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             SH--HHHHHHHHHHHHHTTTSEEEE
T ss_pred             CH--HHHHHHHHHHHHHCCCCeEEE
Confidence            53  445556667777552345443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.34  E-value=2.9e-06  Score=65.74  Aligned_cols=101  Identities=12%  Similarity=0.081  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEE-EccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV-IGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~-~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |++|+|+||||++|+.+++.|.+. +.+++.+.++...  .+..   .+.. ..+... ..++.+.+..  .+.++|+||
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~--g~~l---~~~~-~~~~~~~~~~~~~~~~~--~~~~vD~Vf   73 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSA--GKPL---SDVH-PHLRGLVDLVLEPLDPE--ILAGADVVF   73 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcccc--Ccch---HHhC-cccccccCceeecCCHH--HhcCCCEEE
Confidence            679999999999999999999987 4688776664221  1111   1111 111111 1233333332  346799999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      .+.+..   ....++..+.+.|  .++|=.|+.--.
T Consensus        74 ~alP~~---~~~~~v~~a~~aG--~~VID~S~~fR~  104 (343)
T PRK00436         74 LALPHG---VSMDLAPQLLEAG--VKVIDLSADFRL  104 (343)
T ss_pred             ECCCcH---HHHHHHHHHHhCC--CEEEECCcccCC
Confidence            877664   4667777777766  578777775433

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.33  E-value=2.4e-06  Score=57.61  Aligned_cols=75  Identities=20%  Similarity=0.321  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++|.|+ |..|++++.+|.+.|.+ |++++|+     .++++.+.+.. ..++.++..     +++.+.+.++|+||
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt-----~~ra~~l~~~~~~~~~~~~~~-----~~~~~~~~~~DivI   80 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAALGAKEITIVNRT-----PERAEALAEEFGGVNIEAIPL-----EDLEEALQEADIVI   80 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESS-----HHHHHHHHHHHTGCSEEEEEG-----GGHCHHHHTESEEE
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECC-----HHHHHHHHHHcCccccceeeH-----HHHHHHHhhCCeEE
Confidence            679999996 89999999999999976 9999998     77777665443 334555444     23446678899999


Q ss_pred             EcCCCcch
Q 040431           82 STVGHTLL   89 (157)
Q Consensus        82 ~~a~~~~~   89 (157)
                      +..+....
T Consensus        81 ~aT~~~~~   88 (135)
T PF01488_consen   81 NATPSGMP   88 (135)
T ss_dssp             E-SSTTST
T ss_pred             EecCCCCc
Confidence            99888753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.30  E-value=5.8e-06  Score=56.15  Aligned_cols=95  Identities=21%  Similarity=0.224  Sum_probs=61.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhH----hhh---hcCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQL----LDH---FKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~----~~~---~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |||.|+||+|.+|++++..|...+  .++++++++     +++++-    +.+   ....+......   +.+    .++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-----~~~~~g~a~Dl~~~~~~~~~~~~i~~~---~~~----~~~   68 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-----EDKAEGEALDLSHASAPLPSPVRITSG---DYE----ALK   68 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-----HHHHHHHHHHHHHHHHGSTEEEEEEES---SGG----GGT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-----cccceeeehhhhhhhhhcccccccccc---ccc----ccc
Confidence            589999999999999999999987  479999988     333321    111   11122333332   222    357


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ++|+||..+|...             ....+.+.+.+.+.+....++.+
T Consensus        69 ~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv  117 (141)
T PF00056_consen   69 DADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV  117 (141)
T ss_dssp             TESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-
T ss_pred             cccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe
Confidence            8999999999865             33356667777777622334433

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.26  E-value=2.1e-05  Score=51.89  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      ||.|+||||++|+.+++.|.++. .++..+..++... .......... .....-+.++-.+.+.    +.++|+||.+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSA-GKPLSEVFPH-PKGFEDLSVEDADPEE----LSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTT-TSBHHHTTGG-GTTTEEEBEEETSGHH----HTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecccc-CCeeehhccc-cccccceeEeecchhH----hhcCCEEEecC
Confidence            68999999999999999999965 4655544443311 1122111110 1111111111134443    37899999997


Q ss_pred             CCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           85 GHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +..   ....+.+.+.+.| . ++|=+|+
T Consensus        75 ~~~---~~~~~~~~~~~~g-~-~ViD~s~   98 (121)
T PF01118_consen   75 PHG---ASKELAPKLLKAG-I-KVIDLSG   98 (121)
T ss_dssp             CHH---HHHHHHHHHHHTT-S-EEEESSS
T ss_pred             chh---HHHHHHHHHhhCC-c-EEEeCCH
Confidence            775   3677888888887 3 5655555

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.24  E-value=1.6e-05  Score=52.79  Aligned_cols=89  Identities=17%  Similarity=0.211  Sum_probs=55.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHh-CCCcEE-EEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVK-AGHPTF-VLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~-~g~~v~-~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      |+|+|.|++|.+|+.+++.+.+ .+.++. +++|+++.........+......       .+.-.+++++++..+|++|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~-------~~~v~~~l~~~~~~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPL-------GVPVTDDLEELLEEADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST--------SSBEBS-HHHHTTH-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCc-------ccccchhHHHhcccCCEEEE
Confidence            4899999999999999999999 567866 44555422211111111111111       11122567777878999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhc
Q 040431           83 TVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +..+   ......++.+.+.+
T Consensus        74 fT~p---~~~~~~~~~~~~~g   91 (124)
T PF01113_consen   74 FTNP---DAVYDNLEYALKHG   91 (124)
T ss_dssp             ES-H---HHHHHHHHHHHHHT
T ss_pred             cCCh---HHhHHHHHHHHhCC
Confidence            9844   45777888888887

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.22  E-value=8.5e-06  Score=65.16  Aligned_cols=75  Identities=23%  Similarity=0.372  Sum_probs=55.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-HhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+++ +|..+++.|++.|++|++.+++..    +..+ ...++...++.++..|..+     +...++|+||+
T Consensus         5 ~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~----~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~d~vv~   74 (450)
T PRK14106          5 GKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEE----DQLKEALEELGELGIELVLGEYPE-----EFLEGVDLVVV   74 (450)
T ss_pred             CCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHHHHHhcCCEEEeCCcch-----hHhhcCCEEEE
Confidence            57999999866 999999999999999999988632    1111 1223333467788888766     23467999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      ++|...
T Consensus        75 ~~g~~~   80 (450)
T PRK14106         75 SPGVPL   80 (450)
T ss_pred             CCCCCC
Confidence            999764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=98.18  E-value=4.9e-05  Score=60.76  Aligned_cols=100  Identities=19%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      +++++|+|+ |.+|+.+++.|.+.|++|++++++     +++.+.+.+.. .++.++.+|.++++.++++ +.++|+|+-
T Consensus       231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~-----~~~~~~~~~~~-~~~~~i~gd~~~~~~L~~~~~~~a~~vi~  303 (453)
T PRK09496        231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERD-----PERAEELAEEL-PNTLVLHGDGTDQELLEEEGIDEADAFIA  303 (453)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC-----HHHHHHHHHHC-CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence            578999996 999999999999999999999988     66655444321 3578899999999988665 468999987


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ......  ....+...+++.+ ..+++....
T Consensus       304 ~~~~~~--~n~~~~~~~~~~~-~~~ii~~~~  331 (453)
T PRK09496        304 LTNDDE--ANILSSLLAKRLG-AKKVIALVN  331 (453)
T ss_pred             CCCCcH--HHHHHHHHHHHhC-CCeEEEEEC
Confidence            666532  2222333456666 556655443

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.15  E-value=1.4e-05  Score=62.15  Aligned_cols=102  Identities=16%  Similarity=0.108  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhc-----CCCeEEEEccCCChHHHHHHh
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFK-----NLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~-----~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      |+ +++|+|+||||++|+.+++.|.++.. +++.+.++.+.. ...........     .....-+.+...+++.    +
T Consensus         1 ~~-~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~-G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~   74 (349)
T PRK08664          1 MM-KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSA-GKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA----V   74 (349)
T ss_pred             CC-CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhc-CCcccccccccccccccccccceEEEeCCHHH----h
Confidence            54 68999999999999999999998764 888775553322 11111000000     0000011121224443    3


Q ss_pred             cCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           75 KQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        75 ~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .++|+|+.+.+..   ....+++.+.+.| .. +|-.|+
T Consensus        75 ~~~DvVf~a~p~~---~s~~~~~~~~~~G-~~-vIDls~  108 (349)
T PRK08664         75 DDVDIVFSALPSD---VAGEVEEEFAKAG-KP-VFSNAS  108 (349)
T ss_pred             cCCCEEEEeCChh---HHHHHHHHHHHCC-CE-EEECCc
Confidence            5799998876654   3456667777777 44 455554

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.14  E-value=3e-05  Score=59.29  Aligned_cols=105  Identities=19%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCC--CCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRES--TISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~--~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |||.|+|+||++|..++..|+..|.  +|+++++..  ........+........+... .....+  +. +.++++|+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i~~~~--d~-~~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EIKISS--DL-SDVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc-EEEECC--CH-HHhCCCCEE
Confidence            5899999999999999999999986  499999853  111111111111100111111 111111  12 237899999


Q ss_pred             EEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEecc
Q 040431           81 ISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        81 v~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      |..+|...             ....+.+.+.+.+......++.+++
T Consensus        77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n  122 (309)
T cd05294          77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN  122 (309)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            99999643             1335556666666642345555554

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.13  E-value=3.2e-05  Score=59.49  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=59.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH----------
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE----------   68 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----------   68 (157)
                      +|.|+||+|.+|+.++..|...+.       +++.++++....   +           .+....|+.|..          
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---~-----------a~g~~~Dl~d~~~~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---V-----------LEGVVMELMDCAFPLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---c-----------cceeEeehhcccchhcCceecc
Confidence            589999999999999999987552       588888863320   0           111222222221          


Q ss_pred             -HHHHHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHh-cCCccEEEec
Q 040431           69 -SLVKAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEA-EGASRGTLRT  112 (157)
Q Consensus        69 -~~~~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~-~~~~~~v~~S  112 (157)
                       +..+.++++|+||+.||...             ....+.+.+.+.+. +....++.+|
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs  125 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG  125 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence             23466789999999999965             23355666676666 2234455544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.12  E-value=1.2e-05  Score=63.29  Aligned_cols=72  Identities=22%  Similarity=0.298  Sum_probs=54.4

Q ss_pred             CCeEEEEcC----------------CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh
Q 040431            4 KSKILFIGG----------------TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGa----------------tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   67 (157)
                      .++++||||                ||.+|.++++.|...|++|+++.+.....           ....  ....|+++.
T Consensus       185 ~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~-----------~~~~--~~~~~v~~~  251 (390)
T TIGR00521       185 GKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL-----------TPPG--VKSIKVSTA  251 (390)
T ss_pred             CceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC-----------CCCC--cEEEEeccH
Confidence            578999998                35699999999999999999888663211           1112  245788888


Q ss_pred             HHH-HHHh----cCcCEEEEcCCCcc
Q 040431           68 ESL-VKAI----KQVDVVISTVGHTL   88 (157)
Q Consensus        68 ~~~-~~~~----~~~d~vv~~a~~~~   88 (157)
                      +++ +.++    .+.|++|++||...
T Consensus       252 ~~~~~~~~~~~~~~~D~~i~~Aavsd  277 (390)
T TIGR00521       252 EEMLEAALNELAKDFDIFISAAAVAD  277 (390)
T ss_pred             HHHHHHHHHhhcccCCEEEEcccccc
Confidence            777 4444    36899999999986

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.09  E-value=6.4e-05  Score=55.77  Aligned_cols=95  Identities=25%  Similarity=0.236  Sum_probs=73.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+|+|+|||+= |..+++.|.+.|+ |++.+-.+.+.      .+.......+.++.+-+.+.+++.+.++  +++.||+
T Consensus         1 m~ILvlgGTtE-~r~la~~L~~~g~-v~~sv~t~~g~------~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vID   72 (249)
T PF02571_consen    1 MKILVLGGTTE-GRKLAERLAEAGY-VIVSVATSYGG------ELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVID   72 (249)
T ss_pred             CEEEEEechHH-HHHHHHHHHhcCC-EEEEEEhhhhH------hhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            58999999987 9999999999998 55443332211      1111122456788888889999999997  7999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccE
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRG  108 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~  108 (157)
                      ...++....++++.++|.+.| ++-+
T Consensus        73 ATHPfA~~is~na~~a~~~~~-ipyl   97 (249)
T PF02571_consen   73 ATHPFAAEISQNAIEACRELG-IPYL   97 (249)
T ss_pred             CCCchHHHHHHHHHHHHhhcC-cceE
Confidence            999999999999999999998 6544

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=98.04  E-value=0.00022  Score=47.86  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=72.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC--------------CCCCchhhHh----hhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST--------------ISGPSKSQLL----DHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~--------------~~~~~~~~~~----~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.| .|.+|+.+++.|...|. ++++++.+.-              .....|.+.+    .+.. ..++..+..+
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            46899999 59999999999999997 6888886541              1112233322    2222 3345666666


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      + +.+...++++++|+||.+....  .....+-+.+.+.+ . .+++.+..+.++
T Consensus        81 ~-~~~~~~~~~~~~d~vi~~~d~~--~~~~~l~~~~~~~~-~-p~i~~~~~g~~G  130 (135)
T PF00899_consen   81 I-DEENIEELLKDYDIVIDCVDSL--AARLLLNEICREYG-I-PFIDAGVNGFYG  130 (135)
T ss_dssp             C-SHHHHHHHHHTSSEEEEESSSH--HHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred             c-ccccccccccCCCEEEEecCCH--HHHHHHHHHHHHcC-C-CEEEEEeecCEE
Confidence            6 5677888889999999987763  34445667788887 3 577776654443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.04  E-value=3.2e-05  Score=56.23  Aligned_cols=73  Identities=29%  Similarity=0.253  Sum_probs=49.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-----cCCCe--EEEEccCCChHHHHHHhcCc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-----KNLGV--NLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~v--~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |+|.|+||+|.+|++++..|.+.|++|++.+|+     +++.+.+...     ...++  ....   .+   ..+.++.+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~-----~~~~~~l~~~~~~~~~~~g~~~~~~~---~~---~~ea~~~a   69 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD-----LEKAEEAAAKALEELGHGGSDIKVTG---AD---NAEAAKRA   69 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC-----HHHHHHHHHHHHhhccccCCCceEEE---eC---hHHHHhcC
Confidence            479999999999999999999999999999887     4444433221     11111  1111   12   23456789


Q ss_pred             CEEEEcCCCcc
Q 040431           78 DVVISTVGHTL   88 (157)
Q Consensus        78 d~vv~~a~~~~   88 (157)
                      |+||.......
T Consensus        70 DvVilavp~~~   80 (219)
T TIGR01915        70 DVVILAVPWDH   80 (219)
T ss_pred             CEEEEECCHHH
Confidence            99998877654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=98.03  E-value=3.5e-05  Score=59.70  Aligned_cols=90  Identities=14%  Similarity=0.240  Sum_probs=59.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcE---EEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPT---FVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v---~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +|.|.||||++|+.|++.|.+++|.+   ..+.+..+..  ...      ...+......|+. .    ..+.++|++|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g--~~~------~~~~~~~~~~~~~-~----~~~~~~D~v~~   67 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAG--RKV------TFKGKELEVNEAK-I----ESFEGIDIALF   67 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCC--Cee------eeCCeeEEEEeCC-h----HHhcCCCEEEE
Confidence            58999999999999999999987754   3444553321  111      1122445555553 2    23478999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +++..   .+..+...+.+.| . ++|=.|+
T Consensus        68 a~g~~---~s~~~a~~~~~~G-~-~VID~ss   93 (339)
T TIGR01296        68 SAGGS---VSKEFAPKAAKCG-A-IVIDNTS   93 (339)
T ss_pred             CCCHH---HHHHHHHHHHHCC-C-EEEECCH
Confidence            99886   3666777777776 3 4655555

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=98.02  E-value=9.4e-05  Score=57.29  Aligned_cols=108  Identities=20%  Similarity=0.301  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------C--CCchhh----Hhhhhc-CCCeEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------S--GPSKSQ----LLDHFK-NLGVNLVI   61 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~--~~~~~~----~~~~~~-~~~v~~~~   61 (157)
                      ..+|+|.|+ |++|+++++.|...|. ++++++.+.-.              .  ...|.+    .+.+.. ...+..+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            568999996 9999999999999997 79998886410              0  011222    223332 23455666


Q ss_pred             ccCCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           62 GDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        62 ~D~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      .++ +++.+.+++++.|+||.+....  .....+-++|.+.+ + .+|+.+..+.+
T Consensus       103 ~~~-~~~~~~~~~~~~DlVid~~Dn~--~~r~~ln~~~~~~~-i-P~i~~~~~g~~  153 (339)
T PRK07688        103 QDV-TAEELEELVTGVDLIIDATDNF--ETRFIVNDAAQKYG-I-PWIYGACVGSY  153 (339)
T ss_pred             ccC-CHHHHHHHHcCCCEEEEcCCCH--HHHHHHHHHHHHhC-C-CEEEEeeeeee
Confidence            666 4566778889999999987754  33445677788887 4 46676655543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=98.02  E-value=8.8e-05  Score=57.44  Aligned_cols=108  Identities=21%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC---C-------------CCchh----hHhhhhc-CCCeEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI---S-------------GPSKS----QLLDHFK-NLGVNLVI   61 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~---~-------------~~~~~----~~~~~~~-~~~v~~~~   61 (157)
                      ..+|+|.|+ |.+|+++++.|...|. ++++++++.-.   .             ...|+    +.+.+.. ...++.+.
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            568999995 8899999999999997 78888887410   0             01122    2233332 23456667


Q ss_pred             ccCCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           62 GDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        62 ~D~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      .|++ ++.+.++++++|+||.......  .-..+-+++.+.+ ++ +|+.+..+.+
T Consensus       103 ~~~~-~~~~~~~~~~~DlVid~~D~~~--~r~~in~~~~~~~-ip-~i~~~~~g~~  153 (338)
T PRK12475        103 TDVT-VEELEELVKEVDLIIDATDNFD--TRLLINDLSQKYN-IP-WIYGGCVGSY  153 (338)
T ss_pred             ccCC-HHHHHHHhcCCCEEEEcCCCHH--HHHHHHHHHHHcC-CC-EEEEEecccE
Confidence            7774 5568888999999999886543  2334556677776 44 6666554433

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=98.00  E-value=9.1e-05  Score=61.02  Aligned_cols=94  Identities=21%  Similarity=0.329  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      .+++|.| .|.+|+.+++.|.++|+++++++++     +++.+.++   +.+...+.+|.+|++.++++ ++++|.++-.
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d-----~~~~~~~~---~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETS-----RTRVDELR---ERGIRAVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECC-----HHHHHHHH---HCCCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence            4789999 5999999999999999999999988     66665554   34689999999999998876 4689988866


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEE
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGT  109 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v  109 (157)
                      .+...  ...+++..+++.....+++
T Consensus       489 ~~~~~--~~~~iv~~~~~~~~~~~ii  512 (558)
T PRK10669        489 IPNGY--EAGEIVASAREKRPDIEII  512 (558)
T ss_pred             cCChH--HHHHHHHHHHHHCCCCeEE
Confidence            55532  2334555566654233444

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.99  E-value=8.6e-05  Score=53.29  Aligned_cols=95  Identities=20%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ||++.|.| +|.+|+.|+++|.+.||+|++.+|+.+    ++.+...+.....       + ..-+..++.+.+|+||-.
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~----~~~~a~a~~l~~~-------i-~~~~~~dA~~~aDVVvLA   67 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGP----KALAAAAAALGPL-------I-TGGSNEDAAALADVVVLA   67 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCCh----hHHHHHHHhhccc-------c-ccCChHHHHhcCCEEEEe
Confidence            34566655 899999999999999999999977743    3333222222222       1 222344556789999987


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ..+..   ...++..+...- ..++|.-.+..
T Consensus        68 VP~~a---~~~v~~~l~~~~-~~KIvID~tnp   95 (211)
T COG2085          68 VPFEA---IPDVLAELRDAL-GGKIVIDATNP   95 (211)
T ss_pred             ccHHH---HHhHHHHHHHHh-CCeEEEecCCC
Confidence            77654   344555555432 24676655543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.97  E-value=3e-05  Score=59.19  Aligned_cols=106  Identities=17%  Similarity=0.292  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh--------hhcCCCe------EEEEccCCChHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD--------HFKNLGV------NLVIGDVLNHES   69 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~v------~~~~~D~~~~~~   69 (157)
                      +++|.|+| .|.+|.+++..|++.|++|++++|+     ++..+...        .....+.      ......+.-..+
T Consensus         2 ~~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~-----~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~   75 (308)
T PRK06129          2 MGSVAIIG-AGLIGRAWAIVFARAGHEVRLWDAD-----PAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDS   75 (308)
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCC-----HHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECc
Confidence            45899999 6999999999999999999999998     33322111        1111110      000001111123


Q ss_pred             HHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           70 LVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        70 ~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      +.++++++|+|+.+.... ......++..+.+.. .+..++.||+..+
T Consensus        76 ~~~a~~~ad~Vi~avpe~-~~~k~~~~~~l~~~~-~~~~ii~ssts~~  121 (308)
T PRK06129         76 LADAVADADYVQESAPEN-LELKRALFAELDALA-PPHAILASSTSAL  121 (308)
T ss_pred             HHHhhCCCCEEEECCcCC-HHHHHHHHHHHHHhC-CCcceEEEeCCCC
Confidence            555677899999887553 333444555555543 3455566766553

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.97  E-value=0.00018  Score=54.97  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhh---cCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHF---KNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      +||.|+|+ |.+|+.++..|+..|  ++|++++++.... ......+.+.   ..........   +.+    .+.++|+
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~~~~~i~~~---~~~----~l~~aDI   71 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKA-EGEALDLEDALAFLPSPVKIKAG---DYS----DCKDADI   71 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccCCCeEEEcC---CHH----HhCCCCE
Confidence            47999995 999999999999998  5899999984322 1111111111   1122222222   222    3579999


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ||+.+|...             ....+.+.+.+.+.+....++.+|
T Consensus        72 VIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          72 VVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            999999864             222556666666665233444444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK04148 hypothetical protein; Provisional

Probab=97.96  E-value=0.0003  Score=47.19  Aligned_cols=92  Identities=17%  Similarity=0.157  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .+++++.| +| .|.+++..|.+.|++|++++.+     +...+..+   ...+.++..|+.+++-  ++-+++|.|+..
T Consensus        17 ~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~-----~~aV~~a~---~~~~~~v~dDlf~p~~--~~y~~a~liysi   84 (134)
T PRK04148         17 NKKIVELG-IG-FYFKVAKKLKESGFDVIVIDIN-----EKAVEKAK---KLGLNAFVDDLFNPNL--EIYKNAKLIYSI   84 (134)
T ss_pred             CCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECC-----HHHHHHHH---HhCCeEEECcCCCCCH--HHHhcCCEEEEe
Confidence            46799999 57 6999999999999999999998     54443332   3357999999998773  455689999865


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      =.+  .+-+..+++.+.+.+ ..-++.
T Consensus        85 rpp--~el~~~~~~la~~~~-~~~~i~  108 (134)
T PRK04148         85 RPP--RDLQPFILELAKKIN-VPLIIK  108 (134)
T ss_pred             CCC--HHHHHHHHHHHHHcC-CCEEEE
Confidence            554  456677888888887 554433

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.96  E-value=9.9e-05  Score=61.33  Aligned_cols=88  Identities=20%  Similarity=0.317  Sum_probs=71.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      ++|+|.| .|-+|+.+++.|.++|+++++++++     +++.+.+++   .+..++.+|.++++.++++ +.++|.+|-.
T Consensus       401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d-----~~~v~~~~~---~g~~v~~GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERD-----ISAVNLMRK---YGYKVYYGDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             CCEEEec-CchHHHHHHHHHHhCCCCEEEEECC-----HHHHHHHHh---CCCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence            5799999 5999999999999999999999988     666665543   4678999999999999877 5689999876


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ....  +....++..+++.+
T Consensus       472 ~~d~--~~n~~i~~~~r~~~  489 (601)
T PRK03659        472 CNEP--EDTMKIVELCQQHF  489 (601)
T ss_pred             eCCH--HHHHHHHHHHHHHC
Confidence            6663  45566777777765

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.94  E-value=0.0002  Score=54.83  Aligned_cols=102  Identities=19%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      |||.|+|++|.+|++++..|+..+  .++++++.+  ....+..+. .+-. ........  ...+++.+.++++|+||.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL-~~~~-~~~~i~~~--~~~~~~y~~~~daDivvi   74 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADL-SHIN-TPAKVTGY--LGPEELKKALKGADVVVI   74 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHh-HhCC-CcceEEEe--cCCCchHHhcCCCCEEEE
Confidence            489999999999999999998887  478888876  221222222 1111 11222211  022234466789999999


Q ss_pred             cCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           83 TVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        83 ~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      .||...             ....+.+.+.+.+.+....++.+|
T Consensus        75 taG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt  117 (310)
T cd01337          75 PAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS  117 (310)
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            999965             333555666666665234455544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.93  E-value=6.9e-05  Score=53.16  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=45.6

Q ss_pred             CCeEEEEcC----------------CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh
Q 040431            4 KSKILFIGG----------------TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGa----------------tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   67 (157)
                      .++|+||+|                ||..|.+|++++...|++|+.+.....-.           .+.++..+..  ...
T Consensus         3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~-----------~p~~~~~i~v--~sa   69 (185)
T PF04127_consen    3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP-----------PPPGVKVIRV--ESA   69 (185)
T ss_dssp             T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEEEE---SSH
T ss_pred             CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc-----------ccccceEEEe--cch
Confidence            567888875                69999999999999999999987763211           1335655554  444


Q ss_pred             HH----HHHHhcCcCEEEEcCCCcc
Q 040431           68 ES----LVKAIKQVDVVISTVGHTL   88 (157)
Q Consensus        68 ~~----~~~~~~~~d~vv~~a~~~~   88 (157)
                      ++    +.+.++..|++|++|+...
T Consensus        70 ~em~~~~~~~~~~~Di~I~aAAVsD   94 (185)
T PF04127_consen   70 EEMLEAVKELLPSADIIIMAAAVSD   94 (185)
T ss_dssp             HHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred             hhhhhhhccccCcceeEEEecchhh
Confidence            44    4444557899999999987

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.90  E-value=0.00012  Score=54.67  Aligned_cols=82  Identities=18%  Similarity=0.123  Sum_probs=52.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEe-cCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLV-RESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +++|.|+|++|.+|+.+++.+.+. +.++..+. +++..     ....          -..++...+++.++++++|+||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~-----~~~~----------~~~~i~~~~dl~~ll~~~DvVi   65 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP-----LVGQ----------GALGVAITDDLEAVLADADVLI   65 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc-----cccc----------CCCCccccCCHHHhccCCCEEE
Confidence            468999999999999999998875 57777644 44221     1100          1112323344555666789888


Q ss_pred             EcCCCcchHHHHHHHHHHHHhc
Q 040431           82 STVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ++..+..   ...++..+.+.|
T Consensus        66 d~t~p~~---~~~~~~~al~~G   84 (257)
T PRK00048         66 DFTTPEA---TLENLEFALEHG   84 (257)
T ss_pred             ECCCHHH---HHHHHHHHHHcC
Confidence            8885543   455666677766

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.90  E-value=9.7e-05  Score=56.52  Aligned_cols=86  Identities=14%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEE-----ccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI-----GDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~-----~D~~~~~~~~~~~~~~d   78 (157)
                      +++|.|.||..| |.+|+..|.++|++|++-.|+     ++..+.+... ..+..++.     .++.-..++.++++++|
T Consensus         1 ~~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~-----~~~~~~i~~~-~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad   73 (329)
T COG0240           1 MMKIAVIGAGSW-GTALAKVLARNGHEVRLWGRD-----EEIVAEINET-RENPKYLPGILLPPNLKATTDLAEALDGAD   73 (329)
T ss_pred             CceEEEEcCChH-HHHHHHHHHhcCCeeEEEecC-----HHHHHHHHhc-CcCccccCCccCCcccccccCHHHHHhcCC
Confidence            468999997555 999999999999999999999     6555554433 23444443     12223456778888899


Q ss_pred             EEEEcCCCcchHHHHHHHHHH
Q 040431           79 VVISTVGHTLLADQVKIIAAI   99 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~   99 (157)
                      +|+.......   .+.+++.+
T Consensus        74 ~iv~avPs~~---~r~v~~~l   91 (329)
T COG0240          74 IIVIAVPSQA---LREVLRQL   91 (329)
T ss_pred             EEEEECChHH---HHHHHHHH
Confidence            9997776654   34444444

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=97.89  E-value=1.8e-05  Score=57.50  Aligned_cols=101  Identities=14%  Similarity=0.165  Sum_probs=74.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVG   85 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a~   85 (157)
                      ..++.|+.||.|+++|+.....++.|-++.|+....      .++.. ...+..+.+|....+-++..+.++..++-.++
T Consensus        54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~------~l~sw-~~~vswh~gnsfssn~~k~~l~g~t~v~e~~g  126 (283)
T KOG4288|consen   54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQ------TLSSW-PTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMG  126 (283)
T ss_pred             HHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcc------hhhCC-CcccchhhccccccCcchhhhcCCcccHHHhc
Confidence            578999999999999999999999999999884321      11222 24567777887665555556667777887777


Q ss_pred             Ccc-------hHH--HHHHHHHHHHhcCCccEEEeccc
Q 040431           86 HTL-------LAD--QVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        86 ~~~-------~~~--~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ...       +++  ..+.++++.+.| +++|+|+|..
T Consensus       127 gfgn~~~m~~ing~ani~a~kaa~~~g-v~~fvyISa~  163 (283)
T KOG4288|consen  127 GFGNIILMDRINGTANINAVKAAAKAG-VPRFVYISAH  163 (283)
T ss_pred             CccchHHHHHhccHhhHHHHHHHHHcC-CceEEEEEhh
Confidence            765       222  445677788888 9999999864

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.88  E-value=6.8e-05  Score=58.25  Aligned_cols=101  Identities=11%  Similarity=0.077  Sum_probs=60.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-CCcEEEE-ecCCCCCCCchhhHhhhhcCCCeEEE-EccCCChHHHHHHhcCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-GHPTFVL-VRESTISGPSKSQLLDHFKNLGVNLV-IGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~v~~~-~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      ++|.|+||||++|+.+++.|.++ +.+++.+ +++++.  ....   .+.. ..+... ..++.+. +..++..++|++|
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sa--gk~~---~~~~-~~l~~~~~~~~~~~-~~~~~~~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESA--GKPV---SEVH-PHLRGLVDLNLEPI-DEEEIAEDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhc--CCCh---HHhC-ccccccCCceeecC-CHHHhhcCCCEEE
Confidence            47999999999999999999987 4677744 443211  1111   1101 111111 1112211 1223345799999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      .+.+..   ....++..+.+.|  .++|=+|+..-.
T Consensus        74 ~alP~~---~s~~~~~~~~~~G--~~VIDlS~~fR~  104 (346)
T TIGR01850        74 LALPHG---VSAELAPELLAAG--VKVIDLSADFRL  104 (346)
T ss_pred             ECCCch---HHHHHHHHHHhCC--CEEEeCChhhhc
Confidence            888775   4677888887776  578888875433

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.87  E-value=0.00065  Score=45.97  Aligned_cols=104  Identities=18%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCC--------------CCCCCchhhHh----hhhc-CCCeEEEEccCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-PTFVLVRES--------------TISGPSKSQLL----DHFK-NLGVNLVIGDVL   65 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~--------------~~~~~~~~~~~----~~~~-~~~v~~~~~D~~   65 (157)
                      +|+|.|+ |.+|+++++.|...|. ++++++.+.              ......|.+.+    .+.. ...+..+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            5899995 9999999999999997 688887653              11112233322    2222 234455555554


Q ss_pred             ChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           66 NHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        66 ~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +. ...+.+.++|+||.+...  ......+.+.+++.+  ..++..++.+
T Consensus        80 ~~-~~~~~~~~~diVi~~~d~--~~~~~~l~~~~~~~~--i~~i~~~~~g  124 (143)
T cd01483          80 ED-NLDDFLDGVDLVIDAIDN--IAVRRALNRACKELG--IPVIDAGGLG  124 (143)
T ss_pred             hh-hHHHHhcCCCEEEECCCC--HHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence            33 346777899999998887  345566778888886  3466666654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.85  E-value=0.00024  Score=49.27  Aligned_cols=93  Identities=20%  Similarity=0.215  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc----------CCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK----------NLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----------~~~v~~~~~D~~~~~~~~~~   73 (157)
                      |++|.+.| .|-+|+.++++|++.|++|++.+|+     +++.+.+.+..          -.+.+++-.-+.+.++++++
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~-----~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v   74 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRS-----PEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAV   74 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESS-----HHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHH
T ss_pred             CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccc-----hhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhh
Confidence            56999999 6999999999999999999999988     55554433211          01224444444566666555


Q ss_pred             hcC--------c-CEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           74 IKQ--------V-DVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        74 ~~~--------~-d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +.+        . .++|++... .....+.+.+.+.+.|
T Consensus        75 ~~~~~i~~~l~~g~iiid~sT~-~p~~~~~~~~~~~~~g  112 (163)
T PF03446_consen   75 LFGENILAGLRPGKIIIDMSTI-SPETSRELAERLAAKG  112 (163)
T ss_dssp             HHCTTHGGGS-TTEEEEE-SS---HHHHHHHHHHHHHTT
T ss_pred             hhhhHHhhccccceEEEecCCc-chhhhhhhhhhhhhcc
Confidence            443        2 344444433 3566667777777665

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.85  E-value=6.6e-05  Score=51.29  Aligned_cols=74  Identities=19%  Similarity=0.205  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |.+|.++++.|.+.| ++|++.+|+     +++.+.+.+.....  .+..+..+.+   +.++++|+||+
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~-----~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~Dvvi~   87 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRT-----LEKAKALAERFGEL--GIAIAYLDLE---ELLAEADLIIN   87 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCC-----HHHHHHHHHHHhhc--ccceeecchh---hccccCCEEEe
Confidence            578999996 999999999999986 789999887     54444332221111  1122333333   34678999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      +.+...
T Consensus        88 ~~~~~~   93 (155)
T cd01065          88 TTPVGM   93 (155)
T ss_pred             CcCCCC
Confidence            988865

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.83  E-value=0.00028  Score=54.79  Aligned_cols=94  Identities=13%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++|.|.||||++|..|++.|.+++|   ++..+....+.  ..+.    .+.  +......++ +++    .+.++|+|
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa--Gk~~----~~~--~~~~~v~~~-~~~----~~~~~D~v   73 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA--GKKV----TFE--GRDYTVEEL-TED----SFDGVDIA   73 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC--CCee----eec--CceeEEEeC-CHH----HHcCCCEE
Confidence            57899999999999999999998776   44444333221  1111    011  122222222 222    34689999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |.+++..   ....+...+.+.|  .++|=.|+.-
T Consensus        74 f~a~p~~---~s~~~~~~~~~~g--~~VIDlS~~f  103 (344)
T PLN02383         74 LFSAGGS---ISKKFGPIAVDKG--AVVVDNSSAF  103 (344)
T ss_pred             EECCCcH---HHHHHHHHHHhCC--CEEEECCchh
Confidence            9888775   3667777776666  3577777644

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.83  E-value=0.00029  Score=54.12  Aligned_cols=100  Identities=17%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcC--CCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKN--LGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .+||.|+|+ |.+|+.++..|+..|.  ++..++++.........+ +.+...  .++.....   +.    +.++++|+
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~D-l~~~~~~~~~~~i~~~---~~----~~~~~adi   76 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMD-LSHAVPFTSPTKIYAG---DY----SDCKDADL   76 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHH-HHhhccccCCeEEEeC---CH----HHhCCCCE
Confidence            479999997 9999999999999885  799999874322111111 111110  12333222   22    23689999


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ||..||...             ....+.+++.+.+.+...+++.+|
T Consensus        77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            999999854             222455566666665233455444

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.83  E-value=0.00034  Score=50.30  Aligned_cols=108  Identities=21%  Similarity=0.203  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.| .|.+|+++++.|...|. ++++++.+.-.              ....|.+    .+.+.. ..+++.+..+
T Consensus        21 ~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        21 NSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            46899999 59999999999999996 78888876311              1112222    222222 1233444444


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      + +++.+.+.++++|+||.+....  .....+-+.+.+.+ + .+++.+..+.+
T Consensus       100 i-~~~~~~~~~~~~D~Vi~~~d~~--~~r~~l~~~~~~~~-i-p~i~~~~~g~~  148 (202)
T TIGR02356       100 V-TAENLELLINNVDLVLDCTDNF--ATRYLINDACVALG-T-PLISAAVVGFG  148 (202)
T ss_pred             C-CHHHHHHHHhCCCEEEECCCCH--HHHHHHHHHHHHcC-C-CEEEEEeccCe
Confidence            4 4466778889999999987654  33344666677776 4 46676654433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.82  E-value=3.5e-05  Score=53.20  Aligned_cols=87  Identities=18%  Similarity=0.323  Sum_probs=56.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC-----CCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN-----LGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      ||.|.|| |..|.+++..|.++|++|.+.+|+     ++..+.+.+...     +++..- ..+.-..+++++++++|+|
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~-----~~~~~~i~~~~~n~~~~~~~~l~-~~i~~t~dl~~a~~~ad~I   73 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRD-----EEQIEEINETRQNPKYLPGIKLP-ENIKATTDLEEALEDADII   73 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTEEEEEETSC-----HHHHHHHHHHTSETTTSTTSBEE-TTEEEESSHHHHHTT-SEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCEEEEEecc-----HHHHHHHHHhCCCCCCCCCcccC-cccccccCHHHHhCcccEE
Confidence            6899996 888999999999999999999998     555554443221     111111 1221124466778999999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHh
Q 040431           81 ISTVGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~  102 (157)
                      +.......   .+.+++.+...
T Consensus        74 iiavPs~~---~~~~~~~l~~~   92 (157)
T PF01210_consen   74 IIAVPSQA---HREVLEQLAPY   92 (157)
T ss_dssp             EE-S-GGG---HHHHHHHHTTT
T ss_pred             EecccHHH---HHHHHHHHhhc
Confidence            98777765   44566665553

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.80  E-value=0.00015  Score=56.87  Aligned_cols=36  Identities=17%  Similarity=0.419  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .+++|.|.||.|.+|..+++.|.+.|++|++.+|+.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            357899999999999999999999999999999863

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.80  E-value=0.00034  Score=55.66  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=36.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      |. +++|.|.| .|++|..++..|.+.|++|++++++     +++.+.+
T Consensus         1 m~-~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~-----~~~v~~l   42 (415)
T PRK11064          1 MS-FETISVIG-LGYIGLPTAAAFASRQKQVIGVDIN-----QHAVDTI   42 (415)
T ss_pred             CC-ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCC-----HHHHHHH
Confidence            65 68999999 6999999999999999999999988     5555443

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.80  E-value=0.00036  Score=53.48  Aligned_cols=101  Identities=19%  Similarity=0.126  Sum_probs=61.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ||.|+|++|.+|++++..|+..+.  +++++++++  ...+..+ +.+.. ....+....  +.+++.+.++++|+||..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~D-L~~~~-~~~~i~~~~--~~~~~~~~~~daDivvit   74 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAAD-LSHIP-TAASVKGFS--GEEGLENALKGADVVVIP   74 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEch-hhcCC-cCceEEEec--CCCchHHHcCCCCEEEEe
Confidence            689999999999999999988874  788888875  1122222 22211 112222111  112345678899999999


Q ss_pred             CCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           84 VGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        84 a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ||...             ....+.+.+.+.+.+....++.+|
T Consensus        75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs  116 (312)
T TIGR01772        75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT  116 (312)
T ss_pred             CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence            99865             333555666666665223444443

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.80  E-value=0.00017  Score=55.54  Aligned_cols=105  Identities=16%  Similarity=0.027  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCC--CCCchhhHhhhh--cCCCeEEEEccCCChHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTI--SGPSKSQLLDHF--KNLGVNLVIGDVLNHES   69 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~--~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~   69 (157)
                      |.+++||.|+|++|.+|+.++..|+..+.       ++..++.+...  ...+..+...-.  ...++.+..       .
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-------~   73 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITD-------D   73 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEec-------C
Confidence            76788999999999999999999987662       68888875321  111222211110  011222221       1


Q ss_pred             HHHHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc-CCccEEEec
Q 040431           70 LVKAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAE-GASRGTLRT  112 (157)
Q Consensus        70 ~~~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~-~~~~~v~~S  112 (157)
                      ..+.++++|+||..||...             ....+.+.+.+.+.. ....++.+|
T Consensus        74 ~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         74 PNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             hHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            2345789999999999754             222556666666633 134555554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.78  E-value=0.00022  Score=53.26  Aligned_cols=102  Identities=17%  Similarity=0.029  Sum_probs=63.0

Q ss_pred             EEEEcCCCcchHHHHHHHHhCC----CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            7 ILFIGGTGYIGKFTVEASVKAG----HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      |.|+||+|.+|..++..|+..|    .+|.+++++...... ....+++.....   ....++-.+++.+.++++|+||.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~-~~~dl~~~~~~~---~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKG-VAMDLQDAVEPL---ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchH-HHHHHHHhhhhc---cCcEEEECCchHHHhCCCCEEEE
Confidence            5799998999999999999988    689999987533311 111222221111   11122212234566789999999


Q ss_pred             cCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           83 TVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        83 ~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      .++...             ....+.+++.+.+......++..|
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t  119 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS  119 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            998754             333566677776665334555554

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.78  E-value=5.8e-05  Score=58.07  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCC-----CeEEEEccCCChHHHHHHhc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL-----GVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~-----~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |+.+|+|.|.| .|-+|.+++..|.+.|++|++.+|+     +++.+.+......     +... ...+.-.++..+.++
T Consensus         1 ~~~~m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~-----~~~~~~i~~~~~~~~~~~g~~~-~~~~~~~~~~~e~~~   73 (328)
T PRK14618          1 MHHGMRVAVLG-AGAWGTALAVLAASKGVPVRLWARR-----PEFAAALAAERENREYLPGVAL-PAELYPTADPEEALA   73 (328)
T ss_pred             CCCCCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHhCcccccCCCCcC-CCCeEEeCCHHHHHc
Confidence            77788999998 5999999999999999999999997     4444443322100     1000 000111123445567


Q ss_pred             CcCEEEEcCCCc
Q 040431           76 QVDVVISTVGHT   87 (157)
Q Consensus        76 ~~d~vv~~a~~~   87 (157)
                      .+|+||-+....
T Consensus        74 ~aD~Vi~~v~~~   85 (328)
T PRK14618         74 GADFAVVAVPSK   85 (328)
T ss_pred             CCCEEEEECchH
Confidence            789888777765

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.76  E-value=0.00014  Score=56.19  Aligned_cols=98  Identities=15%  Similarity=0.156  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC---CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG---HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |++.++|.|.||||++|..+.+.|.++.   .++..+...++..  .+..    +....+.+.  ++   +.  ..+.++
T Consensus         1 ~~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG--~~~~----~~~~~~~v~--~~---~~--~~~~~~   67 (336)
T PRK08040          1 MSEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAG--ETLR----FGGKSVTVQ--DA---AE--FDWSQA   67 (336)
T ss_pred             CCCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCC--ceEE----ECCcceEEE--eC---ch--hhccCC
Confidence            6667899999999999999999998853   3666665443221  1111    111122222  22   11  123578


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      |++|..++..   ....+.+.+.+.|  .++|=.|+..-
T Consensus        68 Dvvf~a~p~~---~s~~~~~~~~~~g--~~VIDlS~~fR  101 (336)
T PRK08040         68 QLAFFVAGRE---ASAAYAEEATNAG--CLVIDSSGLFA  101 (336)
T ss_pred             CEEEECCCHH---HHHHHHHHHHHCC--CEEEECChHhc
Confidence            9999888765   4667888887776  35777776443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.76  E-value=0.001  Score=47.69  Aligned_cols=111  Identities=18%  Similarity=0.265  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC---C-------------CCchhh----Hhhhhc-CCCeEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI---S-------------GPSKSQ----LLDHFK-NLGVNLVI   61 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~---~-------------~~~~~~----~~~~~~-~~~v~~~~   61 (157)
                      ..+|+|.|+ |.+|.++++.|+..|. ++++++.+.-.   .             ...|.+    .+++.. ..+++.+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~   97 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE   97 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            468999996 5599999999999995 68888765311   0             011221    233332 23455555


Q ss_pred             ccCCC-hHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccccc
Q 040431           62 GDVLN-HESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSS  119 (157)
Q Consensus        62 ~D~~~-~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~  119 (157)
                      .++.+ .+...+.++++|+||.+...  ......+-+.|.+.+ + .+++.++.+.++.
T Consensus        98 ~~~~~~~~~~~~~~~~~dvVi~~~d~--~~~~~~ln~~c~~~~-i-p~i~~~~~G~~G~  152 (198)
T cd01485          98 EDSLSNDSNIEEYLQKFTLVIATEEN--YERTAKVNDVCRKHH-I-PFISCATYGLIGY  152 (198)
T ss_pred             cccccchhhHHHHHhCCCEEEECCCC--HHHHHHHHHHHHHcC-C-CEEEEEeecCEEE
Confidence            55542 45566778899999987554  344455777788887 4 5777777666553

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=97.76  E-value=0.00056  Score=50.39  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      +++|+|.|||+= +..|++.|...+..+++.+-.....  ...   .    .....+.+-..+.+.+.+.++  ++|.||
T Consensus         2 ~~~ilvlGGT~D-ar~la~~L~~~~~~~~~ss~t~~g~--~l~---~----~~~~~~~~G~l~~e~l~~~l~e~~i~llI   71 (257)
T COG2099           2 MMRILLLGGTSD-ARALAKKLAAAPVDIILSSLTGYGA--KLA---E----QIGPVRVGGFLGAEGLAAFLREEGIDLLI   71 (257)
T ss_pred             CceEEEEeccHH-HHHHHHHhhccCccEEEEEcccccc--cch---h----ccCCeeecCcCCHHHHHHHHHHcCCCEEE
Confidence            678999999987 9999999999885555444332221  111   1    111245566679999999997  799999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      +...++..+.+.+.+++|++.| ++-+-|
T Consensus        72 DATHPyAa~iS~Na~~aake~g-ipy~r~   99 (257)
T COG2099          72 DATHPYAARISQNAARAAKETG-IPYLRL   99 (257)
T ss_pred             ECCChHHHHHHHHHHHHHHHhC-CcEEEE
Confidence            9999999999999999999998 654433

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.75  E-value=0.0001  Score=55.54  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |++|++++.+|.+.| .+|++++|+     .++.+.+.+...... .+..+.    +..+.+..+|+|||
T Consensus       123 ~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~-----~~~a~~l~~~~~~~~-~~~~~~----~~~~~~~~~DivIn  191 (278)
T PRK00258        123 GKRILILGA-GGAARAVILPLLDLGVAEITIVNRT-----VERAEELAKLFGALG-KAELDL----ELQEELADFDLIIN  191 (278)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHHhhhcc-ceeecc----cchhccccCCEEEE
Confidence            468999996 999999999999999 789999998     666554433221110 011111    22345567999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      ..+...
T Consensus       192 aTp~g~  197 (278)
T PRK00258        192 ATSAGM  197 (278)
T ss_pred             CCcCCC
Confidence            887653

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.75  E-value=0.00029  Score=44.20  Aligned_cols=77  Identities=26%  Similarity=0.362  Sum_probs=51.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCC---CcEEEE-ecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAG---HPTFVL-VRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g---~~v~~~-~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      ||.|.| +|.+|+++++.|++.|   ++|.+. +|+     +++...+.+...  +.+...      +..++++.+|+||
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~-----~~~~~~~~~~~~--~~~~~~------~~~~~~~~advvi   66 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRS-----PEKAAELAKEYG--VQATAD------DNEEAAQEADVVI   66 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESS-----HHHHHHHHHHCT--TEEESE------EHHHHHHHTSEEE
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCc-----HHHHHHHHHhhc--cccccC------ChHHhhccCCEEE
Confidence            578886 7999999999999999   899966 777     777766544432  222111      2344566899999


Q ss_pred             EcCCCcchHHHHHHHHHH
Q 040431           82 STVGHTLLADQVKIIAAI   99 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~   99 (157)
                      .+.-+..   ...+++.+
T Consensus        67 lav~p~~---~~~v~~~i   81 (96)
T PF03807_consen   67 LAVKPQQ---LPEVLSEI   81 (96)
T ss_dssp             E-S-GGG---HHHHHHHH
T ss_pred             EEECHHH---HHHHHHHH
Confidence            9988876   33444444

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.74  E-value=0.00019  Score=57.49  Aligned_cols=33  Identities=36%  Similarity=0.500  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+|.|+||+|.+|.++++.|.+.|++|++++|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~   33 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRD   33 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            489999999999999999999999999999987

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.73  E-value=0.00033  Score=54.00  Aligned_cols=97  Identities=21%  Similarity=0.237  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh---HHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH---ESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~~--~~d   78 (157)
                      ..+|||+||+|.+|+..++-+...|..+++.+.+     .++.+.+++....    +..|+.+.   +.+.++..  ++|
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s-----~~k~~~~~~lGAd----~vi~y~~~~~~~~v~~~t~g~gvD  213 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-----SEKLELLKELGAD----HVINYREEDFVEQVRELTGGKGVD  213 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC-----HHHHHHHHhcCCC----EEEcCCcccHHHHHHHHcCCCCce
Confidence            4689999999999999999999999777777666     4444444444322    12234443   33333443  599


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +|++..|...   ....++.+...   ++++.++..+
T Consensus       214 vv~D~vG~~~---~~~~l~~l~~~---G~lv~ig~~~  244 (326)
T COG0604         214 VVLDTVGGDT---FAASLAALAPG---GRLVSIGALS  244 (326)
T ss_pred             EEEECCCHHH---HHHHHHHhccC---CEEEEEecCC
Confidence            9999999863   23344444443   4777777655

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.73  E-value=0.00041  Score=49.26  Aligned_cols=39  Identities=31%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      |+|.|.| .|++|..++..|.+.|++|+.++.+     +++.+.+
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~-----~~~v~~l   39 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDID-----EEKVEAL   39 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEEEE-S------HHHHHHH
T ss_pred             CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCC-----hHHHHHH
Confidence            5899998 7999999999999999999999988     5555444

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.72  E-value=0.00034  Score=53.14  Aligned_cols=96  Identities=21%  Similarity=0.302  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~~~d~vv~   82 (157)
                      ..+++|+||+|.+|.++++.+...|.+|++++++     +++.+.+.....  -.++  |..+ .+.+.+. .+.|.+++
T Consensus       163 ~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~-~~~d~v~~  232 (332)
T cd08259         163 GDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS-----PEKLKILKELGA--DYVI--DGSKFSEDVKKL-GGADVVIE  232 (332)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC-----HHHHHHHHHcCC--cEEE--ecHHHHHHHHhc-cCCCEEEE
Confidence            4589999999999999999999999999998877     444444433221  1111  2221 1222222 27899999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|...   ....++.+...   .+++.++...
T Consensus       233 ~~g~~~---~~~~~~~~~~~---g~~v~~g~~~  259 (332)
T cd08259         233 LVGSPT---IEESLRSLNKG---GRLVLIGNVT  259 (332)
T ss_pred             CCChHH---HHHHHHHhhcC---CEEEEEcCCC
Confidence            988643   34455555443   4788776543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.71  E-value=0.00028  Score=54.33  Aligned_cols=137  Identities=10%  Similarity=-0.021  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCC--CCCchhhHhhhh--cCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTI--SGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~--~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~   72 (157)
                      .+||.|+|++|.+|..++..|+..+.       +++.++.....  ...+..+...-.  ...++.+..   .+    .+
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~---~~----~~   74 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITD---DP----NV   74 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEec---Cc----HH
Confidence            57999999999999999999998773       68888875322  111222211100  001222211   12    34


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcC-CccEEEecccc---ccccCCCc-cCCccchhhHh
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEG-ASRGTLRTQKG---KMSSLSSE-MTTTLDMLEMT  134 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~-~~~~v~~Ss~~---~~~~~~~~-~~~~~~~~~~~  134 (157)
                      .++++|+||..||...             ....+.+.+.+.+.+. ...++.+|.--   .|.-.... -.++..+++.+
T Consensus        75 ~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~t  154 (322)
T cd01338          75 AFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMT  154 (322)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEeh
Confidence            5789999999999965             2235566667766651 34455554210   01111111 12445577775


Q ss_pred             HhhhhHHHHHHHhc
Q 040431          135 ELIDQKIFIYFWGR  148 (157)
Q Consensus       135 ~~~~~~~~~~~~~~  148 (157)
                      ++-...+ ...++.
T Consensus       155 ~LDs~Rl-~~~la~  167 (322)
T cd01338         155 RLDHNRA-KSQLAK  167 (322)
T ss_pred             HHHHHHH-HHHHHH
Confidence            5544444 555443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.71  E-value=0.00043  Score=53.29  Aligned_cols=101  Identities=13%  Similarity=0.011  Sum_probs=61.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCC--CCCchhhHhhhhc---CCCeEEEEccCCChHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTI--SGPSKSQLLDHFK---NLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~--~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~~~   71 (157)
                      +.||.|+|++|++|++++..|+..+.       +++.++.....  ...+..+.. +..   ..++.+.       ..-.
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~-~~~~~~~~~~~i~-------~~~~   74 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELE-DCAFPLLAGVVAT-------TDPE   74 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHh-hccccccCCcEEe-------cChH
Confidence            56999999999999999999988873       78888876321  111112111 111   0112111       1223


Q ss_pred             HHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcC-CccEEEec
Q 040431           72 KAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEG-ASRGTLRT  112 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~-~~~~v~~S  112 (157)
                      +.++++|+||..||...             ....+.+.+.+.+... ...++.+|
T Consensus        75 ~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        75 EAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            45789999999999965             2335667777777752 23444443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.71  E-value=0.00058  Score=57.04  Aligned_cols=88  Identities=19%  Similarity=0.392  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      .+|+|.| .|.+|+.+++.|.++|.++++++++     +++.+.+++   .+..++.+|.+|++-++++ ++++|.+|..
T Consensus       401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d-----~~~v~~~~~---~g~~v~~GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        401 PRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHD-----PDHIETLRK---FGMKVFYGDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             CcEEEEe-cChHHHHHHHHHHhCCCCEEEEECC-----HHHHHHHHh---cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence            5799999 5999999999999999999999998     777665543   4678999999999988765 5689999877


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ....  +....++..+++..
T Consensus       472 ~~d~--~~n~~i~~~ar~~~  489 (621)
T PRK03562        472 IDDP--QTSLQLVELVKEHF  489 (621)
T ss_pred             eCCH--HHHHHHHHHHHHhC
Confidence            6553  34455666666654

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.71  E-value=0.00026  Score=55.00  Aligned_cols=75  Identities=24%  Similarity=0.343  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----~~d~   79 (157)
                      .+.|||.||+|.+|+++++-+...+...++.+++     .++.++.+++...    ...|+.+++-.+++.+    +.|+
T Consensus       158 g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s-----~e~~~l~k~lGAd----~vvdy~~~~~~e~~kk~~~~~~Dv  228 (347)
T KOG1198|consen  158 GKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS-----KEKLELVKKLGAD----EVVDYKDENVVELIKKYTGKGVDV  228 (347)
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc-----cchHHHHHHcCCc----EeecCCCHHHHHHHHhhcCCCccE
Confidence            4689999999999999999888888555555566     4455555555422    3467777665555554    5999


Q ss_pred             EEEcCCCc
Q 040431           80 VISTVGHT   87 (157)
Q Consensus        80 vv~~a~~~   87 (157)
                      |++++|..
T Consensus       229 VlD~vg~~  236 (347)
T KOG1198|consen  229 VLDCVGGS  236 (347)
T ss_pred             EEECCCCC
Confidence            99999995

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.71  E-value=0.00037  Score=53.15  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcC---CCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKN---LGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |+||.|+|| |.+|+.++..++..|. +|++++++.........+ +.+...   ....+..  -.|   . +.++++|+
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~d-l~~~~~~~~~~~~i~~--~~d---~-~~~~~aDi   73 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALD-IAEAAPVEGFDTKITG--TND---Y-EDIAGSDV   73 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHH-HHhhhhhcCCCcEEEe--CCC---H-HHHCCCCE
Confidence            579999998 9999999999998875 899999864322111111 111100   1111111  012   2 23689999


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ||..++...             ....+.+++.+.+......++.+|
T Consensus        74 Vii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t  119 (307)
T PRK06223         74 VVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT  119 (307)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            999987644             223445555555554223455544

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=97.71  E-value=0.0009  Score=55.15  Aligned_cols=107  Identities=17%  Similarity=0.106  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHh---hhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLL---DHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~---~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      ..+|+|.| .|.+|++++..|+..|. ++++++-+....+-.++..+   +...++++.+-..|.+..+++.+.+++.|+
T Consensus       129 ~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~Di  207 (637)
T TIGR03693       129 NAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADW  207 (637)
T ss_pred             cccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcE
Confidence            45899999 58889999999999995 67666444322112222222   222355777777777888899999999999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      |++.+-.........+-++|.+.| ...+..+.
T Consensus       208 Vi~vsDdy~~~~Lr~lN~acvkeg-k~~IPai~  239 (637)
T TIGR03693       208 VLYVSDNGDIDDLHALHAFCKEEG-KGFIPAIC  239 (637)
T ss_pred             EEEECCCCChHHHHHHHHHHHHcC-CCeEEEEE
Confidence            999999887777888888899988 55555543

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.70  E-value=0.0025  Score=45.76  Aligned_cols=111  Identities=12%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecC---CCCCCC----------chhh----HhhhhcC-CCeEEEEccC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRE---STISGP----------SKSQ----LLDHFKN-LGVNLVIGDV   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~---~~~~~~----------~~~~----~~~~~~~-~~v~~~~~D~   64 (157)
                      ..+|+|.|+ |.+|+.++..|...|. ++++++.+   .++.+.          .|.+    .+.+..+ .++..+..++
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i   99 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI   99 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence            468999996 8899999999999997 69888887   333211          1111    1222221 2455555555


Q ss_pred             CChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           65 LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        65 ~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                       +.+.+.+++.++|+||.+.-.  ...-..+.+.+...-+...++..|...+++
T Consensus       100 -~~~~~~~~~~~~DlVi~a~Dn--~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~  150 (200)
T TIGR02354       100 -TEENIDKFFKDADIVCEAFDN--AEAKAMLVNAVLEKYKDKYLIAASGLAGYD  150 (200)
T ss_pred             -CHhHHHHHhcCCCEEEECCCC--HHHHHHHHHHHHHHcCCCcEEEEeccccCC
Confidence             456678888999999998433  222233455555442134455555555554

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=97.66  E-value=0.0011  Score=50.19  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh---HHHHHHhc-CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH---ESLVKAIK-QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~~-~~d~   79 (157)
                      ..+++|.||+|-+|+-+.+-..-+|++|+.+.-+     ++|.+.+.+...-+   ...|..++   +.+.++.. ++|+
T Consensus       151 GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg-----~eK~~~l~~~lGfD---~~idyk~~d~~~~L~~a~P~GIDv  222 (340)
T COG2130         151 GETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG-----AEKCDFLTEELGFD---AGIDYKAEDFAQALKEACPKGIDV  222 (340)
T ss_pred             CCEEEEEecccccchHHHHHHHhhCCeEEEecCC-----HHHHHHHHHhcCCc---eeeecCcccHHHHHHHHCCCCeEE
Confidence            5689999999999998877777779999998777     88888776532211   12344333   33444443 7999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccCC
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS  121 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~  121 (157)
                      .|.|.|-.-   ...+++.+..   ..||+..+-++.|....
T Consensus       223 yfeNVGg~v---~DAv~~~ln~---~aRi~~CG~IS~YN~~~  258 (340)
T COG2130         223 YFENVGGEV---LDAVLPLLNL---FARIPVCGAISQYNAPE  258 (340)
T ss_pred             EEEcCCchH---HHHHHHhhcc---ccceeeeeehhhcCCCC
Confidence            999999852   2233333333   35899999988998763

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.66  E-value=0.0002  Score=54.69  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |...++|.|.|+ |.+|..++..|++.|++|++++++
T Consensus         1 ~~~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~   36 (311)
T PRK06130          1 MNPIQNLAIIGA-GTMGSGIAALFARKGLQVVLIDVM   36 (311)
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence            665679999995 999999999999999999999987

>PRK08223 hypothetical protein; Validated

Probab=97.66  E-value=0.00076  Score=50.95  Aligned_cols=106  Identities=13%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.|+ |++|+++++.|...|. ++++++.+.-.              ....|.+    .+.+.. ..+++.+...
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~  105 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG  105 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            468999995 8999999999999995 67777766411              1112222    222232 2345555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++ ++.+.++++++|+||+..-......-..+-++|.+.+ ++ +|+.+.
T Consensus       106 l~-~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~-iP-~V~~~~  152 (287)
T PRK08223        106 IG-KENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG-IP-ALTAAP  152 (287)
T ss_pred             cC-ccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC-CC-EEEEec
Confidence            53 4557778899999997776543344456777888887 44 556543

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.66  E-value=0.00039  Score=51.90  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---CcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---HPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~~v~~~~r~   37 (157)
                      ||+|.|.| .|.+|..+++.|.+.|   ++|.+++|+
T Consensus         2 mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~   37 (267)
T PRK11880          2 MKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPS   37 (267)
T ss_pred             CCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCC
Confidence            77899999 5999999999999988   788888887

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.65  E-value=0.00034  Score=54.86  Aligned_cols=74  Identities=20%  Similarity=0.219  Sum_probs=55.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+++|+|+ |.+|...++.+...|.+|++++|+     +++.+.+......   .+..+..+++.+.+.+.++|+||+.
T Consensus       167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~-----~~~~~~l~~~~g~---~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDIN-----IDRLRQLDAEFGG---RIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECC-----HHHHHHHHHhcCc---eeEeccCCHHHHHHHHccCCEEEEc
Confidence            357999986 999999999999999999999987     5555444332222   1234556778888899999999998


Q ss_pred             CCC
Q 040431           84 VGH   86 (157)
Q Consensus        84 a~~   86 (157)
                      ++.
T Consensus       238 ~~~  240 (370)
T TIGR00518       238 VLI  240 (370)
T ss_pred             ccc
Confidence            744

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.65  E-value=0.00082  Score=49.19  Aligned_cols=106  Identities=17%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC--------------CCCCchhhH----hhhhcC-CCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST--------------ISGPSKSQL----LDHFKN-LGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~--------------~~~~~~~~~----~~~~~~-~~v~~~~~D   63 (157)
                      ..+|+|.| .|.+|+++++.|...|. ++++++.+.-              +....|.+.    +.+..+ .++..+..+
T Consensus        21 ~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~   99 (228)
T cd00757          21 NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER   99 (228)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence            46899999 59999999999999996 5666654431              111223222    222322 345555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      + +.+.+.++++++|+||.+....  ..-..+-+.+.+.+ + .+++.+..+
T Consensus       100 i-~~~~~~~~~~~~DvVi~~~d~~--~~r~~l~~~~~~~~-i-p~i~~g~~g  146 (228)
T cd00757         100 L-DAENAEELIAGYDLVLDCTDNF--ATRYLINDACVKLG-K-PLVSGAVLG  146 (228)
T ss_pred             e-CHHHHHHHHhCCCEEEEcCCCH--HHHHHHHHHHHHcC-C-CEEEEEecc
Confidence            5 4566778888999999987764  33345666677776 4 466665433

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.64  E-value=0.0025  Score=46.18  Aligned_cols=109  Identities=12%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCC---CCCC----------CchhhH----hhhhc-CCCeEEEEccC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRES---TISG----------PSKSQL----LDHFK-NLGVNLVIGDV   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~---~~~~----------~~~~~~----~~~~~-~~~v~~~~~D~   64 (157)
                      ..+|+|.|+ |.+|+++++.|...|. ++++++.+.   ++.+          ..|.+.    +.+.. ...++.+...+
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i  106 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI  106 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence            468999995 9999999999999996 588888773   2111          122222    22222 23445555555


Q ss_pred             CChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHh-cCCccEEEeccccccc
Q 040431           65 LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA-EGASRGTLRTQKGKMS  118 (157)
Q Consensus        65 ~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~  118 (157)
                      + .+.+.+.++++|+||.+.-..  .....+.+.+.+. +  ..+++.+..+.++
T Consensus       107 ~-~~~~~~~~~~~DvVI~a~D~~--~~r~~l~~~~~~~~~--~p~I~~~~~~~~~  156 (212)
T PRK08644        107 D-EDNIEELFKDCDIVVEAFDNA--ETKAMLVETVLEHPG--KKLVAASGMAGYG  156 (212)
T ss_pred             C-HHHHHHHHcCCCEEEECCCCH--HHHHHHHHHHHHhCC--CCEEEeehhhccC
Confidence            4 455677888999999885443  3334566778777 5  4566665554443

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00083  Score=49.83  Aligned_cols=90  Identities=21%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEE-EEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTF-VLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~-~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |++|.|.|++|..|+.+++.+.+.+ .++. ++.|.++.........+.-....++     .+++.  +.....++|++|
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv-----~v~~~--~~~~~~~~DV~I   74 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGV-----PVTDD--LLLVKADADVLI   74 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCc-----eeecc--hhhcccCCCEEE
Confidence            7899999999999999999999886 5544 5566643221111111111111111     11111  233344677777


Q ss_pred             EcCCCcchHHHHHHHHHHHHhc
Q 040431           82 STVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ++..+.   .+...++.|.+.+
T Consensus        75 DFT~P~---~~~~~l~~~~~~~   93 (266)
T COG0289          75 DFTTPE---ATLENLEFALEHG   93 (266)
T ss_pred             ECCCch---hhHHHHHHHHHcC
Confidence            777664   3566666666665

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.61  E-value=0.0026  Score=44.70  Aligned_cols=106  Identities=10%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCC---CCC----------CCchhh----Hhhhhc-CCCeEEEEccCCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-PTFVLVRES---TIS----------GPSKSQ----LLDHFK-NLGVNLVIGDVLN   66 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~---~~~----------~~~~~~----~~~~~~-~~~v~~~~~D~~~   66 (157)
                      +|+|.|+ |.+|+++++.|...|. ++++++.+.   ++.          ...|.+    .+.+.. ..++..+...+ +
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~-~   78 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI-D   78 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeec-C
Confidence            5899995 9999999999999997 588888775   111          112222    222232 23455555555 3


Q ss_pred             hHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHh-cCCccEEEecccccc
Q 040431           67 HESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA-EGASRGTLRTQKGKM  117 (157)
Q Consensus        67 ~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~  117 (157)
                      .+.+.+.++++|+||.+....  ..-..+.+.+.+. + + .+++-+..+.+
T Consensus        79 ~~~~~~~l~~~DlVi~~~d~~--~~r~~i~~~~~~~~~-i-p~i~~~~~~~~  126 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAFDNA--ETKAMLAESLLGNKN-K-PVVCASGMAGF  126 (174)
T ss_pred             hhhHHHHhcCCCEEEECCCCH--HHHHHHHHHHHHHCC-C-CEEEEehhhcc
Confidence            456778889999999985543  2234466777776 5 3 45555444443

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.61  E-value=0.00028  Score=56.09  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=55.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|.|+ |.+|+.++++|.+.|. +|++.+|+     .++.+.+.+..+. .     .....+++.+.+..+|+||+
T Consensus       181 ~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt-----~~ra~~La~~~~~-~-----~~~~~~~l~~~l~~aDiVI~  248 (414)
T PRK13940        181 SKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRT-----IEKAQKITSAFRN-A-----SAHYLSELPQLIKKADIIIA  248 (414)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHHhcC-C-----eEecHHHHHHHhccCCEEEE
Confidence            578999995 9999999999999995 68899888     6666655443221 1     22234566778889999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      +.+...
T Consensus       249 aT~a~~  254 (414)
T PRK13940        249 AVNVLE  254 (414)
T ss_pred             CcCCCC
Confidence            998876

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.61  E-value=0.00023  Score=53.36  Aligned_cols=71  Identities=18%  Similarity=0.258  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-cC-CCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-KN-LGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~-~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++|+|+ |.+|++++..|.+.|++|++++|+     +++.+.+.+. .. ..+...  +..+     .....+|+||
T Consensus       117 ~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~-----~~~~~~la~~~~~~~~~~~~--~~~~-----~~~~~~DivI  183 (270)
T TIGR00507       117 NQRVLIIGA-GGAARAVALPLLKADCNVIIANRT-----VSKAEELAERFQRYGEIQAF--SMDE-----LPLHRVDLII  183 (270)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHhhcCceEEe--chhh-----hcccCccEEE
Confidence            568999997 899999999999999999999888     5555443322 11 112222  1111     1234689999


Q ss_pred             EcCCCc
Q 040431           82 STVGHT   87 (157)
Q Consensus        82 ~~a~~~   87 (157)
                      ++.+..
T Consensus       184 natp~g  189 (270)
T TIGR00507       184 NATSAG  189 (270)
T ss_pred             ECCCCC
Confidence            998875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.61  E-value=0.00049  Score=52.92  Aligned_cols=98  Identities=13%  Similarity=0.222  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeE-E--EEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVN-L--VIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~-~--~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |+||.|.||+|+.|..|.+.|..+. .++..++.+....  .+   +.+. .++.. .  +.....|++.+  ...++|+
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g--~~---~~~~-~p~l~g~~~l~~~~~~~~~~--~~~~~Dv   73 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAG--KP---VSDV-HPNLRGLVDLPFQTIDPEKI--ELDECDV   73 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcC--Cc---hHHh-CcccccccccccccCChhhh--hcccCCE
Confidence            7899999999999999999999986 4766665443211  11   1111 11111 1  22222233333  3446899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ||.+.....   ...++..+.+.+  .++|=+|..
T Consensus        74 vFlalPhg~---s~~~v~~l~~~g--~~VIDLSad  103 (349)
T COG0002          74 VFLALPHGV---SAELVPELLEAG--CKVIDLSAD  103 (349)
T ss_pred             EEEecCchh---HHHHHHHHHhCC--CeEEECCcc
Confidence            998887763   677888888877  348877764

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.60  E-value=0.0012  Score=50.13  Aligned_cols=98  Identities=14%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH---hc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA---IK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~---~~--~~d   78 (157)
                      ..+++|+|+++.+|.++++.+...|.+|++++++     .++.+.+....   .. ...|..+.+....+   ..  ++|
T Consensus       167 ~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~-----~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~d  237 (342)
T cd08266         167 GETVLVHGAGSGVGSAAIQIAKLFGATVIATAGS-----EDKLERAKELG---AD-YVIDYRKEDFVREVRELTGKRGVD  237 (342)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcC---CC-eEEecCChHHHHHHHHHhCCCCCc
Confidence            4689999999999999999999999999988877     44444443321   11 12344444433333   22  589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      .++++++..   .....++.+...   ++++.+++...
T Consensus       238 ~~i~~~g~~---~~~~~~~~l~~~---G~~v~~~~~~~  269 (342)
T cd08266         238 VVVEHVGAA---TWEKSLKSLARG---GRLVTCGATTG  269 (342)
T ss_pred             EEEECCcHH---HHHHHHHHhhcC---CEEEEEecCCC
Confidence            999999863   234455555443   47888876543

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.59  E-value=0.00036  Score=49.10  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|.|.| .|.||+.+++.|...|.+|+..+|..
T Consensus        36 g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~   69 (178)
T PF02826_consen   36 GKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSP   69 (178)
T ss_dssp             TSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred             CCEEEEEE-EcCCcCeEeeeeecCCceeEEecccC
Confidence            57899999 69999999999999999999999884

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.59  E-value=0.0004  Score=53.07  Aligned_cols=96  Identities=14%  Similarity=0.132  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHH---Hh--cCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVK---AI--KQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~---~~--~~~d   78 (157)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++     +++.+.+.++.   .+. ..|..+.+.+.+   ..  .++|
T Consensus       139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s-----~~~~~~~~~lG---a~~-vi~~~~~~~~~~~~~~~~~~gvd  209 (325)
T TIGR02825       139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKVAYLKKLG---FDV-AFNYKTVKSLEETLKKASPDGYD  209 (325)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcC---CCE-EEeccccccHHHHHHHhCCCCeE
Confidence            4589999999999999999888889999988877     55665554432   211 223322222222   22  2589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +++++.|..   .....++.+...   ++++.++..
T Consensus       210 vv~d~~G~~---~~~~~~~~l~~~---G~iv~~G~~  239 (325)
T TIGR02825       210 CYFDNVGGE---FSNTVIGQMKKF---GRIAICGAI  239 (325)
T ss_pred             EEEECCCHH---HHHHHHHHhCcC---cEEEEecch
Confidence            999988853   234455555554   478877654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.59  E-value=0.00042  Score=53.06  Aligned_cols=81  Identities=16%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      |.+|.|.||||++|..|++.|.++.+ ++..+..+...                      |+.+   .++.+.++|++|.
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~----------------------~~~~---~~~~~~~~DvvFl   56 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK----------------------DAAA---RRELLNAADVAIL   56 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC----------------------cccC---chhhhcCCCEEEE
Confidence            78999999999999999999988763 55555433110                      1111   1234567898887


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +.+..   ....++..+.+.|  .++|=+|+.
T Consensus        57 alp~~---~s~~~~~~~~~~g--~~VIDlSad   83 (313)
T PRK11863         57 CLPDD---AAREAVALIDNPA--TRVIDASTA   83 (313)
T ss_pred             CCCHH---HHHHHHHHHHhCC--CEEEECChh
Confidence            77554   3566777776665  357777764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.58  E-value=0.00035  Score=52.95  Aligned_cols=92  Identities=17%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|. |.+|+.+++.|...|.+|++.+|+     +++.....+.   +...     ...+++.+.++++|+||+.
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~-----~~~~~~~~~~---g~~~-----~~~~~l~~~l~~aDiVint  216 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSALGARVFVGARS-----SADLARITEM---GLIP-----FPLNKLEEKVAEIDIVINT  216 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHC---CCee-----ecHHHHHHHhccCCEEEEC
Confidence            478999995 889999999999999999999988     4433322211   1111     1345567788899999998


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .....+  ....++.+.+   ..-++.++|.
T Consensus       217 ~P~~ii--~~~~l~~~k~---~aliIDlas~  242 (287)
T TIGR02853       217 IPALVL--TADVLSKLPK---HAVIIDLASK  242 (287)
T ss_pred             CChHHh--CHHHHhcCCC---CeEEEEeCcC
Confidence            754321  1223333322   2456667663

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.00075  Score=51.44  Aligned_cols=102  Identities=16%  Similarity=0.178  Sum_probs=67.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .+.+.|+|+.| +|.--++.....|++|+++++++.    .+.+.++.+.   .+....-..|++.++++....|.++|.
T Consensus       182 G~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~----kkeea~~~LG---Ad~fv~~~~d~d~~~~~~~~~dg~~~~  253 (360)
T KOG0023|consen  182 GKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSK----KKEEAIKSLG---ADVFVDSTEDPDIMKAIMKTTDGGIDT  253 (360)
T ss_pred             CcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCch----hHHHHHHhcC---cceeEEecCCHHHHHHHHHhhcCccee
Confidence            57899999877 999888888888999999999842    3333333332   233333334888888888766666666


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      +..........++..++..|   ++|+++-...
T Consensus       254 v~~~a~~~~~~~~~~lk~~G---t~V~vg~p~~  283 (360)
T KOG0023|consen  254 VSNLAEHALEPLLGLLKVNG---TLVLVGLPEK  283 (360)
T ss_pred             eeeccccchHHHHHHhhcCC---EEEEEeCcCC
Confidence            55433333455666666654   7888876443

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.58  E-value=0.00063  Score=52.17  Aligned_cols=101  Identities=14%  Similarity=0.084  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .+||.|+|+ |.+|+.++..|+..+  .++++++.+.........+ +.+..  .....+...  .|.+    .++++|+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D-l~~~~~~~~~~~v~~~--~dy~----~~~~adi   74 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD-LQHGSAFLKNPKIEAD--KDYS----VTANSKV   74 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH-HHHhhccCCCCEEEEC--CCHH----HhCCCCE
Confidence            579999996 999999999998887  3788888874322111111 11111  011122221  1222    2689999


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ||..||...             ....+.+.+.+.+.+....++.+|
T Consensus        75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  120 (312)
T cd05293          75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS  120 (312)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence            999999855             222445555555554223444444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.58  E-value=0.00032  Score=53.01  Aligned_cols=77  Identities=22%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|.|+ |+.|++++.+|.+.|. +|++++|+     .++.+.+.+..........  +...+++...+..+|+|||
T Consensus       125 ~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt-----~~ka~~La~~~~~~~~~~~--~~~~~~~~~~~~~~DiVIn  196 (282)
T TIGR01809       125 GFRGLVIGA-GGTSRAAVYALASLGVTDITVINRN-----PDKLSRLVDLGVQVGVITR--LEGDSGGLAIEKAAEVLVS  196 (282)
T ss_pred             CceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHHhhhcCccee--ccchhhhhhcccCCCEEEE
Confidence            468999995 9999999999999996 69999998     6676655433221111111  1122344455678999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      +.+...
T Consensus       197 aTp~g~  202 (282)
T TIGR01809       197 TVPADV  202 (282)
T ss_pred             CCCCCC
Confidence            988764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.57  E-value=0.0031  Score=46.70  Aligned_cols=104  Identities=15%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.|+ |.+|+++++.|...|. ++++++.+.-.              ....|.+    .+.+.. ..++..+...
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~  110 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR  110 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence            568999996 9999999999999995 67777655411              1112222    222222 2344555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      + +++.+.++++++|+||.+....  ..-..+-+++.+.+ ++ +|+.+.
T Consensus       111 i-~~~~~~~~~~~~DiVi~~~D~~--~~r~~ln~~~~~~~-ip-~v~~~~  155 (245)
T PRK05690        111 L-DDDELAALIAGHDLVLDCTDNV--ATRNQLNRACFAAK-KP-LVSGAA  155 (245)
T ss_pred             C-CHHHHHHHHhcCCEEEecCCCH--HHHHHHHHHHHHhC-CE-EEEeee
Confidence            5 4556778889999999987654  33344666778876 44 555443

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.57  E-value=0.0009  Score=51.39  Aligned_cols=95  Identities=21%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh---HHHHHHh-cCcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH---ESLVKAI-KQVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~-~~~d~   79 (157)
                      .+++|.||+|.+|..+++.+...|. +|++++++     +++.+.+.+...  ... ..|..+.   +.+.++. .++|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s-----~~~~~~~~~~lG--a~~-vi~~~~~~~~~~i~~~~~~gvd~  227 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS-----DEKCQLLKSELG--FDA-AINYKTDNVAERLRELCPEGVDV  227 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHhcC--CcE-EEECCCCCHHHHHHHHCCCCceE
Confidence            6899999999999999998888898 79988877     555555443111  211 1222222   2233322 26899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +++++|...   ....++.+...   ++++.++.
T Consensus       228 vid~~g~~~---~~~~~~~l~~~---G~iv~~G~  255 (345)
T cd08293         228 YFDNVGGEI---SDTVISQMNEN---SHIILCGQ  255 (345)
T ss_pred             EEECCCcHH---HHHHHHHhccC---CEEEEEee
Confidence            999888642   34455555554   47887764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.56  E-value=0.00085  Score=51.57  Aligned_cols=96  Identities=11%  Similarity=0.120  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCCh----HHHHHHh-cCc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNH----ESLVKAI-KQV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~----~~~~~~~-~~~   77 (157)
                      ..+++|+||+|.+|..+++.+...|.+|++++++     .++.+.+++ +.   ... ..|..+.    +.+.+.. .++
T Consensus       152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~-----~~~~~~~~~~lG---a~~-vi~~~~~~~~~~~i~~~~~~gv  222 (338)
T cd08295         152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS-----DEKVDLLKNKLG---FDD-AFNYKEEPDLDAALKRYFPNGI  222 (338)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHhcC---Cce-eEEcCCcccHHHHHHHhCCCCc
Confidence            4689999999999999999888899999988877     556655544 32   211 1232222    2222222 268


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |+++++.|..   .....++.+...   ++++.++..
T Consensus       223 d~v~d~~g~~---~~~~~~~~l~~~---G~iv~~G~~  253 (338)
T cd08295         223 DIYFDNVGGK---MLDAVLLNMNLH---GRIAACGMI  253 (338)
T ss_pred             EEEEECCCHH---HHHHHHHHhccC---cEEEEeccc
Confidence            9999998852   344555555554   478777643

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.56  E-value=0.00054  Score=55.74  Aligned_cols=81  Identities=22%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--------cC-CCeEEE-EccCCChHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--------KN-LGVNLV-IGDVLNHESL   70 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~-~~v~~~-~~D~~~~~~~   70 (157)
                      |.+.|+|.|+| +|.+|..++..|+..|++|++.+++     +++.+.+.+.        .. ...... .+.+.-.+++
T Consensus         1 ~~~i~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~   74 (495)
T PRK07531          1 MTMIMKAACIG-GGVIGGGWAARFLLAGIDVAVFDPH-----PEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASL   74 (495)
T ss_pred             CCCcCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCC-----HHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCH
Confidence            44346899998 6999999999999999999999998     4443322110        00 000000 0112222345


Q ss_pred             HHHhcCcCEEEEcCCCc
Q 040431           71 VKAIKQVDVVISTVGHT   87 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~   87 (157)
                      .++++++|+|+-++...
T Consensus        75 ~ea~~~aD~Vieavpe~   91 (495)
T PRK07531         75 AEAVAGADWIQESVPER   91 (495)
T ss_pred             HHHhcCCCEEEEcCcCC
Confidence            56778999999776654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.56  E-value=0.0012  Score=50.63  Aligned_cols=73  Identities=23%  Similarity=0.345  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++|+|.|+ |.+|..+++.|...| .+|++++|+     +++...+.+....  .     ..+.+++.+.+..+|+||.
T Consensus       178 ~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~-----~~ra~~la~~~g~--~-----~~~~~~~~~~l~~aDvVi~  244 (311)
T cd05213         178 GKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRT-----YERAEELAKELGG--N-----AVPLDELLELLNEADVVIS  244 (311)
T ss_pred             CCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHHcCC--e-----EEeHHHHHHHHhcCCEEEE
Confidence            578999996 999999999999876 678889888     6665444333222  1     2233457777888999999


Q ss_pred             cCCCcch
Q 040431           83 TVGHTLL   89 (157)
Q Consensus        83 ~a~~~~~   89 (157)
                      +.+....
T Consensus       245 at~~~~~  251 (311)
T cd05213         245 ATGAPHY  251 (311)
T ss_pred             CCCCCch
Confidence            9998764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.55  E-value=0.0039  Score=46.10  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.| .|++|+++++.|...|. ++++++.+.-.              ....|.+    .+.+.. ...+..+...
T Consensus        24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~  102 (240)
T TIGR02355        24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK  102 (240)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence            45899999 59999999999999995 67777765411              1112222    222222 2234444433


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      + +.+.+.+++++.|+||.+.....  ....+-+++.+.+ + .+|+-++.
T Consensus       103 i-~~~~~~~~~~~~DlVvd~~D~~~--~r~~ln~~~~~~~-i-p~v~~~~~  148 (240)
T TIGR02355       103 L-DDAELAALIAEHDIVVDCTDNVE--VRNQLNRQCFAAK-V-PLVSGAAI  148 (240)
T ss_pred             C-CHHHHHHHhhcCCEEEEcCCCHH--HHHHHHHHHHHcC-C-CEEEEEec
Confidence            3 45667788899999999887653  3344556778876 4 45565543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.55  E-value=0.0007  Score=54.18  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-CcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-QVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~~d~vv~   82 (157)
                      .++++|+|+++ +|.+.++.|.+.|++|.+.+++.... ....+.   +...++.+..++  ++..+   +. .+|.||.
T Consensus         5 ~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~-~~~~~~---l~~~g~~~~~~~--~~~~~---~~~~~d~vV~   74 (447)
T PRK02472          5 NKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSE-NPEAQE---LLEEGIKVICGS--HPLEL---LDEDFDLMVK   74 (447)
T ss_pred             CCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccc-hhHHHH---HHhcCCEEEeCC--CCHHH---hcCcCCEEEE
Confidence            57899999876 99999999999999999988764321 111222   223345554432  22222   23 4899999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      ++|+..
T Consensus        75 s~gi~~   80 (447)
T PRK02472         75 NPGIPY   80 (447)
T ss_pred             CCCCCC
Confidence            999875

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=97.54  E-value=0.0035  Score=47.06  Aligned_cols=106  Identities=14%  Similarity=0.271  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCC---CCC-----------CchhhHh----hhhcCCCeEEEEc-c
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVREST---ISG-----------PSKSQLL----DHFKNLGVNLVIG-D   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~---~~~-----------~~~~~~~----~~~~~~~v~~~~~-D   63 (157)
                      ..+|+|.| .|++|+++++.|...| .++++++.+.-   +.+           ..|.+.+    .+. ++.+.+... +
T Consensus        30 ~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~  107 (268)
T PRK15116         30 DAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDD  107 (268)
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEec
Confidence            46899999 5999999999999999 57888876631   110           1122222    222 233333322 2


Q ss_pred             CCChHHHHHHhc-CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           64 VLNHESLVKAIK-QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        64 ~~~~~~~~~~~~-~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ..+++.+.+++. ++|+||.+.....  .-..+.+.|.+.+ + .++..+..+
T Consensus       108 ~i~~e~~~~ll~~~~D~VIdaiD~~~--~k~~L~~~c~~~~-i-p~I~~gGag  156 (268)
T PRK15116        108 FITPDNVAEYMSAGFSYVIDAIDSVR--PKAALIAYCRRNK-I-PLVTTGGAG  156 (268)
T ss_pred             ccChhhHHHHhcCCCCEEEEcCCCHH--HHHHHHHHHHHcC-C-CEEEECCcc
Confidence            235666767775 6999999888643  3445778888876 4 455554443

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.54  E-value=0.00085  Score=53.07  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|.|| |=+|.-++++|..+| .+|++.+|.     .+++..+.+-..       +++...+++...+..+|+||.
T Consensus       178 ~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT-----~erA~~La~~~~-------~~~~~l~el~~~l~~~DvVis  244 (414)
T COG0373         178 DKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRT-----LERAEELAKKLG-------AEAVALEELLEALAEADVVIS  244 (414)
T ss_pred             cCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCC-----HHHHHHHHHHhC-------CeeecHHHHHHhhhhCCEEEE
Confidence            578999996 889999999999999 689999999     777776654432       455566778888899999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      ..+...+...+..+..+.+..  ++ .++--+++..+.++
T Consensus       245 sTsa~~~ii~~~~ve~a~~~r--~~-~livDiavPRdie~  281 (414)
T COG0373         245 STSAPHPIITREMVERALKIR--KR-LLIVDIAVPRDVEP  281 (414)
T ss_pred             ecCCCccccCHHHHHHHHhcc--cC-eEEEEecCCCCCCc
Confidence            988877666666666665553  33 34445555554433

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.54  E-value=0.0015  Score=49.70  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+|.|+| .|.+|..+++.|.+.|++|.+.+|+
T Consensus         1 M~Ig~IG-lG~mG~~la~~L~~~g~~V~~~dr~   32 (298)
T TIGR00872         1 MQLGLIG-LGRMGANIVRRLAKRGHDCVGYDHD   32 (298)
T ss_pred             CEEEEEc-chHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999 6999999999999999999999888

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.53  E-value=0.0007  Score=52.91  Aligned_cols=95  Identities=14%  Similarity=0.222  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCc---EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHP---TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~---v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |++|.|.||||++|+.+.+.++++ ..+   ++.+.......   +   ...+.+.  .....++.++++    +.++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~---~---~~~f~g~--~~~v~~~~~~~~----~~~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGG---A---APSFGGK--EGTLQDAFDIDA----LKKLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCC---c---ccccCCC--cceEEecCChhH----hcCCCE
Confidence            368999999999999999966665 444   66654432221   1   1122221  223334444443    367999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCc-cEEEeccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGAS-RGTLRTQK  114 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~-~~v~~Ss~  114 (157)
                      +|..++..   .+..+...+.+.| .+ .+|=.||.
T Consensus        69 vf~a~~~~---~s~~~~~~~~~aG-~~~~VID~Ss~  100 (369)
T PRK06598         69 IITCQGGD---YTNEVYPKLRAAG-WQGYWIDAAST  100 (369)
T ss_pred             EEECCCHH---HHHHHHHHHHhCC-CCeEEEECChH
Confidence            99888775   4677888887776 42 35555553

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.53  E-value=0.00043  Score=52.93  Aligned_cols=88  Identities=18%  Similarity=0.341  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCC-----CeEEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL-----GVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~-----~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      ||+|.|.| .|.+|..++..|.+.|++|.+++|+     +++.+.+......     +... ...+.-..+..+.++++|
T Consensus         1 mmkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D   73 (325)
T PRK00094          1 MMKIAVLG-AGSWGTALAIVLARNGHDVTLWARD-----PEQAAEINADRENPRYLPGIKL-PDNLRATTDLAEALADAD   73 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHcCcccccCCCCcC-CCCeEEeCCHHHHHhCCC
Confidence            35899999 5999999999999999999999987     4444433322100     0000 001111123444567889


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHH
Q 040431           79 VVISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~  101 (157)
                      +||-+....   ....+++.+..
T Consensus        74 ~vi~~v~~~---~~~~v~~~l~~   93 (325)
T PRK00094         74 LILVAVPSQ---ALREVLKQLKP   93 (325)
T ss_pred             EEEEeCCHH---HHHHHHHHHHh
Confidence            998887764   34455554443

>PRK10537 voltage-gated potassium channel; Provisional

Probab=97.52  E-value=0.002  Score=50.96  Aligned_cols=87  Identities=21%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      +.+++|+| .|-+|+.+++.|.++|.++++++.+.    .      ++....+..++.+|.+|++.++++ +++++.++-
T Consensus       240 k~HvII~G-~g~lg~~v~~~L~~~g~~vvVId~d~----~------~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~  308 (393)
T PRK10537        240 KDHFIICG-HSPLAINTYLGLRQRGQAVTVIVPLG----L------EHRLPDDADLIPGDSSDSAVLKKAGAARARAILA  308 (393)
T ss_pred             CCeEEEEC-CChHHHHHHHHHHHCCCCEEEEECch----h------hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEE
Confidence            35799999 58899999999999999998887541    1      112234678999999999998876 568999986


Q ss_pred             cCCCcchHHHHHHHHHHHHhc
Q 040431           83 TVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .....  .....++..+++.+
T Consensus       309 ~t~dD--~~Nl~ivL~ar~l~  327 (393)
T PRK10537        309 LRDND--ADNAFVVLAAKEMS  327 (393)
T ss_pred             cCCCh--HHHHHHHHHHHHhC
Confidence            66543  22334555566665

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.52  E-value=0.00064  Score=53.19  Aligned_cols=78  Identities=29%  Similarity=0.399  Sum_probs=52.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC----CCeEE-E---Ecc--CCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN----LGVNL-V---IGD--VLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~v~~-~---~~D--~~~~~~~~~~~   74 (157)
                      |+|.|.| +||+|.-.+--|.+.||+|++++.+     +.+.+.+.....    ++++- +   ..+  +.-..+.++++
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid-----~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~   74 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDID-----ESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAV   74 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCC-----HHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHH
Confidence            5899999 8999999999999999999999998     555554432211    11100 0   011  21223355667


Q ss_pred             cCcCEEEEcCCCcc
Q 040431           75 KQVDVVISTVGHTL   88 (157)
Q Consensus        75 ~~~d~vv~~a~~~~   88 (157)
                      +.+|++|-+.|...
T Consensus        75 ~~adv~fIavgTP~   88 (414)
T COG1004          75 KDADVVFIAVGTPP   88 (414)
T ss_pred             hcCCEEEEEcCCCC
Confidence            78999998888765

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.51  E-value=0.0012  Score=50.88  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhc---CCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFK---NLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .+||.|+|| |.+|+.++..++..| .+++.++++........++. ....   .....+.     ...+.+ .++++|+
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl-~~~~~~~~~~~~i~-----~~~d~~-~l~~ADi   76 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDL-KHFSTLVGSNINIL-----GTNNYE-DIKDSDV   76 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHH-hhhccccCCCeEEE-----eCCCHH-HhCCCCE
Confidence            569999997 999999999999888 68889998744321111111 1110   1111111     112233 5689999


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ||..+|...             ....+.+++.+.+......++.+|
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs  122 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT  122 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            999997754             122455666666665223355554

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.51  E-value=0.0009  Score=53.34  Aligned_cols=84  Identities=20%  Similarity=0.264  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |.+|..+++.|...| .+|++++|+     .+++..+......  ..+     +.+++.+.+.++|+||.
T Consensus       180 ~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs-----~~ra~~la~~~g~--~~i-----~~~~l~~~l~~aDvVi~  246 (417)
T TIGR01035       180 GKKALLIGA-GEMGELVAKHLLRKGVGKILIANRT-----YERAEDLAKELGG--EAV-----KFEDLEEYLAEADIVIS  246 (417)
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCC-----HHHHHHHHHHcCC--eEe-----eHHHHHHHHhhCCEEEE
Confidence            468999995 999999999999999 789999988     5554433322111  111     23467777889999999


Q ss_pred             cCCCcchHHHHHHHHHHH
Q 040431           83 TVGHTLLADQVKIIAAIK  100 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~  100 (157)
                      +.+..........++.+.
T Consensus       247 aT~s~~~ii~~e~l~~~~  264 (417)
T TIGR01035       247 STGAPHPIVSKEDVERAL  264 (417)
T ss_pred             CCCCCCceEcHHHHHHHH
Confidence            988765333444444443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.49  E-value=0.001  Score=51.62  Aligned_cols=100  Identities=16%  Similarity=0.071  Sum_probs=56.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhH-hhh--hc-CCC-eEEEEccCCChHHHHHHhcCcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQL-LDH--FK-NLG-VNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~-~~~--~~-~~~-v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      ++|.|+|+||++|++|++.|.+++ .++..+..+.... ...... ...  +. ..+ +.-+.+.-.+++    .+.++|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D   75 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSA-GKRYGEAVKWIEPGDMPEYVRDLPIVEPEPV----ASKDVD   75 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhc-CCcchhhccccccCCCccccceeEEEeCCHH----HhccCC
Confidence            479999999999999999998876 5887774432211 111110 000  00 000 111111111222    346799


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|+.+.+..   ....+.+.+.+.| . ++|-.|+.
T Consensus        76 vVf~a~p~~---~s~~~~~~~~~~G-~-~VIDlsg~  106 (341)
T TIGR00978        76 IVFSALPSE---VAEEVEPKLAEAG-K-PVFSNASN  106 (341)
T ss_pred             EEEEeCCHH---HHHHHHHHHHHCC-C-EEEECChh
Confidence            999888765   3445667777776 3 46666654

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=97.49  E-value=0.0026  Score=46.74  Aligned_cols=110  Identities=18%  Similarity=0.286  Sum_probs=70.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhhHhhh---hcCCCeEEEEccC-
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQLLDH---FKNLGVNLVIGDV-   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~~~~~---~~~~~v~~~~~D~-   64 (157)
                      +.+|+|.|. |++|++.+++|...|. ++++++-+.-.              ....|.+.+++   ..++.+++...|. 
T Consensus        30 ~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          30 QAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             hCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            458999995 9999999999999995 56666654411              11223332222   1245565655443 


Q ss_pred             CChHHHHHHhc-CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccC
Q 040431           65 LNHESLVKAIK-QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSL  120 (157)
Q Consensus        65 ~~~~~~~~~~~-~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~  120 (157)
                      -.++.+++++. ++|.||++.-..  ..-..|+..|...+ .   -++||.++.+..
T Consensus       109 ~t~en~~~~~~~~~DyvIDaiD~v--~~Kv~Li~~c~~~k-i---~vIss~Gag~k~  159 (263)
T COG1179         109 ITEENLEDLLSKGFDYVIDAIDSV--RAKVALIAYCRRNK-I---PVISSMGAGGKL  159 (263)
T ss_pred             hCHhHHHHHhcCCCCEEEEchhhh--HHHHHHHHHHHHcC-C---CEEeeccccCCC
Confidence            57788888876 699999876654  33446777788776 3   466676665443

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.49  E-value=0.00055  Score=47.85  Aligned_cols=56  Identities=23%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+++.+|..+++.|.+.|.+|+++.|..                             +++.+.+..+|+||..
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-----------------------------~~l~~~l~~aDiVIsa   94 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-----------------------------KNLKEHTKQADIVIVA   94 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-----------------------------hhHHHHHhhCCEEEEc
Confidence            57999999866789999999999999988887761                             2455667778888887


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      .+...
T Consensus        95 t~~~~   99 (168)
T cd01080          95 VGKPG   99 (168)
T ss_pred             CCCCc
Confidence            77754

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02602 lactate dehydrogenase

Probab=97.49  E-value=0.00099  Score=51.86  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=59.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +||.|+|+ |.+|+.++..|+..+.  ++..++.+.........+ +.+..  .....+...  .|.+    .++++|+|
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D-L~~~~~~~~~~~i~~~--~dy~----~~~daDiV  109 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD-LQHAAAFLPRTKILAS--TDYA----VTAGSDLC  109 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH-HHhhhhcCCCCEEEeC--CCHH----HhCCCCEE
Confidence            69999996 9999999999988873  788998874322111111 11111  111222221  1222    36899999


Q ss_pred             EEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           81 ISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        81 v~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      |..||...             ....+.+.+.+.+.+....++.+|
T Consensus       110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            99999864             222445556666654234455554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.47  E-value=0.00063  Score=51.80  Aligned_cols=92  Identities=14%  Similarity=0.202  Sum_probs=60.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|. |.+|+.++..|...|.+|++++|+     +++.+...+.   +..++     +.+++.+.++++|+||+.
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~-----~~~~~~~~~~---G~~~~-----~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKALGANVTVGARK-----SAHLARITEM---GLSPF-----HLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHc---CCeee-----cHHHHHHHhCCCCEEEEC
Confidence            579999995 889999999999999999999988     4443333222   22222     234567778899999998


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++...  .....++.+..   ...++-+++.
T Consensus       218 ~p~~~--i~~~~l~~~~~---g~vIIDla~~  243 (296)
T PRK08306        218 IPALV--LTKEVLSKMPP---EALIIDLASK  243 (296)
T ss_pred             CChhh--hhHHHHHcCCC---CcEEEEEccC
Confidence            75431  12333333332   2356656653

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.47  E-value=0.00047  Score=52.14  Aligned_cols=76  Identities=22%  Similarity=0.231  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCC--Ce-EEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNL--GV-NLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~--~v-~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++++|.|| |+.|++++..|.+.|. +|++++|+     .++.+.+.+....  +. .....+   ...+.+.+..+|+
T Consensus       127 ~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~-----~~ka~~La~~~~~~~~~~~~~~~~---~~~~~~~~~~~di  197 (283)
T PRK14027        127 LDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLD-----TSRAQALADVINNAVGREAVVGVD---ARGIEDVIAAADG  197 (283)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCC-----HHHHHHHHHHHhhccCcceEEecC---HhHHHHHHhhcCE
Confidence            468999995 8999999999999995 68899888     6666655432211  11 111122   2223334457899


Q ss_pred             EEEcCCCcc
Q 040431           80 VISTVGHTL   88 (157)
Q Consensus        80 vv~~a~~~~   88 (157)
                      |||......
T Consensus       198 vINaTp~Gm  206 (283)
T PRK14027        198 VVNATPMGM  206 (283)
T ss_pred             EEEcCCCCC
Confidence            999877653

>PRK08328 hypothetical protein; Provisional

Probab=97.46  E-value=0.0055  Score=44.99  Aligned_cols=108  Identities=17%  Similarity=0.273  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCC-chhh----Hhhhhc-CCCeEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGP-SKSQ----LLDHFK-NLGVNLVIG   62 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~-~~~~----~~~~~~-~~~v~~~~~   62 (157)
                      ..+|+|.| .|++|+++++.|...|. ++++++.+.-.              ... .+.+    .+.+.. +..+..+..
T Consensus        27 ~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~  105 (231)
T PRK08328         27 KAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG  105 (231)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence            46899999 59999999999999995 67777755311              001 1111    122222 234455555


Q ss_pred             cCCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           63 DVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        63 D~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      .+ +++.+.+++++.|+||.+.-...  .-..+-++|.+.+ + .+|+.+..+.+
T Consensus       106 ~~-~~~~~~~~l~~~D~Vid~~d~~~--~r~~l~~~~~~~~-i-p~i~g~~~g~~  155 (231)
T PRK08328        106 RL-SEENIDEVLKGVDVIVDCLDNFE--TRYLLDDYAHKKG-I-PLVHGAVEGTY  155 (231)
T ss_pred             cC-CHHHHHHHHhcCCEEEECCCCHH--HHHHHHHHHHHcC-C-CEEEEeeccCE
Confidence            55 45567778899999999887743  2233445677776 4 46666554443

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.46  E-value=0.0014  Score=52.53  Aligned_cols=102  Identities=11%  Similarity=-0.014  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-------CC--cEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-------GH--PTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-------g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~   72 (157)
                      .-||.|+|++|.+|.+++-.|+..       +.  +++.++++......+..++..-.  ...++.+...   +.    +
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~---~y----e  172 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID---PY----E  172 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC---CH----H
Confidence            458999999999999999999987       53  78888887443322222222111  0112222222   22    3


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHH-hcCCccEEEec
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKE-AEGASRGTLRT  112 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~-~~~~~~~v~~S  112 (157)
                      .++++|+||..||...             ....+.+.+.+.+ .+....++.+|
T Consensus       173 ~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs  226 (444)
T PLN00112        173 VFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG  226 (444)
T ss_pred             HhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence            4689999999999965             3335667777777 44234555554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.46  E-value=0.00033  Score=53.02  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcC---CCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKN---LGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++++|.|+ |+.|++++..|.+.|. +|++++|+     .++.+.+.+...   ..+.+...     +++.+.+.++|+
T Consensus       127 ~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~-----~~ka~~la~~l~~~~~~~~~~~~-----~~~~~~~~~aDi  195 (284)
T PRK12549        127 LERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVD-----PARAAALADELNARFPAARATAG-----SDLAAALAAADG  195 (284)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHHHHhhCCCeEEEec-----cchHhhhCCCCE
Confidence            468999995 8899999999999996 79999998     666665543211   12222221     233445678999


Q ss_pred             EEEcCCCc
Q 040431           80 VISTVGHT   87 (157)
Q Consensus        80 vv~~a~~~   87 (157)
                      |||.....
T Consensus       196 VInaTp~G  203 (284)
T PRK12549        196 LVHATPTG  203 (284)
T ss_pred             EEECCcCC
Confidence            99985443

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.45  E-value=0.002  Score=46.13  Aligned_cols=108  Identities=20%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.|+ |.+|.++++.|...|. ++++++.+.-.              ....|.+    .+++.. ...++.+...
T Consensus        21 ~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~   99 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD   99 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence            468999996 6699999999999996 58888765311              0111222    233332 2345555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      +++  ...+.+.++|+||.+...  ......+-+.|.+.+ + .+++.++.+-++
T Consensus       100 ~~~--~~~~~~~~~dvVi~~~~~--~~~~~~ln~~c~~~~-i-p~i~~~~~G~~G  148 (197)
T cd01492         100 ISE--KPEEFFSQFDVVVATELS--RAELVKINELCRKLG-V-KFYATGVHGLFG  148 (197)
T ss_pred             ccc--cHHHHHhCCCEEEECCCC--HHHHHHHHHHHHHcC-C-CEEEEEecCCEE
Confidence            542  245667899999987654  344455667788887 4 477777665554

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.45  E-value=0.0018  Score=49.20  Aligned_cols=96  Identities=13%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHh-cCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAI-KQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~-~~~d~   79 (157)
                      ..+++|.||+|.+|..+++.+...|.+|++++++     +++.+.+++..   +.. ..|..+++   .+.+.. .++|+
T Consensus       144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s-----~~~~~~l~~~G---a~~-vi~~~~~~~~~~v~~~~~~gvd~  214 (329)
T cd08294         144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS-----DDKVAWLKELG---FDA-VFNYKTVSLEEALKEAAPDGIDC  214 (329)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcC---CCE-EEeCCCccHHHHHHHHCCCCcEE
Confidence            3589999999999999999999999999988877     66666655432   221 12333322   232222 25899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++++.|..   .....++.+...   ++++.++..
T Consensus       215 vld~~g~~---~~~~~~~~l~~~---G~iv~~g~~  243 (329)
T cd08294         215 YFDNVGGE---FSSTVLSHMNDF---GRVAVCGSI  243 (329)
T ss_pred             EEECCCHH---HHHHHHHhhccC---CEEEEEcch
Confidence            99988852   234445555443   478877654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK06849 hypothetical protein; Provisional

Probab=97.44  E-value=0.0007  Score=53.29  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |..+|+|||||+...+|..+++.|.+.|++|++++..+
T Consensus         1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~   38 (389)
T PRK06849          1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLK   38 (389)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            66689999999999999999999999999999998773

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.43  E-value=0.0027  Score=49.02  Aligned_cols=95  Identities=17%  Similarity=0.259  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+|+|+|+ |++|...++.+...|.+|++++|+     +++.+..+++...  .++  |-+|++.++++-+.+|+++++
T Consensus       167 G~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~-----~~K~e~a~~lGAd--~~i--~~~~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         167 GKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRS-----EEKLELAKKLGAD--HVI--NSSDSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCC-----hHHHHHHHHhCCc--EEE--EcCCchhhHHhHhhCcEEEEC
Confidence            468999997 599999998888899999999999     7777666655321  122  222555555555459999999


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++ ..  ...+.+++++..|   +++.++-.
T Consensus       237 v~-~~--~~~~~l~~l~~~G---~~v~vG~~  261 (339)
T COG1064         237 VG-PA--TLEPSLKALRRGG---TLVLVGLP  261 (339)
T ss_pred             CC-hh--hHHHHHHHHhcCC---EEEEECCC
Confidence            99 32  2344555555544   77777654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.43  E-value=0.00038  Score=52.54  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCe-EEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGV-NLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++|.|| |+.+++++..|++.| .+|++++|.     .++.+.+.+...... .....+..+.+...    ..|+||
T Consensus       126 ~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt-----~~ra~~La~~~~~~~~~~~~~~~~~~~~~~----~~dliI  195 (283)
T COG0169         126 GKRVLILGA-GGAARAVAFALAEAGAKRITVVNRT-----RERAEELADLFGELGAAVEAAALADLEGLE----EADLLI  195 (283)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHHhhhccccccccccccccccc----ccCEEE
Confidence            368999995 888999999999999 579999999     777766654433211 11122222222211    579999


Q ss_pred             EcCCCcc
Q 040431           82 STVGHTL   88 (157)
Q Consensus        82 ~~a~~~~   88 (157)
                      |..+...
T Consensus       196 NaTp~Gm  202 (283)
T COG0169         196 NATPVGM  202 (283)
T ss_pred             ECCCCCC
Confidence            8877754

>PLN00203 glutamyl-tRNA reductase

Probab=97.42  E-value=0.0013  Score=53.67  Aligned_cols=87  Identities=20%  Similarity=0.288  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++|+|+|+ |.+|..++++|...|. +|++++|+     .++.+.+..... ++...   +...+++.+.+.++|+||.
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs-----~era~~La~~~~-g~~i~---~~~~~dl~~al~~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRS-----EERVAALREEFP-DVEII---YKPLDEMLACAAEADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCC-----HHHHHHHHHHhC-CCceE---eecHhhHHHHHhcCCEEEE
Confidence            578999996 9999999999999996 69999988     666665543321 22221   1233456677889999999


Q ss_pred             cCCCcchHHHHHHHHHHH
Q 040431           83 TVGHTLLADQVKIIAAIK  100 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~  100 (157)
                      +.+..........++.+.
T Consensus       336 AT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        336 STSSETPLFLKEHVEALP  353 (519)
T ss_pred             ccCCCCCeeCHHHHHHhh
Confidence            887766444555565554

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.42  E-value=0.0014  Score=49.48  Aligned_cols=92  Identities=25%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCch-hhHhhhhc----------CCCeEEEEccCCChHHHHHH
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK-SQLLDHFK----------NLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~----------~~~v~~~~~D~~~~~~~~~~   73 (157)
                      ++|.++| .|..|..++.+|++.||+|++.+|+     +++ .+.+....          -...+++-.=+.|.+++++.
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~-----~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V   74 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRT-----PEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAV   74 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCC-----hhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHH
Confidence            4788999 8999999999999999999999999     444 33332210          12345555555788888877


Q ss_pred             hcCcC----------EEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           74 IKQVD----------VVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        74 ~~~~d----------~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +.+.+          ++|+...+ ....++.+...+.+.|
T Consensus        75 ~~g~~g~~~~~~~G~i~IDmSTi-sp~~a~~~a~~~~~~G  113 (286)
T COG2084          75 LFGENGLLEGLKPGAIVIDMSTI-SPETARELAAALAAKG  113 (286)
T ss_pred             HhCccchhhcCCCCCEEEECCCC-CHHHHHHHHHHHHhcC
Confidence            75322          34444433 3666788888888876

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.41  E-value=0.0015  Score=52.16  Aligned_cols=83  Identities=20%  Similarity=0.272  Sum_probs=57.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |.+|..+++.|...|. +|++.+|+     ++++..+......       +..+.+++.+.+.++|+||.
T Consensus       182 ~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~-----~~ra~~la~~~g~-------~~~~~~~~~~~l~~aDvVI~  248 (423)
T PRK00045        182 GKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRT-----LERAEELAEEFGG-------EAIPLDELPEALAEADIVIS  248 (423)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCC-----HHHHHHHHHHcCC-------cEeeHHHHHHHhccCCEEEE
Confidence            478999995 9999999999999997 78888888     5555433322221       22233556677789999999


Q ss_pred             cCCCcchHHHHHHHHHH
Q 040431           83 TVGHTLLADQVKIIAAI   99 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~   99 (157)
                      +.+......+...++.+
T Consensus       249 aT~s~~~~i~~~~l~~~  265 (423)
T PRK00045        249 STGAPHPIIGKGMVERA  265 (423)
T ss_pred             CCCCCCcEEcHHHHHHH
Confidence            98876533334444443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.41  E-value=0.00043  Score=52.37  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|.|.|+ |.+|..++..|...|++|++.+++.
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            578999995 9999999999999999999999883

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.41  E-value=0.0018  Score=48.71  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=27.5

Q ss_pred             CCCC--CeEEEEcCCCcchHHHHHHHHhC--CCcEEEE-ecC
Q 040431            1 MASK--SKILFIGGTGYIGKFTVEASVKA--GHPTFVL-VRE   37 (157)
Q Consensus         1 M~~~--~~ilitGatG~iG~~l~~~l~~~--g~~v~~~-~r~   37 (157)
                      |++|  ++|.|.| .|.+|+.+++.|.+.  ++++..+ +|+
T Consensus         1 ~~~m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~   41 (271)
T PRK13302          1 MSSRPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRD   41 (271)
T ss_pred             CCCCCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence            5444  6899999 699999999999873  6777644 444

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00092  Score=52.14  Aligned_cols=88  Identities=23%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH-HHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE-SLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~~~~~d~vv   81 (157)
                      +++||+.| +||+.+.+++.|.+++ .+|++.+|.     -..++.+.  ...+++.+..|+.+++ .+.+..+..|.++
T Consensus         2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~-----~~~~~~~~--~~~~~~av~ldv~~~~~~L~~~v~~~D~vi   73 (445)
T KOG0172|consen    2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRT-----LKDAEALV--KGINIKAVSLDVADEELALRKEVKPLDLVI   73 (445)
T ss_pred             CcceEEec-CccccchHHHHHhhcCCceEEEehhh-----HHHHHHHh--cCCCccceEEEccchHHHHHhhhcccceee
Confidence            57899999 6999999999999876 578877776     33333332  2345899999999988 8999999999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHh
Q 040431           82 STVGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~  102 (157)
                      .+.....   ...+.+.|+..
T Consensus        74 SLlP~t~---h~lVaK~~i~~   91 (445)
T KOG0172|consen   74 SLLPYTF---HPLVAKGCIIT   91 (445)
T ss_pred             eeccchh---hHHHHHHHHHh
Confidence            9888763   33455555554

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.38  E-value=0.0028  Score=49.86  Aligned_cols=105  Identities=17%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC--------------CCCCchhhH----hhhhcC-CCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST--------------ISGPSKSQL----LDHFKN-LGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~--------------~~~~~~~~~----~~~~~~-~~v~~~~~D   63 (157)
                      ..+|+|.| .|++|+++++.|...|. ++++++++.-              +....|.+.    +.+..+ ..+..+...
T Consensus       135 ~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        135 EARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             cCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            46899998 58999999999999996 6888887621              111233332    222221 234444444


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      + +.+.+.++++++|+||++.....  .-..+-++|.+.+ + .+|+.+..
T Consensus       214 ~-~~~~~~~~~~~~D~Vv~~~d~~~--~r~~ln~~~~~~~-i-p~i~~~~~  259 (376)
T PRK08762        214 V-TSDNVEALLQDVDVVVDGADNFP--TRYLLNDACVKLG-K-PLVYGAVF  259 (376)
T ss_pred             C-ChHHHHHHHhCCCEEEECCCCHH--HHHHHHHHHHHcC-C-CEEEEEec
Confidence            4 34567778889999999887753  2234566678876 3 46666543

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.38  E-value=0.0053  Score=47.02  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |||.|.|+ |.+|..++..|+..|  .+|.+++++......+..+ +....  .........   |.    +.++++|++
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~d-l~~~~~~~~~~~i~~~---d~----~~l~~aDiV   71 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMD-LAHGTPFVKPVRIYAG---DY----ADCKGADVV   71 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHH-HHccccccCCeEEeeC---CH----HHhCCCCEE
Confidence            47999997 999999999999999  5899999884322111111 11110  011222222   22    237899999


Q ss_pred             EEcCCCcc
Q 040431           81 ISTVGHTL   88 (157)
Q Consensus        81 v~~a~~~~   88 (157)
                      |..++...
T Consensus        72 iita~~~~   79 (308)
T cd05292          72 VITAGANQ   79 (308)
T ss_pred             EEccCCCC
Confidence            99999854

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=97.37  E-value=0.0023  Score=49.08  Aligned_cols=106  Identities=21%  Similarity=0.239  Sum_probs=68.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhh----Hhhhhc-CCCeEEEEccCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQ----LLDHFK-NLGVNLVIGDVL   65 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~----~~~~~~-~~~v~~~~~D~~   65 (157)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.-.              ....|.+    .+.+.. ..++..+..++.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            5899995 9999999999999995 67777765411              0112222    223332 245667777787


Q ss_pred             ChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           66 NHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        66 ~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      +.+...+.+++.|+||...-..  ..-..+-+.|.+.+ + .+|..++.+.
T Consensus        80 ~~~~~~~f~~~~DvVv~a~Dn~--~ar~~in~~c~~~~-i-p~I~~gt~G~  126 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALDNL--AARRHVNKMCLAAD-V-PLIESGTTGF  126 (312)
T ss_pred             CccchHHHHhcCCEEEECCCCH--HHHHHHHHHHHHCC-C-CEEEEecCcc
Confidence            6544456788999999887653  33444666677776 3 4666665554

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.37  E-value=0.0012  Score=51.23  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             CCC-CCeEEEEcCCCcchHHHHHHHHhC-CCc---EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc
Q 040431            1 MAS-KSKILFIGGTGYIGKFTVEASVKA-GHP---TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         1 M~~-~~~ilitGatG~iG~~l~~~l~~~-g~~---v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |+. .++|.|.||||++|+.+++.|.++ ..+   +..+....+..  .+.    .+...++.+...   |+++    +.
T Consensus         1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saG--k~~----~~~~~~l~v~~~---~~~~----~~   67 (347)
T PRK06728          1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAG--KTV----QFKGREIIIQEA---KINS----FE   67 (347)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCC--CCe----eeCCcceEEEeC---CHHH----hc
Confidence            553 469999999999999999999854 455   65555442221  111    122222333333   3333    36


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +.|++|..++..   ....+...+.+.|  ..+|=.|+.-
T Consensus        68 ~~Divf~a~~~~---~s~~~~~~~~~~G--~~VID~Ss~f  102 (347)
T PRK06728         68 GVDIAFFSAGGE---VSRQFVNQAVSSG--AIVIDNTSEY  102 (347)
T ss_pred             CCCEEEECCChH---HHHHHHHHHHHCC--CEEEECchhh
Confidence            789999888765   4677888777776  3566666643

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=97.37  E-value=0.0031  Score=47.33  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +.||.|.||.|+||+.|...|..+.  .+....+-...   +--.   .++.+-+-......++-+++++++++++|+||
T Consensus        28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~---~GVa---aDlSHI~T~s~V~g~~g~~~L~~al~~advVv  101 (345)
T KOG1494|consen   28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANT---PGVA---ADLSHINTNSSVVGFTGADGLENALKGADVVV  101 (345)
T ss_pred             cceEEEEecCCccCccHHHHHhcCcccceeeeeecccC---Cccc---ccccccCCCCceeccCChhHHHHHhcCCCEEE
Confidence            4689999999999999887665432  12333332211   1111   11111122222344556789999999999999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      --||...             -...+.+..++.+.--...+.++|
T Consensus       102 IPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs  145 (345)
T KOG1494|consen  102 IPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS  145 (345)
T ss_pred             ecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence            9999976             122566777766653123344443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.37  E-value=0.0053  Score=44.28  Aligned_cols=86  Identities=19%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|.|| |.+|..-++.|++.|.+|++++....    ..+..+.+  ..++.++..++...     .+.+++.||-.
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~----~~l~~l~~--~~~i~~~~~~~~~~-----dl~~~~lVi~a   76 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE----SELTLLAE--QGGITWLARCFDAD-----ILEGAFLVIAA   76 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC----HHHHHHHH--cCCEEEEeCCCCHH-----HhCCcEEEEEC
Confidence            578999996 99999999999999999999875421    22222221  23688888877532     25678888755


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .+.  ......+...+++.+
T Consensus        77 t~d--~~ln~~i~~~a~~~~   94 (205)
T TIGR01470        77 TDD--EELNRRVAHAARARG   94 (205)
T ss_pred             CCC--HHHHHHHHHHHHHcC
Confidence            554  334567777787765

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.37  E-value=0.00062  Score=51.58  Aligned_cols=33  Identities=36%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      +|+|.|.| .|.+|+.+++.|.+.|++|++.+|+
T Consensus         2 ~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~   34 (296)
T PRK11559          2 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRN   34 (296)
T ss_pred             CceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            57899999 6999999999999999999998887

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.37  E-value=0.0015  Score=42.96  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhC-CCcEEEE-ecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            6 KILFIGGTGYIGKFTVEASVKA-GHPTFVL-VRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ++.|+|++|.+|..+++.|.+. ++++..+ +++.+.  ..+.   ... ...+..+..+..+.+.+.  ..++|+||.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~--~~~~---~~~-~~~~~~~~~~~~~~~~~~--~~~~DvV~~~   72 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSA--GKRV---SEA-GPHLKGEVVLELEPEDFE--ELAVDIVFLA   72 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhc--CcCH---HHH-CcccccccccccccCChh--hcCCCEEEEc
Confidence            5889999999999999999995 7788877 433211  1111   111 122211111112222332  2478999988


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      .+..........+....+.|  ..++-+||.-
T Consensus        73 ~~~~~~~~~~~~~~~~~~~g--~~viD~s~~~  102 (122)
T smart00859       73 LPHGVSKEIAPLLPKAAEAG--VKVIDLSSAF  102 (122)
T ss_pred             CCcHHHHHHHHHHHhhhcCC--CEEEECCccc
Confidence            88764222221111112333  4666677643

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.37  E-value=0.0019  Score=49.34  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=57.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      |||.|.|+ |++|..++..|+..|+ +|++++...... ....-.+.+...  .......+.-..++.+ +.++|.||-.
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~-~g~a~d~~~~~~--~~~~~~~i~~t~d~~~-~~~aDiVIit   76 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIP-QGKALDMYEASP--VGGFDTKVTGTNNYAD-TANSDIVVIT   76 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChh-HHHHHhhhhhhh--ccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence            58999996 9999999999999886 899999853321 111100111100  0000111111111222 5789999999


Q ss_pred             CCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           84 VGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        84 a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +|...             ....+.+++.+.+.+....++.+|
T Consensus        77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t  118 (305)
T TIGR01763        77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS  118 (305)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            99643             233445555555554234455554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.36  E-value=0.0053  Score=47.04  Aligned_cols=75  Identities=15%  Similarity=0.314  Sum_probs=49.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhh--hhcC-CCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLD--HFKN-LGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~--~~~~-~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      ||.|.|+ |++|+.++..|+..+.  ++++++........+..++..  .+.. .++.+...|   .    +.++++|+|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~---y----~~~~~aDiv   72 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD---Y----DDCADADII   72 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC---H----HHhCCCCEE
Confidence            6899997 9999999999998874  799998874332122222111  1111 234444433   2    346899999


Q ss_pred             EEcCCCcc
Q 040431           81 ISTVGHTL   88 (157)
Q Consensus        81 v~~a~~~~   88 (157)
                      |..||...
T Consensus        73 vitaG~~~   80 (307)
T cd05290          73 VITAGPSI   80 (307)
T ss_pred             EECCCCCC
Confidence            99999843

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.36  E-value=0.0047  Score=47.27  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhh--hhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLD--HFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +||.|+|| |++|+.++-.|+.++  .++.+++......+....+...  .....++ .+.+| .+    -+.++++|+|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~-~i~~~-~~----y~~~~~aDiV   73 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDV-KITGD-GD----YEDLKGADIV   73 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCce-EEecC-CC----hhhhcCCCEE
Confidence            58999999 999999999997776  4899999884333112121111  1111122 22222 12    2346789999


Q ss_pred             EEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           81 ISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        81 v~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +-.||...             ....+.+.+.+.+.+ ..-++.+
T Consensus        74 vitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlV  116 (313)
T COG0039          74 VITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLV  116 (313)
T ss_pred             EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEE
Confidence            99999876             233556666666665 3334444

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.36  E-value=0.0022  Score=47.11  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC---c-EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH---P-TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~---~-v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      |+++++|.|.| +|.+|.+++..|.+.+.   + +++.+|+.    +++.+.+.+..  ++...    .|   ..+++++
T Consensus         1 ~m~~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~--~~~~~----~~---~~~~~~~   66 (245)
T PRK07634          1 MLKKHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSN----VEKLDQLQARY--NVSTT----TD---WKQHVTS   66 (245)
T ss_pred             CCCCCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCC----HHHHHHHHHHc--CcEEe----CC---hHHHHhc
Confidence            65578999999 69999999999998863   3 55555531    34444333221  22211    12   3344578


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHH
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~  101 (157)
                      +|+||.......   ...+++.+..
T Consensus        67 ~DiViiavp~~~---~~~v~~~l~~   88 (245)
T PRK07634         67 VDTIVLAMPPSA---HEELLAELSP   88 (245)
T ss_pred             CCEEEEecCHHH---HHHHHHHHHh
Confidence            899988877653   3444444443

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.36  E-value=0.0023  Score=49.40  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      ||+|.|.| .|.+|..++..|.+.|++|++++|+
T Consensus         2 ~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          2 MARICVLG-AGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             CceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecH
Confidence            67899999 6999999999999999999999986

>PRK14851 hypothetical protein; Provisional

Probab=97.36  E-value=0.0052  Score=51.83  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCC---CC-----------CCCchhhHh----hhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRES---TI-----------SGPSKSQLL----DHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~---~~-----------~~~~~~~~~----~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.| .|++|+++++.|...|. ++++++.+.   ++           ....|.+..    .+.+ ..+|+.+...
T Consensus        43 ~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~  121 (679)
T PRK14851         43 EAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG  121 (679)
T ss_pred             cCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            46899999 59999999999999995 566665443   11           111222222    2222 2356666667


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ++ ++.+.+++.++|+||++.-......-..+.+.|.+.+ ++ +|+.+
T Consensus       122 i~-~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~-iP-~i~~g  167 (679)
T PRK14851        122 IN-ADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKG-IP-VITAG  167 (679)
T ss_pred             CC-hHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCC-CC-EEEee
Confidence            74 5667888999999998876544444456777888887 54 55544

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.35  E-value=0.0024  Score=46.85  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH----hcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA----IKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~----~~~~d~   79 (157)
                      ..+++|+|+++ +|..+++.+...|.+|++++++     +++.+.+.+...   . ...|..+.+....+    -..+|.
T Consensus       135 ~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~---~-~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         135 GDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS-----DEKLELAKELGA---D-HVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC-----HHHHHHHHHhCC---c-eeccCCcCCHHHHHHHhcCCCCCE
Confidence            46899999988 9999999999999999998877     455554443321   1 11233333222222    136899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      ++++++..  ......++.+...   ++++.++....
T Consensus       205 vi~~~~~~--~~~~~~~~~l~~~---G~~v~~~~~~~  236 (271)
T cd05188         205 VIDAVGGP--ETLAQALRLLRPG---GRIVVVGGTSG  236 (271)
T ss_pred             EEECCCCH--HHHHHHHHhcccC---CEEEEEccCCC
Confidence            99998862  1244455555543   47888876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=97.35  E-value=0.0013  Score=50.31  Aligned_cols=80  Identities=13%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .+|.|.||||+.|..|++.|..+. .++..++-.+.                      .+   +.+..+++.++|++|.+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----------------------~~---~~~~~~~~~~~D~vFla   56 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----------------------KD---AAERAKLLNAADVAILC   56 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----------------------cC---cCCHhHhhcCCCEEEEC
Confidence            479999999999999999999985 36665543311                      01   11233455678888877


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .+..   ....++..+.+.+  .++|=+|+.
T Consensus        57 lp~~---~s~~~~~~~~~~g--~~VIDlSad   82 (310)
T TIGR01851        57 LPDD---AAREAVSLVDNPN--TCIIDASTA   82 (310)
T ss_pred             CCHH---HHHHHHHHHHhCC--CEEEECChH
Confidence            6554   3556666665555  357666653

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.34  E-value=0.0033  Score=49.10  Aligned_cols=106  Identities=13%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC---C-----------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST---I-----------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~---~-----------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.|+ |++|+++++.|...|. ++++++.+.-   +           ....|.+    .+.+.. ...++.+...
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~  106 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR  106 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence            468999995 9999999999999995 6778776641   1           1112222    222332 2344555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++ ++...++++++|+||.+.....  .-..+-++|.+.+ ++ +|+.+..+
T Consensus       107 i~-~~~~~~~~~~~DvVvd~~d~~~--~r~~~n~~c~~~~-ip-~v~~~~~g  153 (355)
T PRK05597        107 LT-WSNALDELRDADVILDGSDNFD--TRHLASWAAARLG-IP-HVWASILG  153 (355)
T ss_pred             cC-HHHHHHHHhCCCEEEECCCCHH--HHHHHHHHHHHcC-CC-EEEEEEec
Confidence            53 4566778899999999987653  2234556778876 44 66665433

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.33  E-value=0.0083  Score=44.08  Aligned_cols=105  Identities=14%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhhH----hhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQL----LDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~~----~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.| .|.+|+++++.|...|. ++++++.+.-.              ....|.+.    +.+.. ...++.+...
T Consensus        11 ~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~   89 (231)
T cd00755          11 NAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF   89 (231)
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence            46899999 59999999999999995 67777755311              11122222    22222 2234444444


Q ss_pred             CCChHHHHHHhc-CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           64 VLNHESLVKAIK-QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        64 ~~~~~~~~~~~~-~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      + +++.+.+++. ++|+||.+.....  ....+.+.|.+.+ + .+|...+.
T Consensus        90 i-~~~~~~~l~~~~~D~VvdaiD~~~--~k~~L~~~c~~~~-i-p~I~s~g~  136 (231)
T cd00755          90 L-TPDNSEDLLGGDPDFVVDAIDSIR--AKVALIAYCRKRK-I-PVISSMGA  136 (231)
T ss_pred             c-CHhHHHHHhcCCCCEEEEcCCCHH--HHHHHHHHHHHhC-C-CEEEEeCC
Confidence            4 3455666664 6999999877643  3456788888876 4 35444443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.33  E-value=0.0019  Score=51.27  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+|.|.| .|++|..++..|.+.|++|++++++
T Consensus         1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~   32 (411)
T TIGR03026         1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDID   32 (411)
T ss_pred             CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECC
Confidence            4799998 6999999999999999999999988

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=97.32  E-value=0.0018  Score=48.72  Aligned_cols=96  Identities=18%  Similarity=0.265  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~--~~d   78 (157)
                      ..+++|+|++|.+|..+++.+...|.+|++++++     .++.+.+.+.   ++.. ..|..+++.   +.+...  ++|
T Consensus       145 g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~---g~~~-~~~~~~~~~~~~~~~~~~~~~~d  215 (325)
T cd08253         145 GETVLVHGGSGAVGHAAVQLARWAGARVIATASS-----AEGAELVRQA---GADA-VFNYRAEDLADRILAATAGQGVD  215 (325)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHc---CCCE-EEeCCCcCHHHHHHHHcCCCceE
Confidence            4689999999999999999999999999999887     5555544332   2221 133443333   333332  689


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .++++++...   .....+.+..   .++++.+++.
T Consensus       216 ~vi~~~~~~~---~~~~~~~l~~---~g~~v~~~~~  245 (325)
T cd08253         216 VIIEVLANVN---LAKDLDVLAP---GGRIVVYGSG  245 (325)
T ss_pred             EEEECCchHH---HHHHHHhhCC---CCEEEEEeec
Confidence            9999987643   2222333322   2578877653

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.32  E-value=0.0025  Score=47.98  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC----CcEEEEecC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG----HPTFVLVRE   37 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g----~~v~~~~r~   37 (157)
                      |+ .|+|.++| +|.+|.++++.|++.|    ++|++.+|+
T Consensus         1 ~~-~mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v~~r~   39 (279)
T PRK07679          1 MS-IQNISFLG-AGSIAEAIIGGLLHANVVKGEQITVSNRS   39 (279)
T ss_pred             CC-CCEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            66 57899999 7999999999999987    688888776

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=97.31  E-value=0.0076  Score=47.72  Aligned_cols=108  Identities=19%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC--------------CCCCchhhH----hhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST--------------ISGPSKSQL----LDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~--------------~~~~~~~~~----~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.| .|++|+++++.|...|. ++++++.+.-              +....|.+.    +.+.. ..++..+...
T Consensus        42 ~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  120 (392)
T PRK07878         42 NARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR  120 (392)
T ss_pred             cCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence            46899999 59999999999999995 5777775531              111122222    22222 2345555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      ++ .+...++++++|+||.+....  ..-..+-++|.+.+ + .+|+.+..+.+
T Consensus       121 i~-~~~~~~~~~~~D~Vvd~~d~~--~~r~~ln~~~~~~~-~-p~v~~~~~g~~  169 (392)
T PRK07878        121 LD-PSNAVELFSQYDLILDGTDNF--ATRYLVNDAAVLAG-K-PYVWGSIYRFE  169 (392)
T ss_pred             CC-hhHHHHHHhcCCEEEECCCCH--HHHHHHHHHHHHcC-C-CEEEEEeccCE
Confidence            54 455677889999999887654  22333556678876 4 46676554433

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.29  E-value=0.0019  Score=49.41  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .|+|.|.| +|.+|+++++.|.+.|++|++.+|+.
T Consensus         4 ~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            57899998 69999999999999999999998874

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.28  E-value=0.0088  Score=46.10  Aligned_cols=78  Identities=23%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhh--hcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDH--FKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++||.|+|| |.+|+.++..++..|. +|++++.++.....+.++....  .......+...  .|.    +.++++|+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d~----~~l~~aDi   77 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NNY----EDIAGSDV   77 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CCH----HHhCCCCE
Confidence            3579999995 9999999999998884 8889888754321112221111  11112223221  222    24689999


Q ss_pred             EEEcCCCc
Q 040431           80 VISTVGHT   87 (157)
Q Consensus        80 vv~~a~~~   87 (157)
                      ||..++..
T Consensus        78 VI~tag~~   85 (321)
T PTZ00082         78 VIVTAGLT   85 (321)
T ss_pred             EEECCCCC
Confidence            99999774

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.27  E-value=0.0034  Score=50.81  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .+|.|+| .|..|+.+++.|+++|++|.+.+|++
T Consensus         2 ~~IgvIG-LG~MG~~lA~nL~~~G~~V~v~dr~~   34 (470)
T PTZ00142          2 SDIGLIG-LAVMGQNLALNIASRGFKISVYNRTY   34 (470)
T ss_pred             CEEEEEe-EhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4799999 69999999999999999999999983

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.25  E-value=0.001  Score=50.25  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~   33 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIK   33 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCC
Confidence            57999995 999999999999999999999998

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0019  Score=49.21  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      -+|.|+|| |.+|..-++-.+-.|.+|++++++     ..++..+.+....++..+.   +++..+++.+.++|.||...
T Consensus       169 ~kv~iiGG-GvvgtnaAkiA~glgA~Vtild~n-----~~rl~~ldd~f~~rv~~~~---st~~~iee~v~~aDlvIgaV  239 (371)
T COG0686         169 AKVVVLGG-GVVGTNAAKIAIGLGADVTILDLN-----IDRLRQLDDLFGGRVHTLY---STPSNIEEAVKKADLVIGAV  239 (371)
T ss_pred             ccEEEECC-ccccchHHHHHhccCCeeEEEecC-----HHHHhhhhHhhCceeEEEE---cCHHHHHHHhhhccEEEEEE
Confidence            47899996 999999999999999999999999     7777777666655554443   57888999999999999866


Q ss_pred             CCcc----hHHHHHHHHHHHH
Q 040431           85 GHTL----LADQVKIIAAIKE  101 (157)
Q Consensus        85 ~~~~----~~~~~~l~~~~~~  101 (157)
                      =+..    .-.++.+++.|+.
T Consensus       240 LIpgakaPkLvt~e~vk~Mkp  260 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMKP  260 (371)
T ss_pred             EecCCCCceehhHHHHHhcCC
Confidence            5554    2235555555554

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.24  E-value=0.0093  Score=42.91  Aligned_cols=82  Identities=13%  Similarity=0.154  Sum_probs=51.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|.|| |-+|...++.|++.|++|+++++..    ...+..+.  ....+.+..-++..     ..+.++|.||-.
T Consensus        10 ~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~----~~~l~~l~--~~~~i~~~~~~~~~-----~~l~~adlViaa   77 (202)
T PRK06718         10 NKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL----TENLVKLV--EEGKIRWKQKEFEP-----SDIVDAFLVIAA   77 (202)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC----CHHHHHHH--hCCCEEEEecCCCh-----hhcCCceEEEEc
Confidence            679999996 9999999999999999999987542    11222111  11235554433322     225678888865


Q ss_pred             CCCcchHHHHHHHHHH
Q 040431           84 VGHTLLADQVKIIAAI   99 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~   99 (157)
                      .+...  ....+.+.|
T Consensus        78 T~d~e--lN~~i~~~a   91 (202)
T PRK06718         78 TNDPR--VNEQVKEDL   91 (202)
T ss_pred             CCCHH--HHHHHHHHH
Confidence            55543  344555566

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.23  E-value=0.0078  Score=41.58  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++|+|.|| |-+|...++.|++.|++|++++.       +..+.+.+.  ..+....-.+. +.+    +.++|.||-.
T Consensus        13 ~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp-------~~~~~l~~l--~~i~~~~~~~~-~~d----l~~a~lViaa   77 (157)
T PRK06719         13 NKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSP-------EICKEMKEL--PYITWKQKTFS-NDD----IKDAHLIYAA   77 (157)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC-------ccCHHHHhc--cCcEEEecccC-hhc----CCCceEEEEC
Confidence            578999996 99999999999999999998842       222222222  13343333332 221    4678888865


Q ss_pred             CCCcchHHHHHHHHHHHH
Q 040431           84 VGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~  101 (157)
                      ....  +....+...+++
T Consensus        78 T~d~--e~N~~i~~~a~~   93 (157)
T PRK06719         78 TNQH--AVNMMVKQAAHD   93 (157)
T ss_pred             CCCH--HHHHHHHHHHHH
Confidence            4443  333444555544

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=97.23  E-value=0.0034  Score=47.49  Aligned_cols=102  Identities=13%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      ..+++|.||+|-+|+-+-+...-.|+.|+...=+     .++.+.++....-+.   ..|+.++.++.++++     ++|
T Consensus       154 geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS-----~EKv~ll~~~~G~d~---afNYK~e~~~~~aL~r~~P~GID  225 (343)
T KOG1196|consen  154 GETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGS-----KEKVDLLKTKFGFDD---AFNYKEESDLSAALKRCFPEGID  225 (343)
T ss_pred             CCEEEEeeccchhHHHHHHHHHhcCCEEEEecCC-----hhhhhhhHhccCCcc---ceeccCccCHHHHHHHhCCCcce
Confidence            3689999999999998777777779988877655     777777764432221   245555544555544     799


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSS  119 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~  119 (157)
                      +-|.|.|...   ...++..|...+   |++..+.++.|..
T Consensus       226 iYfeNVGG~~---lDavl~nM~~~g---ri~~CG~ISqYN~  260 (343)
T KOG1196|consen  226 IYFENVGGKM---LDAVLLNMNLHG---RIAVCGMISQYNL  260 (343)
T ss_pred             EEEeccCcHH---HHHHHHhhhhcc---ceEeeeeehhccc
Confidence            9999999863   344566666654   8999888888864

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=97.23  E-value=0.0017  Score=50.91  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      |++|+|.|| |.+|+.++..+.+.|++|++++.++...    ...   ..   =.++.+|+.|.+.+.++.+.+|+|..
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~p----a~~---~a---d~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSP----AAQ---VA---DEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCc----hhH---hC---ceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            468999996 8999999999999999999998764331    110   11   13556788999999999988888753

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=97.23  E-value=0.0028  Score=48.19  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHh-cCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAI-KQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~-~~~d~   79 (157)
                      ..+++|.|++|.+|..+++.+...|.+|++++++     +++.+.+++...  +. ...|..+.+.   +.+.. .++|+
T Consensus       146 ~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~-----~~~~~~~~~~~g--~~-~~~~~~~~~~~~~v~~~~~~~~d~  217 (329)
T cd05288         146 GETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGS-----DEKCRWLVEELG--FD-AAINYKTPDLAEALKEAAPDGIDV  217 (329)
T ss_pred             CCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHhhcC--Cc-eEEecCChhHHHHHHHhccCCceE
Confidence            3589999999999999999999999999988877     555554443111  11 1122223222   22222 36899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +++++|..   .....++.+...   ++++.+++..
T Consensus       218 vi~~~g~~---~~~~~~~~l~~~---G~~v~~g~~~  247 (329)
T cd05288         218 YFDNVGGE---ILDAALTLLNKG---GRIALCGAIS  247 (329)
T ss_pred             EEEcchHH---HHHHHHHhcCCC---ceEEEEeecc
Confidence            99988753   233444444333   4788776543

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.23  E-value=0.00081  Score=51.00  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |++.++|.|.|+ |.+|..++..|+..|++|++.+++.
T Consensus         1 ~~~~~~V~vIG~-G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          1 MAEIKKVGVVGA-GQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CCCcCEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            666789999995 9999999999999999999999883

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.23  E-value=0.00082  Score=44.80  Aligned_cols=31  Identities=32%  Similarity=0.454  Sum_probs=26.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEe
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV   35 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~   35 (157)
                      .++|.|+|+ |.+|.+|++.|.+.|++|..+.
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~   40 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALARAGHEVVGVY   40 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHHHTTSEEEEES
T ss_pred             ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEE
Confidence            468999996 9999999999999999988764

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.22  E-value=0.0034  Score=49.57  Aligned_cols=76  Identities=21%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC----CCeEE----EEccCCChHHHHHHhcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN----LGVNL----VIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~v~~----~~~D~~~~~~~~~~~~~   76 (157)
                      |+|.|.| .|++|..++..|. .|++|++++++     +++.+.+.....    +.+.-    ..+.++...+..++..+
T Consensus         1 mkI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d-----~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISG-TGYVGLSNGLLIA-QNHEVVALDIL-----PSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD   73 (388)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCcEEEEECC-----HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC
Confidence            3799998 7999999996665 59999999999     666655433110    00000    00111111122334567


Q ss_pred             cCEEEEcCCCc
Q 040431           77 VDVVISTVGHT   87 (157)
Q Consensus        77 ~d~vv~~a~~~   87 (157)
                      +|+||-+.+..
T Consensus        74 ad~vii~Vpt~   84 (388)
T PRK15057         74 ADYVIIATPTD   84 (388)
T ss_pred             CCEEEEeCCCC
Confidence            89888877754

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.22  E-value=0.0065  Score=46.20  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      ++|.|.| .|.+|.+++..|++.|++|++.+|+
T Consensus         2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~~   33 (296)
T PRK15461          2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDVN   33 (296)
T ss_pred             CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4899998 6999999999999999999999988

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.21  E-value=0.0029  Score=48.04  Aligned_cols=81  Identities=11%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCC--CeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNL--GVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~--~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++++|.|+ |+.+++++-.|.+.|. +|++++|+...  .++++.+.+....  +......++.+.+.+.+.+.++|+|
T Consensus       124 ~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~--~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv  200 (288)
T PRK12749        124 GKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEF--FDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL  200 (288)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccH--HHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence            468999996 7779999999999885 79999998331  2344444332211  1111122222333355566789999


Q ss_pred             EEcCCCc
Q 040431           81 ISTVGHT   87 (157)
Q Consensus        81 v~~a~~~   87 (157)
                      ||.....
T Consensus       201 INaTp~G  207 (288)
T PRK12749        201 TNGTKVG  207 (288)
T ss_pred             EECCCCC
Confidence            9977654

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=97.21  E-value=0.0036  Score=46.89  Aligned_cols=96  Identities=17%  Similarity=0.202  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~--~~d   78 (157)
                      ..+++|+|++|.+|..+++.+...|.+|++++++     .++.+.+.+..   +. ...+..+.+.   +.....  ++|
T Consensus       140 ~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~-----~~~~~~~~~~g---~~-~~~~~~~~~~~~~~~~~~~~~~~d  210 (323)
T cd05276         140 GETVLIHGGASGVGTAAIQLAKALGARVIATAGS-----EEKLEACRALG---AD-VAINYRTEDFAEEVKEATGGRGVD  210 (323)
T ss_pred             CCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHcC---CC-EEEeCCchhHHHHHHHHhCCCCeE
Confidence            4689999999999999999999999999988877     44554443332   11 1233333322   223332  589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .+++++|...   ....++.+...   ++++.++..
T Consensus       211 ~vi~~~g~~~---~~~~~~~~~~~---g~~i~~~~~  240 (323)
T cd05276         211 VILDMVGGDY---LARNLRALAPD---GRLVLIGLL  240 (323)
T ss_pred             EEEECCchHH---HHHHHHhhccC---CEEEEEecC
Confidence            9999988542   22333333332   467766543

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.20  E-value=0.005  Score=47.42  Aligned_cols=110  Identities=11%  Similarity=0.112  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc--hhh-HhhhhcCCCe--EEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS--KSQ-LLDHFKNLGV--NLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~--~~~-~~~~~~~~~v--~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      .++|.|.| +|-+|..++..|+..|++|++.++++......  .++ .+......+.  ......+.-..++++++.++|
T Consensus         7 i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD   85 (321)
T PRK07066          7 IKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD   85 (321)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence            36899999 49999999999999999999999884321000  000 0111110110  000011122234667788999


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      .|+-++.-. ...-+.+...+.+.- .+.-|+.||++.
T Consensus        86 lViEavpE~-l~vK~~lf~~l~~~~-~~~aIlaSnTS~  121 (321)
T PRK07066         86 FIQESAPER-EALKLELHERISRAA-KPDAIIASSTSG  121 (321)
T ss_pred             EEEECCcCC-HHHHHHHHHHHHHhC-CCCeEEEECCCc
Confidence            999876554 444445555555543 233355554443

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.20  E-value=0.0011  Score=50.22  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |++.++|.|+|+ |.+|..++..|+..|++|++.++++
T Consensus         1 ~~~~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          1 MMAIKKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            544678999995 9999999999999999999999883

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.20  E-value=0.005  Score=47.75  Aligned_cols=96  Identities=13%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCCh----HHHHHHhc-Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNH----ESLVKAIK-QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~----~~~~~~~~-~~   77 (157)
                      ..+++|.||+|.+|..+++.+...|.+|++++++     +++.+.+. ++.   ... ..|..+.    +.+.+... ++
T Consensus       159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~-----~~k~~~~~~~lG---a~~-vi~~~~~~~~~~~i~~~~~~gv  229 (348)
T PLN03154        159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS-----SQKVDLLKNKLG---FDE-AFNYKEEPDLDAALKRYFPEGI  229 (348)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHhcC---CCE-EEECCCcccHHHHHHHHCCCCc
Confidence            4589999999999999999888889999888776     55555543 232   111 1233222    22222222 58


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |++++++|..   .....++.+...   ++++.++..
T Consensus       230 D~v~d~vG~~---~~~~~~~~l~~~---G~iv~~G~~  260 (348)
T PLN03154        230 DIYFDNVGGD---MLDAALLNMKIH---GRIAVCGMV  260 (348)
T ss_pred             EEEEECCCHH---HHHHHHHHhccC---CEEEEECcc
Confidence            9999999852   234455555544   478877653

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.19  E-value=0.0025  Score=48.04  Aligned_cols=32  Identities=28%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+|.|.| .|.+|..++..|.+.|++|++.+|+
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~   32 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRR   32 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999 7999999999999999999999987

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.18  E-value=0.0033  Score=50.88  Aligned_cols=76  Identities=21%  Similarity=0.292  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhc----CCCeEEE----Ec-cCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFK----NLGVNLV----IG-DVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~----~~~v~~~----~~-D~~~~~~~~~   72 (157)
                      ||+|.|.| .|++|..++-.|.+.|  ++|++++.+     +++.+.+....    .+++.-+    .. .+.-..++.+
T Consensus         1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~-----~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~   74 (473)
T PLN02353          1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDIS-----VPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEK   74 (473)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECC-----HHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence            46899998 6999999999999985  779999988     65655543221    0111000    00 0111122344


Q ss_pred             HhcCcCEEEEcCC
Q 040431           73 AIKQVDVVISTVG   85 (157)
Q Consensus        73 ~~~~~d~vv~~a~   85 (157)
                      .++++|++|-+.+
T Consensus        75 ~i~~advi~I~V~   87 (473)
T PLN02353         75 HVAEADIVFVSVN   87 (473)
T ss_pred             HHhcCCEEEEEeC
Confidence            5678899988776

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.17  E-value=0.0016  Score=49.28  Aligned_cols=34  Identities=12%  Similarity=0.164  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++++|.|++|.+|++++..|++.|.+|+++.|.
T Consensus       159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5789999998889999999999999988887653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.17  E-value=0.0041  Score=47.03  Aligned_cols=32  Identities=34%  Similarity=0.508  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+|.|.|+ |.+|..++..|.+.|++|++++|+
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence            47999995 999999999999999999999996

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.17  E-value=0.002  Score=46.25  Aligned_cols=33  Identities=18%  Similarity=0.158  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++++|+|. |.+|+++++.|.+.|++|++.+++
T Consensus        28 gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          28 GKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence            478999996 799999999999999999988776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14852 hypothetical protein; Provisional

Probab=97.17  E-value=0.01  Score=51.75  Aligned_cols=108  Identities=15%  Similarity=0.151  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC---C-----------CCCchhhH----hhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST---I-----------SGPSKSQL----LDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~---~-----------~~~~~~~~----~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.| .|++|+.+++.|...|. ++++++.+.-   +           ....|.+.    +.+.+ ..+|+.+...
T Consensus       332 ~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~  410 (989)
T PRK14852        332 RSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG  410 (989)
T ss_pred             cCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence            46899999 58999999999999995 5666664431   1           11122222    22332 2345555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      + +++.+.++++++|+||...-.......+.+.+.|.+.+ ++ +|+.++.+
T Consensus       411 I-~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~-IP-~I~ag~~G  459 (989)
T PRK14852        411 V-AAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG-IP-VITAGPLG  459 (989)
T ss_pred             C-CHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC-CC-EEEeeccc
Confidence            5 56678888999999998877655555567788888877 44 66665544

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.17  E-value=0.0014  Score=53.86  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh-cCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI-KQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~-~~~d~vv~   82 (157)
                      .++++|+|+ |++|++++..|.+.|++|++++|+     .++.+.+.+....  ..+  ++   +++.+.. ...|+|||
T Consensus       379 ~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~-----~e~a~~la~~l~~--~~~--~~---~~~~~~~~~~~diiIN  445 (529)
T PLN02520        379 GKLFVVIGA-GGAGKALAYGAKEKGARVVIANRT-----YERAKELADAVGG--QAL--TL---ADLENFHPEEGMILAN  445 (529)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHhCC--cee--eH---hHhhhhccccCeEEEe
Confidence            468999997 899999999999999999999887     5555544332221  111  11   2222222 34688888


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      +.+...
T Consensus       446 tT~vGm  451 (529)
T PLN02520        446 TTSVGM  451 (529)
T ss_pred             cccCCC
Confidence            776653

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.16  E-value=0.0074  Score=46.35  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .+++.|.| .|.||+.+++.|...|.+|++.++..
T Consensus       136 g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~  169 (312)
T PRK15469        136 DFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSR  169 (312)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            47899999 79999999999999999999988764

>PLN02928 oxidoreductase family protein

Probab=97.14  E-value=0.0025  Score=49.67  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .+++.|.| .|.||+.+++.|...|.+|++.+|.
T Consensus       159 gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        159 GKTVFILG-YGAIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCC
Confidence            57899999 6999999999999999999998876

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.13  E-value=0.01  Score=46.67  Aligned_cols=81  Identities=19%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEcc----------------C-
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD----------------V-   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D----------------~-   64 (157)
                      |++|.|.|+||.||...++.+.+.  .++|+.++-+.+   .+++..+.+...+...++.-+                + 
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n---~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~   77 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKN---VELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVL   77 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEE
Confidence            468999999999999999888765  468888864321   444443332222222222110                0 


Q ss_pred             CChHHHHHHhc--CcCEEEEcCCCc
Q 040431           65 LNHESLVKAIK--QVDVVISTVGHT   87 (157)
Q Consensus        65 ~~~~~~~~~~~--~~d~vv~~a~~~   87 (157)
                      ..++.+.+++.  .+|+|++..+..
T Consensus        78 ~G~~~~~~l~~~~~vD~Vv~Ai~G~  102 (385)
T PRK05447         78 AGEEGLCELAALPEADVVVAAIVGA  102 (385)
T ss_pred             EChhHHHHHhcCCCCCEEEEeCcCc
Confidence            13455666665  479999877654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=97.12  E-value=0.0066  Score=44.72  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC---C-----------CCchhh----Hhhhhc-CCCeEEEEccCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI---S-----------GPSKSQ----LLDHFK-NLGVNLVIGDVL   65 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~---~-----------~~~~~~----~~~~~~-~~~v~~~~~D~~   65 (157)
                      +|+|.| .|++|.++++.|...|. ++++++.+.-.   .           ...|.+    .+.+.. ..++..+..++.
T Consensus         1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            588999 59999999999999995 67777765411   1           111222    122222 234666777775


Q ss_pred             ChHHH-HHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           66 NHESL-VKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        66 ~~~~~-~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +..+. .+.+++.|+||+.....  ..-+.+-+.+.+.+ + .++..++.+
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~Dn~--~aR~~ln~~c~~~~-i-plI~~g~~G  126 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALDNI--IARRYVNGMLIFLI-V-PLIESGTEG  126 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCCCH--HHHHHHHHHHHHcC-C-CEEEEcccC
Confidence            54332 45678999999876653  33344566677776 3 466665544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.12  E-value=0.0031  Score=48.52  Aligned_cols=87  Identities=18%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--c-EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--P-TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~-v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +++|.|.||||.+|+.+++.|.++..  + +.++...++..  .+   ..++....+.. .-++.|...    ++++|++
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG--~~---~~~f~~~~~~v-~~~~~~~~~----~~~~Div   70 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAG--KK---YIEFGGKSIGV-PEDAADEFV----FSDVDIV   70 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccC--Cc---cccccCccccC-ccccccccc----cccCCEE
Confidence            46899999999999999999999653  3 33333322211  00   00111111111 111122221    2379999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      |.++|...   ++.+.+.+.+.|
T Consensus        71 f~~ag~~~---s~~~~p~~~~~G   90 (334)
T COG0136          71 FFAAGGSV---SKEVEPKAAEAG   90 (334)
T ss_pred             EEeCchHH---HHHHHHHHHHcC
Confidence            99998763   678888888887

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=97.11  E-value=0.006  Score=46.24  Aligned_cols=95  Identities=17%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh---HHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH---ESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~~--~~d   78 (157)
                      ..+++|.||+|.+|..+++.+...|.+|++++++     .++.+.+.+.   ++..+ .+..+.   +.+.+...  ++|
T Consensus       140 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-----~~~~~~~~~~---g~~~~-~~~~~~~~~~~i~~~~~~~~~d  210 (324)
T cd08292         140 GQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR-----DAGVAELRAL---GIGPV-VSTEQPGWQDKVREAAGGAPIS  210 (324)
T ss_pred             CCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC-----HHHHHHHHhc---CCCEE-EcCCCchHHHHHHHHhCCCCCc
Confidence            4689999999999999999999999999988877     4444444432   22221 222322   23333333  599


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .++++.|...   ....++.+...   ++|+.++.
T Consensus       211 ~v~d~~g~~~---~~~~~~~l~~~---g~~v~~g~  239 (324)
T cd08292         211 VALDSVGGKL---AGELLSLLGEG---GTLVSFGS  239 (324)
T ss_pred             EEEECCCChh---HHHHHHhhcCC---cEEEEEec
Confidence            9999988642   33445544443   47887764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.11  E-value=0.0033  Score=47.94  Aligned_cols=69  Identities=25%  Similarity=0.272  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ++|.|+| .|.+|..++..|.+.|+  +|++++|+     +++.+...+.   ++...   ..  .+..+.+.++|+||.
T Consensus         7 ~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~-----~~~~~~a~~~---g~~~~---~~--~~~~~~~~~aDvVii   72 (307)
T PRK07502          7 DRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRS-----AETRARAREL---GLGDR---VT--TSAAEAVKGADLVIL   72 (307)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECC-----HHHHHHHHhC---CCCce---ec--CCHHHHhcCCCEEEE
Confidence            6899999 79999999999999885  78888887     4444333221   11000   00  112334567787777


Q ss_pred             cCCCc
Q 040431           83 TVGHT   87 (157)
Q Consensus        83 ~a~~~   87 (157)
                      ++...
T Consensus        73 avp~~   77 (307)
T PRK07502         73 CVPVG   77 (307)
T ss_pred             CCCHH
Confidence            77654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.11  E-value=0.0023  Score=48.48  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|.|.|+ |.+|..++..|+..|++|++.++++
T Consensus         3 i~~I~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          3 IKVIGVVGS-GVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            468999995 9999999999999999999999883

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.11  E-value=0.0028  Score=48.01  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=32.9

Q ss_pred             CCC-CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            1 MAS-KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         1 M~~-~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      |++ +++|.|.|+ |.+|..++..|+..|++|+++++++.
T Consensus         1 ~~~~~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          1 MSDAIQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             CCCCccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            543 358999995 99999999999999999999999943

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=97.09  E-value=0.0062  Score=47.86  Aligned_cols=105  Identities=18%  Similarity=0.249  Sum_probs=67.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC---C-----------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST---I-----------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~---~-----------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.|+ |++|.++++.|...|. ++++++.+.-   +           ....|.+    .+.+.. ..+++.+...
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~  119 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER  119 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence            458999995 9999999999999995 7888887631   1           1112222    222332 2345555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      + +++.+.++++++|+||.+.-...  .-..+-++|.+.+ ++ +|+.+..
T Consensus       120 i-~~~~~~~~~~~~DlVid~~Dn~~--~r~~in~~~~~~~-iP-~v~~~~~  165 (370)
T PRK05600        120 L-TAENAVELLNGVDLVLDGSDSFA--TKFLVADAAEITG-TP-LVWGTVL  165 (370)
T ss_pred             c-CHHHHHHHHhCCCEEEECCCCHH--HHHHHHHHHHHcC-CC-EEEEEEe
Confidence            5 35567788899999999887753  2223445677776 44 5665543

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=97.09  E-value=0.0058  Score=46.42  Aligned_cols=95  Identities=15%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC--hHHHHHHh-cCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN--HESLVKAI-KQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~~~~-~~~d~vv   81 (157)
                      .+++|.|++|.+|..+++.+...|.+|++++++     +++.+.+.++.   +..+ .|..+  .+.+.+.- .++|.++
T Consensus       148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g---~~~v-~~~~~~~~~~~~~~~~~~~d~vl  218 (326)
T cd08289         148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGK-----ADAADYLKKLG---AKEV-IPREELQEESIKPLEKQRWAGAV  218 (326)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC-----HHHHHHHHHcC---CCEE-EcchhHHHHHHHhhccCCcCEEE
Confidence            589999999999999999999999999988888     55555554432   2111 22222  22233321 2589999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++.|..   .....++.+...   ++++.++..
T Consensus       219 d~~g~~---~~~~~~~~l~~~---G~~i~~g~~  245 (326)
T cd08289         219 DPVGGK---TLAYLLSTLQYG---GSVAVSGLT  245 (326)
T ss_pred             ECCcHH---HHHHHHHHhhcC---CEEEEEeec
Confidence            988753   344555555554   478877653

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=97.08  E-value=0.0032  Score=49.56  Aligned_cols=72  Identities=15%  Similarity=0.319  Sum_probs=53.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      +|+|+|+|+ |..|..++..+.+.|++|++++.++...  ...     ..+   .++..|..|.+.+.++++  ++|.|+
T Consensus        12 ~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~--~~~-----~ad---~~~~~~~~d~~~l~~~~~~~~id~vi   80 (395)
T PRK09288         12 ATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAP--AMQ-----VAH---RSHVIDMLDGDALRAVIEREKPDYIV   80 (395)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCc--hHH-----hhh---heEECCCCCHHHHHHHHHHhCCCEEE
Confidence            568999995 7899999999999999999998774331  100     001   245678888888888887  789888


Q ss_pred             EcCCC
Q 040431           82 STVGH   86 (157)
Q Consensus        82 ~~a~~   86 (157)
                      -....
T Consensus        81 ~~~e~   85 (395)
T PRK09288         81 PEIEA   85 (395)
T ss_pred             EeeCc
Confidence            65443

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=97.06  E-value=0.0094  Score=45.36  Aligned_cols=97  Identities=21%  Similarity=0.194  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh---HHHHHHh-cCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH---ESLVKAI-KQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~-~~~d~   79 (157)
                      ..+++|.|++|.+|..+++.+...|.+|++++++     +++.+.+.++.   +..+ .+..+.   +.+.... +++|.
T Consensus       140 ~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g---~~~v-~~~~~~~~~~~~~~~~~~~vd~  210 (329)
T cd08250         140 GETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSS-----DEKAEFLKSLG---CDRP-INYKTEDLGEVLKKEYPKGVDV  210 (329)
T ss_pred             CCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCc-----HHHHHHHHHcC---CceE-EeCCCccHHHHHHHhcCCCCeE
Confidence            4689999999999999999999999999988877     44444444332   2111 222222   1222221 25899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++++.|..   .....++.+...   ++++.+++..
T Consensus       211 v~~~~g~~---~~~~~~~~l~~~---g~~v~~g~~~  240 (329)
T cd08250         211 VYESVGGE---MFDTCVDNLALK---GRLIVIGFIS  240 (329)
T ss_pred             EEECCcHH---HHHHHHHHhccC---CeEEEEeccc
Confidence            99988742   344455555443   4788887654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.05  E-value=0.003  Score=47.76  Aligned_cols=56  Identities=20%  Similarity=0.331  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+++.+|+.++..|...|.+|+++.+..                             .++.+.++++|+||..
T Consensus       158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-----------------------------~~l~~~~~~ADIVIsA  208 (286)
T PRK14175        158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-----------------------------KDMASYLKDADVIVSA  208 (286)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHHhhCCEEEEC
Confidence            57999999999999999999999999999886541                             2355667888999988


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      +|...
T Consensus       209 vg~p~  213 (286)
T PRK14175        209 VGKPG  213 (286)
T ss_pred             CCCCc
Confidence            88864

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=97.04  E-value=0.0078  Score=46.17  Aligned_cols=96  Identities=16%  Similarity=0.214  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC--hHHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN--HESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~~~~~--~~d   78 (157)
                      ..+++|+|+ |.+|..++..+...|.+ |++++++     +++.+.+.++.   .. ...|..+  .+.+.++..  ++|
T Consensus       164 g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~-----~~~~~~~~~~g---a~-~~i~~~~~~~~~~~~~~~~~~~d  233 (339)
T cd08239         164 RDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPS-----PERLELAKALG---AD-FVINSGQDDVQEIRELTSGAGAD  233 (339)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhC---CC-EEEcCCcchHHHHHHHhCCCCCC
Confidence            458999985 99999999999999988 8888777     55665554443   21 1233333  333444443  589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|++.|...  .....++.+...   ++++.++..
T Consensus       234 ~vid~~g~~~--~~~~~~~~l~~~---G~~v~~g~~  264 (339)
T cd08239         234 VAIECSGNTA--ARRLALEAVRPW---GRLVLVGEG  264 (339)
T ss_pred             EEEECCCCHH--HHHHHHHHhhcC---CEEEEEcCC
Confidence            9999988642  123345555443   478777653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
1qyc_A	308	Crystal Structures Of Pinoresinol-Lariciresinol And		2e-22
2gas_A	307	Crystal Structure Of Isoflavone Reductase Length =		1e-20
1qyd_A	313	Crystal Structures Of Pinoresinol-Lariciresinol And		6e-19
3c1o_A	321	The Multiple Phenylpropene Synthases In Both Clarki		1e-17
2qw8_A	314	Structure Of Eugenol Synthase From Ocimum Basilicum		2e-17
2r2g_A	318	Structure Of Eugenol Synthase From Ocimum Basilicum		3e-17
2qx7_A	318	Structure Of Eugenol Synthase From Ocimum Basilicum		3e-17
3c3x_A	318	The Multiple Phenylpropene Synthases In Both Clarki		9e-17
3i52_A	346	Ternary Complex Structure Of Leucoanthocyanidin Red		7e-11

>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And Phenylcoumaran Benzylic Ether Reductases, And Their Relationship To Isoflavone Reductases Length = 308

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS-KSQLLDHFKNLGVNL 59
          M S+S+IL IG TGYIG+   +AS+  GHPTF+LVREST S  S K+QLL+ FK  G N+
Sbjct: 1  MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 60 VIGDVLNHESLVKAIKQVDVVISTVGHTLLADQV 93
          V G + +H SLV+A+K VDVVISTVG   +  QV
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQV 94

>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase Length = 307

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 72/93 (77%), Gaps = 2/93 (2%)
Query: 3  SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES-TISGP-SKSQLLDHFKNLGVNLV 60
          +++KIL +G TG IG+  V AS+KAG+PT+ LVR++ T + P +K +L+D++++LGV L+
Sbjct: 1  TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 61 IGDVLNHESLVKAIKQVDVVISTVGHTLLADQV 93
           GD+ +HE+LVKAIKQVD+VI   G  L+ DQV
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIEDQV 93

>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And Phenylcoumaran Benzylic Ether Reductases, And Their Relationship To Isoflavone Reductases Length = 313

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
          M  KS++L +GGTGYIGK  V AS+  GHPT+VL R   +S   K Q+L +FK LG  L+
Sbjct: 1  MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 61 IGDVLNHESLVKAIKQVDVVISTVGHTLLADQV 93
             + +H+ LV A+KQVDVVIS +   +L+  +
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHI 93

>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia Breweri And Petunia Hybrida Represent Two Distinct Lineages Length = 321

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 5  SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI-SGPSKSQLLDHFKNLGVNLVIGD 63
           KI+  GGTGYIGKF V AS+   HPTF+  R  T  S PS  QL + F+++GV ++ G+
Sbjct: 5  EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQV 93
          +  HE +V  +KQVD+VIS +   +++ Q+
Sbjct: 65 MEEHEKMVSVLKQVDIVISALPFPMISSQI 94

>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum Length = 314

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          KSKIL  GGTGYIG   V+ S+K GHPT+V  R ++    SK+ LLD F++LG  +V G+
Sbjct: 7  KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 62
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
          +  HE LV+ +K+VDVVIS +    + DQ
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQILDQ 91

>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum Complexed With Emdf Length = 318

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          KSKIL  GGTGYIG   V+ S+K GHPT+V  R ++    SK+ LLD F++LG  +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
          +  HE LV+ +K+VDVVIS +    + DQ
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQ 95

>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum Length = 318

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          KSKIL  GGTGYIG   V+ S+K GHPT+V  R ++    SK+ LLD F++LG  +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
          +  HE LV+ +K+VDVVIS +    + DQ
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQ 95

>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia Breweri And Petunia Hybrida Represent Two Distinct Lineages Length = 318

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          KSKIL  GGTGYIG   V+ S+K GHPT+V  R ++    SK+ LLD F++LG  +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
          +  HE LV+ +K+VDVVIS +      DQ
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQYLDQ 95

>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase From Vitis Vinifera Length = 346

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 2   ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI 61
           + K ++L  G TG+IG+F   AS+ A  PT++L R    S PSK+++    ++ G  +V 
Sbjct: 8   SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVY 66
Query: 62  GDVLNHESLVKAIK--QVDVVISTVGHTLLADQV 93
           G +   E++ K +K  ++D+V+STVG   + DQ+
Sbjct: 67  GLINEQEAMEKILKEHEIDIVVSTVGGESILDQI 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	1e-38
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	4e-37
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	3e-36
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	9e-36
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	8e-35
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	2e-33
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	2e-16
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	5e-15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	7e-15
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	5e-13
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	5e-13
1xq6_A	253	Unknown protein; structural genomics, protein stru	2e-12
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	5e-12
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	8e-12
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	2e-10
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	1e-09
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	3e-07
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	5e-07
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	6e-07
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	6e-07
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	3e-06
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	3e-06
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	4e-06
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	5e-06
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	5e-06
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	6e-06
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	8e-06
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	9e-06
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	3e-05
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	5e-05
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	6e-05
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	7e-05
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	8e-05
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	9e-05
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	9e-05
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	1e-04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	1e-04
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	1e-04
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	2e-04
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	2e-04
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	2e-04
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	2e-04
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	6e-04
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	7e-04
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	8e-04

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308

 Score =  132 bits (333), Expect = 1e-38
 Identities = 60/108 (55%), Positives = 74/108 (68%), Gaps = 1/108 (0%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG-PSKSQLLDHFKNLGVNL 59
           M S+S+IL IG TGYIG+   +AS+  GHPTF+LVREST S    K+QLL+ FK  G N+
Sbjct: 1   MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60

Query: 60  VIGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           V G + +H SLV+A+K VDVVISTVG   +  QV II AIKE     R
Sbjct: 61  VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKR 108

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score =  128 bits (323), Expect = 4e-37
 Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 4/111 (3%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           M  KS++L +GGTGYIGK  V AS+  GHPT+VL R   +S   K Q+L +FK LG  L+
Sbjct: 1   MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTL----LADQVKIIAAIKEAEGASR 107
              + +H+ LV A+KQVDVVIS +   +    + +Q+K++ AIKEA    R
Sbjct: 61  EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKR 111

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score =  126 bits (317), Expect = 3e-36
 Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 2   ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVR-ESTISGPSKSQLLDHFKNLGVNLV 60
           +   KI+  GGTGYIGKF V AS+   HPTF+  R  +  S PS  QL + F+++GV ++
Sbjct: 2   SHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTII 61

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
            G++  HE +V  +KQVD+VIS +   +++ Q+ II AIK A    R
Sbjct: 62  EGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKR 108

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307

 Score =  124 bits (313), Expect = 9e-36
 Identities = 54/102 (52%), Positives = 78/102 (76%), Gaps = 2/102 (1%)

Query: 3   SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG--PSKSQLLDHFKNLGVNLV 60
           +++KIL +G TG IG+  V AS+KAG+PT+ LVR++  +    +K +L+D++++LGV L+
Sbjct: 1   TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
            GD+ +HE+LVKAIKQVD+VI   G  L+ DQVKII AIKEA
Sbjct: 61  EGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEA 102

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score =  122 bits (308), Expect = 8e-35
 Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 2   ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI 61
             KSKIL  GGTGYIG   V+ S+K GHPT+V  R +     SK+ LLD F++LG  +V 
Sbjct: 9   GMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN----SSKTTLLDEFQSLGAIIVK 64

Query: 62  GDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           G++  HE LV+ +K+VDVVIS +    + DQ KI+ AIK A    R
Sbjct: 65  GELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKR 110

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score =  119 bits (300), Expect = 2e-33
 Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 2   ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI 61
           + K ++L  G TG+IG+F   AS+ A  PT++L R    S PSK+++    ++ G  +V 
Sbjct: 8   SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVY 66

Query: 62  GDVLNHESLVKAIKQ--VDVVISTVGHTLLADQVKIIAAIKEAEGASR 107
           G +   E++ K +K+  +D+V+STVG   + DQ+ ++ A+K      R
Sbjct: 67  GLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKR 114

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 18/115 (15%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA K KI   G TG  G  T+  +V+AG+   VLVR+      S+   L        ++V
Sbjct: 1   MAVK-KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD-----SSR---LPSEGPRPAHVV 51

Query: 61  IGDVLNHESLVKAIKQVDVVISTVG-------HTLLADQVK-IIAAIKEAEGASR 107
           +GDVL    + K +   D VI  +G        T++++  + I+AA+K   G  +
Sbjct: 52  VGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAH-GVDK 105

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 68.7 bits (168), Expect = 5e-15
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 6   KILFIGGTGYIGKFTV-EASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
            +L +G  G I +  + + + K      +  R+     P+K             +++GDV
Sbjct: 25  NVLILGAGGQIARHVINQLADKQTIKQTLFARQ-----PAKIHKPYP---TNSQIIMGDV 76

Query: 65  LNHESLVKAIKQVDVVISTVGHTLLADQVK-IIAAIKEA 102
           LNH +L +A++  D+V + +    L  Q   +IAA+K  
Sbjct: 77  LNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKAC 115

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score = 68.2 bits (167), Expect = 7e-15
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
          M    KI+ IG +G++G   +  ++  G     +VR      P K ++ +      + + 
Sbjct: 1  MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRH-----PEKIKIENE----HLKVK 51

Query: 61 IGDVLNHESLVKAIKQVDVVISTVG 85
            DV + + + +  K  D VIS   
Sbjct: 52 KADVSSLDEVCEVCKGADAVISAFN 76

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 63.1 bits (153), Expect = 5e-13
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 6   KILFIGGTGYIGKFTVE-ASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
            I  +G  G I +               +  R             +   +  V ++ G  
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGR-----QLKTRIPPEIIDHERVTVIEGSF 61

Query: 65  LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKE 101
            N   L +A+   +VV      +  +D   I+ A+  
Sbjct: 62  QNPGXLEQAVTNAEVVFVGAMES-GSDMASIVKALSR 97

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          K   +G TG +G     A   AGH   ++ R         S  +     L     + ++L
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHR--------PSSQIQRLAYLEPECRVAEML 66

Query: 66 NHESLVKAIKQVDVVISTVGHT 87
          +H  L +A++ +D VI + G+ 
Sbjct: 67 DHAGLERALRGLDGVIFSAGYY 88

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 2  ASKSKILFIGGTGYIGKFTVEASVKAGHPTFV--LVRESTISGPSKSQLLDHFKNLGVNL 59
          A+   +L  G +G  G+   +   +         LVR          + +        ++
Sbjct: 2  ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS-----AQGKEKIGG----EADV 52

Query: 60 VIGDVLNHESLVKAIKQVDVVISTVG 85
           IGD+ + +S+  A + +D ++    
Sbjct: 53 FIGDITDADSINPAFQGIDALVILTS 78

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 19/110 (17%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV- 64
           KI  +G TG +GK  +++     +  +   R+       +    +      V  V  DV 
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARK-----VEQVPQYN-----NVKAVHFDVD 51

Query: 65  LNHESLVKAIKQVDVVISTVGH----TLLAD---QVKIIAAIKEAEGASR 107
              E + K +  +D +I+  G      L  D    VK++ A ++A    R
Sbjct: 52  WTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKA-EVKR 100

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 60.1 bits (146), Expect = 8e-12
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           ++L +G  G + ++ +      GH    +VR       ++ Q  +  +    ++V+ ++ 
Sbjct: 23  RVLVVGANGKVARYLLSELKNKGHEPVAMVR-------NEEQGPELRERGASDIVVANL- 74

Query: 66  NHESLVKAIKQVDVVISTVG--------HTLLAD---QVKIIAAIKEAEGASR 107
             E    A   +D V+   G         T+L D    +K I   ++  G  R
Sbjct: 75  -EEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKR-GIKR 125

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 17/109 (15%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           KI  +G TG  G   V  + + GH    +VR+     P K+        LG  +      
Sbjct: 2   KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD-----PQKAADR-----LGATVATLVKE 51

Query: 66  NHESLVKAIKQVDVVISTVGH-------TLLADQVKIIAAIKEAEGASR 107
                   +  VD V+  +          L  D    + ++        
Sbjct: 52  PLVLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLA 100

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 16/107 (14%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           KI  IG TG  G   +E +   GH    +VR        K           +N++  D+ 
Sbjct: 2   KIGIIGATGRAGSRILEEAKNRGHEVTAIVRN-----AGKITQTHK----DINILQKDIF 52

Query: 66  NHESLVKAIKQVDVVISTVGH-----TLLADQVKIIAAIKEAEGASR 107
             +  +  +   +VV+   G            +  + ++     + R
Sbjct: 53  --DLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPR 97

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 14/103 (13%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTF-VLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
            I+  G TG++G      ++      F + VR        K           V++   D 
Sbjct: 2   NIMLTGATGHLGTHITNQAIANHIDHFHIGVRN-----VEKVP---DDWRGKVSVRQLDY 53

Query: 65  LNHESLVKAIKQVDVV--ISTVGH---TLLADQVKIIAAIKEA 102
            N ES+V+A K +D V  I ++ H     + +   ++ A K++
Sbjct: 54  FNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQS 96

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 11/77 (14%)

Query: 5  SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
          +++L  G  G +G           H   +                   +     +V  D+
Sbjct: 3  NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL----------GAAEA-HEEIVACDL 51

Query: 65 LNHESLVKAIKQVDVVI 81
           + +++   +K  D +I
Sbjct: 52 ADAQAVHDLVKDCDGII 68

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTF-VLVRESTISGPSKSQLLDHFKNLGVNL 59
          M  K  ++  GGTG  G       ++ G     V+ R       +  +L    +  G  +
Sbjct: 2  MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTR--NPRKKAAKEL----RLQGAEV 55

Query: 60 VIGDVLNHESLVKAIKQVDVVIS 82
          V GD  +   +  A+        
Sbjct: 56 VQGDQDDQVIMELALNGAYATFI 78

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 12/81 (14%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
          MA K ++L  G  G +G+   E          +               LD         V
Sbjct: 1  MAMK-RLLVTGAAGQLGRVMRERLAPMAEILRLADLSP----------LDP-AGPNEECV 48

Query: 61 IGDVLNHESLVKAIKQVDVVI 81
            D+ +  ++   +   D ++
Sbjct: 49 QCDLADANAVNAMVAGCDGIV 69

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFV--LVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
           I   G TG +G + +E+ +K    + +  +VR      P+K          G+ +   D 
Sbjct: 2   IAITGATGQLGHYVIESLMKTVPASQIVAIVRN-----PAK---AQALAAQGITVRQADY 53

Query: 65  LNHESLVKAIKQVDVV--ISTVGHTLLADQVK-IIAAIKEA 102
            +  +L  A++ V+ +  IS+      A Q + +I A K A
Sbjct: 54  GDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAA 94

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           MA+K  +L + G+G++ + T++    +G    V  R    +  S  +L    ++     +
Sbjct: 1   MATK-SVL-MLGSGFVTRPTLDVLTDSGIKVTVACR----TLESAKKLSAGVQH--STPI 52

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIK 100
             DV +  +L   + + D+VIS + +T  A  +K     K
Sbjct: 53  SLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQK 92

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 7   ILFIGGTGYIGKFTVEASVKAGHPTFV--LVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
           I   G TG +G   ++  +K    + +  +VR        K        + GV +  GD 
Sbjct: 3   IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRN-----VEK---ASTLADQGVEVRHGDY 54

Query: 65  LNHESLVKAIKQVDVVI----STVGHTLLADQVK-IIAAIKEA 102
              ESL KA   V  ++        +TLL  Q   ++ A ++A
Sbjct: 55  NQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDA 97

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 5  SKILFI-GGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          S +  I G TG IG    E    A  P         + G ++       ++  +N V  D
Sbjct: 1  SSVALIVGVTGIIGNSLAEILPLADTP----GGPWKVYGVARRTRPAWHEDNPINYVQCD 56

Query: 64 VLNHESLVKAIKQVDVVI 81
          + + +     +  +  V 
Sbjct: 57 ISDPDDSQAKLSPLTDVT 74

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPT--FVLVRESTISGPSKSQLLDHFKNLGVN 58
          M +K  +  +G +G  G+  ++  ++ G  +   ++ R        +    D      VN
Sbjct: 16 MQNK-SVFILGASGETGRVLLKEILEQGLFSKVTLIGR--------RKLTFDEEAYKNVN 66

Query: 59 LVIGDVLNHESLVKAIKQVDVVISTVGHTL 88
            + D    +    A +  DV    +G T 
Sbjct: 67 QEVVDFEKLDDYASAFQGHDVGFCCLGTTR 96

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 1   MASKSKILFI-GGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNL 59
           MA + K + + G TG  G   +  +   GH     V   ++ G    +L        V L
Sbjct: 1   MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH--SLKGLIAEELQ---AIPNVTL 55

Query: 60  VIGDVLN-HESLVKAIKQVDVV--ISTVGHTLLADQVK-IIAAIKEA 102
             G +LN    +    +   +    +T          K +  A K A
Sbjct: 56  FQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRA 102

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL--GVNLVIGD 63
          ++L  GG G+IG   VE  +  G    VL   +T  G          +N+  GV     D
Sbjct: 2  RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLAT--G--------KRENVPKGVPFFRVD 51

Query: 64 VLNHESLVKAIKQ--VDVVI 81
          + + E + +A ++     V 
Sbjct: 52 LRDKEGVERAFREFRPTHVS 71

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score = 43.3 bits (103), Expect = 9e-06
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          +IL  GG G +G   +E  +  GH   V+   +T     K ++L      G++++ G V 
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT----GKREVLPPVA--GLSVIEGSVT 75

Query: 66 NHESLVKAIKQ--VDVVI 81
          +   L +A        V+
Sbjct: 76 DAGLLERAFDSFKPTHVV 93

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 20/117 (17%)

Query: 4   KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG-----VN 58
           K ++   GGTG++G + +++ ++ G+     V  +  + P + + +    NL      ++
Sbjct: 1   KGRVCVTGGTGFLGSWIIKSLLENGYS----VNTTIRADPERKRDVSFLTNLPGASEKLH 56

Query: 59  LVIGDVLNHESLVKAIKQVDVVI---STVGHTLLADQVKII-AAIKEAEGASRGTLR 111
               D+ N +S   AI+    +    S +   +   +  +    +        G L 
Sbjct: 57  FFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVD-------GALG 106

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS---GPSKSQLLDHFKNLGVNLVIG 62
           I  IG  G +G+   +  VK G      V + T+     P             V+    
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSG----AVDARAA 71

Query: 63 DVLNHESLVKAIK-QVDVVI 81
          D+       K ++ + DV+ 
Sbjct: 72 DLSAPGEAEKLVEARPDVIF 91

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
             +L + G+G++ +  ++                T++  + +      K  G   +  D
Sbjct: 23 GKNVL-LLGSGFVAQPVIDTLAANDD------INVTVACRTLANAQALAKPSGSKAISLD 75

Query: 64 VLNHESLVKAIKQVDVVISTV 84
          V +  +L K +   DVVIS +
Sbjct: 76 VTDDSALDKVLADNDVVISLI 96

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHFKNLGVN- 58
          +   S +L  G  G++    VE  ++ G+     VR  T    SK   L   +       
Sbjct: 8  LPEGSLVLVTGANGFVASHVVEQLLEHGY----KVR-GTARSASKLANLQKRWDAKYPGR 62

Query: 59 ---LVIGDVLNHESLVKAIKQVDVVISTVGHT 87
              V+ D+L   +  + IK    V     H 
Sbjct: 63 FETAVVEDMLKQGAYDEVIKGAAGVA----HI 90

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 22/121 (18%)

Query: 1   MASKSK-ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG--- 56
           M S+S+ +   G +G+IG + V   ++ G+     VR +T+  P+  + + H  +L    
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERGYT----VR-ATVRDPTNVKKVKHLLDLPKAE 55

Query: 57  --VNLVIGDVLNHESLVKAIKQVDVVI---STVGHTLLADQVKII-AAIKEAEGASRGTL 110
             + L   D+ +  S  +AIK    V    + +       + ++I   I+       G L
Sbjct: 56  THLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIE-------GML 108

Query: 111 R 111
            
Sbjct: 109 G 109

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 15/87 (17%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           IL  GG GYIG   V+  V  G    V+    T         +      G     GD+ 
Sbjct: 3  SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQT----GHEDAITE----GAKFYNGDLR 54

Query: 66 NHESLVKAIKQ--VDVVI-----STVG 85
          +   L     Q  ++ V+     S VG
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVG 81

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 1   MASKSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF---KNL 55
           M    KI+ I G  +G  G+ T EA   AGH  +  +R+      S  + +  F    ++
Sbjct: 1   MVMSKKIILITGASSG-FGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDV 59

Query: 56  GVNLVIGDVLNHESLVKAIKQV-------DVVISTVGHTLLA 90
            +  +  DV +  S+ +AI Q+       DV+I   GH +  
Sbjct: 60  DLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFG 101

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 25/94 (26%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHP-----------TFVLVRESTISGPSKSQLL 49
          M++K  IL  GG GYIG  T    +  G+               + R   I+G +     
Sbjct: 2  MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKT----- 56

Query: 50 DHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI 81
                       DV +  +L +      +   I
Sbjct: 57 -------PAFHETDVSDERALARIFDAHPITAAI 83

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 1   MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
            A +  I  + G G IG+        +           T++    + L      +GV   
Sbjct: 2   NAMRWNIC-VVGAGKIGQMIAALLKTSS------NYSVTVADHDLAAL-AVLNRMGVATK 53

Query: 61  IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
             D  +   L KA+   D VIS     L      I  A K A
Sbjct: 54  QVDAKDEAGLAKALGGFDAVISAAPFFL---TPIIAKAAKAA 92

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ--LLDHFKNLGVN 58
          M     IL  GGTG  GK  V   +   +   ++V     S     Q  +   F +  + 
Sbjct: 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIV----YSRDELKQSEMAMEFNDPRMR 73

Query: 59 LVIGDVLNHESLVKAIKQVDVVI 81
            IGDV + E L  A++ VD+ I
Sbjct: 74 FFIGDVRDLERLNYALEGVDICI 96

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 13/80 (16%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
            + I G G +G          GH    L R                   GV  +I DV 
Sbjct: 4  SKILIAGCGDLGLELARRLTAQGHEVTGLRR-----SAQPMP-------AGVQTLIADVT 51

Query: 66 NHESLVKAIK-QVDVVISTV 84
            ++L   +  + ++++  V
Sbjct: 52 RPDTLASIVHLRPEILVYCV 71

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVL--VRESTISGPSKSQLLDHFKNLG---VN 58
            K+L  GG GYIG  TV   ++AG+   V+     +   G S  + L   + L    V 
Sbjct: 2  AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61

Query: 59 LVIGDVLNHESLVKAIKQ--VDVVI 81
              D+L+  +L +  K+     VI
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVI 86

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 2   ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVL-----VRESTISGPSKSQLLDHFKNLG 56
           A     L  G  G+IG   +E  +K       L       +  +           + N  
Sbjct: 25  AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSN-- 82

Query: 57  VNLVIGDVLNHESLVKAIKQVDVVI 81
              + GD+ N +    A   VD V+
Sbjct: 83  FKFIQGDIRNLDDCNNACAGVDYVL 107

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 5  SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL--GVNLVIG 62
          S I+  GG G+IG   V+   +  +   V+   S+  G        + + +     LV  
Sbjct: 2  SLIVVTGGAGFIGSHVVDKLSE-SNEIVVIDNLSS--G--------NEEFVNEAARLVKA 50

Query: 63 DVLNHESLVKAIKQVDVVI 81
          D+   + +   +K  + V 
Sbjct: 51 DLAA-DDIKDYLKGAEEVW 68

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 3   SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG----VN 58
            K     +GGTG++    V+  ++ G+     V  +T+  P   + + H   L     + 
Sbjct: 8   GKKTACVVGGTGFVASLLVKLLLQKGYA----VN-TTVRDPDNQKKVSHLLELQELGDLK 62

Query: 59  LVIGDVLNHESLVKAIKQVDVVI---STVGHTLLADQVKII-AAIKEAEGASRGTLR 111
           +   D+ +  S    I   D V    + V       +  +I  AI+       G + 
Sbjct: 63  IFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQ-------GVVN 112

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 7  ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN 66
          IL  G +G IG   V    +      V+   S I               G+  +  DV N
Sbjct: 2  ILVTGSSGQIGTELVPYLAEKYGKKNVIA--SDIVQRDTG---------GIKFITLDVSN 50

Query: 67 HESLVKAIKQ--VDVVI 81
           + + +A+++  +D + 
Sbjct: 51 RDEIDRAVEKYSIDAIF 67

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          KI   GGTG++G++ VE+    G+   +L R              +         + D  
Sbjct: 4  KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIG-----------NKAINDYEYRVSDYT 52

Query: 66 NHESLVKAIKQVDVVI 81
            E L+  +  VD V+
Sbjct: 53 L-EDLINQLNDVDAVV 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.92
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.92
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.91
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.9
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.9
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.89
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.89
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.89
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.89
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.89
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.89
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.89
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.89
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.88
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.88
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.88
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.88
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.88
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.88
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.88
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.88
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.88
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.87
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.87
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.87
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.87
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.87
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.87
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.87
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.87
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.87
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.86
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.86
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.86
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.86
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.86
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.86
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.86
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.86
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.86
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.86
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.86
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.86
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.86
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.86
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.85
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.85
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.85
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.85
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.85
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.85
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.85
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.85
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.85
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.85
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.85
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.85
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.84
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.84
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.84
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.84
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.84
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.84
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.84
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.84
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.83
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.83
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.83
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.83
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.83
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.83
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.82
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.82
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.82
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.82
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.82
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.81
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.81
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.81
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.81
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.81
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.81
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.81
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.81
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.81
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.8
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.8
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.8
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.8
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.8
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.8
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.8
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.8
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.8
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.8
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.8
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.8
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.8
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.79
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.79
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.79
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.79
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.79
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.79
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.79
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.79
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.79
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.79
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.79
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.79
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.79
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.79
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.79
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.79
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.79
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.79
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.79
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.79
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.79
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.79
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.78
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.78
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.78
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.78
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.78
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.78
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.78
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.78
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.78
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.78
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.78
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.78
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.78
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.78
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.78
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.78
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.78
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.78
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.77
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.77
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.77
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.77
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.77
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.77
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.77
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.77
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.77
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.77
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.77
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.77
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.77
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.77
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.77
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.77
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.77
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.77
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.77
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.77
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.77
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.77
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.77
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.77
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.77
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.77
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.77
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.76
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.76
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.76
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.76
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.76
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.76
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.76
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.76
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.76
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.76
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.76
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.76
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.76
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.76
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.76
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.76
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.76
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.76
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.76
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.76
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.76
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.76
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.76
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.76
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.76
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.75
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.75
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.75
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.75
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.75
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.75
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.75
1spx_A	278	Short-chain reductase family member (5L265); paral	99.75
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.75
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.75
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.75
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.75
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.75
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.75
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.75
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.75
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.75
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.75
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.75
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.75
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.74
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.74
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.74
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.74
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.74
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.74
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.74
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.74
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.74
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.74
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.74
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.74
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.73
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.73
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.73
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.73
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.73
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.73
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.73
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.73
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.73
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.73
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.73
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.73
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.73
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.73
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.73
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.72
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.72
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.72
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.72
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.72
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.72
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.72
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.72
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.72
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.72
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.72
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.72
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.71
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.71
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.71
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.71
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.71
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.71
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.71
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.71
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.71
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.71
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.7
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.7
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.7
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.7
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.7
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.69
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.69
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.69
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.69
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.69
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.69
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.69
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.68
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.68
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.68
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.68
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.68
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.67
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.67
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.67
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.67
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.67
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.66
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.66
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.66
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.66
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.66
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.66
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.65
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.65
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.65
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.64
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.64
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.62
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.61
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.6
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.6
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.59
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.57
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.56
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.52
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.52
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.4
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.4
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.39
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.36
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.36
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.36
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.32
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.32
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.32
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.29
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.27
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.25
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.24
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	99.23
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.23
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	99.21
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	99.2
1id1_A	153	Putative potassium channel protein; RCK domain, E.	99.19
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	99.17
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	99.15
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	99.15
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.15
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.08
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	99.03
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.03
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.93
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.87
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.86
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.85
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	98.84
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	98.82
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.8
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.8
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.78
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.77
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.73
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.7
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.65
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.65
4g65_A	461	TRK system potassium uptake protein TRKA; structur	98.63
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.49
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.49
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.49
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.49
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.49
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.48
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.48
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.46
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.42
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.41
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.39
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.38
1lnq_A	336	MTHK channels, potassium channel related protein;	98.37
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.36
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.36
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	98.35
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.32
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.29
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.24
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.23
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.22
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.22
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.19
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.19
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.16
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.16
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.15
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.15
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.15
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.12
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	98.12
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.12
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.11
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.11
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.11
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.1
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.1
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.1
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.09
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.07
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.07
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	98.07
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.06
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	98.04
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.03
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.02
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.01
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	98.01
4g65_A	461	TRK system potassium uptake protein TRKA; structur	98.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.99
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.99
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.98
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.97
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.95
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.95
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.95
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.95
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.95
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.94
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.94
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.93
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.93
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.92
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.92
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.92
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.91
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.91
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.9
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.9
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.9
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.9
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.89
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.89
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.89
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	97.89
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.88
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.88
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.87
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.87
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.86
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.84
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.84
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.84
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.84
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.84
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.83
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.83
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.83
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.83
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.83
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.81
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.8
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.8
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.79
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.78
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.77
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.76
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.76
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.76
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.74
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.72
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.72
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.71
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.71
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.7
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.69
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	97.69
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.69
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.67
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.67
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.66
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.66
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.65
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	97.65
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.64
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.64
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.64
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.63
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.63
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.62
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.62
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.61
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.61
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.61
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.6
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.6
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.59
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.59
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.59
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.58
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.58
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.57
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.57
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.56
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.56
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.56
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	97.56
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.55
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.55
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	97.55
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.54
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.54
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.54
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.53
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.53
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.53
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.52
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.52
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.52
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.52
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.51
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.51
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.51
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.51
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.5
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.49
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.49
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.49

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.4e-24  Score=156.44  Aligned_cols=136  Identities=19%  Similarity=0.263  Sum_probs=110.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |++||+|+||||||++|++++++|++.|++|++++|++...     ..+    ..++.++.+|++|++++.++++++|+|
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~~----~~~~~~~~~Dl~d~~~~~~~~~~~d~v   71 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI-----KIE----NEHLKVKKADVSSLDEVCEVCKGADAV   71 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC-----CCC----CTTEEEECCCTTCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc-----hhc----cCceEEEEecCCCHHHHHHHhcCCCEE
Confidence            77678999999999999999999999999999999984332     111    257899999999999999999999999


Q ss_pred             EEcCCCc---------chHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----cCCccchhhHhHhhhhHHHHHHH
Q 040431           81 ISTVGHT---------LLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----MTTTLDMLEMTELIDQKIFIYFW  146 (157)
Q Consensus        81 v~~a~~~---------~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  146 (157)
                      ||+|+..         +..++.++++++.+.+ +++||++||.+++...+..     ...+...|..+|...+.+ ...+
T Consensus        72 i~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~e~~-~~~~  149 (227)
T 3dhn_A           72 ISAFNPGWNNPDIYDETIKVYLTIIDGVKKAG-VNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFY-LNFL  149 (227)
T ss_dssp             EECCCC------CCSHHHHHHHHHHHHHHHTT-CSEEEEECCSTTSEEETTEEGGGTTCSCGGGHHHHHHHHHHH-HHTG
T ss_pred             EEeCcCCCCChhHHHHHHHHHHHHHHHHHHhC-CCEEEEeCChhhccCCCCCccccCCcchHHHHHHHHHHHHHH-HHHH
Confidence            9999987         3778999999999998 8999999998876543321     135678899999998866 4444


Q ss_pred             h
Q 040431          147 G  147 (157)
Q Consensus       147 ~  147 (157)
                      .
T Consensus       150 ~  150 (227)
T 3dhn_A          150 M  150 (227)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.92  E-value=1.3e-23  Score=159.53  Aligned_cols=143  Identities=15%  Similarity=0.216  Sum_probs=115.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      |+++|+|+|||||||||++++++|++.|++|++++|+.... .+..+.+......++.++.+|++|++++.++++  ++|
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSK-REAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSC-THHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcch-HHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCc
Confidence            55568999999999999999999999999999999986543 333333333345678999999999999999998  899


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELI  137 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~  137 (157)
                      +|||+|+...               +.++.++++++.+.+ .++||++||.++|+.....      ...+...|..+|.+
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~~  159 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA-VKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLM  159 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHHH
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHHH
Confidence            9999999864               456889999999988 8899999999998654321      13466799999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .+.+...+
T Consensus       160 ~e~~~~~~  167 (341)
T 3enk_A          160 AEQILRDV  167 (341)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98885443

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.91  E-value=3.1e-23  Score=158.09  Aligned_cols=140  Identities=16%  Similarity=0.167  Sum_probs=113.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC----CCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN----LGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      +|+|+|||||||||++|+++|++.|++|++++|..... ......+.....    .++.++.+|+.|++++.++++++|+
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGH-QYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-HHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCc-hhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            68999999999999999999999999999999986543 222222222111    5799999999999999999999999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhhh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~~  138 (157)
                      |||+|+...               +.++.++++++.+.+ +++|||+||.++|+..+...      ..+...|+.+|...
T Consensus       104 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~  182 (351)
T 3ruf_A          104 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVN  182 (351)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHH
T ss_pred             EEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEecHHhcCCCCCCCCccCCCCCCCChhHHHHHHH
Confidence            999999743               556889999999998 89999999999997543211      35678899999999


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      +.+...+
T Consensus       183 E~~~~~~  189 (351)
T 3ruf_A          183 EIYAQVY  189 (351)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8885543

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.90  E-value=1.1e-22  Score=154.88  Aligned_cols=140  Identities=17%  Similarity=0.212  Sum_probs=110.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      |++||+|+|||||||||++++++|++.  |++|++++|.......+.   +.+....++.++.+|++|++++.++++++|
T Consensus         1 Ms~m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN---LEAILGDRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             --CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG---TGGGCSSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CCcCcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhH---HhhhccCCeEEEECCCCCHHHHHHHhhcCC
Confidence            766789999999999999999999999  899999999753221222   233334678999999999999999999999


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-------------c-----cC
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-------------E-----MT  125 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-------------~-----~~  125 (157)
                      +|||+|+...               +.++.++++++.+.+ . +|||+||.++|+....             .     ..
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~  155 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-I-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY  155 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence            9999999763               455889999999987 6 9999999998865321             0     13


Q ss_pred             CccchhhHhHhhhhHHHHHH
Q 040431          126 TTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~  145 (157)
                      .+...|..+|...+.+...+
T Consensus       156 ~~~~~Y~~sK~~~e~~~~~~  175 (348)
T 1oc2_A          156 NPSSPYSSTKAASDLIVKAW  175 (348)
T ss_dssp             CCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHH
Confidence            45678999999988885443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.90  E-value=1.1e-22  Score=150.38  Aligned_cols=132  Identities=10%  Similarity=0.133  Sum_probs=110.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |+ |++|+||||+|+||+++++.|++.|++|++++|+.....           ..++.++.+|++|++++.++++++|+|
T Consensus         1 m~-~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~D~v   68 (267)
T 3rft_A            1 MA-MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVAGCDGI   68 (267)
T ss_dssp             CC-EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CC-CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHcCCCEE
Confidence            54 678999999999999999999999999999999854321           457899999999999999999999999


Q ss_pred             EEcCCCcc-----------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-------cCCccchhhHhHhhhhHHH
Q 040431           81 ISTVGHTL-----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-------MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        81 v~~a~~~~-----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  142 (157)
                      ||+||...           +.++.++++++.+.+ .++||++||..+|+..+..       ...+...|..+|.+.+.+.
T Consensus        69 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~  147 (267)
T 3rft_A           69 VHLGGISVEKPFEQILQGNIIGLYNLYEAARAHG-QPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLA  147 (267)
T ss_dssp             EECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             EECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence            99999854           666889999999987 8999999999988643221       1456688999999988885


Q ss_pred             HHH
Q 040431          143 IYF  145 (157)
Q Consensus       143 ~~~  145 (157)
                      ..+
T Consensus       148 ~~~  150 (267)
T 3rft_A          148 RMY  150 (267)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.89  E-value=3.1e-22  Score=151.89  Aligned_cols=133  Identities=22%  Similarity=0.201  Sum_probs=105.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|+|+|||||||||++++++|++.|++|++++|+...     .+.+   ...++.++.+|++|++++.++++++|+|||+
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----~~~l---~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQ-----IQRL---AYLEPECRVAEMLDHAGLERALRGLDGVIFS   84 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSC-----GGGG---GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHh-----hhhh---ccCCeEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            4689999999999999999999999999999998432     2212   2236899999999999999999999999999


Q ss_pred             CCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-----cc--CCc----cchhhHhHhhhh
Q 040431           84 VGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-----EM--TTT----LDMLEMTELIDQ  139 (157)
Q Consensus        84 a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-----~~--~~~----~~~~~~~~~~~~  139 (157)
                      |+...             +.++.++++++.+.+ +++|||+||.++|+..+.     +.  ..+    ...|..+|...+
T Consensus        85 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~~~~~Y~~sK~~~e  163 (342)
T 2x4g_A           85 AGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-VPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALD  163 (342)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHT-CSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCTTSCHHHHHHHHHH
T ss_pred             CccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHhhCcCCCCCCCCCCCCCCccccccChHHHHHHHHH
Confidence            99643             556889999999988 899999999999875432     11  233    678999999998


Q ss_pred             HHHHHH
Q 040431          140 KIFIYF  145 (157)
Q Consensus       140 ~~~~~~  145 (157)
                      .+...+
T Consensus       164 ~~~~~~  169 (342)
T 2x4g_A          164 EQAREQ  169 (342)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            885553

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.89  E-value=2.4e-22  Score=151.08  Aligned_cols=129  Identities=20%  Similarity=0.239  Sum_probs=107.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|+|+|||||||+|++++++|++.|++|++++|++..     .+ +     .++.++.+|++ ++++.++++++|+|||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----~~-~-----~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN-----KA-I-----NDYEYRVSDYT-LEDLINQLNDVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc-----cc-C-----CceEEEEcccc-HHHHHHhhcCCCEEEEc
Confidence            6899999999999999999999999999999998221     11 1     17899999999 99999999999999999


Q ss_pred             CCCcc-----------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHHHHHH
Q 040431           84 VGHTL-----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus        84 a~~~~-----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      |+...           +.++.++++++.+.+ +++|||+||.++|+.....      ...+...|+.+|...|.+...+
T Consensus        70 a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  147 (311)
T 3m2p_A           70 AATRGSQGKISEFHDNEILTQNLYDACYENN-ISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIY  147 (311)
T ss_dssp             CCCCCSSSCGGGTHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Confidence            99853           667899999999998 8999999999998754311      1456789999999998885554

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.89  E-value=3.4e-22  Score=152.13  Aligned_cols=127  Identities=17%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|+|+|||||||||++|++.|++.|++|++++|+...              .++.++.+|+.|++++.++++++|+|||+
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIMGVSAVLHL   84 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHhCCCEEEEC
Confidence            5789999999999999999999999999999998432              46788999999999999999999999999


Q ss_pred             CCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccC-------CCc-cCCccchhhHhHhhhhHHH
Q 040431           84 VGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL-------SSE-MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        84 a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+...             +.++.++++++.+.+ +++|||+||.++|+..       ... ...+...|+.+|...|.+.
T Consensus        85 A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~  163 (347)
T 4id9_A           85 GAFMSWAPADRDRMFAVNVEGTRRLLDAASAAG-VRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELV  163 (347)
T ss_dssp             CCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CcccCcchhhHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHH
Confidence            99864             456899999999988 8999999999999762       111 1456788999999998885


Q ss_pred             HHH
Q 040431          143 IYF  145 (157)
Q Consensus       143 ~~~  145 (157)
                      ..+
T Consensus       164 ~~~  166 (347)
T 4id9_A          164 RFH  166 (347)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.89  E-value=3.2e-22  Score=153.71  Aligned_cols=134  Identities=14%  Similarity=0.207  Sum_probs=108.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC-ChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL-NHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~~~~d~vv   81 (157)
                      ||+|+|||||||||++|+++|++. |++|++++|+....     ..+  ....+++++.+|++ |++.+.++++++|+||
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~-----~~~--~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi   96 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL-----GDL--VKHERMHFFEGDITINKEWVEYHVKKCDVIL   96 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTT-----GGG--GGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhh-----hhh--ccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence            679999999999999999999998 99999999985332     211  12357999999999 9999999999999999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------C-------CccchhhH
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------T-------TTLDMLEM  133 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~-------~~~~~~~~  133 (157)
                      |+|+...               +.++.++++++.+.+  ++|||+||.++|+......      +       .+...|+.
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~  174 (372)
T 3slg_A           97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYAC  174 (372)
T ss_dssp             ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHH
T ss_pred             EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHH
Confidence            9999765               344688999999987  7999999999997643221      0       34558999


Q ss_pred             hHhhhhHHHHHHH
Q 040431          134 TELIDQKIFIYFW  146 (157)
Q Consensus       134 ~~~~~~~~~~~~~  146 (157)
                      +|...|.+...+.
T Consensus       175 sK~~~E~~~~~~~  187 (372)
T 3slg_A          175 SKQLMDRVIWGYG  187 (372)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998855543

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.89  E-value=7.6e-22  Score=150.15  Aligned_cols=141  Identities=18%  Similarity=0.236  Sum_probs=110.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC-----CCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI-----SGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~   76 (157)
                      +|+|+|||||||||++++++|++.|++|++++|....     ...+..+.+......++.++.+|++|++++.++++  +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence            6799999999999999999999999999999986543     01233333333234578999999999999999998  8


Q ss_pred             cCEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCc-cchhhHh
Q 040431           77 VDVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTT-LDMLEMT  134 (157)
Q Consensus        77 ~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~-~~~~~~~  134 (157)
                      +|+|||+|+...               +.++.++++++.+.+ +++||++||.++|+.....      ...+ ...|..+
T Consensus        82 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y~~s  160 (348)
T 1ek6_A           82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS  160 (348)
T ss_dssp             EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred             CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhCCCCCCCcCCCCCCCCCCCchHHH
Confidence            999999999753               456889999999887 8899999999998753211      1123 6789999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |...+.+...+
T Consensus       161 K~~~e~~~~~~  171 (348)
T 1ek6_A          161 KFFIEEMIRDL  171 (348)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998885544

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.89  E-value=5.4e-22  Score=140.44  Aligned_cols=131  Identities=26%  Similarity=0.279  Sum_probs=107.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |+ .|+|+||||||++|++++++|++.|++|++++|++...     .   .....++.++.+|++|++++.++++++|+|
T Consensus         1 M~-~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~-----~---~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v   71 (206)
T 1hdo_A            1 MA-VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-----P---SEGPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (206)
T ss_dssp             CC-CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS-----C---SSSCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CC-CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhc-----c---cccCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            65 48999999999999999999999999999999984322     1   111457899999999999999999999999


Q ss_pred             EEcCCCcc--------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           81 ISTVGHTL--------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        81 v~~a~~~~--------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ||+++...        ...+.++++++.+.+ .++||++||.++|+..+.. +.+...|..+|...+.+.
T Consensus        72 i~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~Ss~~~~~~~~~~-~~~~~~y~~~K~~~e~~~  139 (206)
T 1hdo_A           72 IVLLGTRNDLSPTTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLWDPTKV-PPRLQAVTDDHIRMHKVL  139 (206)
T ss_dssp             EECCCCTTCCSCCCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCTTCS-CGGGHHHHHHHHHHHHHH
T ss_pred             EECccCCCCCCccchHHHHHHHHHHHHHHhC-CCeEEEEeeeeeccCcccc-cccchhHHHHHHHHHHHH
Confidence            99999754        467899999999988 8999999999888754322 125678888888887774

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.89  E-value=6.7e-22  Score=150.47  Aligned_cols=139  Identities=16%  Similarity=0.186  Sum_probs=108.7

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhcC--c
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIKQ--V   77 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~~--~   77 (157)
                      ++|+|+|||||||||++|+++|++.|  ++|++++|........   .+... ...++.++.+|++|++++.+++++  +
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   99 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN---NVKSIQDHPNYYFVKGEIQNGELLEHVIKERDV   99 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGG---GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchh---hhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCC
Confidence            35799999999999999999999999  5677777664322122   22222 235799999999999999999986  9


Q ss_pred             CEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-------cCCccchhhHhH
Q 040431           78 DVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-------MTTTLDMLEMTE  135 (157)
Q Consensus        78 d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~~~~~~~  135 (157)
                      |+|||+|+...               +.++.++++++.+.+ +++|||+||.++|+..+..       ...+...|+.+|
T Consensus       100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK  178 (346)
T 4egb_A          100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP-HIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSK  178 (346)
T ss_dssp             CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHST-TSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHHHHHH
T ss_pred             CEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChhHHHH
Confidence            99999999754               456899999999998 8999999999999765211       135668899999


Q ss_pred             hhhhHHHHHH
Q 040431          136 LIDQKIFIYF  145 (157)
Q Consensus       136 ~~~~~~~~~~  145 (157)
                      ...|.+...+
T Consensus       179 ~~~E~~~~~~  188 (346)
T 4egb_A          179 ASADMIALAY  188 (346)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998885554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.89  E-value=1.5e-22  Score=145.32  Aligned_cols=128  Identities=20%  Similarity=0.172  Sum_probs=106.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~~~d~vv~~   83 (157)
                      |+|+||||||++|++++++|++.|++|++++|+....     +.     ..++.++.+|++| ++++.++++++|+|||+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-----~~-----~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV-----PQ-----YNNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS-----CC-----CTTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch-----hh-----cCCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            4899999999999999999999999999999984322     11     1579999999999 99999999999999999


Q ss_pred             CCCcc-------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc--cCCccchhhHhHhhhhHHHH
Q 040431           84 VGHTL-------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE--MTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        84 a~~~~-------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  143 (157)
                      ||...       ..++.++++++++.+ +++||++||.+++...+..  ...+...|..+|...+.+..
T Consensus        71 ag~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~~~~~e~~~~~~~~Y~~sK~~~e~~~~  138 (219)
T 3dqp_A           71 SGSGGKSLLKVDLYGAVKLMQAAEKAE-VKRFILLSTIFSLQPEKWIGAGFDALKDYYIAKHFADLYLT  138 (219)
T ss_dssp             CCCTTSSCCCCCCHHHHHHHHHHHHTT-CCEEEEECCTTTTCGGGCCSHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCcEeEeHHHHHHHHHHHHHhC-CCEEEEECcccccCCCcccccccccccHHHHHHHHHHHHHH
Confidence            99864       777999999999988 8999999998877543221  13346789999998888753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.88  E-value=1.1e-21  Score=149.85  Aligned_cols=140  Identities=16%  Similarity=0.158  Sum_probs=111.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-h---cCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-F---KNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~---~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      +|+|+|||||||||++++++|++.|++|++++|+.... .+.++.+.+ .   ...++.++.+|++|++++.++++++|+
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  105 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGH-QRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY  105 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-HHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccc-hhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence            67999999999999999999999999999999975432 222322211 1   125789999999999999999999999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhhh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~~  138 (157)
                      |||+|+...               +.++.++++++.+.+ +++|||+||.++|+..+...      ..+...|+.+|...
T Consensus       106 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~  184 (352)
T 1sb8_A          106 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVN  184 (352)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHH
T ss_pred             EEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhcCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence            999999753               456889999999987 89999999999987543211      24577899999999


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      +.+...+
T Consensus       185 e~~~~~~  191 (352)
T 1sb8_A          185 ELYADVF  191 (352)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8885443

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.88  E-value=1.3e-21  Score=148.22  Aligned_cols=141  Identities=15%  Similarity=0.212  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |+ +|+|+|||||||||++++++|++.|  ++|++++|.......+.+   .+.. ..++.++.+|++|++++.+++.++
T Consensus         1 M~-~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   76 (336)
T 2hun_A            1 MH-SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL---KDLEDDPRYTFVKGDVADYELVKELVRKV   76 (336)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG---TTTTTCTTEEEEECCTTCHHHHHHHHHTC
T ss_pred             CC-CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH---hhhccCCceEEEEcCCCCHHHHHHHhhCC
Confidence            65 5789999999999999999999997  899999987432212222   2221 357899999999999999999999


Q ss_pred             CEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHh
Q 040431           78 DVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTEL  136 (157)
Q Consensus        78 d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~  136 (157)
                      |+|||+|+...               +.++.++++++.+.+..++||++||.++|+.....      ...+...|..+|.
T Consensus        77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~  156 (336)
T 2hun_A           77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKA  156 (336)
T ss_dssp             SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHHHH
T ss_pred             CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHHHH
Confidence            99999999853               45688999999988623799999999988754211      1345678999999


Q ss_pred             hhhHHHHHH
Q 040431          137 IDQKIFIYF  145 (157)
Q Consensus       137 ~~~~~~~~~  145 (157)
                      ..+.+...+
T Consensus       157 ~~e~~~~~~  165 (336)
T 2hun_A          157 ASDMLVLGW  165 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998885443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.88  E-value=9.9e-22  Score=150.63  Aligned_cols=140  Identities=12%  Similarity=0.167  Sum_probs=110.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh--CCCcEEEEecCCCCCC-----CchhhHhhhhcCCCeEEEEccCCChHHHHHH-hc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK--AGHPTFVLVRESTISG-----PSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~--~g~~v~~~~r~~~~~~-----~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~   75 (157)
                      +|+|+|||||||||++++++|++  .|++|++++|......     .+...........++.++.+|++|++++.++ ..
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   89 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKL   89 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHTTS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhhcc
Confidence            57999999999999999999999  8999999999754110     0111111223345689999999999999999 77


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-----CCccchhhHhHhh
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-----TTTLDMLEMTELI  137 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-----~~~~~~~~~~~~~  137 (157)
                      ++|+|||+|+...             +.++.++++++.+.+ .+ |||+||.++|+......     ..+...|+.+|..
T Consensus        90 ~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~-~V~~SS~~vyg~~~~~~~E~~~~~p~~~Y~~sK~~  167 (362)
T 3sxp_A           90 HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK-AK-VIYASSAGVYGNTKAPNVVGKNESPENVYGFSKLC  167 (362)
T ss_dssp             CCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTT-CE-EEEEEEGGGGCSCCSSBCTTSCCCCSSHHHHHHHH
T ss_pred             CCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcC-Cc-EEEeCcHHHhCCCCCCCCCCCCCCCCChhHHHHHH
Confidence            9999999999754             567899999999987 55 99999999987654322     4567789999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .+.+...+
T Consensus       168 ~E~~~~~~  175 (362)
T 3sxp_A          168 MDEFVLSH  175 (362)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            98885444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.88  E-value=4.3e-22  Score=143.10  Aligned_cols=131  Identities=14%  Similarity=0.116  Sum_probs=106.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHH-hCCCcEEEEecCCCCCCCc-hhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASV-KAGHPTFVLVRESTISGPS-KSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~-~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |++|+||||||++|++++++|+ +.|++|++++|+     ++ +++.+.. ...++.++.+|++|++++.++++++|+||
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~-----~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQ-----LKTRIPPEII-DHERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESS-----HHHHSCHHHH-TSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecC-----ccccchhhcc-CCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            4459999999999999999999 899999999998     44 3333221 34679999999999999999999999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc----CCccc-hhhHhHhhhhHHH
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM----TTTLD-MLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~  142 (157)
                      |++|..+.. ++++++++++.+ .++||++||.+++...+...    ..... .|..+|...+.++
T Consensus        79 ~~ag~~n~~-~~~~~~~~~~~~-~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~y~~~K~~~e~~~  142 (221)
T 3r6d_A           79 VGAMESGSD-MASIVKALSRXN-IRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVL  142 (221)
T ss_dssp             ESCCCCHHH-HHHHHHHHHHTT-CCEEEEEEETTTTSCSCHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             EcCCCCChh-HHHHHHHHHhcC-CCeEEEEeeceecCCCCcccccccccccccHHHHHHHHHHHHH
Confidence            999987777 999999999988 89999999999887544322    11122 6888888777663

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.88  E-value=1.3e-21  Score=148.40  Aligned_cols=140  Identities=14%  Similarity=0.208  Sum_probs=109.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhcC--c
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIKQ--V   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~~--~   77 (157)
                      |+ +|+|+|||||||||++++++|++.|++|++++|+......   ..+... ...++.++.+|++|++++.+++++  +
T Consensus         1 m~-~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   76 (345)
T 2z1m_A            1 MS-GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS---WRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQP   76 (345)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT---HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCC
T ss_pred             CC-CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc---ccHhhccccCceeEEECCCCCHHHHHHHHHhcCC
Confidence            54 6899999999999999999999999999999998654311   122222 124688999999999999999985  6


Q ss_pred             CEEEEcCCCcc---------------hHHHHHHHHHHHHhcCC-ccEEEeccccccccCCC------ccCCccchhhHhH
Q 040431           78 DVVISTVGHTL---------------LADQVKIIAAIKEAEGA-SRGTLRTQKGKMSSLSS------EMTTTLDMLEMTE  135 (157)
Q Consensus        78 d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~-~~~v~~Ss~~~~~~~~~------~~~~~~~~~~~~~  135 (157)
                      |+|||+|+...               +.++.++++++.+.+ . ++||++||..+|+....      ....+...|+.+|
T Consensus        77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK  155 (345)
T 2z1m_A           77 DEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK-PDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAK  155 (345)
T ss_dssp             SEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred             CEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHH
Confidence            99999999753               455889999999877 6 89999999999875332      1135677899999


Q ss_pred             hhhhHHHHHH
Q 040431          136 LIDQKIFIYF  145 (157)
Q Consensus       136 ~~~~~~~~~~  145 (157)
                      ...+.+...+
T Consensus       156 ~~~e~~~~~~  165 (345)
T 2z1m_A          156 LFGHWITVNY  165 (345)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988875443

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.88  E-value=2.7e-21  Score=146.09  Aligned_cols=133  Identities=20%  Similarity=0.338  Sum_probs=107.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      ||+|+|||||||||++++++|++.|++|++++|..... .      ... ..++.++.+|+.|++++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~------~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGH-E------DAI-TEGAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-G------GGS-CTTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCc-h------hhc-CCCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            46899999999999999999999999999999875432 1      111 2368899999999999999998  899999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhH
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQK  140 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~  140 (157)
                      |+|+...               +.++.++++++.+.+ +++||++||.++|+.....      ...+...|..+|...+.
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~  151 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEK  151 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHHHHHH
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcC-CCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHHHHHH
Confidence            9999763               456889999999987 8899999999998753211      12456889999999988


Q ss_pred             HHHHH
Q 040431          141 IFIYF  145 (157)
Q Consensus       141 ~~~~~  145 (157)
                      +...+
T Consensus       152 ~~~~~  156 (330)
T 2c20_A          152 MLHWY  156 (330)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            85544

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.88  E-value=1.8e-21  Score=147.85  Aligned_cols=139  Identities=14%  Similarity=0.229  Sum_probs=107.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      ||+|+|||||||||++++++|++.|++|++++|..........+.+..  ..++.++.+|++|++++.+++++  +|+||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS--LGNFEFVHGDIRNKNDVTRLITKYMPDSCF   78 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc--CCceEEEEcCCCCHHHHHHHHhccCCCEEE
Confidence            468999999999999999999999999999998632211111222221  23588999999999999999987  99999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCc-cEEEeccccccccCCCc----------------------
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGAS-RGTLRTQKGKMSSLSSE----------------------  123 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~----------------------  123 (157)
                      |+|+...               +.++.++++++.+.+ .+ +||++||.++|+.....                      
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~  157 (347)
T 1orr_A           79 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST  157 (347)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTS
T ss_pred             ECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEeccHHHhCCCCcCCcccccccccccccccCccccC
Confidence            9999753               455889999999987 64 99999999988743210                      


Q ss_pred             cCCccchhhHhHhhhhHHHHHH
Q 040431          124 MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      ...+...|..+|...+.+...+
T Consensus       158 ~~~~~~~Y~~sK~~~E~~~~~~  179 (347)
T 1orr_A          158 QLDFHSPYGCSKGAADQYMLDY  179 (347)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHHHHHHH
Confidence            1246678999999998885554

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.88  E-value=1.4e-21  Score=146.39  Aligned_cols=140  Identities=44%  Similarity=0.614  Sum_probs=104.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC-CCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS-GPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |++|++|+||||||++|++++++|++.|++|++++|+.... .+++.+.+..+...+++++.+|++|++++.++++++|+
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCE
Confidence            66578999999999999999999999999999999986542 13344444444456899999999999999999999999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |||+++......+.++++++.+.+.+++||+ |+.+...............| .+|...+.+.
T Consensus        81 vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~p~~~~y-~sK~~~e~~~  141 (308)
T 1qyc_A           81 VISTVGSLQIESQVNIIKAIKEVGTVKRFFP-SEFGNDVDNVHAVEPAKSVF-EVKAKVRRAI  141 (308)
T ss_dssp             EEECCCGGGSGGGHHHHHHHHHHCCCSEEEC-SCCSSCTTSCCCCTTHHHHH-HHHHHHHHHH
T ss_pred             EEECCcchhhhhHHHHHHHHHhcCCCceEee-cccccCccccccCCcchhHH-HHHHHHHHHH
Confidence            9999998777788999999999864688875 44332111101111123466 7777766663

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.88  E-value=2.6e-21  Score=146.49  Aligned_cols=139  Identities=14%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      +|+|+|||||||||++++++|++.|++|++++|+.........+.+.  ...++.++.+|++|++++.+++++  +|+||
T Consensus        14 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi   91 (335)
T 1rpn_A           14 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG--IEGDIQYEDGDMADACSVQRAVIKAQPQEVY   91 (335)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc--ccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence            68999999999999999999999999999999986543222222111  234688999999999999999985  79999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCC-ccEEEeccccccccCCCc------cCCccchhhHhHhhhh
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGA-SRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQ  139 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~-~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~  139 (157)
                      |+|+...               +.++.++++++.+.+ + ++||++||.++|+..+..      ...+...|+.+|...+
T Consensus        92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e  170 (335)
T 1rpn_A           92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS-PETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGH  170 (335)
T ss_dssp             ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHH
T ss_pred             ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHHHHH
Confidence            9999754               345789999999987 6 899999999998754321      1345678999999998


Q ss_pred             HHHHHH
Q 040431          140 KIFIYF  145 (157)
Q Consensus       140 ~~~~~~  145 (157)
                      .+...+
T Consensus       171 ~~~~~~  176 (335)
T 1rpn_A          171 WITVNY  176 (335)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            885543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.87  E-value=2.8e-22  Score=149.12  Aligned_cols=126  Identities=20%  Similarity=0.229  Sum_probs=106.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC-cCE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ-VDV   79 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-~d~   79 (157)
                      |+ +|+|+||| +||||++|+++|++.|++|++++|+....            ..++.++.+|+.|++++.+++++ +|+
T Consensus         1 M~-~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~~d~   66 (286)
T 3gpi_A            1 MS-LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVHLRPEI   66 (286)
T ss_dssp             -C-CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGGGCCSE
T ss_pred             CC-CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhcCCCCE
Confidence            65 78999999 59999999999999999999999985432            35789999999999999999987 999


Q ss_pred             EEEcCCCcc----------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHH
Q 040431           80 VISTVGHTL----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        80 vv~~a~~~~----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  141 (157)
                      |||+|+...          +.++.++++++.+.+ +++|||+||.++|+.....      ...+...|+.+|...|.+
T Consensus        67 vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~  143 (286)
T 3gpi_A           67 LVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAP-LQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEAL  143 (286)
T ss_dssp             EEECHHHHHHC-----CCSHHHHHHHHHHTTTSC-CCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCC-CCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhHHHHHHHHH
Confidence            999998743          667999999999887 8999999999999764321      145678999999998877

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.87  E-value=6.1e-21  Score=144.65  Aligned_cols=138  Identities=14%  Similarity=0.218  Sum_probs=109.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC---C---CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA---G---HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~---g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      |+|+|||||||||++++++|++.   |   ++|++++|.......+.++.+.  ...++.++.+|++|++++.+++.++|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD--ADPRLRFVHGDIRDAGLLARELRGVD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT--TCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcc--cCCCeEEEEcCCCCHHHHHHHhcCCC
Confidence            48999999999999999999997   8   9999999975322122222111  13578999999999999999999999


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELI  137 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~  137 (157)
                      +|||+|+...               +.++.++++++.+.+ +++|||+||.++|+.....      ...+...|..+|..
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~-~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~  157 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAG  157 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHHH
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHHHHH
Confidence            9999999753               456889999999988 8899999999988754211      13457789999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .+.+...+
T Consensus       158 ~e~~~~~~  165 (337)
T 1r6d_A          158 SDLVARAY  165 (337)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88885443

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.87  E-value=3.6e-21  Score=148.55  Aligned_cols=133  Identities=14%  Similarity=0.106  Sum_probs=107.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ||+|+|||||||||++++++|++.|++|++++|+......        ....++.++.+|++|++++.++++++|+|||+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~  100 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--------EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNL  100 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--------GGGTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh--------hccCCceEEECCCCCHHHHHHHhCCCCEEEEC
Confidence            6799999999999999999999999999999998543211        11246889999999999999999999999999


Q ss_pred             CCCcc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC----------c---cCCccchhhHh
Q 040431           84 VGHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS----------E---MTTTLDMLEMT  134 (157)
Q Consensus        84 a~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~----------~---~~~~~~~~~~~  134 (157)
                      |+...                +.++.++++++.+.+ +++|||+||.++|+....          .   ...+...|..+
T Consensus       101 A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~s  179 (379)
T 2c5a_A          101 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLE  179 (379)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHH
T ss_pred             ceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHH
Confidence            99642                345789999999887 889999999998874321          0   12456789999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |...+.+...+
T Consensus       180 K~~~E~~~~~~  190 (379)
T 2c5a_A          180 KLATEELCKHY  190 (379)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988875443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.87  E-value=2.8e-21  Score=145.06  Aligned_cols=140  Identities=37%  Similarity=0.547  Sum_probs=104.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |+++|+|+||||||++|++++++|++.|++|++++|+.+...+++.+.+..+...+++++.+|+.|++++.++++++|+|
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            66578999999999999999999999999999999986543233444444444567999999999999999999999999


Q ss_pred             EEcCCCc----chHHHHHHHHHHHHhcCCccEEEeccccccccC-CCccCCccchhhHhHhhhhHHH
Q 040431           81 ISTVGHT----LLADQVKIIAAIKEAEGASRGTLRTQKGKMSSL-SSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        81 v~~a~~~----~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ||+++..    ....+.++++++.+.+.+++||+ |+.+..... ..........| .+|...+.+.
T Consensus        81 i~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~~p~~~~y-~sK~~~e~~~  145 (313)
T 1qyd_A           81 ISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLP-SEFGMDPDIMEHALQPGSITF-IDKRKVRRAI  145 (313)
T ss_dssp             EECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEEC-SCCSSCTTSCCCCCSSTTHHH-HHHHHHHHHH
T ss_pred             EECCccccchhhHHHHHHHHHHHHhcCCCceEEe-cCCcCCccccccCCCCCcchH-HHHHHHHHHH
Confidence            9999987    46778999999999863688886 443221111 01111224567 7788777663

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.87  E-value=1.7e-21  Score=146.19  Aligned_cols=130  Identities=16%  Similarity=0.234  Sum_probs=106.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+|||||||||++++++|++.|++|++++|.+...        ......++.++.+|+.|++ +.+++++ |+|||+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A   70 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGR--------REFVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFA   70 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCC--------GGGSCTTSEEECCCTTSTT-TTTTCCC-SEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCc--------hhhcCCCceEEECccccHH-HHhhcCC-CEEEECC
Confidence            5899999999999999999999999999999985432        1112457899999999998 8888888 9999999


Q ss_pred             CCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC------ccCCccchhhHhHhhhhHHHH
Q 040431           85 GHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS------EMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        85 ~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      +...               +.++.++++++.+.+ +++|||+||.++|+..+.      ....+...|+.+|...+.+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~  149 (312)
T 3ko8_A           71 ANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCA  149 (312)
T ss_dssp             SSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             CCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence            9642               566889999999998 889999999999975432      114567899999999988854


Q ss_pred             HH
Q 040431          144 YF  145 (157)
Q Consensus       144 ~~  145 (157)
                      .+
T Consensus       150 ~~  151 (312)
T 3ko8_A          150 TY  151 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.87  E-value=6.3e-21  Score=145.72  Aligned_cols=139  Identities=15%  Similarity=0.177  Sum_probs=108.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      +|+|+|||||||||++++++|++.|++|++++|+.... ....+.+.  ...++.++.+|++|++++.+++++  +|+||
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   85 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV-PSLFETAR--VADGMQSEIGDIRDQNKLLESIREFQPEIVF   85 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS-SCHHHHTT--TTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCccc-chhhHhhc--cCCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence            57999999999999999999999999999999985443 11111111  134789999999999999999986  89999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC--c-----cCCccchhhHhHhhhh
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS--E-----MTTTLDMLEMTELIDQ  139 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~--~-----~~~~~~~~~~~~~~~~  139 (157)
                      |+|+...               +.++.++++++.+.+.+++||++||..+|+....  .     ...+...|..+|...+
T Consensus        86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  165 (357)
T 1rkx_A           86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAE  165 (357)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHH
T ss_pred             ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHHHHH
Confidence            9999642               4557889999988753689999999999875432  1     1346778999999998


Q ss_pred             HHHHHH
Q 040431          140 KIFIYF  145 (157)
Q Consensus       140 ~~~~~~  145 (157)
                      .+...+
T Consensus       166 ~~~~~~  171 (357)
T 1rkx_A          166 LVTSSY  171 (357)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            885443

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.87  E-value=8.1e-21  Score=144.05  Aligned_cols=139  Identities=19%  Similarity=0.331  Sum_probs=107.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+|+|||||||||++++++|++.|++|++++|..... .+..+.+......++.++.+|++|++++.++++  ++|+|||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih   79 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSK-RSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-TTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcc-hhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEE
Confidence            4899999999999999999999999999998764332 233333333324568899999999999999987  4999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-----cc-C-CccchhhHhHhhhhH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-----EM-T-TTLDMLEMTELIDQK  140 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-----~~-~-~~~~~~~~~~~~~~~  140 (157)
                      +||...               +.++.++++++.+.+ .++||++||.++|+....     .. . .+...|..+|.+.+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~  158 (338)
T 1udb_A           80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQ  158 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHH
T ss_pred             CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHHH
Confidence            999743               455788999998887 889999999998864321     11 1 226789999999988


Q ss_pred             HHHHH
Q 040431          141 IFIYF  145 (157)
Q Consensus       141 ~~~~~  145 (157)
                      +...+
T Consensus       159 ~~~~~  163 (338)
T 1udb_A          159 ILTDL  163 (338)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            85443

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.87  E-value=6.8e-21  Score=146.52  Aligned_cols=140  Identities=16%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh----cCCCeEEEEccCCChHHHHHHhcC--cC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF----KNLGVNLVIGDVLNHESLVKAIKQ--VD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~--~d   78 (157)
                      ++|+|||||||||++++++|++.|++|++++|+......++++.+...    ...++.++.+|++|++++.+++++  +|
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  104 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT  104 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence            689999999999999999999999999999998654212222222110    234688999999999999999985  79


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCC---ccEEEeccccccccCCCc------cCCccchhhHh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGA---SRGTLRTQKGKMSSLSSE------MTTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~---~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~  134 (157)
                      +|||+|+...               +.++.++++++.+.+ +   ++||++||.++|+.....      ...+...|..+
T Consensus       105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~s  183 (375)
T 1t2a_A          105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG-LINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA  183 (375)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred             EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCccceEEEecchhhhCCCCCCCCCccCCCCCCChhHHH
Confidence            9999999754               345788999999887 6   799999999998753311      12456789999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |...+.+...+
T Consensus       184 K~~~e~~~~~~  194 (375)
T 1t2a_A          184 KLYAYWIVVNF  194 (375)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988875443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.87  E-value=8.9e-21  Score=144.92  Aligned_cols=128  Identities=23%  Similarity=0.348  Sum_probs=107.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CC-cEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GH-PTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~-~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +|+|+||||||++|++++++|++. |+ +|++++|+     +.+...+. .+...++.++.+|+.|++++.++++++|+|
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~-----~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V   95 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRD-----ELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDIC   95 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESC-----HHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECC-----hhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEE
Confidence            579999999999999999999999 97 99999998     44443332 333467999999999999999999999999


Q ss_pred             EEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHHHHH
Q 040431           81 ISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus        81 v~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      ||+|+...               +.++.++++++.+.+ +++||++||..++.        +...|+.+|...+.+...+
T Consensus        96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~-v~~~V~~SS~~~~~--------p~~~Y~~sK~~~E~~~~~~  166 (344)
T 2gn4_A           96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA-ISQVIALSTDKAAN--------PINLYGATKLCSDKLFVSA  166 (344)
T ss_dssp             EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGGGSS--------CCSHHHHHHHHHHHHHHHG
T ss_pred             EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCCccCC--------CccHHHHHHHHHHHHHHHH
Confidence            99999764               455789999999998 89999999976653        3579999999999885544

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.86  E-value=1.6e-21  Score=143.75  Aligned_cols=130  Identities=10%  Similarity=0.135  Sum_probs=107.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      |++|+||||||+||++++++|++.|++|++++|+....           ...++.++.+|++|++++.++++++|+|||+
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA-----------AEAHEEIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCC-----------CCTTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccc-----------cCCCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            67999999999999999999999999999999985421           0135788999999999999999999999999


Q ss_pred             CCCcc-----------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-------cCCccchhhHhHhhhhHHHHHH
Q 040431           84 VGHTL-----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-------MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus        84 a~~~~-----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      |+...           +.++.++++++.+.+ .++||++||..+|+..+..       ...+...|..+|...+.+...+
T Consensus        71 a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~  149 (267)
T 3ay3_A           71 GGVSVERPWNDILQANIIGAYNLYEAARNLG-KPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLY  149 (267)
T ss_dssp             CSCCSCCCHHHHHHHTHHHHHHHHHHHHHTT-CCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            99743           456789999999887 8899999999988653321       1345678999999988885443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.86  E-value=5.3e-21  Score=145.86  Aligned_cols=137  Identities=27%  Similarity=0.438  Sum_probs=109.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      +|+|+||||||++|+++++.|++.|++|++++|+++.. +++...+..+...++.++.+|+.|++++.++++  ++|+||
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~-~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCC-HHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCC-hhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            46899999999999999999999999999999986432 455555555556789999999999999999999  999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHHH
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      |+++..++.++.++++++.+.+.+++|++ |+.+.... ......+...|..+|...+.+..
T Consensus        89 ~~a~~~n~~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~-e~~~~~p~~~y~~sK~~~e~~l~  148 (346)
T 3i6i_A           89 STVGGESILDQIALVKAMKAVGTIKRFLP-SEFGHDVN-RADPVEPGLNMYREKRRVRQLVE  148 (346)
T ss_dssp             ECCCGGGGGGHHHHHHHHHHHCCCSEEEC-SCCSSCTT-TCCCCTTHHHHHHHHHHHHHHHH
T ss_pred             ECCchhhHHHHHHHHHHHHHcCCceEEee-cccCCCCC-ccCcCCCcchHHHHHHHHHHHHH
Confidence            99999889999999999999874678876 44322111 11113566788899998877744

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.86  E-value=5.1e-21  Score=145.18  Aligned_cols=143  Identities=17%  Similarity=0.202  Sum_probs=102.6

Q ss_pred             CC-CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MA-SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~-~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |+ ++++|+||||+||||++++++|++.|++|++++|+...  ..+...+....  ..++.++.+|++|++++.++++++
T Consensus         1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (337)
T 2c29_D            1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTN--VKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGC   78 (337)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTC--HHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTC
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcch--hHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCC
Confidence            53 35799999999999999999999999999999997432  11222221111  125888999999999999999999


Q ss_pred             CEEEEcCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-c--c-C-------------C
Q 040431           78 DVVISTVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-E--M-T-------------T  126 (157)
Q Consensus        78 d~vv~~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-~--~-~-------------~  126 (157)
                      |+|||+|+...              +.++.++++++.+.+.+++|||+||.+++...+. .  . +             .
T Consensus        79 d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  158 (337)
T 2c29_D           79 TGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKM  158 (337)
T ss_dssp             SEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred             CEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCC
Confidence            99999998642              4557899999988753689999999874322111 0  0 0             1


Q ss_pred             ccchhhHhHhhhhHHHHHH
Q 040431          127 TLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~  145 (157)
                      +...|..+|.+.|.+...+
T Consensus       159 ~~~~Y~~sK~~~E~~~~~~  177 (337)
T 2c29_D          159 TAWMYFVSKTLAEQAAWKY  177 (337)
T ss_dssp             TTHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHH
Confidence            3346999999888875443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.86  E-value=3.8e-21  Score=139.43  Aligned_cols=126  Identities=16%  Similarity=0.314  Sum_probs=104.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCe-EEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGV-NLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .|+|+||||||++|++++++|++.|++|++++|+     +++.+.+.   ..++ .++.+|++  +++.+.+.++|+|||
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~-----~~~~~~~~---~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~   90 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRN-----EEQGPELR---ERGASDIVVANLE--EDFSHAFASIDAVVF   90 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----GGGHHHHH---HTTCSEEEECCTT--SCCGGGGTTCSEEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECC-----hHHHHHHH---hCCCceEEEcccH--HHHHHHHcCCCEEEE
Confidence            6899999999999999999999999999999998     55444332   2468 99999998  778888899999999


Q ss_pred             cCCCcc-----------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           83 TVGHTL-----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        83 ~a~~~~-----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      +||...           +.++.++++++.+.+ .++||++||.+++.....  +.+...|..+|...+.+.
T Consensus        91 ~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~~~~--~~~~~~Y~~sK~~~e~~~  158 (236)
T 3e8x_A           91 AAGSGPHTGADKTILIDLWGAIKTIQEAEKRG-IKRFIMVSSVGTVDPDQG--PMNMRHYLVAKRLADDEL  158 (236)
T ss_dssp             CCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHT-CCEEEEECCTTCSCGGGS--CGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCccccchhhHHHHHHHHHHHHHcC-CCEEEEEecCCCCCCCCC--hhhhhhHHHHHHHHHHHH
Confidence            999863           567899999999998 899999999766543211  146788999999888774

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.86  E-value=4.4e-21  Score=147.91  Aligned_cols=135  Identities=12%  Similarity=0.188  Sum_probs=104.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +|+|+|||||||||++++++|++.| ++|++++|+.... .   +.+.  ...++.++.+|++|++++.++++++|+|||
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~---~~l~--~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih  105 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE-K---INVP--DHPAVRFSETSITDDALLASLQDEYDYVFH  105 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCC-G---GGSC--CCTTEEEECSCTTCHHHHHHCCSCCSEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCc-h---hhcc--CCCceEEEECCCCCHHHHHHHhhCCCEEEE
Confidence            5789999999999999999999999 9999999975432 1   1111  145789999999999999999999999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCC------c-----cC-CccchhhHh
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSS------E-----MT-TTLDMLEMT  134 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~------~-----~~-~~~~~~~~~  134 (157)
                      +|+...               +.++.++++++.+. + +++||++||.++|+....      +     .. .+...|..+
T Consensus       106 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~s  184 (377)
T 2q1s_A          106 LATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKR-LKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMS  184 (377)
T ss_dssp             CCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSS-CCEEEEEEEC--------------CCCCCCCSSCCCSHHHHH
T ss_pred             CCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchHHH
Confidence            999864               34688999999888 7 789999999998864321      1     11 456789999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |...|.+...+
T Consensus       185 K~~~E~~~~~~  195 (377)
T 2q1s_A          185 KIFGEFYSVYY  195 (377)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998885543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.86  E-value=2.7e-21  Score=140.44  Aligned_cols=110  Identities=19%  Similarity=0.297  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ||+|+||||||+||++++++|++.| ++|++++|+...     ..   .....++.++.+|++|++++.++++++|+|||
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~-----~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~   94 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK-----IH---KPYPTNSQIIMGDVLNHAALKQAMQGQDIVYA   94 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGG-----SC---SSCCTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhh-----hc---ccccCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            6789999999999999999999999 899999998432     21   12245789999999999999999999999999


Q ss_pred             cCCCcc-hHHHHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           83 TVGHTL-LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        83 ~a~~~~-~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      +++... ...++++++++++.+ .++||++||.++|...+.
T Consensus        95 ~a~~~~~~~~~~~~~~~~~~~~-~~~iV~iSS~~~~~~~~~  134 (236)
T 3qvo_A           95 NLTGEDLDIQANSVIAAMKACD-VKRLIFVLSLGIYDEVPG  134 (236)
T ss_dssp             ECCSTTHHHHHHHHHHHHHHTT-CCEEEEECCCCC------
T ss_pred             cCCCCchhHHHHHHHHHHHHcC-CCEEEEEecceecCCCCc
Confidence            999865 345778999999998 899999999999876543

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.86  E-value=5e-21  Score=143.54  Aligned_cols=131  Identities=9%  Similarity=0.127  Sum_probs=106.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~   79 (157)
                      +|+|+|||||||||++++++|++.  |++|++++|+....     ..     ..++.++.+|++|++++.++++  ++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-----~~-----~~~~~~~~~D~~d~~~~~~~~~~~~~d~   71 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT-----DV-----VNSGPFEVVNALDFNQIEHLVEVHKITD   71 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC-----HH-----HHSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc-----cc-----cCCCceEEecCCCHHHHHHHHhhcCCCE
Confidence            578999999999999999999999  89999999974331     11     1257789999999999999998  8999


Q ss_pred             EEEcCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC--c-----cCCccchhhHhHhhh
Q 040431           80 VISTVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS--E-----MTTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~--~-----~~~~~~~~~~~~~~~  138 (157)
                      |||+|+...              +.++.++++++.+.+ +++|||+||.++|+..+.  .     ...+...|+.+|...
T Consensus        72 vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~  150 (312)
T 2yy7_A           72 IYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKK-IKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAG  150 (312)
T ss_dssp             EEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTS-CSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHH
T ss_pred             EEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHH
Confidence            999999753              355789999999987 889999999999875332  1     134577899999998


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      +.+...+
T Consensus       151 e~~~~~~  157 (312)
T 2yy7_A          151 ERWCEYY  157 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8875443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.86  E-value=2e-21  Score=138.94  Aligned_cols=125  Identities=16%  Similarity=0.217  Sum_probs=97.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+||||||+||++++++|++.|++|++++|+     +++.+.+.    .++.++.+|++|+++  +.+.++|+|||+|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~-----~~~~~~~~----~~~~~~~~D~~d~~~--~~~~~~d~vi~~a   69 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRN-----AGKITQTH----KDINILQKDIFDLTL--SDLSDQNVVVDAY   69 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----SHHHHHHC----SSSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcC-----chhhhhcc----CCCeEEeccccChhh--hhhcCCCEEEECC
Confidence            489999999999999999999999999999998     55544332    578999999999887  7888999999999


Q ss_pred             CCcc------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-------cCCccchhhHhHhhhhHH
Q 040431           85 GHTL------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-------MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        85 ~~~~------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  141 (157)
                      |...      ...++++++++++.+ .+++|++||.+++...+..       ...+...|..+|...+.+
T Consensus        70 g~~~~~~~~~~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~  138 (221)
T 3ew7_A           70 GISPDEAEKHVTSLDHLISVLNGTV-SPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQL  138 (221)
T ss_dssp             CSSTTTTTSHHHHHHHHHHHHCSCC-SSEEEEECCCC-------------------CCCSCCHHHHHHHH
T ss_pred             cCCccccchHHHHHHHHHHHHHhcC-CceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHHH
Confidence            9863      677899999999987 8999999998776433321       123455677888877665

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.86  E-value=8.8e-21  Score=143.95  Aligned_cols=134  Identities=15%  Similarity=0.180  Sum_probs=107.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      ||+|+|||||||||++++++|++.|++|++++|+....    .+.+...  .++.++.+|++|++++.+++++  +|+||
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~l~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~D~vi   94 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGR----REHLKDH--PNLTFVEGSIADHALVNQLIGDLQPDAVV   94 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC----GGGSCCC--TTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccc----hhhHhhc--CCceEEEEeCCCHHHHHHHHhccCCcEEE
Confidence            68999999999999999999999999999999974322    1111111  4788999999999999999987  99999


Q ss_pred             EcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccc----cCCCcc---CCcc-chhhHhHhhhhHH
Q 040431           82 STVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMS----SLSSEM---TTTL-DMLEMTELIDQKI  141 (157)
Q Consensus        82 ~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~----~~~~~~---~~~~-~~~~~~~~~~~~~  141 (157)
                      |+|+...            +.++.++++++.+.+ +++||++||.++|+    ......   ..+. ..|..+|...+.+
T Consensus        95 h~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~g~~~~~~~~~~~E~~~p~~~~Y~~sK~~~E~~  173 (333)
T 2q1w_A           95 HTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNN-VGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDY  173 (333)
T ss_dssp             ECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGCSCCCSSSBCTTSCCCCTTCHHHHHHHHHHHH
T ss_pred             ECceecCCCccCChHHHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhCCCcccCCCCcCCCCCCCCCchHHHHHHHHHH
Confidence            9999753            356889999999987 88999999999987    322111   0345 7899999999888


Q ss_pred             HHH
Q 040431          142 FIY  144 (157)
Q Consensus       142 ~~~  144 (157)
                      ...
T Consensus       174 ~~~  176 (333)
T 2q1w_A          174 LEY  176 (333)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.86  E-value=7.8e-21  Score=142.83  Aligned_cols=131  Identities=18%  Similarity=0.257  Sum_probs=102.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ||+|+|||||||||++|+++|++.| .++++++.....    .    +.....+.++.+|+.| +++.++++++|+|||+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~----~----~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGN----E----EFVNEAARLVKADLAA-DDIKDYLKGAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCC----G----GGSCTTEEEECCCTTT-SCCHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCC----h----hhcCCCcEEEECcCCh-HHHHHHhcCCCEEEEC
Confidence            4589999999999999999999999 566665543221    1    1124568999999999 8899999999999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHHH
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+...               +.++.++++++.+.+ .++|||+||.++|+.....      ...+...|+.+|...+.+.
T Consensus        71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~  149 (313)
T 3ehe_A           71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALI  149 (313)
T ss_dssp             CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            99642               567889999999998 8899999999999754321      1356788999999998885


Q ss_pred             HHH
Q 040431          143 IYF  145 (157)
Q Consensus       143 ~~~  145 (157)
                      ..+
T Consensus       150 ~~~  152 (313)
T 3ehe_A          150 ESY  152 (313)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.86  E-value=9.6e-21  Score=143.57  Aligned_cols=134  Identities=16%  Similarity=0.237  Sum_probs=107.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      .|+|+|||||||||++++++|++.|++|++++|+.... .   +.+...  .++.++.+|++|++++.++++  ++|+||
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~---~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~D~vi   93 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGK-R---EVLPPV--AGLSVIEGSVTDAGLLERAFDSFKPTHVV   93 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSC-G---GGSCSC--TTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccc-h---hhhhcc--CCceEEEeeCCCHHHHHHHHhhcCCCEEE
Confidence            57999999999999999999999999999999974332 1   111111  468999999999999999998  999999


Q ss_pred             EcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc---c-C--CccchhhHhHhhhhHHHH
Q 040431           82 STVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE---M-T--TTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        82 ~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~  143 (157)
                      |+||...            +.++.++++++.+.+ .++||++||.++|+.....   . +  .+...|..+|...+.+..
T Consensus        94 h~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~E~~~~~~~Y~~sK~~~e~~~~  172 (330)
T 2pzm_A           94 HSAAAYKDPDDWAEDAATNVQGSINVAKAASKAG-VKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLM  172 (330)
T ss_dssp             ECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHHT-CSEEEEEEEGGGGCSCSSSSBCTTCCCCCCSHHHHHHHHHHHHHH
T ss_pred             ECCccCCCccccChhHHHHHHHHHHHHHHHHHcC-CCEEEEecCHHHhCCCccCCCCcCCCCCCCChHHHHHHHHHHHHH
Confidence            9999753            456889999999887 8899999999998754221   1 1  267799999999888744


Q ss_pred             H
Q 040431          144 Y  144 (157)
Q Consensus       144 ~  144 (157)
                      .
T Consensus       173 ~  173 (330)
T 2pzm_A          173 M  173 (330)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.86  E-value=1.8e-20  Score=145.01  Aligned_cols=141  Identities=16%  Similarity=0.273  Sum_probs=108.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHH-hCCCcEEEEecCCCCCCC----chhhHh----hhhcC----CC---eEEEEccCCCh
Q 040431            4 KSKILFIGGTGYIGKFTVEASV-KAGHPTFVLVRESTISGP----SKSQLL----DHFKN----LG---VNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~-~~g~~v~~~~r~~~~~~~----~~~~~~----~~~~~----~~---v~~~~~D~~~~   67 (157)
                      .|+|+|||||||||++++++|+ +.|++|++++|.......    ...+.+    .+...    .+   +.++.+|++|+
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            5699999999999999999999 999999999987533100    001111    12211    24   88999999999


Q ss_pred             HHHHHHhc--C-cCEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-------
Q 040431           68 ESLVKAIK--Q-VDVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-------  122 (157)
Q Consensus        68 ~~~~~~~~--~-~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-------  122 (157)
                      +++.++++  + +|+|||+|+...               +.++.++++++.+.+ +++||++||.++|+....       
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~~~iv~~SS~~v~g~~~~~~~~~~~  160 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CDKIIFSSSAAIFGNPTMGSVSTNA  160 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhC-CCEEEEECCHHHhCCCCcccccccc
Confidence            99999987  6 999999999764               456889999999987 889999999998865431       


Q ss_pred             -cc-----CCccchhhHhHhhhhHHHHHH
Q 040431          123 -EM-----TTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       123 -~~-----~~~~~~~~~~~~~~~~~~~~~  145 (157)
                       ..     ..+...|..+|.+.+.+...+
T Consensus       161 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~  189 (397)
T 1gy8_A          161 EPIDINAKKSPESPYGESKLIAERMIRDC  189 (397)
T ss_dssp             CCBCTTSCCBCSSHHHHHHHHHHHHHHHH
T ss_pred             cCcCccCCCCCCCchHHHHHHHHHHHHHH
Confidence             11     234678999999998885543

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.86  E-value=1.2e-20  Score=142.05  Aligned_cols=130  Identities=11%  Similarity=0.195  Sum_probs=105.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      +++|+|||||||||++++++|++.|++|++++|+.... .        .   ++.++.+|++|++++.+++++  +|+||
T Consensus        12 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~--------l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   79 (321)
T 2pk3_A           12 SMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAK-L--------P---NVEMISLDIMDSQRVKKVISDIKPDYIF   79 (321)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCC-C--------T---TEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             cceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccc-c--------c---eeeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            67999999999999999999999999999999985431 1        1   688999999999999999985  99999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccC--CCc------cCCccchhhHhHhhh
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSL--SSE------MTTTLDMLEMTELID  138 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~--~~~------~~~~~~~~~~~~~~~  138 (157)
                      |+|+...               +.++.++++++.+.++.++||++||..+|+..  ...      ...+...|+.+|...
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~~~  159 (321)
T 2pk3_A           80 HLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASV  159 (321)
T ss_dssp             ECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHHHH
T ss_pred             EcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHHHH
Confidence            9999754               44588999999776227899999999988753  110      134677899999999


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      +.+...+
T Consensus       160 E~~~~~~  166 (321)
T 2pk3_A          160 GMLARQY  166 (321)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8885443

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.86  E-value=1.5e-20  Score=145.65  Aligned_cols=141  Identities=16%  Similarity=0.206  Sum_probs=106.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCC---------------CchhhHhhhhcCCCeEEEEccCCChH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG---------------PSKSQLLDHFKNLGVNLVIGDVLNHE   68 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~---------------~~~~~~~~~~~~~~v~~~~~D~~~~~   68 (157)
                      +++|+|||||||||++++++|++.|++|++++|......               .+....+......++.++.+|++|++
T Consensus        11 ~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~~   90 (404)
T 1i24_A           11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   90 (404)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCHH
Confidence            679999999999999999999999999999987522100               00111111222457899999999999


Q ss_pred             HHHHHhcC--cCEEEEcCCCcc------------------hHHHHHHHHHHHHhcCC-ccEEEeccccccccCCCc----
Q 040431           69 SLVKAIKQ--VDVVISTVGHTL------------------LADQVKIIAAIKEAEGA-SRGTLRTQKGKMSSLSSE----  123 (157)
Q Consensus        69 ~~~~~~~~--~d~vv~~a~~~~------------------~~~~~~l~~~~~~~~~~-~~~v~~Ss~~~~~~~~~~----  123 (157)
                      ++.+++++  +|+|||+||...                  +.++.++++++.+.+ . ++||++||.++|+.....    
T Consensus        91 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~~~V~~SS~~vyg~~~~~~~E~  169 (404)
T 1i24_A           91 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTMGEYGTPNIDIEEG  169 (404)
T ss_dssp             HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGGCCCSSCBCSS
T ss_pred             HHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC-CCcEEEEeCcHHHhCCCCCCCCcc
Confidence            99999987  999999998743                  445788999999887 6 599999999998754311    


Q ss_pred             ---------------cCCccchhhHhHhhhhHHHHHH
Q 040431          124 ---------------MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       124 ---------------~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                                     ...+...|+.+|.+.+.+...+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~  206 (404)
T 1i24_A          170 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFT  206 (404)
T ss_dssp             EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCCCChhHHHHHHHHHHHHHH
Confidence                           1235678999999988874443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.85  E-value=5.1e-21  Score=144.91  Aligned_cols=136  Identities=15%  Similarity=0.122  Sum_probs=106.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh----cCCCeEEE-EccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF----KNLGVNLV-IGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~v~~~-~~D~~~~~~~~~~~~~~d   78 (157)
                      +|+|+||||+||||++++++|++.|++|++++|+     ..+.+.+...    ...++.++ .+|++|++++.++++++|
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS-----ASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC-----cccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCC
Confidence            5789999999999999999999999999999997     4433322211    12568888 899999999999999999


Q ss_pred             EEEEcCCCcc------------hHHHHHHHHHHHH-hcCCccEEEeccccccccCCC-----cc----------------
Q 040431           79 VVISTVGHTL------------LADQVKIIAAIKE-AEGASRGTLRTQKGKMSSLSS-----EM----------------  124 (157)
Q Consensus        79 ~vv~~a~~~~------------~~~~~~l~~~~~~-~~~~~~~v~~Ss~~~~~~~~~-----~~----------------  124 (157)
                      +|||+|+...            +.++.++++++.+ .+ .++||++||.++|+....     ..                
T Consensus        86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  164 (342)
T 1y1p_A           86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPS-VKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTL  164 (342)
T ss_dssp             EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHS
T ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhccc
Confidence            9999999763            5668899999985 45 789999999988743211     00                


Q ss_pred             -----CCccchhhHhHhhhhHHHHHH
Q 040431          125 -----TTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       125 -----~~~~~~~~~~~~~~~~~~~~~  145 (157)
                           ..+...|+.+|...+.+...+
T Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~  190 (342)
T 1y1p_A          165 PESDPQKSLWVYAASKTEAELAAWKF  190 (342)
T ss_dssp             CTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHHHH
Confidence                 124578999999998885444

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.85  E-value=2.8e-20  Score=142.16  Aligned_cols=137  Identities=12%  Similarity=0.175  Sum_probs=107.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhc--CcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIK--QVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~--~~d~v   80 (157)
                      |+|+||||+||||++++++|++. |++|++++|.......+.+   .+.. ..++.++.+|++|++++.++++  ++|+|
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL---SDISESNRYNFEHADICDSAEITRIFEQYQPDAV   77 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG---TTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh---hhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEE
Confidence            47999999999999999999998 7999999987532112222   2221 3478999999999999999998  89999


Q ss_pred             EEcCCCcc---------------hHHHHHHHHHHHHh--cCCc-------cEEEeccccccccCCC-----------c--
Q 040431           81 ISTVGHTL---------------LADQVKIIAAIKEA--EGAS-------RGTLRTQKGKMSSLSS-----------E--  123 (157)
Q Consensus        81 v~~a~~~~---------------~~~~~~l~~~~~~~--~~~~-------~~v~~Ss~~~~~~~~~-----------~--  123 (157)
                      ||+|+...               +.++.++++++.+.  + ++       +||++||.++|+....           .  
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~-v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~  156 (361)
T 1kew_A           78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA-LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT  156 (361)
T ss_dssp             EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHT-SCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC
T ss_pred             EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccC-cccccccCceEEEeCCHHHhCCCcccccccccccCCCCC
Confidence            99999864               45688999999887  6 65       9999999988875421           0  


Q ss_pred             ---cCCccchhhHhHhhhhHHHHHH
Q 040431          124 ---MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                         ...+...|..+|...+.+...+
T Consensus       157 E~~~~~~~~~Y~~sK~~~e~~~~~~  181 (361)
T 1kew_A          157 ETTAYAPSSPYSASKASSDHLVRAW  181 (361)
T ss_dssp             TTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHHHHHH
Confidence               1346778999999998885543

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.85  E-value=1.4e-20  Score=144.36  Aligned_cols=141  Identities=14%  Similarity=0.134  Sum_probs=103.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh---cCCCeEEEEccCCChHHHHHHhcC--cC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF---KNLGVNLVIGDVLNHESLVKAIKQ--VD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~~~~~~~~--~d   78 (157)
                      ||+|+|||||||||++++++|++.|++|++++|+......+.++.+...   ...++.++.+|++|++++.+++++  +|
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999998543211222211110   134688999999999999999885  79


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCC---ccEEEeccccccccCCC------ccCCccchhhHh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGA---SRGTLRTQKGKMSSLSS------EMTTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~---~~~v~~Ss~~~~~~~~~------~~~~~~~~~~~~  134 (157)
                      +|||+|+...               +.++.++++++.+.+ +   ++||++||.++|+....      ....+...|..+
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~Y~~s  159 (372)
T 1db3_A           81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG-LEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA  159 (372)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHH
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCChHHHH
Confidence            9999999743               346888999999887 6   79999999999875431      113457789999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |.+.+.+...+
T Consensus       160 K~~~e~~~~~~  170 (372)
T 1db3_A          160 KLYAYWITVNY  170 (372)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988875443

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.85  E-value=1.5e-20  Score=144.88  Aligned_cols=140  Identities=14%  Similarity=0.104  Sum_probs=106.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh---cCC-CeEEEEccCCChHHHHHHhcC--cC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF---KNL-GVNLVIGDVLNHESLVKAIKQ--VD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~-~v~~~~~D~~~~~~~~~~~~~--~d   78 (157)
                      ++|+|||||||||+++++.|++.|++|++++|+........++.+...   ... ++.++.+|++|++++.+++++  +|
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  108 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD  108 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence            689999999999999999999999999999998654211122211110   012 688999999999999999985  69


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCc-----cEEEeccccccccCCCc-----cCCccchhhH
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGAS-----RGTLRTQKGKMSSLSSE-----MTTTLDMLEM  133 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~-----~~v~~Ss~~~~~~~~~~-----~~~~~~~~~~  133 (157)
                      +|||+|+...               +.++.++++++.+.+ ++     +|||+||.++|+.....     ...+...|+.
T Consensus       109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~~~~~~Y~~  187 (381)
T 1n7h_A          109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT-IDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAA  187 (381)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHH-HHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHHH
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CccCCccEEEEeCcHHHhCCCCCCCCCCCCCCCCCchHH
Confidence            9999999754               345788999998876 54     99999999998754221     1345778999


Q ss_pred             hHhhhhHHHHHH
Q 040431          134 TELIDQKIFIYF  145 (157)
Q Consensus       134 ~~~~~~~~~~~~  145 (157)
                      +|...+.+...+
T Consensus       188 sK~~~E~~~~~~  199 (381)
T 1n7h_A          188 SKCAAHWYTVNY  199 (381)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988875443

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.85  E-value=7.6e-21  Score=138.01  Aligned_cols=123  Identities=15%  Similarity=0.127  Sum_probs=102.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +|+++||||+|+||++++++|++.|+  +|++++|++......        ...++.++.+|++|++++.++++++|+||
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   89 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--------AYKNVNQEVVDFEKLDDYASAFQGHDVGF   89 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--------GGGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc--------ccCCceEEecCcCCHHHHHHHhcCCCEEE
Confidence            47899999999999999999999999  999999986543111        12357889999999999999999999999


Q ss_pred             EcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           82 STVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+||...            ..++.++++++.+.+ .++||++||.+++..       +...|..+|...+.+.
T Consensus        90 ~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~~-------~~~~Y~~sK~~~e~~~  154 (242)
T 2bka_A           90 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADKS-------SNFLYLQVKGEVEAKV  154 (242)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCTT-------CSSHHHHHHHHHHHHH
T ss_pred             ECCCcccccCCcccceeeeHHHHHHHHHHHHHCC-CCEEEEEccCcCCCC-------CcchHHHHHHHHHHHH
Confidence            9999863            456788999999887 789999999988862       3457889998887773

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.85  E-value=4.8e-21  Score=137.48  Aligned_cols=125  Identities=15%  Similarity=0.235  Sum_probs=101.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+||||||+||++++++|++.|++|++++|+     +++...   ....++.++.+|++|+++  +.+.++|+|||+|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~-----~~~~~~---~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~a   70 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRD-----PQKAAD---RLGATVATLVKEPLVLTE--ADLDSVDAVVDAL   70 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHH---HTCTTSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec-----cccccc---ccCCCceEEecccccccH--hhcccCCEEEECC
Confidence            479999999999999999999999999999998     544432   234679999999999888  7888999999999


Q ss_pred             CCc--------chHHHHHHHHHHHHhcCCccEEEeccccccccCCCc---------cCCccchhhHhHhhhhHH
Q 040431           85 GHT--------LLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE---------MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        85 ~~~--------~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  141 (157)
                      |..        ...+++++++++++.+  ++||++||.+++...+..         .+.+...|..+|...+.+
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  142 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSD--TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEY  142 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCC--CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHHHHHH
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcC--CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHHHHHH
Confidence            985        3777899999999886  799999998765433221         133467899999888744

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.85  E-value=2.1e-20  Score=135.95  Aligned_cols=130  Identities=15%  Similarity=0.141  Sum_probs=101.5

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      ++|+|+||||+|++|++++++|++.  |++|++++|+     +.+.+.+    ..++.++.+|++|++++.++++++|+|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~-----~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~d~v   73 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS-----AQGKEKI----GGEADVFIGDITDADSINPAFQGIDAL   73 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC-----HHHHHHT----TCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC-----CCchhhc----CCCeeEEEecCCCHHHHHHHHcCCCEE
Confidence            3789999999999999999999999  8999999998     4443322    346889999999999999999999999


Q ss_pred             EEcCCCcc----------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           81 ISTVGHTL----------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        81 v~~a~~~~----------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ||+|+...                            +.++.++++++.+.+ .++||++||.+++...+.........|.
T Consensus        74 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~~~~~~~~~~~~~~y~  152 (253)
T 1xq6_A           74 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VKHIVVVGSMGGTNPDHPLNKLGNGNIL  152 (253)
T ss_dssp             EECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CSEEEEEEETTTTCTTCGGGGGGGCCHH
T ss_pred             EEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC-CCEEEEEcCccCCCCCCccccccchhHH
Confidence            99998641                            346889999999988 8899999998876432211111113455


Q ss_pred             HhHhhhhHHH
Q 040431          133 MTELIDQKIF  142 (157)
Q Consensus       133 ~~~~~~~~~~  142 (157)
                      .+|...+.+.
T Consensus       153 ~sK~~~e~~~  162 (253)
T 1xq6_A          153 VWKRKAEQYL  162 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6788777663

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.85  E-value=1.4e-20  Score=140.69  Aligned_cols=133  Identities=13%  Similarity=0.068  Sum_probs=103.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |+++|+|+||||||++|++++++|++.| ++|++++|++..   ...+.+   ...+++++.+|+.|++++.++++++|+
T Consensus         2 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~---~~~~~l---~~~~~~~~~~D~~d~~~l~~~~~~~d~   75 (299)
T 2wm3_A            2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRK---KAAKEL---RLQGAEVVQGDQDDQVIMELALNGAYA   75 (299)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTS---HHHHHH---HHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCC---HHHHHH---HHCCCEEEEecCCCHHHHHHHHhcCCE
Confidence            5546899999999999999999999998 999999998432   111112   234689999999999999999999999


Q ss_pred             EEEcCCCcc-------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHHH
Q 040431           80 VISTVGHTL-------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        80 vv~~a~~~~-------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      |||+++...       ...++++++++.+.+ +++||++|+.+++.....   .+...|..+|...+.+..
T Consensus        76 vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~g-v~~iv~~S~~~~~~~~~~---~~~~~y~~sK~~~e~~~~  142 (299)
T 2wm3_A           76 TFIVTNYWESCSQEQEVKQGKLLADLARRLG-LHYVVYSGLENIKKLTAG---RLAAAHFDGKGEVEEYFR  142 (299)
T ss_dssp             EEECCCHHHHTCHHHHHHHHHHHHHHHHHHT-CSEEEECCCCCHHHHTTT---SCCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCccccchHHHHHHHHHHHHHHHcC-CCEEEEEcCccccccCCC---cccCchhhHHHHHHHHHH
Confidence            999998632       456889999999998 899999888777653221   234567788888777743

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.85  E-value=2.6e-20  Score=141.41  Aligned_cols=134  Identities=16%  Similarity=0.138  Sum_probs=106.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-------CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-------HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-------~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      +|+|+||||+||||++++++|++.|       ++|++++|+......        ....++.++.+|++|++++.++++ 
T Consensus        14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~~~   85 (342)
T 2hrz_A           14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--------GFSGAVDARAADLSAPGEAEKLVEA   85 (342)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--------TCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--------ccCCceeEEEcCCCCHHHHHHHHhc
Confidence            5799999999999999999999999       899999998543211        123468899999999999999995 


Q ss_pred             CcCEEEEcCCCcc--------------hHHHHHHHHHHHHhc----CCccEEEeccccccccCCC-cc-----CCccchh
Q 040431           76 QVDVVISTVGHTL--------------LADQVKIIAAIKEAE----GASRGTLRTQKGKMSSLSS-EM-----TTTLDML  131 (157)
Q Consensus        76 ~~d~vv~~a~~~~--------------~~~~~~l~~~~~~~~----~~~~~v~~Ss~~~~~~~~~-~~-----~~~~~~~  131 (157)
                      ++|+|||+|+...              +.++.++++++.+.+    .+++||++||.++|+.... ..     ..+...|
T Consensus        86 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y  165 (342)
T 2hrz_A           86 RPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSY  165 (342)
T ss_dssp             CCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCCCSSHH
T ss_pred             CCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCCCcchH
Confidence            8999999999753              455788999988764    2589999999999875421 11     2367789


Q ss_pred             hHhHhhhhHHHHHH
Q 040431          132 EMTELIDQKIFIYF  145 (157)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (157)
                      ..+|.+.+.+...+
T Consensus       166 ~~sK~~~e~~~~~~  179 (342)
T 2hrz_A          166 GTQKAICELLLSDY  179 (342)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998885544

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.85  E-value=2.4e-20  Score=138.48  Aligned_cols=127  Identities=10%  Similarity=0.066  Sum_probs=103.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ||+|+|||| ||+|++++++|++.|++|++++|+     +.+...+.   ..+++++.+|+.|.+     +.++|+|||+
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~-----~~~~~~~~---~~~~~~~~~D~~d~~-----~~~~d~vi~~   70 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRN-----PDQMEAIR---ASGAEPLLWPGEEPS-----LDGVTHLLIS   70 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESC-----GGGHHHHH---HTTEEEEESSSSCCC-----CTTCCEEEEC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcC-----hhhhhhHh---hCCCeEEEecccccc-----cCCCCEEEEC
Confidence            689999998 999999999999999999999998     44443332   357999999999855     7899999999


Q ss_pred             CCCcc--hHHHHHHHHHHHH--hcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHHHHHH
Q 040431           84 VGHTL--LADQVKIIAAIKE--AEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus        84 a~~~~--~~~~~~l~~~~~~--~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      |+...  ...+.++++++.+  .+ +++|||+||.++|+.....      ...+...|+.+|...|.+...+
T Consensus        71 a~~~~~~~~~~~~l~~a~~~~~~~-~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  141 (286)
T 3ius_A           71 TAPDSGGDPVLAALGDQIAARAAQ-FRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAV  141 (286)
T ss_dssp             CCCBTTBCHHHHHHHHHHHHTGGG-CSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHS
T ss_pred             CCccccccHHHHHHHHHHHhhcCC-ceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence            99875  3456889999998  56 7899999999999765331      1456678999999998885554

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.85  E-value=3.6e-20  Score=138.69  Aligned_cols=137  Identities=42%  Similarity=0.626  Sum_probs=102.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC-CCCCC-chhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES-TISGP-SKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~-~~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      ||+|+||||||++|++++++|++.|++|++++|++ ....+ ++.+.++.+...+++++.+|+.|++++.++++++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            67899999999999999999999999999999985 22112 44444444444579999999999999999999999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+++......+.++++++.+.+.+++||+ |+.+...+...........| .+|...+.+.
T Consensus        82 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~p~~~~y-~sK~~~e~~~  140 (307)
T 2gas_A           82 CAAGRLLIEDQVKIIKAIKEAGNVKKFFP-SEFGLDVDRHDAVEPVRQVF-EEKASIRRVI  140 (307)
T ss_dssp             ECSSSSCGGGHHHHHHHHHHHCCCSEEEC-SCCSSCTTSCCCCTTHHHHH-HHHHHHHHHH
T ss_pred             ECCcccccccHHHHHHHHHhcCCceEEee-cccccCcccccCCCcchhHH-HHHHHHHHHH
Confidence            99998878889999999998863688874 43221111101111224567 7787776663

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.85  E-value=1.8e-20  Score=139.11  Aligned_cols=121  Identities=22%  Similarity=0.281  Sum_probs=101.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      |+|+|||||||+|++++++|++.  |++|++++|++.     +...+.   ..++.++.+|++|++++.++++++|+|||
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~-----~~~~l~---~~~~~~~~~D~~d~~~l~~~~~~~d~vi~   72 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE-----KASTLA---DQGVEVRHGDYNQPESLQKAFAGVSKLLF   72 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTT-----TTHHHH---HTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHH-----HHhHHh---hcCCeEEEeccCCHHHHHHHHhcCCEEEE
Confidence            47999999999999999999999  999999999843     222221   24688999999999999999999999999


Q ss_pred             cCCCc-----chHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           83 TVGHT-----LLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        83 ~a~~~-----~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      +|+..     ++.++.++++++.+.+ +++||++||.+++..        ...|..+|...|.+.
T Consensus        73 ~a~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~~--------~~~y~~~K~~~E~~~  128 (287)
T 2jl1_A           73 ISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAFAEES--------IIPLAHVHLATEYAI  128 (287)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHTT-CSEEEEEEETTGGGC--------CSTHHHHHHHHHHHH
T ss_pred             cCCCCcCchHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCCC--------CCchHHHHHHHHHHH
Confidence            99974     3667899999999988 899999999887631        136888888887774

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.84  E-value=1.9e-20  Score=142.01  Aligned_cols=140  Identities=17%  Similarity=0.191  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +|+|+|||||||||++|+++|++.|++|+++.|+....  .+...+... ...++.++.+|++|++++.++++++|+|||
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih   86 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQ--KKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFH   86 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCT--TTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchh--hhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEE
Confidence            46899999999999999999999999999999975432  111111111 124688999999999999999999999999


Q ss_pred             cCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccc-ccc--C------CCccC------Cc----cc
Q 040431           83 TVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGK-MSS--L------SSEMT------TT----LD  129 (157)
Q Consensus        83 ~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~-~~~--~------~~~~~------~~----~~  129 (157)
                      +|+...              +.++.++++++.+.+.+++|||+||.++ ++.  .      +....      .+    ..
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  166 (338)
T 2rh8_A           87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTW  166 (338)
T ss_dssp             ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCC
T ss_pred             eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccc
Confidence            998642              4568899999988743789999999873 211  0      00000      01    11


Q ss_pred             hhhHhHhhhhHHHHHH
Q 040431          130 MLEMTELIDQKIFIYF  145 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~~  145 (157)
                      .|..+|.+.|.+...+
T Consensus       167 ~Y~~sK~~~E~~~~~~  182 (338)
T 2rh8_A          167 GYPASKTLAEKAAWKF  182 (338)
T ss_dssp             CCTTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            5999999888775443

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.84  E-value=4.5e-20  Score=138.57  Aligned_cols=131  Identities=15%  Similarity=0.191  Sum_probs=103.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+|+||||+||||++++++|++.|++|++++|.....    .+.+    ..++.++.+|++|++++.++++  ++|+|||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   72 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGK----RENV----PKGVPFFRVDLRDKEGVERAFREFRPTHVSH   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCC----GGGS----CTTCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCc----hhhc----ccCeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            4899999999999999999999999999998853221    1111    2467889999999999999998  7999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccc-ccccc-CCC-c-----cCCccchhhHhHhhhh
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQK-GKMSS-LSS-E-----MTTTLDMLEMTELIDQ  139 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~-~~~~~-~~~-~-----~~~~~~~~~~~~~~~~  139 (157)
                      +|+...               +.++.++++++.+.+ .++||++||. .+|+. ... .     ...+...|+.+|.+.+
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  151 (311)
T 2p5y_A           73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-VEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFE  151 (311)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHHHHH
T ss_pred             CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHHHHH
Confidence            999753               345788999999887 8899999998 77764 110 1     1235678999999988


Q ss_pred             HHHHH
Q 040431          140 KIFIY  144 (157)
Q Consensus       140 ~~~~~  144 (157)
                      .+...
T Consensus       152 ~~~~~  156 (311)
T 2p5y_A          152 HYLSV  156 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88544

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.84  E-value=8e-20  Score=135.72  Aligned_cols=132  Identities=18%  Similarity=0.166  Sum_probs=104.7

Q ss_pred             CC-CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            1 MA-SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         1 M~-~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      |+ ++++++||||+|+||++++++|++.|++|++++|+     .++.+.+......++.++.+|++|++++.++++    
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARR-----TEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLA   75 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS-----GGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            53 35789999999999999999999999999999998     555544443335679999999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+||||||...                   +.+    ++.+++.+++.+ .++||++||..++...     .+..
T Consensus        76 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~  149 (281)
T 3m1a_A           76 RYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQLSF-----AGFS  149 (281)
T ss_dssp             HHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCCC-----TTCH
T ss_pred             hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCccccCCC-----CCch
Confidence               6899999999753                   222    677777788877 7899999998776532     3467


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       150 ~Y~~sK~a~~~~~~  163 (281)
T 3m1a_A          150 AYSATKAALEQLSE  163 (281)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999998877743

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.84  E-value=3.9e-20  Score=139.48  Aligned_cols=135  Identities=36%  Similarity=0.568  Sum_probs=101.5

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC-CCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES-TISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +||+|+||||||++|++++++|++.|++|++++|+. +...+++.+.+..+...++.++.+|++|++++.++++++|+||
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi   82 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI   82 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence            367899999999999999999999999999999985 3221234444443444679999999999999999999999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc--CCc-cchhhHhHhhhhHHH
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM--TTT-LDMLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~  142 (157)
                      |+++......++++++++.+.+.+++||+ |+   |+....+.  ..+ ...| .+|...+.+.
T Consensus        83 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~~~~~~~p~~~~y-~sK~~~e~~~  141 (321)
T 3c1o_A           83 SALPFPMISSQIHIINAIKAAGNIKRFLP-SD---FGCEEDRIKPLPPFESVL-EKKRIIRRAI  141 (321)
T ss_dssp             ECCCGGGSGGGHHHHHHHHHHCCCCEEEC-SC---CSSCGGGCCCCHHHHHHH-HHHHHHHHHH
T ss_pred             ECCCccchhhHHHHHHHHHHhCCccEEec-cc---cccCccccccCCCcchHH-HHHHHHHHHH
Confidence            99998777789999999999853678873 43   32111111  112 3467 7777776663

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.84  E-value=1.1e-19  Score=150.14  Aligned_cols=140  Identities=18%  Similarity=0.220  Sum_probs=110.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      +|+|+||||+||||++++++|++.|++|++++|..... ....+.+......++.++.+|++|++++.++++  ++|+||
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vi   89 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNST-YDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   89 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-THHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcch-HHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEE
Confidence            47899999999999999999999999999999875432 222223333334578999999999999999998  899999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-----c-----cCCccchhhHhHh
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-----E-----MTTTLDMLEMTEL  136 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-----~-----~~~~~~~~~~~~~  136 (157)
                      |+|+...               +.++.++++++.+.+ +++||++||.++|+....     .     ...+...|..+|.
T Consensus        90 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK~  168 (699)
T 1z45_A           90 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKY  168 (699)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHH
T ss_pred             ECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECcHHHhCCCccccccCCccccCCCCCCChHHHHHH
Confidence            9999764               355788999999987 899999999998864311     0     1235678999999


Q ss_pred             hhhHHHHHH
Q 040431          137 IDQKIFIYF  145 (157)
Q Consensus       137 ~~~~~~~~~  145 (157)
                      +.+.+...+
T Consensus       169 ~~E~~~~~~  177 (699)
T 1z45_A          169 AIENILNDL  177 (699)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998885544

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.84  E-value=4.4e-20  Score=139.11  Aligned_cols=129  Identities=39%  Similarity=0.602  Sum_probs=97.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      ++|+||||||++|++++++|++.|++|++++|++.    .+.+.+.++...+++++.+|+.|++++.++++++|+|||++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~----~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC----SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC----chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            48999999999999999999999999999999853    12222333334578999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc--CCc-cchhhHhHhhhhHHH
Q 040431           85 GHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM--TTT-LDMLEMTELIDQKIF  142 (157)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~  142 (157)
                      +......++++++++.+.+.+++||+ |+   |+....+.  ..+ ...| .+|...+.+.
T Consensus        88 ~~~~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~~~~~~~p~~~~y-~sK~~~e~~~  143 (318)
T 2r6j_A           88 AFPQILDQFKILEAIKVAGNIKRFLP-SD---FGVEEDRINALPPFEALI-ERKRMIRRAI  143 (318)
T ss_dssp             CGGGSTTHHHHHHHHHHHCCCCEEEC-SC---CSSCTTTCCCCHHHHHHH-HHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHhcCCCCEEEe-ec---cccCcccccCCCCcchhH-HHHHHHHHHH
Confidence            98777789999999999863678875 44   32111111  111 3456 6777666663

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.84  E-value=1.5e-19  Score=137.13  Aligned_cols=132  Identities=17%  Similarity=0.235  Sum_probs=102.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh-HHHHHHhcCcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH-ESLVKAIKQVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~~~~~~d~vv~   82 (157)
                      |+|+|||||||||++++++|++. |++|++++|+.     .+.+.+.  ...++.++.+|++|. +.+.++++++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-----~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS-----DAISRFL--NHPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC-----GGGGGGT--TCTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCc-----chHHHhh--cCCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            48999999999999999999998 89999999983     3222111  235789999999984 668888899999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------------CCccchhhHh
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------------TTTLDMLEMT  134 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------------~~~~~~~~~~  134 (157)
                      +|+...               +.++.++++++.+.+  ++|||+||.++|+..+...             ..+...|+.+
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~s  151 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVS  151 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHH
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHH
Confidence            999754               335788999998876  7999999999987543211             1234489999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |...+.+...+
T Consensus       152 K~~~e~~~~~~  162 (345)
T 2bll_A          152 KQLLDRVIWAY  162 (345)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988885443

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.84  E-value=8.9e-20  Score=137.07  Aligned_cols=126  Identities=17%  Similarity=0.265  Sum_probs=103.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      +|+|||||||||++++++|++.  |++|++++|+....             .++.++.+|++|++++.++++  ++|+||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-------------~~~~~~~~D~~d~~~~~~~~~~~~~d~vi   67 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT-------------GGIKFITLDVSNRDEIDRAVEKYSIDAIF   67 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC-------------TTCCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc-------------cCceEEEecCCCHHHHHHHHhhcCCcEEE
Confidence            5899999999999999999998  89999999874321             146789999999999999998  899999


Q ss_pred             EcCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC--cc-----CCccchhhHhHhhhhH
Q 040431           82 STVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS--EM-----TTTLDMLEMTELIDQK  140 (157)
Q Consensus        82 ~~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~  140 (157)
                      |+|+...              +.++.++++++.+.+ +++||++||.++|+....  ..     ..+...|+.+|...+.
T Consensus        68 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~  146 (317)
T 3ajr_A           68 HLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAEL  146 (317)
T ss_dssp             ECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHH
T ss_pred             ECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcC-CCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHH
Confidence            9999753              345789999999987 889999999999875321  11     2467899999999988


Q ss_pred             HHHHH
Q 040431          141 IFIYF  145 (157)
Q Consensus       141 ~~~~~  145 (157)
                      +...+
T Consensus       147 ~~~~~  151 (317)
T 3ajr_A          147 LGQYY  151 (317)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            75443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.83  E-value=6.2e-20  Score=136.50  Aligned_cols=103  Identities=19%  Similarity=0.194  Sum_probs=89.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      |+|+||||||++|+++++.|.+. |++|++++|++.     +..   .+...+++++.+|++|++++.++++++|+|||+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~-----~~~---~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVE-----KVP---DDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGG-----GSC---GGGBTTBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHH-----HHH---HhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            47999999999999999999998 899999999843     322   223467999999999999999999999999999


Q ss_pred             CCCcc-----hHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           84 VGHTL-----LADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        84 a~~~~-----~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      ++...     ...++++++++.+.+ +++||++||.+.
T Consensus        73 a~~~~~~~~~~~~~~~l~~aa~~~g-v~~iv~~Ss~~~  109 (289)
T 3e48_A           73 PSIIHPSFKRIPEVENLVYAAKQSG-VAHIIFIGYYAD  109 (289)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHTT-CCEEEEEEESCC
T ss_pred             CCCCccchhhHHHHHHHHHHHHHcC-CCEEEEEcccCC
Confidence            99854     567899999999998 899999999654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.83  E-value=7.3e-20  Score=145.42  Aligned_cols=139  Identities=14%  Similarity=0.201  Sum_probs=107.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC---CCcEEEEecCCCCCCCchhhHh---------------hhhcCCCeEEEEccCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA---GHPTFVLVRESTISGPSKSQLL---------------DHFKNLGVNLVIGDVL   65 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~---g~~v~~~~r~~~~~~~~~~~~~---------------~~~~~~~v~~~~~D~~   65 (157)
                      +|+|+|||||||||++++++|++.   |++|++++|+....  ...+.+               ......++.++.+|++
T Consensus        73 ~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~  150 (478)
T 4dqv_A           73 LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE--DARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS  150 (478)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH--HHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH--HHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence            689999999999999999999999   89999999984321  111111               1112358999999998


Q ss_pred             ------ChHHHHHHhcCcCEEEEcCCCcc-----------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-C--
Q 040431           66 ------NHESLVKAIKQVDVVISTVGHTL-----------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-T--  125 (157)
Q Consensus        66 ------~~~~~~~~~~~~d~vv~~a~~~~-----------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~--  125 (157)
                            |.+.+.++++++|+|||+|+...           +.++.++++++.+.+ +++|||+||.++|+...... .  
T Consensus       151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~~V~iSS~~v~~~~~~~~~~E~  229 (478)
T 4dqv_A          151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIEPSAFTED  229 (478)
T ss_dssp             SGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSS-CCCEEEEEEGGGGTTSCTTTCCSS
T ss_pred             CcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeehhhcCccCCCCcCCc
Confidence                  66789999999999999999853           667999999999987 88999999999887533221 1  


Q ss_pred             ---Cc-----------cchhhHhHhhhhHHHHHH
Q 040431          126 ---TT-----------LDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       126 ---~~-----------~~~~~~~~~~~~~~~~~~  145 (157)
                         .+           ...|+.+|...|.+...+
T Consensus       230 ~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~  263 (478)
T 4dqv_A          230 ADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREA  263 (478)
T ss_dssp             SCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccccchHHHHHHHHHHHHHH
Confidence               11           134999999998886554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.83  E-value=4.6e-20  Score=136.97  Aligned_cols=115  Identities=10%  Similarity=0.152  Sum_probs=97.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |+|+|||||||||++++++|++.|++|++++|.                       .+|+.|++++.++++  ++|+|||
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~~~d~vi~   62 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEIRPHIIIH   62 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhcCCCEEEE
Confidence            489999999999999999999999999999984                       278999999999998  6999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  141 (157)
                      +|+...               +.++.++++++.+.+ . +|||+||..+|+.....      ...+...|+.+|...|.+
T Consensus        63 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~  140 (287)
T 3sc6_A           63 CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG-A-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQF  140 (287)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             CCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            999865               345789999999998 5 79999999998654321      145678999999999888


Q ss_pred             HHH
Q 040431          142 FIY  144 (157)
Q Consensus       142 ~~~  144 (157)
                      ...
T Consensus       141 ~~~  143 (287)
T 3sc6_A          141 VKE  143 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.83  E-value=7.3e-20  Score=135.63  Aligned_cols=121  Identities=19%  Similarity=0.235  Sum_probs=97.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            6 KILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|+||||||++|++++++|++.  |++|++++|++..     ...+   ...++.++.+|++|++++.++++++|+|||+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK-----AQAL---AAQGITVRQADYGDEAALTSALQGVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----CHHH---HHTTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh-----hhhh---hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            5899999999999999999998  9999999998432     2222   1246889999999999999999999999999


Q ss_pred             CCCc---chHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHHH
Q 040431           84 VGHT---LLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        84 a~~~---~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      |+..   .+.++.++++++.+.+ +++||++||.+++..        ...|..+|...|.+..
T Consensus        73 a~~~~~~~~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~~--------~~~y~~sK~~~e~~~~  126 (286)
T 2zcu_A           73 SSSEVGQRAPQHRNVINAAKAAG-VKFIAYTSLLHADTS--------PLGLADEHIETEKMLA  126 (286)
T ss_dssp             C--------CHHHHHHHHHHHHT-CCEEEEEEETTTTTC--------CSTTHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCCC--------cchhHHHHHHHHHHHH
Confidence            9963   2567899999999998 899999999888721        2368888888877743

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.83  E-value=5.4e-20  Score=138.43  Aligned_cols=139  Identities=15%  Similarity=0.279  Sum_probs=99.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEec-CCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVR-ESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++|+|||||||||++++++|++.|++|++++| ++...  .+...+....  ..++.++.+|++|++++.++++++|+|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   78 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERK--RDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGI   78 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC------CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccch--hHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEE
Confidence            368999999999999999999999999999998 53221  1111111111  125788899999999999999999999


Q ss_pred             EEcCCCcc--------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCc---c-C------------Cccc
Q 040431           81 ISTVGHTL--------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSE---M-T------------TTLD  129 (157)
Q Consensus        81 v~~a~~~~--------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~---~-~------------~~~~  129 (157)
                      ||+|+...              +.++.++++++.+. + +++||++||..++...+..   . +            .+..
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~  157 (322)
T 2p4h_X           79 FHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT-VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG  157 (322)
T ss_dssp             EECCCCC--------CHHHHHHHHHHHHHHHHHTTCSS-CCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred             EEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCC-ccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence            99997531              45688899998887 5 7899999998754221110   0 0            0111


Q ss_pred             -hhhHhHhhhhHHHHHH
Q 040431          130 -MLEMTELIDQKIFIYF  145 (157)
Q Consensus       130 -~~~~~~~~~~~~~~~~  145 (157)
                       .|..+|.+.+.+..++
T Consensus       158 ~~Y~~sK~~~e~~~~~~  174 (322)
T 2p4h_X          158 WNYAVSKTLAEKAVLEF  174 (322)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence             6999999888875443

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.83  E-value=5.2e-20  Score=138.34  Aligned_cols=123  Identities=11%  Similarity=0.104  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      +|+|+|||||||||++++++|++.|++|++++|+...              .+  ++.+|++|++++.+++++  +|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--------------~~--~~~~Dl~d~~~~~~~~~~~~~d~vi   65 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR--------------PK--FEQVNLLDSNAVHHIIHDFQPHVIV   65 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHHCCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC--------------CC--eEEecCCCHHHHHHHHHhhCCCEEE
Confidence            6799999999999999999999999999999987321              12  678999999999999874  89999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-----CCccchhhHhHhhhhHH
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-----TTTLDMLEMTELIDQKI  141 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  141 (157)
                      |+|+...               +.++.++++++.+.+ . +|||+||..+|+......     ..+...|..+|...+.+
T Consensus        66 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~  143 (315)
T 2ydy_A           66 HCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG-A-FLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKA  143 (315)
T ss_dssp             ECC-------------------CHHHHHHHHHHHHHT-C-EEEEEEEGGGSCSSSCSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             ECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEchHHHcCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            9999753               456889999999987 5 999999999987521111     35577899999999888


Q ss_pred             HHH
Q 040431          142 FIY  144 (157)
Q Consensus       142 ~~~  144 (157)
                      ...
T Consensus       144 ~~~  146 (315)
T 2ydy_A          144 VLE  146 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.82  E-value=1.7e-19  Score=135.75  Aligned_cols=121  Identities=14%  Similarity=0.202  Sum_probs=98.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVD   78 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d   78 (157)
                      |+ +|+|+|||||||||++++++|++.|++|+++.|+.                      .+|+.|++++.++++  ++|
T Consensus         1 M~-~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~~~d   57 (321)
T 1e6u_A            1 MA-KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERID   57 (321)
T ss_dssp             -C-CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCS
T ss_pred             CC-CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhcCCC
Confidence            54 67999999999999999999999999999887651                      269999999999998  899


Q ss_pred             EEEEcCCCcc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc----------cCCc-cchh
Q 040431           79 VVISTVGHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE----------MTTT-LDML  131 (157)
Q Consensus        79 ~vv~~a~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~----------~~~~-~~~~  131 (157)
                      +|||+|+...                +.++.++++++.+.+ +++|||+||.++|+.....          ...+ ...|
T Consensus        58 ~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y  136 (321)
T 1e6u_A           58 QVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY  136 (321)
T ss_dssp             EEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHH
T ss_pred             EEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCcc
Confidence            9999999763                456889999999988 8899999999998753211          1122 2589


Q ss_pred             hHhHhhhhHHHHHH
Q 040431          132 EMTELIDQKIFIYF  145 (157)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (157)
                      ..+|...|.+...+
T Consensus       137 ~~sK~~~E~~~~~~  150 (321)
T 1e6u_A          137 AIAKIAGIKLCESY  150 (321)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988885543

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.82  E-value=5.4e-20  Score=138.17  Aligned_cols=130  Identities=15%  Similarity=0.123  Sum_probs=98.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +|+|+|||||||+|++++++|++.|++|++++|+.... ....+.+.. ....++.++.+|+.          ++|+|||
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~----------~~d~vi~   75 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPP-MIPPEGTGKFLEKPVLELEERDLS----------DVRLVYH   75 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCC-SSCCTTSSEEECSCGGGCCHHHHT----------TEEEEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccc-ccchhhhhhhccCCCeeEEeCccc----------cCCEEEE
Confidence            67999999999999999999999999999999986521 011111111 11234566666665          7999999


Q ss_pred             cCCCcc--------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHHH
Q 040431           83 TVGHTL--------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        83 ~a~~~~--------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  142 (157)
                      +|+...              +.++.++++++.+.+ +++|||+||.++|+..+..      ...+...|+.+|...|.+.
T Consensus        76 ~a~~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~  154 (321)
T 3vps_A           76 LASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSVG-VPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVA  154 (321)
T ss_dssp             CCCCCCHHHHTTSTTTTHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCccCChHHHHhCHHHHHHHHHHHHHHHHHHHHcC-CCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Confidence            999764              456789999999998 8999999999998764321      1356788999999998885


Q ss_pred             HHH
Q 040431          143 IYF  145 (157)
Q Consensus       143 ~~~  145 (157)
                      ..+
T Consensus       155 ~~~  157 (321)
T 3vps_A          155 GAH  157 (321)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.82  E-value=5.8e-19  Score=130.04  Aligned_cols=128  Identities=14%  Similarity=0.072  Sum_probs=99.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     +++.+.+.......+.++.+|++|++++.++++       +
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   81 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL-----DEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGG   81 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999998     444443322222358889999999999998887       7


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                       ...++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  155 (260)
T 1nff_A           82 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLAGT-----VACHGYTA  155 (260)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEeehhhcCCC-----CCchhHHH
Confidence            999999999753                       112356777777776 7899999998876543     23568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       156 sK~a~~~~~  164 (260)
T 1nff_A          156 TKFAVRGLT  164 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998877663

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.82  E-value=1.5e-19  Score=134.44  Aligned_cols=116  Identities=17%  Similarity=0.113  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      .++|+|||||||||++++++|++.|++|++++|+                       .+|++|++++.++++  ++|+||
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~~~d~vi   68 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEKKPNVVI   68 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhcCCCEEE
Confidence            5799999999999999999999999999999886                       269999999999998  799999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-c-----CCccchhhHhHhhhhH
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-M-----TTTLDMLEMTELIDQK  140 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~  140 (157)
                      |+|+...               +.++.++++++.+.+ . +|||+||.++|+..... .     ..+...|+.+|...|.
T Consensus        69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~  146 (292)
T 1vl0_A           69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-A-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGEN  146 (292)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEechHHeECCCCCCCCCCCCCCCCccHHHHHHHHHHH
Confidence            9999764               345789999999988 6 99999999998754321 1     2356789999999988


Q ss_pred             HHHH
Q 040431          141 IFIY  144 (157)
Q Consensus       141 ~~~~  144 (157)
                      +...
T Consensus       147 ~~~~  150 (292)
T 1vl0_A          147 FVKA  150 (292)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8444

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.82  E-value=7.4e-20  Score=136.78  Aligned_cols=122  Identities=11%  Similarity=0.032  Sum_probs=95.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv   81 (157)
                      +|+|+|||||||||++++++|++.|+      +.     ..        ....+.++.+|++|++++.+++++  +|+||
T Consensus         6 ~~~vlVtGatG~iG~~l~~~L~~~g~------~~-----~~--------~~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vi   66 (319)
T 4b8w_A            6 SMRILVTGGSGLVGKAIQKVVADGAG------LP-----GE--------DWVFVSSKDADLTDTAQTRALFEKVQPTHVI   66 (319)
T ss_dssp             CCEEEEETCSSHHHHHHHHHHHTTTC------CT-----TC--------EEEECCTTTCCTTSHHHHHHHHHHSCCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhcCC------cc-----cc--------cccccCceecccCCHHHHHHHHhhcCCCEEE
Confidence            78999999999999999999999998      11     00        112345567999999999999986  99999


Q ss_pred             EcCCCcc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc----------CCccc-hhhHh
Q 040431           82 STVGHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM----------TTTLD-MLEMT  134 (157)
Q Consensus        82 ~~a~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~----------~~~~~-~~~~~  134 (157)
                      |+|+...                +.++.++++++.+.+ +++|||+||.++|+......          ..+.. .|+.+
T Consensus        67 h~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~s  145 (319)
T 4b8w_A           67 HLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-ARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYA  145 (319)
T ss_dssp             ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHH
T ss_pred             ECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHH
Confidence            9999853                556889999999998 89999999999997543211          11222 59999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |...|.+...+
T Consensus       146 K~~~E~~~~~~  156 (319)
T 4b8w_A          146 KRMIDVQNRAY  156 (319)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998885443

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.81  E-value=1.1e-18  Score=128.09  Aligned_cols=128  Identities=13%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.+....++.++.+|++|++++.++++       +
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVL-----DEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998     544443322223468889999999999988876       7


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        80 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  153 (254)
T 1hdc_A           80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLMGL-----ALTSSYGA  153 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----TTCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhccCC-----CCchhHHH
Confidence            999999999753                       122456777787776 7899999998776532     23568889


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       154 sK~a~~~~~  162 (254)
T 1hdc_A          154 SKWGVRGLS  162 (254)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988776663

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.81  E-value=9.8e-19  Score=132.96  Aligned_cols=131  Identities=15%  Similarity=0.173  Sum_probs=99.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|+|+|||||||||++++++|++.|++|++++|..... ....+.+  ....++.++.+|+.++.     +.++|+|||+
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~~~~D~~~~~-----~~~~d~vih~   98 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGR-KRNVEHW--IGHENFELINHDVVEPL-----YIEVDQIYHL   98 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-GGGTGGG--TTCTTEEEEECCTTSCC-----CCCCSEEEEC
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccc-hhhhhhh--ccCCceEEEeCccCChh-----hcCCCEEEEC
Confidence            67999999999999999999999999999999975432 1111111  12356899999998763     5689999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----------cCCccchhhHhHhh
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----------MTTTLDMLEMTELI  137 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------~~~~~~~~~~~~~~  137 (157)
                      |+...               +.++.++++++.+.+ . +||++||.++|+.....           ...+...|+.+|..
T Consensus        99 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~  176 (343)
T 2b69_A           99 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRV  176 (343)
T ss_dssp             CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHH
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHH
Confidence            99753               445889999999987 5 89999999998653211           12345679999999


Q ss_pred             hhHHHHH
Q 040431          138 DQKIFIY  144 (157)
Q Consensus       138 ~~~~~~~  144 (157)
                      .+.+...
T Consensus       177 ~E~~~~~  183 (343)
T 2b69_A          177 AETMCYA  183 (343)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887544

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.81  E-value=1.4e-18  Score=127.93  Aligned_cols=128  Identities=13%  Similarity=0.125  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc---CCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK---NLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~---~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     +++.+.+ ++..   ..++.++.+|++|++++.++++    
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ-----VDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS   81 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322 1111   4568899999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+||||||...                   .    ..++.+++.+.+.+ .++||++||..++...     ....
T Consensus        82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  155 (263)
T 3ai3_A           82 SFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNASICAVQPL-----WYEP  155 (263)
T ss_dssp             HHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----TTCH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcCCC-----CCcc
Confidence               7999999999753                   1    12444555566666 6899999998887643     2356


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       156 ~Y~~sK~a~~~~~  168 (263)
T 3ai3_A          156 IYNVTKAALMMFS  168 (263)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            7999998776663

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.81  E-value=1.5e-18  Score=126.84  Aligned_cols=131  Identities=12%  Similarity=0.047  Sum_probs=98.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCe-EEEEccCCChHHHHHHhc------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGV-NLVIGDVLNHESLVKAIK------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~~~------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.+....++ .++.+|++|++++.++++      +
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGARLILIDRE-----AAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAP   85 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence            4689999999999999999999999999999998     444443322213456 889999999999988873      6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+|||+||...                   +.+    ++.+++.+.+.+ .++||++||..++...+.   .+...|..
T Consensus        86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~~~---~~~~~Y~~  161 (254)
T 2wsb_A           86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSMSGTIVNRP---QFASSYMA  161 (254)
T ss_dssp             CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCSS---SCBHHHHH
T ss_pred             CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecchhccCCCC---CcchHHHH
Confidence            899999999753                   112    445566666776 789999999887654322   23478999


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       162 sK~a~~~~~~  171 (254)
T 2wsb_A          162 SKGAVHQLTR  171 (254)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998777643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.81  E-value=1.3e-18  Score=133.32  Aligned_cols=132  Identities=15%  Similarity=0.084  Sum_probs=100.7

Q ss_pred             CCC-CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEcc-CCChHHHHHHhcCcC
Q 040431            1 MAS-KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD-VLNHESLVKAIKQVD   78 (157)
Q Consensus         1 M~~-~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D-~~~~~~~~~~~~~~d   78 (157)
                      |++ +|+|+||||||++|++++++|++.|++|++++|+....   ..+.+..  ..++.++.+| ++|++++.++++++|
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~---~~~~l~~--~~~v~~v~~D~l~d~~~l~~~~~~~d   75 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL---IAEELQA--IPNVTLFQGPLLNNVPLMDTLFEGAH   75 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH---HHHHHHT--STTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh---hHHHHhh--cCCcEEEECCccCCHHHHHHHHhcCC
Confidence            543 57899999999999999999999999999999984321   1122221  2368899999 999999999999999


Q ss_pred             EEEEcCCCcc---hHHHHHHHHHHHHhcCCccEEEecccc--ccccCCCccCCccchhhHhHhhhhHHHH
Q 040431           79 VVISTVGHTL---LADQVKIIAAIKEAEGASRGTLRTQKG--KMSSLSSEMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus        79 ~vv~~a~~~~---~~~~~~l~~~~~~~~~~~~~v~~Ss~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      +|||+++...   ....+++++++.+.+.+++|||+||..  .++.      .+...|..+|...+.+..
T Consensus        76 ~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~------~~~~~y~~sK~~~E~~~~  139 (352)
T 1xgk_A           76 LAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGP------WPAVPMWAPKFTVENYVR  139 (352)
T ss_dssp             EEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSS------CCCCTTTHHHHHHHHHHH
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCC------CCCccHHHHHHHHHHHHH
Confidence            9999998652   334589999999875257999999975  2321      233568889988887743

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.81  E-value=5.8e-19  Score=128.31  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=97.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |+ +++++||||+|+||++++++|++.|++|++++|+     .++++.+.+....++.++.+|++|++++.++++     
T Consensus         1 Ms-~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   74 (235)
T 3l6e_A            1 MS-LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRR-----YQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEW   74 (235)
T ss_dssp             ---CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CC-CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence            55 7899999999999999999999999999999998     555544332223368999999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   ..++    +.+++.+.+.+  .+||++||..++...     .....
T Consensus        75 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~iv~isS~~~~~~~-----~~~~~  147 (235)
T 3l6e_A           75 GGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG--GVLANVLSSAAQVGK-----ANESL  147 (235)
T ss_dssp             HCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEEEECCEECCSSC-----SSHHH
T ss_pred             cCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEEeCHHhcCCC-----CCCcH
Confidence              5899999999853                   2223    34444444444  499999998776543     23568


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       148 Y~asKaa~~~~~~  160 (235)
T 3l6e_A          148 YCASKWGMRGFLE  160 (235)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877633

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.81  E-value=1.2e-18  Score=128.79  Aligned_cols=131  Identities=17%  Similarity=0.175  Sum_probs=101.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc--
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      |.+.++++||||+|+||+++++.|++.|++|++++|+     .++++.+. +.  ....+.++.+|++|++++.++++  
T Consensus         1 Ml~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~   75 (264)
T 3tfo_A            1 MVMDKVILITGASGGIGEGIARELGVAGAKILLGARR-----QARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAA   75 (264)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            6557899999999999999999999999999999998     54444322 22  23568889999999999988875  


Q ss_pred             -----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                           ++|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     ..
T Consensus        76 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~~~-----~~  149 (264)
T 3tfo_A           76 VDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGSIGALSVV-----PT  149 (264)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCCC-----TT
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcCHHHcccC-----CC
Confidence                 6899999999864                       222455666666666 6899999998877543     23


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       150 ~~~Y~asKaal~~l~  164 (264)
T 3tfo_A          150 AAVYCATKFAVRAIS  164 (264)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            567999998876663

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.81  E-value=1.9e-18  Score=127.13  Aligned_cols=130  Identities=13%  Similarity=0.067  Sum_probs=98.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     .++.+.+.......+.++.+|++|++++.++++       +
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   82 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGATVAIADID-----IERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGG   82 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998     555544433335578999999999999988876       7


Q ss_pred             cCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..++    +.+++.+.+.+..++||++||..++...     .....|..
T Consensus        83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~a  157 (259)
T 4e6p_A           83 LDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE-----ALVAIYCA  157 (259)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC-----CCChHHHH
Confidence            999999999853                   2223    3344444444323689999998876543     23568999


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       158 sK~a~~~~~~  167 (259)
T 4e6p_A          158 TKAAVISLTQ  167 (259)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998777633

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.81  E-value=5.1e-19  Score=129.25  Aligned_cols=132  Identities=14%  Similarity=0.067  Sum_probs=99.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-h--hcCCCeEEEEccCCChHHHHHHhc--
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-H--FKNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~--~~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      |.++++++||||+|+||++++++|++.|++|+++++.+    .++.+.+. +  ....++.++.+|++|++++.++++  
T Consensus         1 Ml~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~   76 (246)
T 3osu_A            1 MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGS----KEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEV   76 (246)
T ss_dssp             CCCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            65578999999999999999999999999999988763    23332221 1  124568899999999999988876  


Q ss_pred             -----CcCEEEEcCCCcc-------------------hHHHHH----HHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -----QVDVVISTVGHTL-------------------LADQVK----IIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -----~~d~vv~~a~~~~-------------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                           ++|++|||||...                   ..++..    +++.+.+.+ .++||++||..++...     ..
T Consensus        77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~  150 (246)
T 3osu_A           77 VSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSSVVGAVGN-----PG  150 (246)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCC-----TT
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcCCC-----CC
Confidence                 6899999999863                   222334    444446666 6899999998776542     24


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       151 ~~~Y~~sK~a~~~~~  165 (246)
T 3osu_A          151 QANYVATKAGVIGLT  165 (246)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH
Confidence            568999999776663

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.80  E-value=1.7e-19  Score=134.58  Aligned_cols=118  Identities=20%  Similarity=0.208  Sum_probs=97.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv~   82 (157)
                      |+|+|||||||+|++++++|+ .|++|++++|+..                   ++.+|+.|++++.+++++  +|+|||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~~~d~vih   60 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKLRPDVIVN   60 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhcCCCEEEE
Confidence            489999999999999999999 8999999998731                   246899999999999986  999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  141 (157)
                      +|+...               +.++.++++++.+.+ . +|||+||.++|+..+..      ...+...|+.+|...|.+
T Consensus        61 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~  138 (299)
T 1n2s_A           61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG-A-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKA  138 (299)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT-C-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred             CcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence            999754               455889999999887 5 89999999998754321      134567899999999888


Q ss_pred             HHH
Q 040431          142 FIY  144 (157)
Q Consensus       142 ~~~  144 (157)
                      ...
T Consensus       139 ~~~  141 (299)
T 1n2s_A          139 LQD  141 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.80  E-value=4.7e-19  Score=135.40  Aligned_cols=131  Identities=14%  Similarity=0.193  Sum_probs=101.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~   77 (157)
                      .|+|+|||||||||++++++|++.| ++|++++|+....   ....   .  .++. +.+|++|++.+.++++     ++
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~---~~~~---~--~~~~-~~~d~~~~~~~~~~~~~~~~~~~  116 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT---KFVN---L--VDLN-IADYMDKEDFLIQIMAGEEFGDV  116 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGG---GGGG---T--TTSC-CSEEEEHHHHHHHHHTTCCCSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcc---hhhc---c--cCce-EeeecCcHHHHHHHHhhcccCCC
Confidence            3789999999999999999999999 9999999874321   1111   1  1233 6789999999999887     59


Q ss_pred             CEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhhh
Q 040431           78 DVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELID  138 (157)
Q Consensus        78 d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~~  138 (157)
                      |+|||+|+...             +.++.++++++.+.+ + +||++||.++|+..+...      ..+...|+.+|...
T Consensus       117 d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~  194 (357)
T 2x6t_A          117 EAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLF  194 (357)
T ss_dssp             CEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHHHHHHH
T ss_pred             CEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHHHHHHH
Confidence            99999999753             456889999999988 7 999999999987543211      24567899999999


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      +.+...+
T Consensus       195 E~~~~~~  201 (357)
T 2x6t_A          195 DEYVRQI  201 (357)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8885544

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.80  E-value=1.6e-18  Score=131.56  Aligned_cols=135  Identities=19%  Similarity=0.270  Sum_probs=102.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh---cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF---KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||++++++|++.|++|+++.|+..+.+.++++.+.+.   ...++.++.+|++|++++.++++     
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~   84 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGE   84 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998655444554443321   24578999999999999998886     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+||||||...                   +.++    +.+++.+++.+ .++||++||..++....    .....
T Consensus        85 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~isS~~~~~~~~----~~~~~  159 (324)
T 3u9l_A           85 DGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK-HGLLIWISSSSSAGGTP----PYLAP  159 (324)
T ss_dssp             HSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCC----SSCHH
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEecchhccCCC----Ccchh
Confidence              7999999999753                   2333    44445557776 78999999987764221    23567


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       160 Y~asKaa~~~~~~  172 (324)
T 3u9l_A          160 YFAAKAAMDAIAV  172 (324)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877643

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.80  E-value=1.4e-18  Score=125.61  Aligned_cols=129  Identities=15%  Similarity=0.138  Sum_probs=97.4

Q ss_pred             CCC-CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            1 MAS-KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         1 M~~-~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      |+. +++++||||+|+||++++++|++.|++|++++|+     +++.+.+.... .++.++.+|++|++++.++++    
T Consensus         1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   74 (234)
T 2ehd_A            1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARD-----EKRLQALAAEL-EGALPLPGDVREEGDWARAVAAMEE   74 (234)
T ss_dssp             ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHS-TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHh-hhceEEEecCCCHHHHHHHHHHHHH
Confidence            543 4679999999999999999999999999999997     44444333222 268899999999999888775    


Q ss_pred             ---CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+|||+||...                   +    ...+.+++.+.+.+ .++||++||..++...     ....
T Consensus        75 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~  148 (234)
T 2ehd_A           75 AFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG-GGTIVNVGSLAGKNPF-----KGGA  148 (234)
T ss_dssp             HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCTTTTSCC-----TTCH
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEECCchhcCCC-----CCCc
Confidence               6899999999643                   1    12346667777776 7899999998776532     3456


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       149 ~Y~~sK~a~~~~  160 (234)
T 2ehd_A          149 AYNASKFGLLGL  160 (234)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHH
Confidence            899999876665

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.80  E-value=9.7e-19  Score=130.66  Aligned_cols=133  Identities=12%  Similarity=0.114  Sum_probs=106.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+...+....++.++.+|++|++++.++++   ++|+|
T Consensus        16 gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           16 QRTVVITGANSGLGAVTARELARRGATVIMAVRD-----TRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVL   90 (291)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            4789999999999999999999999999999998     555554433335678999999999999999987   57999


Q ss_pred             EEcCCCcc-----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC--------ccCCccchhhHhH
Q 040431           81 ISTVGHTL-----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS--------EMTTTLDMLEMTE  135 (157)
Q Consensus        81 v~~a~~~~-----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~--------~~~~~~~~~~~~~  135 (157)
                      |||||...                 +.++..+++++.... .++||++||..++.....        ....+...|..+|
T Consensus        91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK  169 (291)
T 3rd5_A           91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL-TDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSK  169 (291)
T ss_dssp             EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE-EEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHH
T ss_pred             EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhheeEeechhhccCCCCcccccccccCCCCcchHHHHH
Confidence            99999753                 555778888888876 679999999887643211        1124566899999


Q ss_pred             hhhhHHH
Q 040431          136 LIDQKIF  142 (157)
Q Consensus       136 ~~~~~~~  142 (157)
                      .+.+.+.
T Consensus       170 ~a~~~~~  176 (291)
T 3rd5_A          170 LANLLFT  176 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9876664

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.80  E-value=1.1e-18  Score=143.52  Aligned_cols=134  Identities=16%  Similarity=0.258  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH-HHHHhcCcCEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES-LVKAIKQVDVV   80 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~~~~~d~v   80 (157)
                      ++|+|+|||||||||++++++|++. |++|++++|+....     ..+  ....++.++.+|++|+++ +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~-----~~~--~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI-----SRF--LNHPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTT-----GGG--TTCTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhh-----hhh--ccCCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            3679999999999999999999998 89999999985332     111  123578999999999765 77788899999


Q ss_pred             EEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------------CCccchhh
Q 040431           81 ISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------------TTTLDMLE  132 (157)
Q Consensus        81 v~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------------~~~~~~~~  132 (157)
                      ||+|+...               +.++.++++++.+.+  ++||++||.++|+......             ..+...|+
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~  464 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYS  464 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHH
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcH
Confidence            99999754               346889999999876  7999999999986543211             02344799


Q ss_pred             HhHhhhhHHHHHH
Q 040431          133 MTELIDQKIFIYF  145 (157)
Q Consensus       133 ~~~~~~~~~~~~~  145 (157)
                      .+|...|.+...+
T Consensus       465 ~sK~~~E~~~~~~  477 (660)
T 1z7e_A          465 VSKQLLDRVIWAY  477 (660)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998885443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.80  E-value=8.4e-20  Score=130.10  Aligned_cols=117  Identities=11%  Similarity=0.148  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +|+|+||||||++|++++++|++.|+  +|++++|++..            ...++.++.+|+.|++++.+++  +|+||
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------------~~~~~~~~~~D~~~~~~~~~~~--~d~vi   70 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------------EHPRLDNPVGPLAELLPQLDGS--IDTAF   70 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------------CCTTEECCBSCHHHHGGGCCSC--CSEEE
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------------cCCCceEEeccccCHHHHHHhh--hcEEE
Confidence            57999999999999999999999998  99999998542            1246788899999999888877  99999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+|+...             ..++.++++++.+.+ .++||++||.+++..       +...|..+|...+.+.
T Consensus        71 ~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~~-------~~~~y~~sK~~~e~~~  136 (215)
T 2a35_A           71 CCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADAK-------SSIFYNRVKGELEQAL  136 (215)
T ss_dssp             ECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCTT-------CSSHHHHHHHHHHHHH
T ss_pred             ECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcC-CCEEEEECCcccCCC-------CccHHHHHHHHHHHHH
Confidence            9999754             446888999999987 889999999988863       3568999998887774

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.80  E-value=2.2e-18  Score=126.73  Aligned_cols=131  Identities=11%  Similarity=0.048  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCch-hhHh-hhh---cCCCeEEEEccCCChHHHHHHhc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK-SQLL-DHF---KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~-~~~~-~~~---~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |.+.++++||||+|+||++++++|++.|++|++++|+     +++ .+.+ ++.   ...++.++.+|++|++++.++++
T Consensus         1 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   75 (260)
T 1x1t_A            1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG-----DAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVD   75 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS-----CHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCC-----cchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHH
Confidence            4446899999999999999999999999999999988     433 3322 111   13568899999999999988876


Q ss_pred             -------CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccC
Q 040431           76 -------QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 -------~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                             ++|++|||||...                   .    ...+.+++.+.+.+ .++||++||..++...     
T Consensus        76 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----  149 (260)
T 1x1t_A           76 NAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLVAS-----  149 (260)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----
T ss_pred             HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcHHhCcCC-----
Confidence                   6999999999753                   1    12444555566666 6899999998776532     


Q ss_pred             CccchhhHhHhhhhHHH
Q 040431          126 TTLDMLEMTELIDQKIF  142 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~  142 (157)
                      .....|..+|.+.+.+.
T Consensus       150 ~~~~~Y~~sK~a~~~~~  166 (260)
T 1x1t_A          150 ANKSAYVAAKHGVVGFT  166 (260)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHH
Confidence            23568999998776663

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.80  E-value=4.7e-18  Score=124.33  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-HhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+..    ++.+ .+.+ ...++.++.+|++|++++.++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA----PEAEAAIRN-LGRRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC----HHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCch----hHHHHHHHh-cCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999831    3332 2222 23568899999999999988764       


Q ss_pred             CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|+||||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     .....|.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~  155 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWLKI-----EAYTHYI  155 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGSCC-----SSCHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhccCC-----CCchhHH
Confidence            6899999999753                   112    455566677776 6899999998877542     2356888


Q ss_pred             HhHhhhhHHH
Q 040431          133 MTELIDQKIF  142 (157)
Q Consensus       133 ~~~~~~~~~~  142 (157)
                      .+|.+.+.+.
T Consensus       156 asK~a~~~~~  165 (249)
T 2ew8_A          156 STKAANIGFT  165 (249)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8988776663

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.80  E-value=2.4e-18  Score=125.69  Aligned_cols=129  Identities=11%  Similarity=0.063  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDIN-----ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999998     4443322 121  23468899999999999998876     


Q ss_pred             --CcCEEEEcCCCcc------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 --QVDVVISTVGHTL------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 --~~d~vv~~a~~~~------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                        ++|+|||+||...                  ..++.+++++    +.+.+ .++||++||..++...     .+...|
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~Y  159 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAENKN-----INMTSY  159 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCCC-----TTCHHH
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcCCC-----CCCccc
Confidence              7999999999753                  2233344444    45555 6899999998877542     245689


Q ss_pred             hHhHhhhhHHHH
Q 040431          132 EMTELIDQKIFI  143 (157)
Q Consensus       132 ~~~~~~~~~~~~  143 (157)
                      ..+|.+.+.+..
T Consensus       160 ~~sK~a~~~~~~  171 (255)
T 1fmc_A          160 ASSKAAASHLVR  171 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998877643

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.80  E-value=2.3e-18  Score=127.98  Aligned_cols=128  Identities=15%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+.......+.++.+|++|++++.++++       +
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVN-----EDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGR  101 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999998     555554433335678999999999999988876       6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus       102 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  175 (277)
T 4dqx_A          102 VDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG-GGSIINTTSYTATSAI-----ADRTAYVA  175 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT-CEEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhCcCC-----CCChhHHH
Confidence            899999999753                   222    444555555555 6799999998877542     23568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       176 sKaa~~~l~  184 (277)
T 4dqx_A          176 SKGAISSLT  184 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998877663

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.80  E-value=5.3e-19  Score=138.35  Aligned_cols=136  Identities=14%  Similarity=0.210  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hh--------hhcCCCeEEEEccCCChHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LD--------HFKNLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~--------~~~~~~v~~~~~D~~~~~~~~   71 (157)
                      +|+|+||||||+||++++++|++.|++|++++|+....  +..+.    +.        .....++.++.+|++|++++.
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~  146 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEE--IAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV  146 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHH--HHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChH--HHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence            57999999999999999999999999999999984310  01111    11        112367999999999988887


Q ss_pred             HHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC--------------ccC
Q 040431           72 KAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS--------------EMT  125 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~--------------~~~  125 (157)
                       .+.++|+|||+|+...            +.++.++++++.+ + .++||++||.++ +....              ...
T Consensus       147 -~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~~~  222 (427)
T 4f6c_A          147 -LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ  222 (427)
T ss_dssp             -CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEEEGGG-GSEECSSCSCCEECTTCSCSSC
T ss_pred             -CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEECchHh-CCCccCCCCCccccccccccCC
Confidence             6778999999999864            5668999999998 5 789999999888 32100              002


Q ss_pred             CccchhhHhHhhhhHHHHHH
Q 040431          126 TTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~  145 (157)
                      .+...|..+|...|.+...+
T Consensus       223 ~~~~~Y~~sK~~~E~~~~~~  242 (427)
T 4f6c_A          223 LLTSPYTRSKFYSELKVLEA  242 (427)
T ss_dssp             CCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHH
Confidence            37789999999999886654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.79  E-value=2e-18  Score=127.62  Aligned_cols=127  Identities=14%  Similarity=0.058  Sum_probs=96.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++++.+.+....++.++.+|++|++++.++++       +
T Consensus        27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (266)
T 3grp_A           27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR-----EDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEG  101 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999987     555554433335678999999999999988876       6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus       102 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~~~~~~~-----~~~~~Y~a  175 (266)
T 3grp_A          102 IDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSIVGVVGN-----PGQTNYCA  175 (266)
T ss_dssp             CCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC------------CHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCHHHcCCC-----CCchhHHH
Confidence            999999999864                   122    566677777776 6899999998776432     24568999


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       176 sKaa~~~~  183 (266)
T 3grp_A          176 AKAGLIGF  183 (266)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876665

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.79  E-value=3.1e-18  Score=124.84  Aligned_cols=129  Identities=12%  Similarity=0.023  Sum_probs=98.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh---cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF---KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~---~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.   ...++.++.+|++|++++.++++    
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLS-----AETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATME   76 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999998     44443222 11   13468899999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc----------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 ---QVDVVISTVGHTL----------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 ---~~d~vv~~a~~~~----------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                         ++|+|||+||...                      .    ...+.+++.+.+.+ .++||++||..++...     .
T Consensus        77 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~  150 (250)
T 2cfc_A           77 QFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASVASLVAF-----P  150 (250)
T ss_dssp             HHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----T
T ss_pred             HhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhccCC-----C
Confidence               7999999998632                      1    11345666666666 7899999998776532     2


Q ss_pred             ccchhhHhHhhhhHHHH
Q 040431          127 TLDMLEMTELIDQKIFI  143 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~~  143 (157)
                      ....|..+|.+.+.+..
T Consensus       151 ~~~~Y~~sK~a~~~~~~  167 (250)
T 2cfc_A          151 GRSAYTTSKGAVLQLTK  167 (250)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHH
Confidence            35689999998777643

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.79  E-value=4e-18  Score=125.39  Aligned_cols=127  Identities=12%  Similarity=0.145  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc----CCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK----NLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~----~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++..    ..++.++.+|++|++++.++++   
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGARLLLFSRN-----REKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKAR   81 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322 1211    2268899999999999998886   


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+||||||...                       ...++.+++.+.+.+ .++||++||..++...     ....
T Consensus        82 ~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  155 (260)
T 2z1n_A           82 DLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSVTLLRPW-----QDLA  155 (260)
T ss_dssp             HTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----TTBH
T ss_pred             HhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhcCCC-----CCCc
Confidence               5999999999643                       112466777777776 7899999998877542     2356


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       156 ~Y~~sK~a~~~~  167 (260)
T 2z1n_A          156 LSNIMRLPVIGV  167 (260)
T ss_dssp             HHHHHTHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            788888876665

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.79  E-value=1.7e-18  Score=126.77  Aligned_cols=127  Identities=16%  Similarity=0.081  Sum_probs=98.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+.+.......++.+|++|++++.++++       +
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATS-----ESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGG   83 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999999999999999998     555554433334457889999999999988876       6


Q ss_pred             cCEEEEcCCCcc-------------------hH----HHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LA----DQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~----~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..    .++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  157 (248)
T 3op4_A           84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGSVVGTMGN-----AGQANYAA  157 (248)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCC-----TTCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcCCC-----CCChHHHH
Confidence            999999999754                   22    2444555566666 6899999998776532     34568999


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       158 sK~a~~~l  165 (248)
T 3op4_A          158 AKAGVIGF  165 (248)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876665

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.79  E-value=3.9e-18  Score=125.08  Aligned_cols=128  Identities=13%  Similarity=0.127  Sum_probs=99.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRN-----GEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESS-----GGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            5789999999999999999999999999999998     44433222 11  14578999999999999998886     


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     .....|
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y  155 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGATASLRGG-----SGFAAF  155 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTCCC-----TTCHHH
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHHcCCC-----CCCccH
Confidence             6799999999753                       222455666667776 6899999998776543     235689


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       156 ~asKaa~~~l~  166 (252)
T 3h7a_A          156 ASAKFGLRAVA  166 (252)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998776663

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.79  E-value=2.9e-18  Score=125.15  Aligned_cols=129  Identities=17%  Similarity=0.115  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +.++++||||+|+||++++++|++.|++|++++|.+    +++.+.+ ++.  ...++.++.+|++|++++.++++    
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGN----EQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD   78 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999831    3333322 111  13468899999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++|||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     ....
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  152 (246)
T 2uvd_A           79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASVVGVTGN-----PGQA  152 (246)
T ss_dssp             HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----TTBH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCHHhcCCC-----CCCc
Confidence               6999999999753                   112    556667777776 6899999998765432     2356


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       153 ~Y~asK~a~~~~  164 (246)
T 2uvd_A          153 NYVAAKAGVIGL  164 (246)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            788888876655

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.79  E-value=4.2e-18  Score=124.94  Aligned_cols=129  Identities=10%  Similarity=0.021  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+..   .+..+.+.. ...++.++.+|++|++++.++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~l~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP---APALAEIAR-HGVKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC---HHHHHHHHT-TSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch---HHHHHHHHh-cCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            679999999999999999999999999999998743   111222222 13468889999999999998887       7


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                       ...++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  153 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASVHGLVGS-----TGKAAYVA  153 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCchhccCC-----CCchhHHH
Confidence            999999999643                       123566777777776 7899999998876542     23567888


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       154 sK~a~~~~~  162 (255)
T 2q2v_A          154 AKHGVVGLT  162 (255)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776663

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.79  E-value=2.4e-18  Score=126.60  Aligned_cols=131  Identities=11%  Similarity=0.121  Sum_probs=97.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEE-ecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVL-VRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      |++.++++||||+|+||++++++|++.|++|+++ .|+     .++.+.+. +.  ...++.++.+|++|++++.++++ 
T Consensus         1 M~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   75 (258)
T 3oid_A            1 MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARS-----KKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQ   75 (258)
T ss_dssp             --CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC-----HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCC-----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence            6657899999999999999999999999999987 666     43333222 21  23578999999999999988876 


Q ss_pred             ------CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 ------QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 ------~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                            ++|++|||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     .
T Consensus        76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~  149 (258)
T 3oid_A           76 IDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISSLGSIRYL-----E  149 (258)
T ss_dssp             HHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEEGGGTSBC-----T
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhCCCC-----C
Confidence                  5799999998643                   222    444555556665 6899999998776532     3


Q ss_pred             ccchhhHhHhhhhHHH
Q 040431          127 TLDMLEMTELIDQKIF  142 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~  142 (157)
                      ....|..+|.+.+.+.
T Consensus       150 ~~~~Y~asKaa~~~l~  165 (258)
T 3oid_A          150 NYTTVGVSKAALEALT  165 (258)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHH
Confidence            4568999999877663

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.79  E-value=6.1e-18  Score=122.90  Aligned_cols=137  Identities=16%  Similarity=0.114  Sum_probs=99.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      |+ +++++||||+|+||++++++|++.|  ++|++++|+     +++.+.+.+....++.++.+|++|++++.++++   
T Consensus         1 m~-~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~-----~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   74 (250)
T 1yo6_A            1 MS-PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD-----VEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVG   74 (250)
T ss_dssp             CC-CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS-----GGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CC-CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC-----HHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHH
Confidence            54 6899999999999999999999999  999999998     433333333334578999999999999988876   


Q ss_pred             ------CcCEEEEcCCCcc--------------------hHHHHHHH----HHHHHh------cC----CccEEEecccc
Q 040431           76 ------QVDVVISTVGHTL--------------------LADQVKII----AAIKEA------EG----ASRGTLRTQKG  115 (157)
Q Consensus        76 ------~~d~vv~~a~~~~--------------------~~~~~~l~----~~~~~~------~~----~~~~v~~Ss~~  115 (157)
                            ++|+|||+||...                    +.++..++    +.+.+.      +.    .++||++||..
T Consensus        75 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  154 (250)
T 1yo6_A           75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL  154 (250)
T ss_dssp             HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred             HhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCc
Confidence                  7999999998643                    12233333    334333      20    36899999987


Q ss_pred             ccccCCCc--cCCccchhhHhHhhhhHHHH
Q 040431          116 KMSSLSSE--MTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus       116 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  143 (157)
                      ++...+..  .+.+...|..+|.+.+.+..
T Consensus       155 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~  184 (250)
T 1yo6_A          155 GSITDNTSGSAQFPVLAYRMSKAAINMFGR  184 (250)
T ss_dssp             GCSTTCCSTTSSSCBHHHHHHHHHHHHHHH
T ss_pred             cccCCcccccccCCccHHHHHHHHHHHHHH
Confidence            76543211  12456789999998877643

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.79  E-value=3.1e-18  Score=125.02  Aligned_cols=128  Identities=13%  Similarity=0.073  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     .++.+.+.+.....+.++.+|++|.+++.++++   ++|++
T Consensus        14 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A           14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSN-----EEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDIL   88 (249)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            5789999999999999999999999999999998     666555444445678999999999999999887   68999


Q ss_pred             EEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      |||||...                   +.+    ++.+++.+.+.+ .++||++||..++...     .....|..+|.+
T Consensus        89 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~sK~a  162 (249)
T 3f9i_A           89 VCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR-YGRIINISSIVGIAGN-----PGQANYCASKAG  162 (249)
T ss_dssp             EECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCC--CC-----SCSHHHHHHHHH
T ss_pred             EECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEccHHhccCC-----CCCchhHHHHHH
Confidence            99999754                   122    344455556665 6899999998877543     245689999997


Q ss_pred             hhHHH
Q 040431          138 DQKIF  142 (157)
Q Consensus       138 ~~~~~  142 (157)
                      .+.+.
T Consensus       163 ~~~~~  167 (249)
T 3f9i_A          163 LIGMT  167 (249)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76663

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.79  E-value=1.6e-18  Score=129.66  Aligned_cols=129  Identities=15%  Similarity=0.182  Sum_probs=101.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC-----cCE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ-----VDV   79 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-----~d~   79 (157)
                      +|+|||||||||++++++|++.| ++|++++|.+...   +...+.     ++. +.+|++|++.+.+++++     +|+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~---~~~~~~-----~~~-~~~d~~~~~~~~~~~~~~~~~~~d~   71 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT---KFVNLV-----DLN-IADYMDKEDFLIQIMAGEEFGDVEA   71 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG---GGHHHH-----TSC-CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCc---hhhhcC-----cce-eccccccHHHHHHHHhccccCCCcE
Confidence            58999999999999999999999 9999999874321   111111     223 67899999999999875     999


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhhhhH
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELIDQK  140 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~~~~  140 (157)
                      |||+|+...             +.++.++++++.+.+ + +||++||.++|+..+...      ..+...|+.+|...+.
T Consensus        72 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~  149 (310)
T 1eq2_A           72 IFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDE  149 (310)
T ss_dssp             EEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHHH
T ss_pred             EEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Confidence            999999753             456889999999998 7 999999999987543211      3456789999999988


Q ss_pred             HHHHH
Q 040431          141 IFIYF  145 (157)
Q Consensus       141 ~~~~~  145 (157)
                      +...+
T Consensus       150 ~~~~~  154 (310)
T 1eq2_A          150 YVRQI  154 (310)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            85443

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.79  E-value=6.7e-18  Score=124.29  Aligned_cols=129  Identities=15%  Similarity=0.031  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.+....++.++.+|++|++++.++++       +
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~   86 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLD-----VMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGG   86 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999999999999999998     544443322222368889999999999988876       7


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..+    .+.+++.+.+.+..++||++||..++...     .....|..
T Consensus        87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~~  161 (263)
T 3ak4_A           87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA-----PLLAHYSA  161 (263)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC-----TTCHHHHH
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC-----CCchhHHH
Confidence            999999999643                   122    33334444444314799999998776432     23568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       162 sK~a~~~~~  170 (263)
T 3ak4_A          162 SKFAVFGWT  170 (263)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998776663

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.79  E-value=2.4e-18  Score=125.45  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhc-CCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFK-NLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~-~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.. ..++.++.+|++|++++.++++      
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH-----SDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999998     44443222 221 1468999999999999988876      


Q ss_pred             -CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCC-ccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGA-SRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~-~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|+|||+||...                   +    ..++.+++.+.+.+ . ++||++||..++...     .....
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~-----~~~~~  154 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGFVGD-----PSLGA  154 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEEECCGGGTSCC-----TTCHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCCchhccCC-----CCCcc
Confidence             4899999999753                   1    12455666666665 5 799999998876543     24568


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       155 Y~~sK~a~~~~~  166 (251)
T 1zk4_A          155 YNASKGAVRIMS  166 (251)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHH
Confidence            999998877664

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.79  E-value=6.8e-18  Score=124.97  Aligned_cols=128  Identities=14%  Similarity=0.055  Sum_probs=98.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+...+....++.++.+|++|++++.++++       +
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGARVVLADLP-----ETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGR   85 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECT-----TSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999998     434433322225678999999999999998876       7


Q ss_pred             cCEEEEcCCCcc---------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           77 VDVVISTVGHTL---------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~---------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      +|++|||||...                     ..+    ++.+++.+.+.+ .++||++||..++...     .....|
T Consensus        86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y  159 (271)
T 3tzq_B           86 LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG-GGAIVNISSATAHAAY-----DMSTAY  159 (271)
T ss_dssp             CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSBC-----SSCHHH
T ss_pred             CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECCHHHcCCC-----CCChHH
Confidence            999999999762                     222    344444557766 6899999998876543     345689


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       160 ~asKaa~~~l~  170 (271)
T 3tzq_B          160 ACTKAAIETLT  170 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877663

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.79  E-value=7.8e-18  Score=122.30  Aligned_cols=130  Identities=16%  Similarity=0.099  Sum_probs=96.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+... ..+++++.+|++|++++.++++   ++|+|
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT-----NSDLVSLAKE-CPGIEPVCVDLGDWDATEKALGGIGPVDLL   80 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHH-STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHh-ccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence            5789999999999999999999999999999998     4444433222 1357788999999999999987   48999


Q ss_pred             EEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      ||+||...                   +.++..++++    +.+.+..++||++||..++...     .....|..+|.+
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----~~~~~Y~~sK~a  155 (244)
T 1cyd_A           81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF-----PNLITYSSTKGA  155 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-----TTBHHHHHHHHH
T ss_pred             EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC-----CCcchhHHHHHH
Confidence            99999642                   2333444444    3333313789999998877543     235689999998


Q ss_pred             hhHHHHH
Q 040431          138 DQKIFIY  144 (157)
Q Consensus       138 ~~~~~~~  144 (157)
                      .+.+...
T Consensus       156 ~~~~~~~  162 (244)
T 1cyd_A          156 MTMLTKA  162 (244)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777433

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.79  E-value=2.1e-18  Score=126.63  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... .+..+.+......++.++.+|++|++++.++++       +
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA-VEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH-HHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhh-HHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999999999999974322 111222222224578999999999999888775       4


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCC--ccCCccchh
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSS--EMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~--~~~~~~~~~  131 (157)
                      +|+|||+||...                   +.++.+++++    +.+.+..++||++||..++...+.  ....+...|
T Consensus        93 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~Y  172 (265)
T 1h5q_A           93 ISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFY  172 (265)
T ss_dssp             EEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCHHH
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccccccccccccc
Confidence            899999999753                   2223344444    344431378999999877643321  112346789


Q ss_pred             hHhHhhhhHHHH
Q 040431          132 EMTELIDQKIFI  143 (157)
Q Consensus       132 ~~~~~~~~~~~~  143 (157)
                      ..+|.+.+.+..
T Consensus       173 ~~sK~a~~~~~~  184 (265)
T 1h5q_A          173 NSSKAACSNLVK  184 (265)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998777643

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.79  E-value=5.9e-18  Score=124.44  Aligned_cols=129  Identities=13%  Similarity=0.161  Sum_probs=96.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHh------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAI------   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~------   74 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.+++      
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRN-----QKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     4443322 222  1346888999999999998887      


Q ss_pred             --cCcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           75 --KQVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        75 --~~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        .++|++|||||...                   ..+    .+.+++.+.+.+ .++||++||..++...     ....
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  157 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGALAV-----PYEA  157 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTSCC-----TTCH
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccCC-----CCcc
Confidence              46999999999642                   222    333444445665 6899999998776532     2356


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       158 ~Y~~sK~a~~~~~~  171 (260)
T 2ae2_A          158 VYGATKGAMDQLTR  171 (260)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            79999988777643

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.79  E-value=2e-18  Score=128.56  Aligned_cols=129  Identities=12%  Similarity=0.073  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.    .+..+.    +.......+.++.+|++|++++.++++    
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGA----PDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCC----HHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC----hHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999852    233222    222224578999999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++|||||...                   +.+    .+.+++.+.+.+ .++||++||..++...     ....
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  174 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIASAHGLVAS-----PFKS  174 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----TTCH
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCcccccCC-----CCch
Confidence               6899999999853                   222    444555556666 6899999998776543     2346


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       175 ~Y~asKaa~~~l~  187 (281)
T 3v2h_A          175 AYVAAKHGIMGLT  187 (281)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8999998776663

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.79  E-value=5.3e-18  Score=125.37  Aligned_cols=124  Identities=17%  Similarity=0.209  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||+++++.|++.|++|++++|+     .++++   +.....+.++.+|++|++++.++++       +
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~---~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARR-----VERLK---ALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESC-----HHHHH---TTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHH---HhhcCCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            4689999999999999999999999999999998     44443   2233478899999999999988876       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS~~~~~~~-----~~~~~Y~a  161 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISSIAGKKTF-----PDHAAYCG  161 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCC-----TTCHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhCCCC-----CCCchHHH
Confidence            899999999853                       222444666667776 7899999998877543     23568999


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       162 sK~a~~~~  169 (266)
T 3p19_A          162 TKFAVHAI  169 (266)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99877666

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.79  E-value=2.4e-18  Score=126.82  Aligned_cols=129  Identities=17%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     .++.+..    ......++.++.+|++|++++.++++    
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS-----TADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVE   84 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4444322    22222578999999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEecccccc-ccCCCccCCcc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKM-SSLSSEMTTTL  128 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~-~~~~~~~~~~~  128 (157)
                         ++|++|||||...                   +.+    ++.+++.+.+.+ .++||++||..+. ..     ....
T Consensus        85 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~  158 (262)
T 3pk0_A           85 EFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSITGPITG-----YPGW  158 (262)
T ss_dssp             HHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCSBTTTBC-----CTTC
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechhhccCC-----CCCC
Confidence               7999999999753                   122    445556666666 7899999997654 22     1345


Q ss_pred             chhhHhHhhhhHHHH
Q 040431          129 DMLEMTELIDQKIFI  143 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (157)
                      ..|..+|.+.+.+..
T Consensus       159 ~~Y~asK~a~~~l~~  173 (262)
T 3pk0_A          159 SHYGATKAAQLGFMR  173 (262)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            689999998776633

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.79  E-value=8.2e-18  Score=124.14  Aligned_cols=128  Identities=11%  Similarity=0.104  Sum_probs=98.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh----cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF----KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~----~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.    ...++.++.+|++|++++.++++   
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   87 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS-----SEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT   87 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     44433221 11    14568899999999999988876   


Q ss_pred             ----CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 ----QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ----~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                          ++|+||||||...                        ...++.+++.+.+.+ .++||++||..++...     ..
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~  161 (267)
T 1iy8_A           88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIRGI-----GN  161 (267)
T ss_dssp             HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSBC-----SS
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhccCC-----CC
Confidence                6899999998642                        122456777777776 7899999998776432     23


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       162 ~~~Y~asK~a~~~~~  176 (267)
T 1iy8_A          162 QSGYAAAKHGVVGLT  176 (267)
T ss_dssp             BHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH
Confidence            568889988776663

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.79  E-value=6e-18  Score=123.84  Aligned_cols=128  Identities=13%  Similarity=0.143  Sum_probs=98.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~   77 (157)
                      |+++||||+|+||++++++|++.|++|++++|+     +++.+.+.+....++.++.+|++|++++.++++       ++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   75 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRR-----QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNI   75 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            479999999999999999999999999999998     555444332223568899999999999998876       58


Q ss_pred             CEEEEcCCCcc--------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           78 DVVISTVGHTL--------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        78 d~vv~~a~~~~--------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      |++|||||...                    .    ..++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  149 (248)
T 3asu_A           76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGSTAGSWPY-----AGGNVYGA  149 (248)
T ss_dssp             CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCC-----TTCHHHHH
T ss_pred             CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEccchhccCC-----CCCchHHH
Confidence            99999999641                    1    12445555565666 6899999998776432     23568999


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       150 sKaa~~~~~~  159 (248)
T 3asu_A          150 TKAFVRQFSL  159 (248)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998777743

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.78  E-value=2.8e-18  Score=124.81  Aligned_cols=128  Identities=16%  Similarity=0.112  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh---cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF---KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~---~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.   ...++.++.+|++|++++.++++    
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS-----GERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYN   81 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----hHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     44443222 11   24578899999999999998886    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+|||+||...                   +.++    +.+++.+.+.+ .++||++||..++...     ....
T Consensus        82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~  155 (248)
T 2pnf_A           82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNISSVVGFTGN-----VGQV  155 (248)
T ss_dssp             HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEECCHHHHHCC-----TTCH
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhcCCC-----CCCc
Confidence               7999999999753                   2223    45556666666 7899999997665432     2346


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       156 ~Y~~sK~a~~~~~  168 (248)
T 2pnf_A          156 NYSTTKAGLIGFT  168 (248)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            7888888776663

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.78  E-value=6.7e-18  Score=124.85  Aligned_cols=130  Identities=14%  Similarity=0.163  Sum_probs=97.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcC-CCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKN-LGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~-~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     .++.+.+ ++... .++.++.+|++|++++.++++      
T Consensus        16 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   90 (278)
T 2bgk_A           16 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA-----DDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH   90 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC-----hhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999887     4333322 22221 268999999999999998876      


Q ss_pred             -CcCEEEEcCCCcc---------------------hHHHHHHHHHHH----HhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 -QVDVVISTVGHTL---------------------LADQVKIIAAIK----EAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 -~~d~vv~~a~~~~---------------------~~~~~~l~~~~~----~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                       ++|+|||+||...                     +.++..+++++.    +.+ .++||++||..++...+    .+..
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~~----~~~~  165 (278)
T 2bgk_A           91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTAGE----GVSH  165 (278)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCCCT----TSCH
T ss_pred             CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCeEEEEeeccccCCCC----CCCc
Confidence             6999999999642                     223444444443    345 67999999988876432    2456


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       166 ~Y~~sK~a~~~~~~  179 (278)
T 2bgk_A          166 VYTATKHAVLGLTT  179 (278)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH
Confidence            89999998777643

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.78  E-value=9.8e-18  Score=122.83  Aligned_cols=131  Identities=16%  Similarity=0.182  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     .++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGARVIIADLD-----EAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ   87 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     4333222 111  13468999999999999988876     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHHHHHHH----HHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL--------------------LADQVKII----AAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~~~~l~----~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|+|||+||...                    +.++.+++    +.+.+.+ .++|+++||..++...+.   .+..
T Consensus        88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~---~~~~  163 (260)
T 3awd_A           88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK-QGVIVAIGSMSGLIVNRP---QQQA  163 (260)
T ss_dssp             HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCSS---SCCH
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEecchhcccCCC---CCcc
Confidence              6899999999642                    22233344    4444555 689999999876643221   2346


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       164 ~Y~~sK~a~~~~~~  177 (260)
T 3awd_A          164 AYNASKAGVHQYIR  177 (260)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            89999998877643

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.78  E-value=6.5e-18  Score=125.62  Aligned_cols=129  Identities=10%  Similarity=0.043  Sum_probs=100.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+.+....++.++.+|++|++++.++++       +
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADID-----GDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGG  103 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998     555554433335678999999999999888775       6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus       104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~~~-----~~~~~Y~a  177 (277)
T 3gvc_A          104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG-GGAIVNLSSLAGQVAV-----GGTGAYGM  177 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccCC-----CCchhHHH
Confidence            899999999854                   222    445555566665 6899999998776532     34568999


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       178 sKaa~~~l~~  187 (277)
T 3gvc_A          178 SKAGIIQLSR  187 (277)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987776633

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.78  E-value=3.7e-18  Score=125.61  Aligned_cols=119  Identities=16%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC--cCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~--~d~vv~   82 (157)
                      |+|+||||||++|++++++|++ |++|++++|+...         .    .+   +.+|++|++++.+++++  +|+|||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~---------~----~~---~~~Dl~~~~~~~~~~~~~~~d~vi~   63 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEI---------Q----GG---YKLDLTDFPRLEDFIIKKRPDVIIN   63 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCC---------T----TC---EECCTTSHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcC---------C----CC---ceeccCCHHHHHHHHHhcCCCEEEE
Confidence            4799999999999999999995 8999999998421         0    12   78999999999999986  999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-----CCccchhhHhHhhhhHHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-----TTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  142 (157)
                      +||...               +.++.++++++.+.+ . +||++||..+|+..+...     ..+...|..+|...+.+.
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~  141 (273)
T 2ggs_A           64 AAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID-S-YIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFA  141 (273)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEEEEGGGSCSSSCSBCTTSCCCCSSHHHHHHHHHHHHH
T ss_pred             CCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC-C-eEEEEecceeEcCCCCCcCCCCCCCCCCHHHHHHHHHHHHH
Confidence            999864               345889999999887 5 899999999986543211     234678999999887764

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.78  E-value=4.4e-18  Score=124.49  Aligned_cols=124  Identities=12%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ....+.++.+|++|++++.++++     
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN-----AEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     44444322 11  23568899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc----------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 --QVDVVISTVGHTL----------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 --~~d~vv~~a~~~~----------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                        ++|+||||||...                      +.+    ++.+++.+.+.+ .++||++||..++.        +
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--------~  154 (253)
T 3qiv_A           84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAAWL--------Y  154 (253)
T ss_dssp             HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC--------------
T ss_pred             cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccccC--------C
Confidence              7999999999731                      122    566777777776 68999999988773        2


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+.+.+
T Consensus       155 ~~~Y~asK~a~~~~  168 (253)
T 3qiv_A          155 SNYYGLAKVGINGL  168 (253)
T ss_dssp             -----CCHHHHHHH
T ss_pred             CchhHHHHHHHHHH
Confidence            45688888877666

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.78  E-value=6.4e-18  Score=125.68  Aligned_cols=131  Identities=13%  Similarity=0.136  Sum_probs=96.6

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc--
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      |+++++++||||+|+||++++++|++.|++|++++|+     .++.+.+ ++.  ...++.++.+|++|++++.++++  
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~   95 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARD-----AKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAA   95 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4446789999999999999999999999999999998     4444322 222  24578999999999999888775  


Q ss_pred             -----CcCEEEEcCCCcc-------------------hHHHHHHHHH------HHHhcCCccEEEeccccccccCCCccC
Q 040431           76 -----QVDVVISTVGHTL-------------------LADQVKIIAA------IKEAEGASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 -----~~d~vv~~a~~~~-------------------~~~~~~l~~~------~~~~~~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                           ++|+||||||...                   ..++..++++      +.+.+ .++||++||..++...     
T Consensus        96 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~-~g~iV~isS~~~~~~~-----  169 (279)
T 3sju_A           96 VERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAG-WGRIVNIASTGGKQGV-----  169 (279)
T ss_dssp             HHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHT-CEEEEEECCGGGTSCC-----
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcC-CcEEEEECChhhccCC-----
Confidence                 6899999999854                   2334444444      34455 6899999998776532     


Q ss_pred             CccchhhHhHhhhhHHH
Q 040431          126 TTLDMLEMTELIDQKIF  142 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~  142 (157)
                      .....|..+|.+.+.+.
T Consensus       170 ~~~~~Y~asKaa~~~l~  186 (279)
T 3sju_A          170 MYAAPYTASKHGVVGFT  186 (279)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHH
Confidence            23567999998776663

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.78  E-value=1.1e-17  Score=123.30  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=96.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|++.|++|++++|+....           ....+.++.+|++|++++.++++       +
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-----------~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   96 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS-----------ADPDIHTVAGDISKPETADRIVREGIERFGR   96 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC-----------SSTTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc-----------ccCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999999999985432           12368899999999999988876       7


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..+    ++.+++.+.+.+ .++||++||..++...+   ..+...|..
T Consensus        97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~~---~~~~~~Y~~  172 (260)
T 3un1_A           97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSITTSLVDQPMV---GMPSALASL  172 (260)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCTTTTSCBT---TCCCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhccCCC---CCccHHHHH
Confidence            999999999753                   222    334444456666 68999999977654322   234568888


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       173 sKaa~~~l~~  182 (260)
T 3un1_A          173 TKGGLNAVTR  182 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8988777633

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.78  E-value=6.1e-18  Score=125.20  Aligned_cols=128  Identities=13%  Similarity=0.102  Sum_probs=96.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        31 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN-----KHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC-----HHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322 111  13478999999999999888875     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||+||...                   +.+    ++.+++.+.+.+ .++||++||..++...     .....
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~~  179 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHVSV-----PFLLA  179 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CCCH-----HHHHH
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEechhhcCCC-----CCchh
Confidence              6899999999753                   112    444555666666 6899999998776532     23567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       180 Y~~sK~a~~~l~  191 (272)
T 1yb1_A          180 YCSSKFAAVGFH  191 (272)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            899998877663

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.78  E-value=1.3e-17  Score=122.36  Aligned_cols=125  Identities=11%  Similarity=0.106  Sum_probs=93.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.     ++.+..++..  . .++.+|++|++++.++++       +
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP-----EGKEVAEAIG--G-AFFQVDLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-----THHHHHHHHT--C-EEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh-----hHHHHHHHhh--C-CEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999983     3322222222  3 788999999999888775       6


Q ss_pred             cCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..++    +.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  151 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLFAE-----QENAAYNA  151 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSBC-----TTBHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccccccCCC-----CCChhHHH
Confidence            899999999753                   2223    33444555555 6899999998776432     23568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       152 sK~a~~~~~  160 (256)
T 2d1y_A          152 SKGGLVNLT  160 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998776663

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.78  E-value=5.9e-18  Score=126.85  Aligned_cols=133  Identities=20%  Similarity=0.146  Sum_probs=96.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... .+..+.+......++.++.+|++|++++.++++       +
T Consensus        41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPREL-SSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGG-HHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999983321 111112222222578999999999999888765       5


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHH----HHHHHHHhcCCccEEEecccccc-ccCCCccCCccchhh
Q 040431           77 VDVVISTVGHTL-------------------LADQVK----IIAAIKEAEGASRGTLRTQKGKM-SSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~-~~~~~~~~~~~~~~~  132 (157)
                      +|++|||||...                   ..++..    +++.+.+.+ .++||++||..+. ...     .....|.
T Consensus       120 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~~~~~~~-----~~~~~Y~  193 (293)
T 3rih_A          120 LDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSITGPVTGY-----PGWSHYG  193 (293)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSBTTTBBC-----TTCHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChhhccCCC-----CCCHHHH
Confidence            899999999754                   223333    444446666 6899999997764 221     3456899


Q ss_pred             HhHhhhhHHHH
Q 040431          133 MTELIDQKIFI  143 (157)
Q Consensus       133 ~~~~~~~~~~~  143 (157)
                      .+|.+.+.+..
T Consensus       194 asKaa~~~l~~  204 (293)
T 3rih_A          194 ASKAAQLGFMR  204 (293)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998776633

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.78  E-value=8.2e-18  Score=122.38  Aligned_cols=129  Identities=13%  Similarity=0.112  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEe-cCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV-RESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~-r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++ |+     ++..+.+ ++.  ...++.++.+|++|++++.++++    
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPA-----STSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTT-----CSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcC-----HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999984 44     3332221 111  24568999999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+|||+||...                   +.+    ++.+++.+.+.+ .++||++||..+....     ....
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~  153 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKIINITSIAGIIGN-----AGQA  153 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC--------------CH
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhccCC-----CCCc
Confidence               7899999999753                   222    344455555566 6899999997543322     2356


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       154 ~Y~~sK~a~~~~~~  167 (247)
T 2hq1_A          154 NYAASKAGLIGFTK  167 (247)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHH
Confidence            89999987766633

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.78  E-value=1e-17  Score=123.17  Aligned_cols=128  Identities=13%  Similarity=0.142  Sum_probs=96.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRK-----QENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL   88 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     4443322 221  13468889999999999888776     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|+||||||...                    ..+    .+.+++.+.+.+ .++||++||..++...     ....
T Consensus        89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  162 (260)
T 2zat_A           89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG-GGSVLIVSSVGAYHPF-----PNLG  162 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSCC-----TTBH
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEechhhcCCC-----CCch
Confidence              7999999999631                    122    344555556666 6899999998887542     2356


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       163 ~Y~~sK~a~~~~~  175 (260)
T 2zat_A          163 PYNVSKTALLGLT  175 (260)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            8899988776663

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.78  E-value=5.9e-18  Score=123.76  Aligned_cols=128  Identities=11%  Similarity=0.046  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+......++.++.+|++|++++.++++       +
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDIN-----AEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGG   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            5799999999999999999999999999999988     555544333335678999999999999988876       6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..+    ++.+++.+.+.+..++||++||..++...     .....|..
T Consensus        81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~a  155 (247)
T 3rwb_A           81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT-----PNMAAYVA  155 (247)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC-----TTCHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC-----CCchhhHH
Confidence            999999999754                   222    44455557666534799999998776543     23568889


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       156 sKaa~~~~  163 (247)
T 3rwb_A          156 AKGGVIGF  163 (247)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876655

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.78  E-value=7.9e-18  Score=121.63  Aligned_cols=130  Identities=12%  Similarity=0.145  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC----cCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ----VDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~----~d~   79 (157)
                      |++++||||+|+||++++++|+++|++|++++|+     +++.+.+.+....++.++.+|++|++++.++++.    .|+
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~   75 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRS-----ESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPST   75 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESC-----HHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence            4689999999999999999999999999999998     6565544443356789999999999999999874    399


Q ss_pred             EEEcCCCcc-------------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCccchhhHhHhhh
Q 040431           80 VISTVGHTL-------------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~-------------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~  138 (157)
                      ||||||...                   +.++..+++++....  ...+||++||..++...     .....|..+|.+.
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~-----~~~~~Y~asKaa~  150 (230)
T 3guy_A           76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPK-----AQESTYCAVKWAV  150 (230)
T ss_dssp             EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCC-----TTCHHHHHHHHHH
T ss_pred             EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCC-----CCCchhHHHHHHH
Confidence            999999753                   223444444443321  02389999998777542     3456899999988


Q ss_pred             hHHHH
Q 040431          139 QKIFI  143 (157)
Q Consensus       139 ~~~~~  143 (157)
                      +.+..
T Consensus       151 ~~~~~  155 (230)
T 3guy_A          151 KGLIE  155 (230)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77633

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.78  E-value=1.2e-17  Score=121.86  Aligned_cols=128  Identities=13%  Similarity=0.102  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.+.  .++.++.+|++|++++.++++   ++|+|
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDIN-----ESKLQELEKY--PGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHGGGGGS--TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHhc--cCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            5789999999999999999999999999999998     4444433322  268899999999999887754   68999


Q ss_pred             EEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      |||||...                   ..+    .+.+++.+.+.+ .++||++||..++...+    .....|..+|.+
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~----~~~~~Y~~sK~a  153 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSVKGV----VNRCVYSTTKAA  153 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTBCC----TTBHHHHHHHHH
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechHhCcCCC----CCCccHHHHHHH
Confidence            99999753                   112    344455555666 68999999987765322    145689999988


Q ss_pred             hhHHHH
Q 040431          138 DQKIFI  143 (157)
Q Consensus       138 ~~~~~~  143 (157)
                      .+.+..
T Consensus       154 ~~~~~~  159 (246)
T 2ag5_A          154 VIGLTK  159 (246)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776633

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.78  E-value=1.1e-17  Score=123.74  Aligned_cols=128  Identities=14%  Similarity=0.128  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh---cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF---KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~---~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.   ...++.++.+|++|++++.++++    
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   95 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN-----LEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   95 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     44433221 11   24568889999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEecccc-ccccCCCccCCcc
Q 040431           76 ---QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKG-KMSSLSSEMTTTL  128 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~-~~~~~~~~~~~~~  128 (157)
                         ++|+||||||...                   +.++    +.+++.+.+.+ .++||++||.. .....     ...
T Consensus        96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~~-----~~~  169 (267)
T 1vl8_A           96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEEVTM-----PNI  169 (267)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTCCCS-----SSC
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCcchhccCC-----CCC
Confidence               6899999999753                   2223    33444455555 68999999976 43221     235


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       170 ~~Y~asK~a~~~~~  183 (267)
T 1vl8_A          170 SAYAASKGGVASLT  183 (267)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            68999998877663

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.77  E-value=8.4e-18  Score=122.21  Aligned_cols=128  Identities=11%  Similarity=0.163  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .++++||||+|+||++++++|++.|+       +|++++|+     +++.+.+. +.  ...++.++.+|++|++++.++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~   76 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT-----AADLEKISLECRAEGALTDTITADISDMADVRRL   76 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC-----HHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCC-----HHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHH
Confidence            57899999999999999999999999       89999987     44443322 22  134688999999999999888


Q ss_pred             hc-------CcCEEEEcCCCcc-------------------hHHHHH----HHHHHHHhcCCccEEEeccccccccCCCc
Q 040431           74 IK-------QVDVVISTVGHTL-------------------LADQVK----IIAAIKEAEGASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        74 ~~-------~~d~vv~~a~~~~-------------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~  123 (157)
                      ++       ++|+|||+||...                   +.++..    +++.+.+.+ .++||++||..++...   
T Consensus        77 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~---  152 (244)
T 2bd0_A           77 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATKAF---  152 (244)
T ss_dssp             HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC---
T ss_pred             HHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEEecchhcCCC---
Confidence            76       6999999999743                   223333    444445555 6899999998877532   


Q ss_pred             cCCccchhhHhHhhhhHHH
Q 040431          124 MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (157)
                        .+...|..+|.+.+.+.
T Consensus       153 --~~~~~Y~~sK~a~~~~~  169 (244)
T 2bd0_A          153 --RHSSIYCMSKFGQRGLV  169 (244)
T ss_dssp             --TTCHHHHHHHHHHHHHH
T ss_pred             --CCCchhHHHHHHHHHHH
Confidence              34568999999877764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.77  E-value=1.5e-17  Score=122.06  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=96.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   76 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN-----DATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKT   76 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     4443322 121  13468899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+||||||...                   .    ..++.+++.+.+.+..++||++||..++...     .....
T Consensus        77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~  151 (256)
T 1geg_A           77 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN-----PELAV  151 (256)
T ss_dssp             TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----TTBHH
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC-----CCchh
Confidence              7999999999643                   1    1234455555554313699999998765432     23567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       152 Y~asK~a~~~~~  163 (256)
T 1geg_A          152 YSSSKFAVRGLT  163 (256)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            889988776663

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.77  E-value=1.4e-17  Score=122.28  Aligned_cols=127  Identities=14%  Similarity=0.115  Sum_probs=96.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+.     ++.+.+.+....++.++.+|++|++++.++++       +
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPN-----SGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGR   86 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT-----SSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc-----HhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            47899999999999999999999999999999984     33332222224578999999999999998886       7


Q ss_pred             cCEEEEcCCCcc-------------------------hHHHHHHHHHHHHh----------cCCccEEEeccccccccCC
Q 040431           77 VDVVISTVGHTL-------------------------LADQVKIIAAIKEA----------EGASRGTLRTQKGKMSSLS  121 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~----------~~~~~~v~~Ss~~~~~~~~  121 (157)
                      +|+||||||...                         ..++..+++++...          + .++||++||..++... 
T Consensus        87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-  164 (265)
T 2o23_A           87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ-RGVIINTASVAAFEGQ-  164 (265)
T ss_dssp             CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC-CEEEEEECCTHHHHCC-
T ss_pred             CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCC-CcEEEEeCChhhcCCC-
Confidence            999999999641                         22344455554433          4 5789999998876542 


Q ss_pred             CccCCccchhhHhHhhhhHH
Q 040431          122 SEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~  141 (157)
                          .....|..+|.+.+.+
T Consensus       165 ----~~~~~Y~~sK~a~~~~  180 (265)
T 2o23_A          165 ----VGQAAYSASKGGIVGM  180 (265)
T ss_dssp             ----TTCHHHHHHHHHHHHH
T ss_pred             ----CCCchhHHHHHHHHHH
Confidence                2356788999877665

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.77  E-value=7.6e-19  Score=140.37  Aligned_cols=137  Identities=14%  Similarity=0.193  Sum_probs=104.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----h--------hhhcCCCeEEEEccCCChHHH
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----L--------DHFKNLGVNLVIGDVLNHESL   70 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~--------~~~~~~~v~~~~~D~~~~~~~   70 (157)
                      .+|+|+|||||||||++|+++|.+.|++|++++|+....  .....    +        ......++.++.+|+.|++.+
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEE--IAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHH--HHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChH--HHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            367999999999999999999998899999999984311  01111    1        112346899999999998877


Q ss_pred             HHHhcCcCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC----------Cc----c
Q 040431           71 VKAIKQVDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS----------SE----M  124 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~----------~~----~  124 (157)
                      . +..++|+|||+|+...            +.++.++++++.+ + .++|||+||.++ +...          ..    .
T Consensus       227 ~-~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~-~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~  302 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVSTISV-GTYFDIDTEDVTFSEADVYKG  302 (508)
T ss_dssp             C-CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-T-TCEEEEEEESCT-TSEECTTCSCCEECTTCSCSS
T ss_pred             C-CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-C-CCcEEEeCChhh-ccCCccCCcCccccccccccc
Confidence            7 6778999999999753            6678999999998 5 689999999888 2210          00    0


Q ss_pred             CCccchhhHhHhhhhHHHHHH
Q 040431          125 TTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      ..+...|..+|...|.+...+
T Consensus       303 ~~~~~~Y~~sK~~~E~~~~~~  323 (508)
T 4f6l_B          303 QLLTSPYTRSKFYSELKVLEA  323 (508)
T ss_dssp             BCCCSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHH
Confidence            236789999999999886654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.77  E-value=1.8e-17  Score=121.40  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +|+++||||+++||+++|+.|++.|++|++++|+     +++.+.+.+. ..++.++++|++|+++++++++       +
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~-----~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~   75 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDID-----EKRSADFAKE-RPNLFYFHGDVADPLTLKKFVEYAMEKLQR   75 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHTT-CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHh-cCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999999998     5555444333 3568899999999999988875       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++.+++.+.+.+  +++|++||..+....+     ....|..
T Consensus        76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--G~IInisS~~~~~~~~-----~~~~Y~a  148 (247)
T 3ged_A           76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK--GRIINIASTRAFQSEP-----DSEAYAS  148 (247)
T ss_dssp             CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGTSCCT-----TCHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CcEEEEeecccccCCC-----CCHHHHH
Confidence            999999999865                       223566667776654  7899999987765432     2457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|..-..+
T Consensus       149 sKaal~~l  156 (247)
T 3ged_A          149 AKGGIVAL  156 (247)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88865555

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.77  E-value=1.9e-17  Score=122.66  Aligned_cols=128  Identities=15%  Similarity=0.225  Sum_probs=96.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHh------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAI------   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~------   74 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.+++      
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN-----EKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322 221  1346889999999999988877      


Q ss_pred             --cCcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           75 --KQVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        75 --~~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        .++|++|||||...                   ..+    .+.+++.+.+.+ .++||++||..++...     ....
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~  169 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFSAL-----PSVS  169 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTSCC-----TTCH
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHhhcCCC-----CCcc
Confidence              46899999999753                   222    334444555665 6899999998887543     2356


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       170 ~Y~asK~a~~~~~  182 (273)
T 1ae1_A          170 LYSASKGAINQMT  182 (273)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            8999988776663

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.77  E-value=1.2e-17  Score=122.64  Aligned_cols=128  Identities=11%  Similarity=0.065  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK-----SEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     44443222 11  24578999999999999888876     


Q ss_pred             --CcCEEEEcCCCcc------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 --QVDVVISTVGHTL------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 --~~d~vv~~a~~~~------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                        ++|++|||||...                  ..+    .+.+++.+.+.+ .++||++||..++...     .....|
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y  160 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG-GGAILNISSMAGENTN-----VRMASY  160 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTCCC-----TTCHHH
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHHcCCC-----CCchHH
Confidence              6899999999753                  222    444555556666 6899999998876542     345689


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       161 ~asKaa~~~~~  171 (256)
T 3gaf_A          161 GSSKAAVNHLT  171 (256)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877663

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.77  E-value=4.8e-18  Score=124.53  Aligned_cols=127  Identities=15%  Similarity=0.082  Sum_probs=97.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.+....++.++.+|++|++++.++++       +
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN-----EAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999987     544443322224578899999999999888775       4


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                       ...++.+++.+.+.+  ++||++||..++...     .....|..
T Consensus        81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-----~~~~~Y~~  153 (253)
T 1hxh_A           81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLPI-----EQYAGYSA  153 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcCCC-----CCCccHHH
Confidence            799999999753                       113455566666554  799999998877532     23568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       154 sK~a~~~~~  162 (253)
T 1hxh_A          154 SKAAVSALT  162 (253)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998776663

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.77  E-value=1.2e-17  Score=121.74  Aligned_cols=128  Identities=11%  Similarity=0.071  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +.++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.  ...++.++.+|++|++++.++++    
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATS-----QASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999998     44443322 11  24578999999999999988875    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+||||||...                   ..+    .+.+++.+.+.+ .++||++||..++...     ....
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  152 (247)
T 3lyl_A           79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR-WGRIISIGSVVGSAGN-----PGQT  152 (247)
T ss_dssp             TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----TTCH
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhccCC-----CCcH
Confidence               4899999999863                   222    344455555665 6799999998776543     2356


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       153 ~Y~~sK~a~~~~  164 (247)
T 3lyl_A          153 NYCAAKAGVIGF  164 (247)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            899999876666

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.77  E-value=3.4e-18  Score=128.00  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh----HhhhhcCCCeEEEEccCCCh-HHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ----LLDHFKNLGVNLVIGDVLNH-ESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~----~~~~~~~~~v~~~~~D~~~~-~~~~~~~~---   75 (157)
                      .++++||||+|+||.+++++|+++|++|++++|+     .++.+    .+......++.++.+|++|+ +++.++++   
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~   86 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRD-----VTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIK   86 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     44332    22233345789999999998 77776654   


Q ss_pred             ----CcCEEEEcCCCc
Q 040431           76 ----QVDVVISTVGHT   87 (157)
Q Consensus        76 ----~~d~vv~~a~~~   87 (157)
                          ++|+||||||..
T Consensus        87 ~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           87 THFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHSSCCEEEECCCCC
T ss_pred             HhCCCCCEEEECCccc
Confidence                799999999975

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.77  E-value=1.3e-17  Score=123.16  Aligned_cols=120  Identities=13%  Similarity=0.072  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+...             ..++.++.+|++|++++.++++       +
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   74 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIFKEYGS   74 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999998432             2457889999999999988876       6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  148 (264)
T 2dtx_A           75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR-DPSIVNISSVQASIIT-----KNASAYVT  148 (264)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCchhccCC-----CCchhHHH
Confidence            999999999743                   222    334444444555 6899999998876532     34568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       149 sK~a~~~~~  157 (264)
T 2dtx_A          149 SKHAVIGLT  157 (264)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999877663

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.77  E-value=8.3e-18  Score=124.05  Aligned_cols=130  Identities=9%  Similarity=0.055  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh----cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF----KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~----~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+ ++.    ...++.++.+|++|++++.++++   
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN-----LEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV   81 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     4333221 111    13468899999999999988876   


Q ss_pred             ----CcCEEEEcCCCcc---------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 ----QVDVVISTVGHTL---------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 ----~~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                          ++|+||||||...               ...++.+++++.+.+  ..++||++||..++...     .....|..+
T Consensus        82 ~~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~~s  156 (267)
T 2gdz_A           82 DHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV-----AQQPVYCAS  156 (267)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----TTCHHHHHH
T ss_pred             HHcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC-----CCCchHHHH
Confidence                4799999999753               223566677776643  14789999998877542     234579999


Q ss_pred             HhhhhHHHH
Q 040431          135 ELIDQKIFI  143 (157)
Q Consensus       135 ~~~~~~~~~  143 (157)
                      |.+.+.+..
T Consensus       157 K~a~~~~~~  165 (267)
T 2gdz_A          157 KHGIVGFTR  165 (267)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987776643

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.77  E-value=1.9e-17  Score=122.88  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=98.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh----cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF----KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~----~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++.+.+. +.    ....+.++.+|++|++++.++++   
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~  106 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGLKVVGCART-----VGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR  106 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC-----hHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     44443222 11    12357889999999999888876   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCC--ccEEEeccccccccCCCccCC
Q 040431           76 ----QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGA--SRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~--~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                          ++|+|||+||...                   +.+    ++.+++.+.+.+ .  ++||++||..++...+   ..
T Consensus       107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~-~~~g~iv~isS~~~~~~~~---~~  182 (279)
T 1xg5_A          107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERN-VDDGHIININSMSGHRVLP---LS  182 (279)
T ss_dssp             HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCSCEEEEECCGGGTSCCS---CG
T ss_pred             HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCCceEEEEcChhhcccCC---CC
Confidence                6999999999653                   112    677888888776 4  7999999988764221   23


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+.+.+
T Consensus       183 ~~~~Y~~sK~a~~~~  197 (279)
T 1xg5_A          183 VTHFYSATKYAVTAL  197 (279)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHH
Confidence            456799999887665

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.77  E-value=1.3e-17  Score=122.40  Aligned_cols=128  Identities=10%  Similarity=0.052  Sum_probs=91.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....     +........++.++.+|++|++++.++++       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAG-----EEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGH   81 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH-----HHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999985432     22221124568999999999999988876       7


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHH----Hh-----cCCccEEEeccccccccCCCcc
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIK----EA-----EGASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~----~~-----~~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                      +|++|||||...                       ..++..+++++.    +.     +..++||++||..++...+   
T Consensus        82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~---  158 (257)
T 3tpc_A           82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQI---  158 (257)
T ss_dssp             CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT---
T ss_pred             CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCC---
Confidence            999999999752                       223444444443    32     1157899999988775432   


Q ss_pred             CCccchhhHhHhhhhHH
Q 040431          125 TTTLDMLEMTELIDQKI  141 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~  141 (157)
                        ....|..+|.+.+.+
T Consensus       159 --~~~~Y~asKaa~~~~  173 (257)
T 3tpc_A          159 --GQAAYAASKGGVAAL  173 (257)
T ss_dssp             --TCHHHHHHHHHHHHH
T ss_pred             --CCcchHHHHHHHHHH
Confidence              356899999877666

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.77  E-value=2.1e-17  Score=121.37  Aligned_cols=128  Identities=14%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCch--hhHh-hhhc--CCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK--SQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~--~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++  .+.+ ++..  ..++.++.+|++|++++.++++   
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   76 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLP-----QQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAA   76 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECG-----GGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----cchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     433  3222 2221  3468899999999999888876   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hH----HHHHHHHHHHHhcCC-ccEEEeccccccccCCCccCCc
Q 040431           76 ----QVDVVISTVGHTL-------------------LA----DQVKIIAAIKEAEGA-SRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~----~~~~l~~~~~~~~~~-~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                          ++|++|||||...                   +.    ..+.+++.+.+.+ . ++||++||..++...     ..
T Consensus        77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~-----~~  150 (258)
T 3a28_C           77 EKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELG-VKGKIINAASIAAIQGF-----PI  150 (258)
T ss_dssp             HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCCEEEEECCGGGTSCC-----TT
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCcEEEEECcchhccCC-----CC
Confidence                6999999999753                   11    2444555555555 5 799999998776532     23


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       151 ~~~Y~~sK~a~~~~~  165 (258)
T 3a28_C          151 LSAYSTTKFAVRGLT  165 (258)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHH
Confidence            568899988776663

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.77  E-value=1.4e-17  Score=123.73  Aligned_cols=128  Identities=11%  Similarity=0.214  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcC-CCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKN-LGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~-~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++... .++.++.+|++|++++.++++      
T Consensus        29 ~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           29 GRIALVTGGSRGIGQMIAQGLLEAGARVFICARD-----AEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELS  103 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999988     4443322 22211 268889999999999888876      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCC----ccEEEeccccccccCCCccCCc
Q 040431           76 -QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGA----SRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~----~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                       ++|+||||||...                   ..+    ++.+++.+.+.+ .    ++||++||..++...+.     
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~~~~~g~iV~isS~~~~~~~~~-----  177 (276)
T 2b4q_A          104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSA-SAENPARVINIGSVAGISAMGE-----  177 (276)
T ss_dssp             SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-CSSSCEEEEEECCGGGTCCCCC-----
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-CCCCCCEEEEECCHHHcCCCCC-----
Confidence             6899999999643                   122    355566666665 4    79999999887754322     


Q ss_pred             cc-hhhHhHhhhhHHH
Q 040431          128 LD-MLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~-~~~~~~~~~~~~~  142 (157)
                      .. .|..+|.+.+.+.
T Consensus       178 ~~~~Y~asK~a~~~~~  193 (276)
T 2b4q_A          178 QAYAYGPSKAALHQLS  193 (276)
T ss_dssp             SCTTHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHH
Confidence            23 7889998877663

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.77  E-value=3e-17  Score=119.28  Aligned_cols=130  Identities=16%  Similarity=0.112  Sum_probs=96.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.... .++.++.+|++|++++.++++   ++|+|
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT-----QADLDSLVREC-PGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHS-TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHc-CCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence            4689999999999999999999999999999988     44444332221 256788999999999999986   58999


Q ss_pred             EEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      ||+||...                   +.++    +.+++.+.+.+..++||++||..++...     .+...|..+|.+
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----~~~~~Y~~sK~a  155 (244)
T 3d3w_A           81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV-----TNHSVYCSTKGA  155 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-----TTBHHHHHHHHH
T ss_pred             EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC-----CCCchHHHHHHH
Confidence            99999753                   2223    3334444444314789999998776532     345689999998


Q ss_pred             hhHHHHH
Q 040431          138 DQKIFIY  144 (157)
Q Consensus       138 ~~~~~~~  144 (157)
                      .+.+...
T Consensus       156 ~~~~~~~  162 (244)
T 3d3w_A          156 LDMLTKV  162 (244)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777443

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.77  E-value=2e-17  Score=121.92  Aligned_cols=125  Identities=14%  Similarity=0.138  Sum_probs=95.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchh-hHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKS-QLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.     ++. +.+.+   .++.++.+|++|++++.++++       
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLEHGHRVIISYRTE-----HASVTELRQ---AGAVALYGDFSCETGIMAFIDLLKTQTS   98 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC-----CHHHHHHHH---HTCEEEECCTTSHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHHh---cCCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999984     332 22222   247899999999999988875       


Q ss_pred             CcCEEEEcCCCcc------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           76 QVDVVISTVGHTL------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        76 ~~d~vv~~a~~~~------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      ++|++|||||...                  +.+    ++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  172 (260)
T 3gem_A           99 SLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE-VADIVHISDDVTRKGS-----SKHIAYCA  172 (260)
T ss_dssp             CCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGTCC-----SSCHHHHH
T ss_pred             CCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcCCC-----CCcHhHHH
Confidence            5899999999753                  222    444455555555 6899999998876543     24568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       173 sKaa~~~l~  181 (260)
T 3gem_A          173 TKAGLESLT  181 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999877663

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.77  E-value=1.5e-17  Score=122.46  Aligned_cols=128  Identities=10%  Similarity=0.071  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLGARVVLTARD-----VEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999998     54443322 11  23568999999999999988875     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|+||||||...                    +.+    .+.+++.+.+.+ .++||++||..++...     ....
T Consensus       104 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  177 (262)
T 3rkr_A          104 HGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK-RGHIINISSLAGKNPV-----ADGA  177 (262)
T ss_dssp             HSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCEEEEECSSCSSCCC-----TTCH
T ss_pred             cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CceEEEEechhhcCCC-----CCCc
Confidence              4899999999821                    222    444555556666 6899999998876532     3456


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       178 ~Y~asKaa~~~l~  190 (262)
T 3rkr_A          178 AYTASKWGLNGLM  190 (262)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            8999998776663

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.77  E-value=1.4e-17  Score=123.49  Aligned_cols=129  Identities=17%  Similarity=0.071  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|++.|++|++++|+     .++++.+......++.++.+|++|++++.++++       +
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRR-----LDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998     555554433334678999999999999998876       7


Q ss_pred             cCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchh
Q 040431           77 VDVVISTVGHTL--------------------LAD----QVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      +|++|||||...                    +.+    ++.+++.+.+.+ ..++||++||..++...     .....|
T Consensus       103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-----~~~~~Y  177 (272)
T 4dyv_A          103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPR-----PYSAPY  177 (272)
T ss_dssp             CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCC-----TTCHHH
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCC-----CCchHH
Confidence            999999999742                    122    445555665543 13699999998776532     345689


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       178 ~asKaa~~~l~  188 (272)
T 4dyv_A          178 TATKHAITGLT  188 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877663

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.77  E-value=2.6e-17  Score=120.41  Aligned_cols=122  Identities=11%  Similarity=0.106  Sum_probs=94.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+...         .   ..++.++.+|++|++++.++++       +
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   74 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------E---QYPFATEVMDVADAAQVAQVCQRLLAETER   74 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------S---CCSSEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------h---cCCceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998431         1   1137889999999999988876       6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..+    .+.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  148 (250)
T 2fwm_X           75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVASDAAHTPR-----IGMSAYGA  148 (250)
T ss_dssp             CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCC-----TTCHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECchhhCCCC-----CCCchHHH
Confidence            899999999743                   222    344445556666 6899999998876532     23567999


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       149 sK~a~~~~~~  158 (250)
T 2fwm_X          149 SKAALKSLAL  158 (250)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987766633

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.77  E-value=6e-18  Score=124.96  Aligned_cols=128  Identities=16%  Similarity=0.095  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.    +.+....++.++.+|++|++++.++++    
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   94 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGARLVLSGRD-----VSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE   94 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     444332    222235679999999999999888775    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++|||||...                   +.+    .+.+++.+.+.+..++||++||..++...     ....
T Consensus        95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~  169 (266)
T 4egf_A           95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL-----PDHY  169 (266)
T ss_dssp             HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----TTCH
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC-----CCCh
Confidence               6999999999764                   122    34455555555423699999998877542     2356


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       170 ~Y~asK~a~~~l  181 (266)
T 4egf_A          170 AYCTSKAGLVMA  181 (266)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            799999877666

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.77  E-value=3e-17  Score=121.71  Aligned_cols=127  Identities=15%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcC-CCeEEEEccCCChHHHHHHhcC------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKN-LGVNLVIGDVLNHESLVKAIKQ------   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~-~~v~~~~~D~~~~~~~~~~~~~------   76 (157)
                      ++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +... .++.++.+|++|++++.++++.      
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRR-----EERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            689999999999999999999999999999998     54444332 2211 3688999999999999988863      


Q ss_pred             -cCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCc-cEEEeccccccccCCCccCCccch
Q 040431           77 -VDVVISTVGHTL------------------------LADQVKIIAAIKEAEGAS-RGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        77 -~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       +|++|||||...                        ...++.+++.+.+.+ .+ +||++||..++...     .....
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~~IV~isS~~~~~~~-----~~~~~  170 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG-AGASIVNLGSVAGKWPY-----PGSHV  170 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGTSCC-----TTCHH
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchhccCC-----CCCch
Confidence             699999999742                        112555666677776 67 99999998776432     23467


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       171 Y~asKaa~~~l~  182 (272)
T 2nwq_A          171 YGGTKAFVEQFS  182 (272)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887773

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.77  E-value=2.3e-17  Score=121.20  Aligned_cols=128  Identities=15%  Similarity=0.064  Sum_probs=95.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRT-----KEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999998     54444332 22  23468899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   ..+    ++.+++.+.+.+..++||++||..++...     .....
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~  155 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG-----PGVIH  155 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC-----TTCHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC-----CCcHH
Confidence              6899999999643                   222    33444444343325799999998776542     23567


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       156 Y~asKaa~~~l  166 (257)
T 3imf_A          156 SAAAKAGVLAM  166 (257)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888876655

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.77  E-value=3e-17  Score=119.98  Aligned_cols=126  Identities=15%  Similarity=0.191  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGAAVAIAARR-----VEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     44443322 22  13468899999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   ..+    .+.+++.+.+.+  ++||++||..++...     .....
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-----~~~~~  154 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSIAGRVNV-----RNAAV  154 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTCCC-----TTCHH
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccHHhcCCC-----CCCcH
Confidence              6999999999753                   222    333444444443  799999998776532     23567


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       155 Y~asK~a~~~~  165 (247)
T 2jah_A          155 YQATKFGVNAF  165 (247)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888876555

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.77  E-value=7.9e-18  Score=123.82  Aligned_cols=131  Identities=17%  Similarity=0.157  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||++++++|++.|++|++++|+..    ...+.+.+   ....++.++.+|++|++++.++++     
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT----TAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCCh----HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999988732    22222221   223578999999999999998876     


Q ss_pred             --CcCEEEEcCCC--cc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 --QVDVVISTVGH--TL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 --~~d~vv~~a~~--~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                        ++|+||||||.  ..                   +.+    .+.+++.+.+.+ .++||++||.+.+...+   ..+.
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~~~~---~~~~  158 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGFQGADSAPG---WIYR  158 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTTGGGCCC---CTTC
T ss_pred             hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEeechhcccCC---CCCC
Confidence              78999999993  21                   222    344444456776 68999999975543221   2345


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       159 ~~Y~asKaa~~~~~  172 (264)
T 3i4f_A          159 SAFAAAKVGLVSLT  172 (264)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHH
Confidence            78999998876663

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.76  E-value=6.1e-18  Score=125.02  Aligned_cols=130  Identities=20%  Similarity=0.113  Sum_probs=96.8

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhh--hcCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDH--FKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~--~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      ++++++||||+|+||++++++|++.|++|++++++.    .+..+. ..+  ....++.++.+|++|++++.++++    
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER----NDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA   99 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSC----HHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCc----hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999988552    222221 111  124578999999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+||||||...                   +    ...+.+++.+.+.+ .++||++||..++...     ....
T Consensus       100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  173 (269)
T 3gk3_A          100 DFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR-FGRIVNIGSVNGSRGA-----FGQA  173 (269)
T ss_dssp             HHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCC-----TTBH
T ss_pred             HcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEeCChhhccCC-----CCcc
Confidence               6999999999763                   1    22444555556666 6899999998776543     2456


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       174 ~Y~asKaa~~~~~  186 (269)
T 3gk3_A          174 NYASAKAGIHGFT  186 (269)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            8999998776663

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.76  E-value=1.6e-17  Score=123.34  Aligned_cols=128  Identities=16%  Similarity=0.117  Sum_probs=95.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARG-----EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     4443322 222  13468899999999999888876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHH------HHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAA------IKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~------~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                        ++|+||||||...                   +.++..++++      +.+.+ .++||++||..++...     ...
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~  170 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQGV-----VHA  170 (277)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHT-EEEEEEECCGGGTSCC-----TTC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcC-CeEEEEECccccccCC-----CCC
Confidence              6899999999743                   2233344444      44445 6899999998765432     235


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       171 ~~Y~asK~a~~~~~  184 (277)
T 2rhc_B          171 APYSASKHGVVGFT  184 (277)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            67899998776663

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.76  E-value=4.7e-17  Score=120.89  Aligned_cols=131  Identities=12%  Similarity=0.072  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARH-----SDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESS-----GGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     43333221 21  23578899999999999998876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   +.+    ++.+++.+.+.+..++||++||..++....   ......
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~---~~~~~~  183 (276)
T 3r1i_A          107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI---PQQVSH  183 (276)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC---SSCCHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC---CCCcch
Confidence              7999999999864                   122    444555556654237899999987654321   124568


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       184 Y~asKaa~~~l~  195 (276)
T 3r1i_A          184 YCTSKAAVVHLT  195 (276)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998876663

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.76  E-value=1.2e-17  Score=121.32  Aligned_cols=127  Identities=13%  Similarity=0.080  Sum_probs=95.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEE-ecCCCCCCCchhhHh-hhh--cCCCeEE-EEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVL-VRESTISGPSKSQLL-DHF--KNLGVNL-VIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~-~r~~~~~~~~~~~~~-~~~--~~~~v~~-~~~D~~~~~~~~~~~~---   75 (157)
                      +++++||||+|+||++++++|++.|++|+++ .|+     +++.+.+ ++.  ...++.. +.+|++|++++.++++   
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   75 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQN-----REKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAA   75 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSC-----HHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC-----HHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999998 676     4333322 111  1335666 8999999999888864   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+|||+||...                   +.+    ++.+++.+.+.+ .++||++||..++...     ...
T Consensus        76 ~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~  149 (245)
T 2ph3_A           76 EVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSVVGILGN-----PGQ  149 (245)
T ss_dssp             HHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----SSB
T ss_pred             HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeChhhccCC-----CCC
Confidence                6999999999643                   122    566677777776 7899999998765432     235


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       150 ~~Y~~sK~a~~~~  162 (245)
T 2ph3_A          150 ANYVASKAGLIGF  162 (245)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHH
Confidence            6788888876665

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.76  E-value=1.8e-17  Score=121.92  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHh------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAI------   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~------   74 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ .+.  ...++.++.+|++|++++.+++      
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN-----EYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999997     4433322 111  1346889999999999988887      


Q ss_pred             --cCcCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccc
Q 040431           75 --KQVDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        75 --~~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        .++|+|||+||...                   +.++.++++++    .+.+ .++||++||..++...     ....
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~  162 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVVSA-----SVGS  162 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC---------------CC
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccchhccCC-----CCCc
Confidence              46899999999743                   22334444444    5666 7899999998776532     2356


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       163 ~Y~~sK~a~~~~~~  176 (266)
T 1xq1_A          163 IYSATKGALNQLAR  176 (266)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            89999988776643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.76  E-value=3e-17  Score=123.27  Aligned_cols=129  Identities=15%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVD-----QPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999998     44443322 22  24578999999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+||||||...                   +.+    ++.+++.+.+.+..++||++||..++...     .....
T Consensus       106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~  180 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN-----AGLGT  180 (301)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC-----TTBHH
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC-----CCchH
Confidence              6899999999753                   222    33444445555424699999998877542     34568


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       181 Y~asKaa~~~~~  192 (301)
T 3tjr_A          181 YGVAKYGVVGLA  192 (301)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999776663

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.76  E-value=4.1e-18  Score=125.38  Aligned_cols=113  Identities=13%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHh-CCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      |+++++++||||+|+||++++++|++ .|++|++++|+     .++.+.. ++.  ...++.++.+|++|++++.++++ 
T Consensus         1 ~~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~   75 (276)
T 1wma_A            1 SSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-----VTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDF   75 (276)
T ss_dssp             -CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-----HHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCC-----hHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHH
Confidence            44578999999999999999999999 99999999998     4333321 222  13468899999999999988876 


Q ss_pred             ------CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccc
Q 040431           76 ------QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMS  118 (157)
Q Consensus        76 ------~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~  118 (157)
                            ++|+|||+||...                   +.++..+++++.... ..++||++||..++.
T Consensus        76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~  144 (276)
T 1wma_A           76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVR  144 (276)
T ss_dssp             HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH
T ss_pred             HHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhc
Confidence                  7999999999752                   334566777776652 025899999987763

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.76  E-value=1.7e-17  Score=123.01  Aligned_cols=135  Identities=13%  Similarity=0.095  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+.... ....+.+.. ...++.++.+|++|++++.++++       +
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPAD-EKAEHLQKT-YGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCH-HHHHHHHHH-HCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHh-cCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999984321 111111111 24568899999999999988876       3


Q ss_pred             cCEEEEcCCCcch---------------------HH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           77 VDVVISTVGHTLL---------------------AD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~~---------------------~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      +|+|||+||....                     .+    ++.+++.+.+.+ .++||++||..++..   ....+...|
T Consensus       112 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~---~~~~~~~~Y  187 (279)
T 3ctm_A          112 IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSISGKIV---NIPQLQAPY  187 (279)
T ss_dssp             CSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCTTSCC------CCHHHH
T ss_pred             CCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchHhccC---CCCCCcccH
Confidence            8999999986421                     11    567888888776 789999999876542   112346789


Q ss_pred             hHhHhhhhHHHHH
Q 040431          132 EMTELIDQKIFIY  144 (157)
Q Consensus       132 ~~~~~~~~~~~~~  144 (157)
                      ..+|.+.+.+...
T Consensus       188 ~~sK~a~~~~~~~  200 (279)
T 3ctm_A          188 NTAKAACTHLAKS  200 (279)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988777433

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.76  E-value=1.1e-17  Score=123.94  Aligned_cols=128  Identities=14%  Similarity=0.122  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGARILINGTD-----PSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC-----HHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999887     4444322 222  23578899999999999998876     


Q ss_pred             --CcCEEEEcCCCcc-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   .    ..++.+++.+.+.+ .++||++||..++...     .....
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS~~~~~~~-----~~~~~  174 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGSLTSELAR-----ATVAP  174 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSBC-----TTCHH
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCCCC-----CCchh
Confidence              6899999999753                   1    22444566666666 6899999998776432     34567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       175 Y~asKaa~~~l~  186 (271)
T 4ibo_A          175 YTVAKGGIKMLT  186 (271)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998776663

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.76  E-value=2e-17  Score=120.75  Aligned_cols=124  Identities=18%  Similarity=0.128  Sum_probs=92.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     +++.+.+.+..  ++.++.+|++|++++.++++       +
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIE-----EGPLREAAEAV--GAHPVVMDVADPASVERGFAEALAHLGR   77 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTT--TCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHc--CCEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998     55444332221  37889999999999988775       4


Q ss_pred             cCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..++    +.+++.+.+.+ .++||++||.. ....     .....|..
T Consensus        78 id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~-~~~~-----~~~~~Y~a  150 (245)
T 1uls_A           78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRV-YLGN-----LGQANYAA  150 (245)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGG-GGCC-----TTCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEccch-hcCC-----CCchhHHH
Confidence            899999999743                   2223    33344444445 68999999987 3221     23457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       151 sK~a~~~~  158 (245)
T 1uls_A          151 SMAGVVGL  158 (245)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88866555

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.76  E-value=2.7e-17  Score=121.10  Aligned_cols=127  Identities=11%  Similarity=0.122  Sum_probs=95.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++..  ..++.++.+|++|++++.++++     
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN-----REALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4444322 2221  3468899999999999887765     


Q ss_pred             --CcCEEEEcCCCc-c-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHT-L-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~-~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|+||||||.. .                   ..+    .+.+++.+.+.+ .++||++||..++...     ....
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  155 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVKGP-----PNMA  155 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHSCC-----TTBH
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccCC-----CCCc
Confidence              689999999975 1                   122    344555555555 6899999998776532     2346


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       156 ~Y~asK~a~~~~  167 (262)
T 1zem_A          156 AYGTSKGAIIAL  167 (262)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            788888766555

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.76  E-value=3e-17  Score=121.87  Aligned_cols=131  Identities=11%  Similarity=0.110  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~~   77 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... .+..+.+.. ...++.++.+|++|++++.++++      ++
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           33 GRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGST-AAVQQRIIA-SGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTT-HHHHHHHHH-TTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHHHh-cCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            47899999999999999999999999999999985432 111112222 24578999999999999888876      68


Q ss_pred             CEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           78 DVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        78 d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      |++|||||...                       ...++.+++.+.+.+ .++||++||..++..     ......|..+
T Consensus       111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~~-----~~~~~~Y~as  184 (275)
T 4imr_A          111 DILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK-WGRVVSIGSINQLRP-----KSVVTAYAAT  184 (275)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-----CTTBHHHHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHhCCC-----CCCchhhHHH
Confidence            99999999743                       222445555566666 689999999877652     1234569999


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+.+.+.
T Consensus       185 Kaa~~~l~  192 (275)
T 4imr_A          185 KAAQHNLI  192 (275)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98776663

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.76  E-value=1.8e-17  Score=123.17  Aligned_cols=129  Identities=14%  Similarity=0.152  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--C---CCeEEEEccCCChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--N---LGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~---~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.. ++..  .   ..+.++.+|++|++++.++++  
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   85 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRN-----PDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV   85 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322 2221  1   268899999999999888876  


Q ss_pred             -----CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 -----QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 -----~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                           ++|++|||||...                    +.+    .+.+++.+.+.+ .++||++||..++...     .
T Consensus        86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~  159 (281)
T 3svt_A           86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGG-GGSFVGISSIAASNTH-----R  159 (281)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCHHHHSCC-----T
T ss_pred             HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEeCHHHcCCC-----C
Confidence                 5899999999721                    222    334444555555 5799999998877543     2


Q ss_pred             ccchhhHhHhhhhHHHH
Q 040431          127 TLDMLEMTELIDQKIFI  143 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~~  143 (157)
                      ....|..+|.+.+.+..
T Consensus       160 ~~~~Y~asK~a~~~l~~  176 (281)
T 3svt_A          160 WFGAYGVTKSAVDHLMQ  176 (281)
T ss_dssp             TCTHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHH
Confidence            35689999998777643

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.76  E-value=2.2e-17  Score=122.66  Aligned_cols=133  Identities=13%  Similarity=0.042  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC-------CCchhhHh-h--hhcCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS-------GPSKSQLL-D--HFKNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~-~--~~~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....       ..+.++.. .  .....++.++.+|++|++++.++
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~   89 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESF   89 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence            47899999999999999999999999999999974321       01122211 1  11245789999999999999888


Q ss_pred             hc-------CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCc
Q 040431           74 IK-------QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        74 ~~-------~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~  123 (157)
                      ++       ++|++|||||...                   +.+    ++.+++.+.+.+ .++||++||..++...   
T Consensus        90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~---  165 (281)
T 3s55_A           90 VAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSSMLGHSAN---  165 (281)
T ss_dssp             HHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGSCC---
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcCCC---
Confidence            76       6999999999754                   222    444455566666 6899999998777543   


Q ss_pred             cCCccchhhHhHhhhhHHH
Q 040431          124 MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (157)
                        .....|..+|.+.+.+.
T Consensus       166 --~~~~~Y~asK~a~~~~~  182 (281)
T 3s55_A          166 --FAQASYVSSKWGVIGLT  182 (281)
T ss_dssp             --TTCHHHHHHHHHHHHHH
T ss_pred             --CCCchhHHHHHHHHHHH
Confidence              23568999998776663

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.76  E-value=2e-17  Score=121.21  Aligned_cols=132  Identities=14%  Similarity=0.060  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|+++++.......+..+.+.. ...++.++.+|++|++++.++++       +
T Consensus        13 ~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   91 (256)
T 3ezl_A           13 QRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA-LGFDFYASEGNVGDWDSTKQAFDKVKAEVGE   91 (256)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCeeEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999885432211111222222 24578999999999999988876       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        92 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  165 (256)
T 3ezl_A           92 IDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQKGQ-----FGQTNYST  165 (256)
T ss_dssp             EEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGGGSC-----SCCHHHHH
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhccCC-----CCCcccHH
Confidence            899999999754                       222555666677776 6899999998776543     34568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       166 sK~a~~~~~  174 (256)
T 3ezl_A          166 AKAGIHGFT  174 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999776663

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.76  E-value=1e-17  Score=123.97  Aligned_cols=129  Identities=9%  Similarity=0.061  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh---hhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD---HFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.    .+..+.+.   +....++.++.+|++|++++.++++     
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN----AEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999963    22222221   1224578999999999999888876     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     .....
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~  178 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVASIIGERGN-----MGQTN  178 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCC-----TTCHH
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEechhhcCCC-----CCchH
Confidence              6999999999854                       122455666666666 6899999998776532     34568


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       179 Y~asK~a~~~~~  190 (271)
T 4iin_A          179 YSASKGGMIAMS  190 (271)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999999877663

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.76  E-value=2.6e-17  Score=120.73  Aligned_cols=129  Identities=12%  Similarity=0.084  Sum_probs=93.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.    +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK----EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCC----hHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999931    3333222 111  13468889999999999888876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+||||||...                   +.++    +.+++.+.+.+..++||++||..++...     .+...
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~-----~~~~~  157 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW-----PLFVH  157 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC-----TTCHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCC-----CCccH
Confidence              7899999999743                   1223    3344444444313699999998766432     34568


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       158 Y~~sK~a~~~~  168 (261)
T 1gee_A          158 YAASKGGMKLM  168 (261)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999876665

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.76  E-value=7.6e-18  Score=125.11  Aligned_cols=127  Identities=12%  Similarity=0.056  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh----HhhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ----LLDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~----~~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     .++.+    .+......++.++.+|++|++++.++++    
T Consensus        27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~  101 (277)
T 4fc7_A           27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS-----LPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK  101 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC-----HHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     43332    2222235678999999999999888876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHHHHHHH----HHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LADQVKII----AAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~~~~l~----~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++|||||...                   ..++..++    +.+.+.+ .++||++||..++...+     ...
T Consensus       102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~-----~~~  175 (277)
T 4fc7_A          102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH-GGVIVNITATLGNRGQA-----LQV  175 (277)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCSHHHHTCT-----TCH
T ss_pred             HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCCCCC-----CcH
Confidence               6899999999643                   22333344    4445555 57999999987765422     346


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       176 ~Y~asKaa~~~l  187 (277)
T 4fc7_A          176 HAGSAKAAVDAM  187 (277)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            788888877666

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.76  E-value=1.6e-17  Score=121.80  Aligned_cols=127  Identities=13%  Similarity=0.152  Sum_probs=96.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccC--CChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDV--LNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~--~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+    .......+.++.+|+  +|++++.++++  
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGATVILLGRN-----EEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     4444322    222234788999999  89988887775  


Q ss_pred             -----CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 -----QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 -----~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                           ++|++|||||...                    ..+    .+.+++.+.+.+ .++||++||..++...     .
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~  160 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSSSVGRQGR-----A  160 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGTSCC-----T
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECChhhccCC-----C
Confidence                 6899999999742                    222    444555556666 6899999998776532     2


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+.+.+
T Consensus       161 ~~~~Y~asK~a~~~l  175 (252)
T 3f1l_A          161 NWGAYAASKFATEGM  175 (252)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHH
Confidence            356899999987766

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.76  E-value=2.2e-17  Score=121.25  Aligned_cols=129  Identities=12%  Similarity=-0.033  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhc---------CCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFK---------NLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~---------~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++.+.+. +..         ..++.++.+|++|++++.++
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   81 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGATVAACDLD-----RAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCL   81 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTC------------CCEEEECCTTSHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----hHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHH
Confidence            4689999999999999999999999999999998     44433221 111         14688999999999999888


Q ss_pred             hcC-------c-CEEEEcCCCcc-------------------hHHHHHHHHHHH----HhcCCccEEEeccccccccCCC
Q 040431           74 IKQ-------V-DVVISTVGHTL-------------------LADQVKIIAAIK----EAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        74 ~~~-------~-d~vv~~a~~~~-------------------~~~~~~l~~~~~----~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      ++.       + |+|||+||...                   ..++.++++++.    +.+..++||++||..++...  
T Consensus        82 ~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~--  159 (264)
T 2pd6_A           82 LEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN--  159 (264)
T ss_dssp             HHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC--
T ss_pred             HHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC--
Confidence            763       3 99999999753                   223444544443    33213689999998665432  


Q ss_pred             ccCCccchhhHhHhhhhHHH
Q 040431          123 EMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~  142 (157)
                         .+...|..+|.+.+.+.
T Consensus       160 ---~~~~~Y~~sK~a~~~~~  176 (264)
T 2pd6_A          160 ---VGQTNYAASKAGVIGLT  176 (264)
T ss_dssp             ---TTBHHHHHHHHHHHHHH
T ss_pred             ---CCChhhHHHHHHHHHHH
Confidence               24568999998776663

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.76  E-value=1.8e-17  Score=119.99  Aligned_cols=129  Identities=16%  Similarity=0.114  Sum_probs=95.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +++++||||+|+||++++++|++.|++|++++|+     .++.+.+    ......++.++.+|++|++++.++++    
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   76 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARS-----VDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLE   76 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999998     4444322    21235678999999999999998876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++|||||...                   ..++    +.+++.+.+.  .++++++||.......     ....
T Consensus        77 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~ii~~sS~~~~~~~-----~~~~  149 (235)
T 3l77_A           77 RFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT--GGLALVTTSDVSARLI-----PYGG  149 (235)
T ss_dssp             HHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGSSCC-----TTCH
T ss_pred             hcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcEEEEecchhcccC-----CCcc
Confidence               6899999999854                   2223    3444444333  3577777776554332     2346


Q ss_pred             hhhHhHhhhhHHHHH
Q 040431          130 MLEMTELIDQKIFIY  144 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~  144 (157)
                      .|..+|.+.+.+...
T Consensus       150 ~Y~~sKaa~~~~~~~  164 (235)
T 3l77_A          150 GYVSTKWAARALVRT  164 (235)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            799999987776443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.76  E-value=1.3e-17  Score=123.51  Aligned_cols=128  Identities=13%  Similarity=0.018  Sum_probs=96.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-h--hcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-H--FKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~--~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|..    .+..+.+. +  .....+.++.+|++|++++.++++     
T Consensus        28 ~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYASS----AGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER  103 (269)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCC----hHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999998853    22222221 1  124578899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   +.+    ++.+++.+.+.+ .++||++||..++...     .....
T Consensus       104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~  177 (269)
T 4dmm_A          104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIASVVGEMGN-----PGQAN  177 (269)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCHHHHHCC-----TTCHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcCCC-----CCchh
Confidence              6899999999864                   222    444555556666 6899999998776533     23568


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       178 Y~asK~a~~~l  188 (269)
T 4dmm_A          178 YSAAKAGVIGL  188 (269)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999877666

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.76  E-value=2.3e-17  Score=123.44  Aligned_cols=130  Identities=11%  Similarity=0.028  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+    ......++.++.+|++|++++.++++    
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK-----MDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322    11114578999999999999988876    


Q ss_pred             ---CcCEEEEcCCCcc-------------------hHHHHHHHH----HHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-------------------LADQVKIIA----AIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-------------------~~~~~~l~~----~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+|||+||...                   +.++..+++    .+.+....++||++||..++...     .+..
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~-----~~~~  175 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS-----GFVV  175 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC-----TTCH
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC-----CCcc
Confidence               4699999999642                   222333433    34322225799999998776532     3456


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       176 ~Y~~sK~a~~~~~~  189 (302)
T 1w6u_A          176 PSASAKAGVEAMSK  189 (302)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            89999998877643

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.76  E-value=3.3e-17  Score=121.26  Aligned_cols=121  Identities=13%  Similarity=0.101  Sum_probs=95.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....            ...+..+.+|++|++++.++++       +
T Consensus        14 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A           14 DKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD------------VNVSDHFKIDVTNEEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C------------TTSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc------------cCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999984322            1256788999999999988876       6


Q ss_pred             cCEEEEcCCCcc-------------------hH----HHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LA----DQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~----~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   +.    .++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  155 (269)
T 3vtz_A           82 IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIASVQSYAAT-----KNAAAYVT  155 (269)
T ss_dssp             CCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSBC-----TTCHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhccCC-----CCChhHHH
Confidence            899999999754                   12    2445555566666 6899999998887643     23568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       156 sKaa~~~l~  164 (269)
T 3vtz_A          156 SKHALLGLT  164 (269)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999877763

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.76  E-value=4.7e-17  Score=121.27  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=98.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGVTVGALGRT-----RTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLK  102 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     44444322 22  23468899999999999888876     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|++|||||...                    +.+    .+.+++.+++.+ .++||++||..++...+   .....
T Consensus       103 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~~~~---~~~~~  178 (283)
T 3v8b_A          103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSSINGTRTFT---TPGAT  178 (283)
T ss_dssp             HSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTBCC---STTCH
T ss_pred             hCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcChhhccCCC---CCCch
Confidence              6999999999742                    222    444555557766 68999999987764211   13466


Q ss_pred             hhhHhHhhhhHHHH
Q 040431          130 MLEMTELIDQKIFI  143 (157)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (157)
                      .|..+|.+.+.+..
T Consensus       179 ~Y~asKaa~~~l~~  192 (283)
T 3v8b_A          179 AYTATKAAQVAIVQ  192 (283)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999998777643

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.75  E-value=2.5e-17  Score=122.63  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=96.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||+++++.|++.|++|+++.|+     +++.+.+ ++..  ..++.++.+|++|++++.++++     
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRT-----QKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS-----HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999998877     4433322 2221  3468899999999999988874     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||+||...                   +.+    ++.+++.+.+.+ .++||++||..++...     .....
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~~~~~  192 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGLTGN-----VGQAN  192 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----TTCHH
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhccCC-----CCCch
Confidence              6899999999753                   122    445555566666 6899999998766432     23567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       193 Y~asK~a~~~~~  204 (285)
T 2c07_A          193 YSSSKAGVIGFT  204 (285)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            889988776663

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.75  E-value=2.8e-18  Score=125.05  Aligned_cols=124  Identities=13%  Similarity=0.085  Sum_probs=93.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----~~d~   79 (157)
                      |++++||||+|+||++++++|++.|++|++++|+....     +      .    .+.+|++|++++.++++    ++|+
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~------~----~~~~D~~~~~~~~~~~~~~~~~~d~   65 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI-----E------A----DLSTPGGRETAVAAVLDRCGGVLDG   65 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-----E------C----CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHc-----c------c----cccCCcccHHHHHHHHHHcCCCccE
Confidence            45899999999999999999999999999999984321     0      0    15689999999998886    7999


Q ss_pred             EEEcCCCcc------------hHHHHHHHHHHHHh----cCCccEEEeccccccccCCCcc-------------------
Q 040431           80 VISTVGHTL------------LADQVKIIAAIKEA----EGASRGTLRTQKGKMSSLSSEM-------------------  124 (157)
Q Consensus        80 vv~~a~~~~------------~~~~~~l~~~~~~~----~~~~~~v~~Ss~~~~~~~~~~~-------------------  124 (157)
                      |||+||...            +.++.++++++...    + .++||++||..++.......                   
T Consensus        66 vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (255)
T 2dkn_A           66 LVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQ-QPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAE  144 (255)
T ss_dssp             EEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHH
T ss_pred             EEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcC-CceEEEEeccccccccccccchhhhhcccchhhhhhhcc
Confidence            999999754            34456666655443    4 58999999998886431110                   


Q ss_pred             --CCccchhhHhHhhhhHHHH
Q 040431          125 --TTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~~  143 (157)
                        ..+...|..+|.+.+.+..
T Consensus       145 ~~~~~~~~Y~~sK~a~~~~~~  165 (255)
T 2dkn_A          145 QQGQTHLAYAGSKYAVTCLAR  165 (255)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhHHHHHHHHHHHHH
Confidence              1356789999988777643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.75  E-value=5.9e-17  Score=119.07  Aligned_cols=128  Identities=9%  Similarity=0.017  Sum_probs=101.0

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +.|+++||||+++||+++++.|++.|++|++++|+     .++++... +.  ...++.++++|++|+++++++++    
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~-----~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL-----EDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999998     55554332 22  24578899999999999988875    


Q ss_pred             ---CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ---QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ---~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                         ++|++|||||...                        ...++.+++.|++.+ .++||++||..+....+     ..
T Consensus        81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~~~~-----~~  154 (254)
T 4fn4_A           81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIRGGF-----AG  154 (254)
T ss_dssp             HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCSSS-----SC
T ss_pred             HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcCCCC-----CC
Confidence               6999999999643                        333778888888887 78999999987765432     34


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+...+
T Consensus       155 ~~Y~asKaal~~l  167 (254)
T 4fn4_A          155 APYTVAKHGLIGL  167 (254)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            5788888765544

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.75  E-value=2.8e-17  Score=124.44  Aligned_cols=127  Identities=13%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-h---h-cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-H---F-KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~---~-~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +   . ....+.++.+|++|++++.++++   
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIR-----QDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999999999999998     44443221 1   1 12368999999999999988876   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHh------cCCccEEEeccccccccCCC
Q 040431           76 ----QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEA------EGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~------~~~~~~v~~Ss~~~~~~~~~  122 (157)
                          ++|+||||||...                   +.++    +.+++.+.+.      + .++||++||..++...+ 
T Consensus        83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~-~g~iV~isS~a~~~~~~-  160 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQK-GGHVVNTASMAAFLAAG-  160 (319)
T ss_dssp             HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCC-CCEEEEECCGGGTCCCS-
T ss_pred             HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCC-CcEEEEecccccccCCC-
Confidence                5799999999743                   2223    3444444443      2 46899999988876433 


Q ss_pred             ccCCccchhhHhHhhhhHH
Q 040431          123 EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (157)
                          ....|..+|.+.+.+
T Consensus       161 ----~~~~Y~aSKaal~~~  175 (319)
T 3ioy_A          161 ----SPGIYNTTKFAVRGL  175 (319)
T ss_dssp             ----SSHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHH
Confidence                345799999955444

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.75  E-value=2.6e-17  Score=121.92  Aligned_cols=127  Identities=12%  Similarity=0.077  Sum_probs=96.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATT-----EAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE  102 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     44443222 11  23568899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                   +.+    .+.+++.+.+.+ .++||++||..++...     .....
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~  176 (270)
T 3ftp_A          103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR-GGRIVNITSVVGSAGN-----PGQVN  176 (270)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCC-----TTBHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCCCC-----CCchh
Confidence              6899999999754                   222    444455555665 6899999998776543     23568


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       177 Y~asKaa~~~l  187 (270)
T 3ftp_A          177 YAAAKAGVAGM  187 (270)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999877666

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.75  E-value=6.9e-17  Score=119.81  Aligned_cols=128  Identities=13%  Similarity=0.134  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|.     ....+..++.  ...++.++.+|++|++++.++.+      
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-----DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-----HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999999865     2222222222  23468899999999998887754      


Q ss_pred             CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++|||||...                   ..+    .+.+++.+.+.+ .++||++||..++...     .....|.
T Consensus       106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~~~-----~~~~~Y~  179 (273)
T 3uf0_A          106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIASMLSFQGG-----RNVAAYA  179 (273)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----SSCHHHH
T ss_pred             CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchHhcCCC-----CCChhHH
Confidence            6999999999864                   222    444555566666 6899999998877543     2356899


Q ss_pred             HhHhhhhHHH
Q 040431          133 MTELIDQKIF  142 (157)
Q Consensus       133 ~~~~~~~~~~  142 (157)
                      .+|.+.+.+.
T Consensus       180 asKaa~~~l~  189 (273)
T 3uf0_A          180 ASKHAVVGLT  189 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998776663

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.75  E-value=4.2e-18  Score=130.06  Aligned_cols=106  Identities=15%  Similarity=0.105  Sum_probs=90.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-----CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC---
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-----HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ---   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-----~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~---   76 (157)
                      |+|+|||||||+|++++++|++.|     ++|++++|+.....         ....++.++.+|++|++++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW---------HEDNPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC---------CCSSCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc---------cccCceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999999999     99999999855421         1235789999999999999999987   


Q ss_pred             cCEEEEcCCCcc----------hHHHHHHHHHHHHh--cCCccEE-------EeccccccccC
Q 040431           77 VDVVISTVGHTL----------LADQVKIIAAIKEA--EGASRGT-------LRTQKGKMSSL  120 (157)
Q Consensus        77 ~d~vv~~a~~~~----------~~~~~~l~~~~~~~--~~~~~~v-------~~Ss~~~~~~~  120 (157)
                      +|+|||+|+...          +.++.++++++.+.  + +++|+       |+||.++|+..
T Consensus        73 ~d~vih~a~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~~~v~~~g~~i~~Ss~~vyg~~  134 (364)
T 2v6g_A           73 VTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPN-LKHISLQTGRKHYMGPFESYGKI  134 (364)
T ss_dssp             CCEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCTT-CCEEEEECCTHHHHCCGGGTTTS
T ss_pred             CCEEEECCCCCcchHHHHHHHhHHHHHHHHHHHHHhccc-cceEEeccCceEEEechhhcccc
Confidence            999999999753          56689999999987  5 78887       89999888753

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.75  E-value=3.2e-17  Score=121.51  Aligned_cols=127  Identities=12%  Similarity=0.199  Sum_probs=93.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh-----cCCCeEEEEccCCChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF-----KNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~-----~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+. +.     ...++.++.+|++|++++.++++  
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRH-----AERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT   80 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     44443222 11     12468899999999999998886  


Q ss_pred             -----CcCEEEEcCCCcc-----------------------hHH----HHHHHHHHHHhcCCccEEEeccccc-cccCCC
Q 040431           76 -----QVDVVISTVGHTL-----------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGK-MSSLSS  122 (157)
Q Consensus        76 -----~~d~vv~~a~~~~-----------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~-~~~~~~  122 (157)
                           ++|+||||||...                       ..+    .+.+++.+.+.+  ++||++||..+ +...  
T Consensus        81 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~~--  156 (278)
T 1spx_A           81 LGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHAT--  156 (278)
T ss_dssp             HHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSSCC--
T ss_pred             HHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecccccccCC--
Confidence                 7999999999742                       111    233444444444  79999999876 5432  


Q ss_pred             ccCCccchhhHhHhhhhHHH
Q 040431          123 EMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~  142 (157)
                         .....|..+|.+.+.+.
T Consensus       157 ---~~~~~Y~~sK~a~~~~~  173 (278)
T 1spx_A          157 ---PDFPYYSIAKAAIDQYT  173 (278)
T ss_dssp             ---TTSHHHHHHHHHHHHHH
T ss_pred             ---CCccHHHHHHHHHHHHH
Confidence               23567999998877663

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.75  E-value=1e-17  Score=123.77  Aligned_cols=128  Identities=15%  Similarity=0.175  Sum_probs=99.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhh-cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHF-KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~-~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.    +... ....+.++.+|++|++++.++++   
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g   84 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGANVLINGRR-----EENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYP   84 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcC
Confidence            4689999999999999999999999999999998     443332    2221 13457889999999999988876   


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++|||||...                       ...++.+++.+.+.+ .++||++||..++...     .....|.
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~  158 (267)
T 3t4x_A           85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK-EGRVIFIASEAAIMPS-----QEMAHYS  158 (267)
T ss_dssp             CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-EEEEEEECCGGGTSCC-----TTCHHHH
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEEcchhhccCC-----CcchHHH
Confidence            7999999999764                       122556667777766 6899999998877532     3456899


Q ss_pred             HhHhhhhHHH
Q 040431          133 MTELIDQKIF  142 (157)
Q Consensus       133 ~~~~~~~~~~  142 (157)
                      .+|.+.+.+.
T Consensus       159 asKaa~~~l~  168 (267)
T 3t4x_A          159 ATKTMQLSLS  168 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999877763

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.75  E-value=1.7e-17  Score=122.41  Aligned_cols=127  Identities=12%  Similarity=0.114  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hh-hcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DH-FKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~-~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+..    .. ....++.++.+|++|++++.++++   
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARD-----GERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE   82 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322    22 223358999999999999888775   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|++|||||...                   ..+    ++.+++.+.+.+ .++||++||..++...     ...
T Consensus        83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~  156 (265)
T 3lf2_A           83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRA-DAAIVCVNSLLASQPE-----PHM  156 (265)
T ss_dssp             HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEEEEEGGGTSCC-----TTB
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CeEEEEECCcccCCCC-----CCc
Confidence                6899999999854                   222    334444445554 5789999998776543     235


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       157 ~~Y~asKaa~~~l  169 (265)
T 3lf2_A          157 VATSAARAGVKNL  169 (265)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH
Confidence            6888998877665

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=4e-17  Score=119.59  Aligned_cols=128  Identities=10%  Similarity=0.073  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hh--cCCCeEEEEccCCChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HF--KNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~--~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+     .++.+.+.    ..  ...++.++.+|++|++++.++++  
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARS-----KQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESC-----HHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     44443222    11  12568899999999999888875  


Q ss_pred             -----CcCEEEEcCCCcc----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 -----QVDVVISTVGHTL----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 -----~~d~vv~~a~~~~----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                           ++|++|||||...                      ...++.+++.+.+.+ .++||++||..++...     .+.
T Consensus        82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~  155 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASRAAKYGF-----ADG  155 (250)
T ss_dssp             HHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC------------CCT
T ss_pred             HHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccHHhcCCC-----CCC
Confidence                 5899999999853                      122445555556666 6899999998766422     225


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       156 ~~Y~asKaa~~~l~  169 (250)
T 3nyw_A          156 GIYGSTKFALLGLA  169 (250)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHH
Confidence            68999998776663

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.75  E-value=5.2e-17  Score=118.02  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|++.|++|++++|+     +++.  .++.   ++.++.+|++| +++.++++       +
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~-----~~~~--~~~~---~~~~~~~D~~~-~~~~~~~~~~~~~~g~   70 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRN-----PEEA--AQSL---GAVPLPTDLEK-DDPKGLVKRALEALGG   70 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----CHHH--HHHH---TCEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHH--HHhh---CcEEEecCCch-HHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998     4332  1222   27889999998 77666553       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++.+++.+.+.+ .++||++||..++....   ..+...|..
T Consensus        71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~---~~~~~~Y~~  146 (239)
T 2ekp_A           71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGSVTTFTAGG---PVPIPAYTT  146 (239)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCT---TSCCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhccCCC---CCCCccHHH
Confidence            999999999743                       112455555666666 78999999988775431   234668999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       147 sK~a~~~~~  155 (239)
T 2ekp_A          147 AKTALLGLT  155 (239)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998776663

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.75  E-value=2.1e-17  Score=121.73  Aligned_cols=130  Identities=13%  Similarity=0.076  Sum_probs=96.6

Q ss_pred             CCeEEEEcCCC-cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTG-YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG-~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+| +||++++++|+++|++|++++|+     .++.+.    +.+....++.++.+|++|++++.++++   
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYH-----ERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCC-----HHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence            57899999997 79999999999999999999998     444332    222234579999999999999988875   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+||||||...                   +.++    +.+++.+.+.+..++||++||..++...     ...
T Consensus        97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----~~~  171 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ-----HSQ  171 (266)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC-----TTC
T ss_pred             HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC-----CCC
Confidence                6899999999753                   2223    3344444444225789999998776432     345


Q ss_pred             chhhHhHhhhhHHHH
Q 040431          129 DMLEMTELIDQKIFI  143 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (157)
                      ..|..+|.+.+.+..
T Consensus       172 ~~Y~~sKaa~~~~~~  186 (266)
T 3o38_A          172 SHYAAAKAGVMALTR  186 (266)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence            689999998777633

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.75  E-value=2.5e-17  Score=119.60  Aligned_cols=126  Identities=16%  Similarity=0.089  Sum_probs=92.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEE-ecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVL-VRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      ++++||||+|+||++++++|++.|++|+++ .|+     +++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARS-----AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDA   76 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-----HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC-----HHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999985 566     33333221 11  13468889999999999998876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHH----HHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVK----IIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|+|||+||...                   ..++.+    +++.+.+.+ .++||++||..++...     .....
T Consensus        77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~  150 (244)
T 1edo_A           77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLIGN-----IGQAN  150 (244)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----TTCHH
T ss_pred             cCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCEEEEECChhhcCCC-----CCCcc
Confidence              6899999999753                   222333    444444455 6899999998765432     23567


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+.+.+
T Consensus       151 Y~~sK~a~~~~  161 (244)
T 1edo_A          151 YAAAKAGVIGF  161 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             chhhHHHHHHH
Confidence            88888876665

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.75  E-value=7.3e-17  Score=120.04  Aligned_cols=128  Identities=16%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+|+||++++++|++.|++|++++|+     .++++.+......++.++.+|++|++++.++++       
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKS-----AERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFG   78 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC-----HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999998     655555444445678999999999999888775       


Q ss_pred             CcCEEEEcCCCcc------------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 QVDVVISTVGHTL------------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ~~d~vv~~a~~~~------------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                      ++|++|||||...                        ..+    ++.+++.+.+.+  +++|++||..++...     ..
T Consensus        79 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-----~~  151 (281)
T 3zv4_A           79 KIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR--GSVVFTISNAGFYPN-----GG  151 (281)
T ss_dssp             CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTSSS-----SS
T ss_pred             CCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CeEEEEecchhccCC-----CC
Confidence            5899999999742                        112    344444454443  689999998776532     23


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       152 ~~~Y~asKaa~~~l~  166 (281)
T 3zv4_A          152 GPLYTATKHAVVGLV  166 (281)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHH
Confidence            457999999877663

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.75  E-value=2e-17  Score=122.41  Aligned_cols=134  Identities=11%  Similarity=0.072  Sum_probs=93.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-h--hcCCCeEEEEccCCChHHHHHHhc--
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-H--FKNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~--~~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      |+++++++||||+|+||++++++|++.|++|+++.+..    .+..+.+. .  ....++.++.+|++|++++.++++  
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~   98 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAAN----REAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAV   98 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC----hhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            44457899999999999999999999999998874432    33333221 1  124578999999999999988876  


Q ss_pred             -----CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHh------cCCccEEEeccccccccCCCcc
Q 040431           76 -----QVDVVISTVGHTL--------------------LADQVKIIAAIKEA------EGASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        76 -----~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~------~~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                           ++|+||||||...                    +.++..+++++...      +..++||++||..++...+.  
T Consensus        99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--  176 (272)
T 4e3z_A           99 DRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSAT--  176 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTT--
T ss_pred             HHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCC--
Confidence                 6899999999753                    22233444443322      11468999999887653221  


Q ss_pred             CCccchhhHhHhhhhHHH
Q 040431          125 TTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~  142 (157)
                        ....|..+|.+.+.+.
T Consensus       177 --~~~~Y~asKaa~~~~~  192 (272)
T 4e3z_A          177 --QYVDYAASKAAIDTFT  192 (272)
T ss_dssp             --TCHHHHHHHHHHHHHH
T ss_pred             --CcchhHHHHHHHHHHH
Confidence              2456999999877663

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.75  E-value=1.1e-16  Score=116.66  Aligned_cols=123  Identities=10%  Similarity=0.053  Sum_probs=96.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .|+++||||+++||+++++.|++.|++|++.+|+....        +......+..+.+|++|+++++++++   ++|++
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~--------~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGV--------HAPRHPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTST--------TSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--------hhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            58999999999999999999999999999999985433        12234578899999999999998876   69999


Q ss_pred             EEcCCCcc---------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhh
Q 040431           81 ISTVGHTL---------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQ  139 (157)
Q Consensus        81 v~~a~~~~---------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (157)
                      |||||...                     ...++.+++.+++.+  ++||++||..+....+     ....|..+|....
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~~~~-----~~~~Y~asKaav~  155 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG--GSILNIASMYSTFGSA-----DRPAYSASKGAIV  155 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--EEEEEECCGGGTSCCS-----SCHHHHHHHHHHH
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeeccccCCCC-----CCHHHHHHHHHHH
Confidence            99999865                     233566677676654  7999999987764332     3457888888655


Q ss_pred             HH
Q 040431          140 KI  141 (157)
Q Consensus       140 ~~  141 (157)
                      .+
T Consensus       156 ~l  157 (242)
T 4b79_A          156 QL  157 (242)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.75  E-value=2.7e-17  Score=122.41  Aligned_cols=129  Identities=12%  Similarity=0.047  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++++.+. +.  ...++.++.+|++|++++.++++     
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGAKVVVTARN-----GNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRR   82 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSC-----HHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999988     44444332 22  23568899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|++|||||...                        ...++.+++.+.+.+ .++||++||..++...    .....
T Consensus        83 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~----~~~~~  157 (280)
T 3tox_A           83 FGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSSFVGHTAG----FAGVA  157 (280)
T ss_dssp             HSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCSBTTTBC----CTTCH
T ss_pred             cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhCcCC----CCCch
Confidence              6999999999652                        122444555566665 6799999998776211    13456


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       158 ~Y~asKaa~~~l~  170 (280)
T 3tox_A          158 PYAASKAGLIGLV  170 (280)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            8999998776663

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.75  E-value=6.8e-17  Score=118.83  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +++++||||+|+||++++++|++.|   ++|++++|+....  +.++.+... ..++.++.+|++|++++.++++     
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~--~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA--KELEDLAKN-HSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC--HHHHHHHHH-CTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhh--HHHHHhhcc-CCceEEEEecCCChHHHHHHHHHHHHh
Confidence            6789999999999999999999999   9999999985432  122222221 3478999999999999988876     


Q ss_pred             ----CcCEEEEcCCCcc--------------------hHHHHHHHHHH----HHh------cC----CccEEEecccccc
Q 040431           76 ----QVDVVISTVGHTL--------------------LADQVKIIAAI----KEA------EG----ASRGTLRTQKGKM  117 (157)
Q Consensus        76 ----~~d~vv~~a~~~~--------------------~~~~~~l~~~~----~~~------~~----~~~~v~~Ss~~~~  117 (157)
                          ++|+|||+||...                    +.++..+++++    .+.      +.    .++||++||..++
T Consensus        98 ~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~  177 (267)
T 1sny_A           98 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  177 (267)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             cCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccccc
Confidence                6999999999642                    22233444443    333      10    2689999998876


Q ss_pred             ccCCCccCCccchhhHhHhhhhHHHH
Q 040431          118 SSLSSEMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      ...+.  ..+...|..+|.+.+.+..
T Consensus       178 ~~~~~--~~~~~~Y~~sK~a~~~~~~  201 (267)
T 1sny_A          178 IQGNT--DGGMYAYRTSKSALNAATK  201 (267)
T ss_dssp             STTCC--SCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCC--CCCchHHHHHHHHHHHHHH
Confidence            54321  1245679999998877643

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.75  E-value=7.7e-17  Score=118.35  Aligned_cols=129  Identities=15%  Similarity=0.126  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|+++|++|++++|+     .++.+.+.......+.++.+|++|++++.++++       +
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   83 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRD-----KAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGK   83 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999999999998     656555444445678999999999999988876       6


Q ss_pred             cCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhc---CCccEEEeccccccccCCCccCCccc
Q 040431           77 VDVVISTVGHTL--------------------LAD----QVKIIAAIKEAE---GASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~---~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                      +|++|||||...                    +.+    ++.+++.+.+.+   ...+|+++||..++...     ....
T Consensus        84 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-----~~~~  158 (261)
T 3n74_A           84 VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR-----PNLA  158 (261)
T ss_dssp             CCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC-----TTCH
T ss_pred             CCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC-----CCcc
Confidence            899999999753                    112    444555555442   13469999998776532     2345


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       159 ~Y~asKaa~~~~~  171 (261)
T 3n74_A          159 WYNATKGWVVSVT  171 (261)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7899998776663

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.74  E-value=3.5e-17  Score=120.19  Aligned_cols=129  Identities=12%  Similarity=0.101  Sum_probs=99.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++++.+.+....++.++.+|++|++++.++++       +
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRN-----ESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGA   82 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999999998     555554443334578999999999999887765       6


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      +|++|||||...                   ..++..+++++...- ..++||++||..++...     .....|..+|.
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~asKa  157 (255)
T 4eso_A           83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH-----PGMSVYSASKA  157 (255)
T ss_dssp             EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC-----TTBHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC-----CCchHHHHHHH
Confidence            899999999864                   333555666665431 13589999998876543     24568999999


Q ss_pred             hhhHHH
Q 040431          137 IDQKIF  142 (157)
Q Consensus       137 ~~~~~~  142 (157)
                      +.+.+.
T Consensus       158 a~~~~~  163 (255)
T 4eso_A          158 ALVSFA  163 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876663

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.74  E-value=1.1e-16  Score=117.24  Aligned_cols=131  Identities=18%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCCh-HHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNH-ESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~-~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++ |++++|+..   .+..+.+.+.. ..++.++.+|++|+ +++.++++     
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~---~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN---PTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC---HHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCch---HHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            578999999999999999999999997 889988742   13333333322 34688999999998 88877765     


Q ss_pred             --CcCEEEEcCCCcc-----------hHHHHHHHHHHHH----hcC--CccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           76 --QVDVVISTVGHTL-----------LADQVKIIAAIKE----AEG--ASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------~~~~~~l~~~~~~----~~~--~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                        ++|+||||||...           ..++..+++++..    .+.  .++||++||..++...     .....|..+|.
T Consensus        82 ~g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~~sK~  156 (254)
T 1sby_A           82 LKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI-----HQVPVYSASKA  156 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----TTSHHHHHHHH
T ss_pred             cCCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC-----CCchHHHHHHH
Confidence              6899999999754           3334455555443    210  2579999998877542     23568999998


Q ss_pred             hhhHHH
Q 040431          137 IDQKIF  142 (157)
Q Consensus       137 ~~~~~~  142 (157)
                      +.+.+.
T Consensus       157 a~~~~~  162 (254)
T 1sby_A          157 AVVSFT  162 (254)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877663

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.74  E-value=9.6e-17  Score=119.21  Aligned_cols=134  Identities=12%  Similarity=0.064  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC--------CCchhhHhh-h--hcCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS--------GPSKSQLLD-H--FKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~--------~~~~~~~~~-~--~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....        +.++.+.+. .  ....++.++.+|++|++++.+
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   94 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALRE   94 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence            46899999999999999999999999999999853211        123333221 1  124578899999999999988


Q ss_pred             Hhc-------CcCEEEEcCCCcc-------------------hH----HHHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           73 AIK-------QVDVVISTVGHTL-------------------LA----DQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        73 ~~~-------~~d~vv~~a~~~~-------------------~~----~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      +++       ++|++|||||...                   +.    .++.+++.+.+.+..++||++||..++...+ 
T Consensus        95 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-  173 (280)
T 3pgx_A           95 LVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATP-  173 (280)
T ss_dssp             HHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCT-
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCCC-
Confidence            876       6899999999864                   22    2444555556653247899999988765432 


Q ss_pred             ccCCccchhhHhHhhhhHHH
Q 040431          123 EMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~  142 (157)
                          ....|..+|.+.+.+.
T Consensus       174 ----~~~~Y~asKaa~~~~~  189 (280)
T 3pgx_A          174 ----GNGHYSASKHGLTALT  189 (280)
T ss_dssp             ----TBHHHHHHHHHHHHHH
T ss_pred             ----CchhHHHHHHHHHHHH
Confidence                3568999998776663

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.74  E-value=3.6e-17  Score=120.57  Aligned_cols=132  Identities=12%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|.+    +++.+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS----SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCc----hHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999842    3333222 121  24568899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEecccccc-ccCCCccCCccchhh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKM-SSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~-~~~~~~~~~~~~~~~  132 (157)
                        ++|+|||+||...                   ..++.++++++...- ..++||++||..++ ...     .....|.
T Consensus        97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~-----~~~~~Y~  171 (274)
T 1ja9_A           97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI-----PNHALYA  171 (274)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC-----CSCHHHH
T ss_pred             cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCC-----CCCchHH
Confidence              7899999999753                   334566666665541 02689999998877 322     2356799


Q ss_pred             HhHhhhhHHHHH
Q 040431          133 MTELIDQKIFIY  144 (157)
Q Consensus       133 ~~~~~~~~~~~~  144 (157)
                      .+|.+.+.+...
T Consensus       172 ~sK~a~~~~~~~  183 (274)
T 1ja9_A          172 GSKAAVEGFCRA  183 (274)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988777443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.74  E-value=2.6e-17  Score=120.26  Aligned_cols=134  Identities=13%  Similarity=0.108  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC-CCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE-STISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+ .... .+..+.+.. ...++.++.+|++|++++.++++       
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANI-DETIASMRA-DGGDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTH-HHHHHHHHH-TTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhH-HHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999998 3221 111111211 13468899999999999998887       


Q ss_pred             CcCEEEEcCCC-cc-------------------hHHHHH----HHHHHHHhc----CCccEEEeccccccccCCCccCCc
Q 040431           76 QVDVVISTVGH-TL-------------------LADQVK----IIAAIKEAE----GASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ~~d~vv~~a~~-~~-------------------~~~~~~----l~~~~~~~~----~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                      ++|+|||+||. ..                   +.++..    +++.+.+.+    ..++||++||..++...    ..+
T Consensus        85 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----~~~  160 (258)
T 3afn_B           85 GIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGG----GPG  160 (258)
T ss_dssp             SCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCC----CTT
T ss_pred             CCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCC----CCC
Confidence            79999999997 21                   122333    333443321    12689999998776411    134


Q ss_pred             cchhhHhHhhhhHHHH
Q 040431          128 LDMLEMTELIDQKIFI  143 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~~  143 (157)
                      ...|..+|.+.+.+..
T Consensus       161 ~~~Y~~sK~a~~~~~~  176 (258)
T 3afn_B          161 AGLYGAAKAFLHNVHK  176 (258)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHH
Confidence            5689999998877643

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.74  E-value=9.1e-17  Score=118.45  Aligned_cols=127  Identities=12%  Similarity=0.074  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGADLVLAART-----VERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     44444322 21  24578999999999999988875     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|++|||||...                    ..+    .+.+++.+.+.+  ++||++||..++...     ....
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-----~~~~  158 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNSMVVRHSQ-----AKYG  158 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECCGGGGCCC-----TTCH
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECcchhccCC-----CccH
Confidence              6899999998742                    222    333444444543  699999998776542     2356


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       159 ~Y~asKaa~~~~~  171 (264)
T 3ucx_A          159 AYKMAKSALLAMS  171 (264)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8999998776663

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.74  E-value=4.7e-17  Score=119.38  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+||++++++|++.|  +.|+++.|+     .++.+.+.+....++.++.+|++|++++.++++      
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARS-----EAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGH   76 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESC-----HHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCC-----HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            6799999999999999999999985  678888887     555554443334578999999999999988876      


Q ss_pred             -CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|++|||||...                    ..+    ++.+++.+.+.+  ++||++||..++...     .....
T Consensus        77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~~~-----~~~~~  149 (254)
T 3kzv_A           77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNMYF-----SSWGA  149 (254)
T ss_dssp             SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCCSS-----CCSHH
T ss_pred             CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhccCC-----CCcch
Confidence             6899999999742                    222    344445556654  799999998776542     34568


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       150 Y~asK~a~~~~~~  162 (254)
T 3kzv_A          150 YGSSKAALNHFAM  162 (254)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998777643

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.74  E-value=5.1e-17  Score=120.47  Aligned_cols=138  Identities=13%  Similarity=0.089  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC-------CCchhhHh-h--hhcCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS-------GPSKSQLL-D--HFKNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~-~--~~~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....       ..+..+.. +  .....++.++.+|++|++++.++
T Consensus        13 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~   92 (278)
T 3sx2_A           13 GKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSAA   92 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence            47899999999999999999999999999999873211       02222211 1  11245789999999999999988


Q ss_pred             hc-------CcCEEEEcCCCcc---------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           74 IK-------QVDVVISTVGHTL---------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        74 ~~-------~~d~vv~~a~~~~---------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                      ++       ++|++|||||...               +.+    .+.+++.+.+.+..++||++||..++..... ....
T Consensus        93 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-~~~~  171 (278)
T 3sx2_A           93 LQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS-ADPG  171 (278)
T ss_dssp             HHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC-SSHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc-CCCC
Confidence            76       6999999999864               222    4444555555532478999999877653211 1234


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       172 ~~~Y~asKaa~~~~~  186 (278)
T 3sx2_A          172 SVGYVAAKHGVVGLM  186 (278)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHH
Confidence            567999998776663

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.74  E-value=5.1e-17  Score=121.13  Aligned_cols=133  Identities=8%  Similarity=0.072  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc--hhh----HhhhhcCCCeEEEEccCCChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS--KSQ----LLDHFKNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~--~~~----~~~~~~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||++++++|+++|++|++++|+....+..  .++    .+.. ...++.++.+|++|++++.++++  
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEE-AGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH-HTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999986543221  111    1222 24578999999999999988876  


Q ss_pred             -----CcCEEEEcCCCcc-------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 -----QVDVVISTVGHTL-------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 -----~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                           ++|++|||||...                   ..++..+++++    ++.+ .++||++||..++...    ...
T Consensus        88 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~----~~~  162 (285)
T 3sc4_A           88 VEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRD-NPHILTLSPPIRLEPK----WLR  162 (285)
T ss_dssp             HHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSS-SCEEEECCCCCCCSGG----GSC
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhccCC----CCC
Confidence                 7999999999864                   23344444444    3334 5799999997765432    123


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       163 ~~~Y~asKaal~~~~  177 (285)
T 3sc4_A          163 PTPYMMAKYGMTLCA  177 (285)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHH
Confidence            468999998776663

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.74  E-value=3.3e-17  Score=120.66  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=99.6

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  |+||.+++++|++.|++|++++|+......+..+.+......++.++.+|++|++++.++++      
T Consensus        20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (267)
T 3gdg_A           20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADF   99 (267)
T ss_dssp             TCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence            5789999999  89999999999999999999988853221122222333335678999999999999988876      


Q ss_pred             -CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|++|||||...                   +.+    ++.+++.+.+.+ .++||++||..++....   ......|
T Consensus       100 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~---~~~~~~Y  175 (267)
T 3gdg_A          100 GQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASMSGHIANF---PQEQTSY  175 (267)
T ss_dssp             SCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCCS---SSCCHHH
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccccccccCC---CCCCCcc
Confidence             5799999999764                   122    444555556666 68999999977654321   2346789


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       176 ~~sK~a~~~~~  186 (267)
T 3gdg_A          176 NVAKAGCIHMA  186 (267)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999877763

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.74  E-value=3.5e-17  Score=121.86  Aligned_cols=129  Identities=13%  Similarity=0.103  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+    .......+.++.+|++|++++.++++    
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  107 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEGYSVVITGRR-----PDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA  107 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998     4443322    22223346899999999999988875    


Q ss_pred             ---CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCc
Q 040431           76 ---QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ---~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                         ++|++|||||...                        ...++.+++.+.+.+ ..++||++||..++...     ..
T Consensus       108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-----~~  182 (281)
T 4dry_A          108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPR-----PN  182 (281)
T ss_dssp             HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCC-----TT
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCC-----CC
Confidence               5799999999742                        112455566666553 13699999998776532     34


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+.+.+.
T Consensus       183 ~~~Y~asKaa~~~l~  197 (281)
T 4dry_A          183 SAPYTATKHAITGLT  197 (281)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            568999998776663

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.74  E-value=6.7e-18  Score=119.73  Aligned_cols=125  Identities=11%  Similarity=0.101  Sum_probs=97.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~vv   81 (157)
                      |+++||||+|++|++++++|+++  +|++++|+     +++.+.+......  .++.+|++|++++.++++   ++|+||
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~-----~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~id~vi   71 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRR-----AGALAELAREVGA--RALPADLADELEAKALLEEAGPLDLLV   71 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSC-----HHHHHHHHHHHTC--EECCCCTTSHHHHHHHHHHHCSEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECC-----HHHHHHHHHhccC--cEEEeeCCCHHHHHHHHHhcCCCCEEE
Confidence            57999999999999999999998  99999987     4444433222122  788999999999999998   899999


Q ss_pred             EcCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           82 STVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |+||...                   ..++..+++++.+.+ .++||++||..++...     .+...|..+|.+.+.+.
T Consensus        72 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~sS~~~~~~~-----~~~~~Y~~sK~a~~~~~  145 (207)
T 2yut_A           72 HAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQK-GARAVFFGAYPRYVQV-----PGFAAYAAAKGALEAYL  145 (207)
T ss_dssp             ECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEE-EEEEEEECCCHHHHSS-----TTBHHHHHHHHHHHHHH
T ss_pred             ECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcC-CcEEEEEcChhhccCC-----CCcchHHHHHHHHHHHH
Confidence            9999753                   344667777775555 6899999998887532     34668999999877774


Q ss_pred             HH
Q 040431          143 IY  144 (157)
Q Consensus       143 ~~  144 (157)
                      ..
T Consensus       146 ~~  147 (207)
T 2yut_A          146 EA  147 (207)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.73  E-value=1.2e-17  Score=128.35  Aligned_cols=104  Identities=13%  Similarity=0.214  Sum_probs=89.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      |+|+|||||||+|++|+++|++.|+ +|++++|+                           .|++++.++++++|+|||+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~~~d~Vih~   53 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALLKADFIVHL   53 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhccCCEEEEC
Confidence            5899999999999999999999998 77766543                           5888899999999999999


Q ss_pred             CCCcc-----------hHHHHHHHHHHHHhcCCc-cEEEeccccccccCCCccCCccchhhHhHhhhhHHHHHH
Q 040431           84 VGHTL-----------LADQVKIIAAIKEAEGAS-RGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus        84 a~~~~-----------~~~~~~l~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      |+...           ..++.++++++.+.+ ++ +||++||.++|+         ...|+.+|...|.+...+
T Consensus        54 a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~Ss~~~~~---------~~~Y~~sK~~~E~~~~~~  117 (369)
T 3st7_A           54 AGVNRPEHDKEFSLGNVSYLDHVLDILTRNT-KKPAILLSSSIQATQ---------DNPYGESKLQGEQLLREY  117 (369)
T ss_dssp             CCSBCTTCSTTCSSSCCBHHHHHHHHHTTCS-SCCEEEEEEEGGGGS---------CSHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCchhhcC---------CCCchHHHHHHHHHHHHH
Confidence            99754           566899999999988 66 999999999886         568999999988885553

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.73  E-value=5.9e-17  Score=121.14  Aligned_cols=133  Identities=12%  Similarity=0.087  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.... .+....+.+....++.++.+|++|++++.++++       +
T Consensus        47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGD-ANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999983211 111111112224578999999999999888876       6


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|++|||||...                    +.++..+++++...- ..++||++||..++...+     ....|..+|
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~-----~~~~Y~asK  200 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE-----TLIDYSATK  200 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCT-----TCHHHHHHH
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCC-----CChhHHHHH
Confidence            899999999752                    334566666666542 135899999988775432     346799999


Q ss_pred             hhhhHHH
Q 040431          136 LIDQKIF  142 (157)
Q Consensus       136 ~~~~~~~  142 (157)
                      .+.+.+.
T Consensus       201 aa~~~l~  207 (291)
T 3ijr_A          201 GAIVAFT  207 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777663

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.73  E-value=3.8e-17  Score=119.03  Aligned_cols=128  Identities=9%  Similarity=0.099  Sum_probs=95.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccC--CChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDV--LNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~--~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+    ......++.++.+|+  +|++++.++++  
T Consensus        14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~   88 (247)
T 3i1j_A           14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRT-----EASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV   88 (247)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC-----HHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4444322    222335677888887  88888887765  


Q ss_pred             -----CcCEEEEcCCCcc--------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 -----QVDVVISTVGHTL--------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 -----~~d~vv~~a~~~~--------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                           ++|++|||||...                    +.++    +.+++.+.+.+ .++||++||..++...     .
T Consensus        89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----~  162 (247)
T 3i1j_A           89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE-DASIAFTSSSVGRKGR-----A  162 (247)
T ss_dssp             HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SEEEEEECCGGGTSCC-----T
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCeEEEEcchhhcCCC-----C
Confidence                 6899999999742                    2223    33444445555 6799999998776532     3


Q ss_pred             ccchhhHhHhhhhHHH
Q 040431          127 TLDMLEMTELIDQKIF  142 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~  142 (157)
                      ....|..+|.+.+.+.
T Consensus       163 ~~~~Y~~sK~a~~~~~  178 (247)
T 3i1j_A          163 NWGAYGVSKFATEGLM  178 (247)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHH
Confidence            4568999999877763

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.73  E-value=3.3e-17  Score=115.87  Aligned_cols=118  Identities=22%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC---cCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ---VDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~---~d~v   80 (157)
                      +|+++||||+|+||++++++|+ +|++|++++|+..                   .+.+|++|++++.+++++   +|+|
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~~d~v   62 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQVGKVDAI   62 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHhCCCCEE
Confidence            5689999999999999999999 9999999998821                   468999999999998875   8999


Q ss_pred             EEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhHhhhhH
Q 040431           81 ISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQK  140 (157)
Q Consensus        81 v~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (157)
                      ||+||...                   ..++.++++++.+.- ..++|+++||..++...     .+...|..+|.+.+.
T Consensus        63 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~-----~~~~~Y~~sK~~~~~  137 (202)
T 3d7l_A           63 VSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPI-----VQGASAAMANGAVTA  137 (202)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCC-----TTCHHHHHHHHHHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCC-----CccHHHHHHHHHHHH
Confidence            99999642                   334556777766551 02689999998765432     345689999998887


Q ss_pred             HHHHHHh
Q 040431          141 IFIYFWG  147 (157)
Q Consensus       141 ~~~~~~~  147 (157)
                      + ...+.
T Consensus       138 ~-~~~~~  143 (202)
T 3d7l_A          138 F-AKSAA  143 (202)
T ss_dssp             H-HHHHT
T ss_pred             H-HHHHH
Confidence            7 44443

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.73  E-value=2.3e-17  Score=121.31  Aligned_cols=128  Identities=13%  Similarity=0.052  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||+++++.|++.|++|++.+|+     .++++.. ++.  ...++.++++|++|+++++++++     
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~-----~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIR-----ATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC-----HHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999987     4444322 222  23568889999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                       ...++.+++.+.+.++.++||++||..+....+     ....
T Consensus        84 ~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~-----~~~~  158 (255)
T 4g81_D           84 GIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARP-----TVAP  158 (255)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCT-----TCHH
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCC-----Cchh
Confidence              5899999999866                       333667777776653257999999987765432     3456


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+...+
T Consensus       159 Y~asKaal~~l  169 (255)
T 4g81_D          159 YTAAKGGIKML  169 (255)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777765544

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.73  E-value=8e-17  Score=119.80  Aligned_cols=130  Identities=15%  Similarity=0.067  Sum_probs=96.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+..    ...+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST----ESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999998832    112211 111  23468899999999998887765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                        ++|+||||||...                   +.++..+++++...  + .++||++||..++...+    .....|.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~----~~~~~Y~  179 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI-GGRLILMGSITGQAKAV----PKHAVYS  179 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT-TCEEEEECCGGGTCSSC----SSCHHHH
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc-CCeEEEEechhhccCCC----CCCcchH
Confidence              6899999999753                   34456666776665  4 57999999987654321    1356899


Q ss_pred             HhHhhhhHHH
Q 040431          133 MTELIDQKIF  142 (157)
Q Consensus       133 ~~~~~~~~~~  142 (157)
                      .+|.+.+.+.
T Consensus       180 asK~a~~~~~  189 (283)
T 1g0o_A          180 GSKGAIETFA  189 (283)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998777663

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.73  E-value=1.2e-16  Score=118.27  Aligned_cols=127  Identities=15%  Similarity=0.149  Sum_probs=93.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.+.. .++.++.+|++|++++.++++       +
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD-----ESGGRALEQEL-PGAVFILCDVTQEDDVKTLVSETIRRFGR   82 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHC-TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHh-cCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998     54444333222 247889999999999988876       6


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHH----HHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAI----KEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~----~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      +|++|||||...                    ..++..+++++    .+.  .++||++||..+....     .....|.
T Consensus        83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS~~~~~~~-----~~~~~Y~  155 (270)
T 1yde_A           83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVGAIGQ-----AQAVPYV  155 (270)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHHHHCC-----TTCHHHH
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcCccccCCC-----CCCcccH
Confidence            899999998642                    22233444443    333  4799999997665432     2345788


Q ss_pred             HhHhhhhHHHH
Q 040431          133 MTELIDQKIFI  143 (157)
Q Consensus       133 ~~~~~~~~~~~  143 (157)
                      .+|.+.+.+..
T Consensus       156 asKaa~~~~~~  166 (270)
T 1yde_A          156 ATKGAVTAMTK  166 (270)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887776633

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.73  E-value=4.1e-17  Score=121.50  Aligned_cols=127  Identities=13%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++.+.+.    .....++.++.+|++|++++.++++    
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~  102 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARS-----KETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK  102 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     44443322    2222368899999999999888775    


Q ss_pred             ---CcCEEEEc-CCCcc------------------hHHHHHHHHH----HHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVIST-VGHTL------------------LADQVKIIAA----IKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~-a~~~~------------------~~~~~~l~~~----~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|+|||| +|...                  +.++..++++    +.+.  .++||++||..++...     ....
T Consensus       103 ~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~g~iv~isS~~~~~~~-----~~~~  175 (286)
T 1xu9_A          103 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSLAGKVAY-----PMVA  175 (286)
T ss_dssp             HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEGGGTSCC-----TTCH
T ss_pred             HcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC--CCEEEEECCcccccCC-----CCcc
Confidence               69999999 56532                  2223333443    3333  3799999998776532     2456


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       176 ~Y~asK~a~~~~~  188 (286)
T 1xu9_A          176 AYSASKFALDGFF  188 (286)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8999999877663

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.73  E-value=4.4e-17  Score=120.24  Aligned_cols=127  Identities=14%  Similarity=0.089  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+.+....++.++.+|++|++++.++++       +
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGASLVAVDRE-----ERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGR   80 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999998     555443332223568899999999999988876       4


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      +|++|||||...                   ..++..+++++.... ..++||++||..++ ..     .....|..+|.
T Consensus        81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~-----~~~~~Y~asK~  154 (263)
T 2a4k_A           81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GA-----FGLAHYAAGKL  154 (263)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CH-----HHHHHHHHCSS
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CC-----CCcHHHHHHHH
Confidence            799999999753                   233445555555431 13689999998877 21     23457888877


Q ss_pred             hhhHH
Q 040431          137 IDQKI  141 (157)
Q Consensus       137 ~~~~~  141 (157)
                      +.+.+
T Consensus       155 a~~~~  159 (263)
T 2a4k_A          155 GVVGL  159 (263)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66555

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.73  E-value=8e-17  Score=122.36  Aligned_cols=133  Identities=15%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh-----cCCCeEEEEccCCChHHHHHHhcC--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF-----KNLGVNLVIGDVLNHESLVKAIKQ--   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~~~~~~~~--   76 (157)
                      .++++||||+|+||++++++|++.|++|+++.|+.... ....+.+...     ...++.++.+|++|++++.++++.  
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDL-KTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCG-GGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcH-HHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            57899999999999999999999999999888874432 1111122211     135689999999999999999874  


Q ss_pred             ---cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           77 ---VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        77 ---~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                         +|+||||||...                   +.+    ++.+++.+.+.+ .++||++||..++...     .....
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~-~g~IV~isS~~~~~~~-----~~~~~  154 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLMGL-----PFNDV  154 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTSCC-----TTCHH
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECCcccccCC-----CCChH
Confidence               899999998742                   222    334444456666 6899999998776532     23568


Q ss_pred             hhHhHhhhhHHHH
Q 040431          131 LEMTELIDQKIFI  143 (157)
Q Consensus       131 ~~~~~~~~~~~~~  143 (157)
                      |..+|.+.+.+..
T Consensus       155 Y~aSK~a~~~~~~  167 (327)
T 1jtv_A          155 YCASKFALEGLCE  167 (327)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998776633

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.73  E-value=9e-17  Score=118.93  Aligned_cols=128  Identities=15%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEec-CCCCCCCchhhHhh-hh---cCCCeEEEEccCCCh----HHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVR-ESTISGPSKSQLLD-HF---KNLGVNLVIGDVLNH----ESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~-~~---~~~~v~~~~~D~~~~----~~~~~~~   74 (157)
                      .++++||||+|+||++++++|++.|++|++++| +     +++.+.+. +.   ...++.++.+|++|+    +++.+++
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   85 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHS-----EGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDII   85 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-----HHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC-----hHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHH
Confidence            468999999999999999999999999999999 5     44433221 21   145688999999999    8888877


Q ss_pred             c-------CcCEEEEcCCCcc------------------------------hHHHHHHHHHHHH---hcCC------ccE
Q 040431           75 K-------QVDVVISTVGHTL------------------------------LADQVKIIAAIKE---AEGA------SRG  108 (157)
Q Consensus        75 ~-------~~d~vv~~a~~~~------------------------------~~~~~~l~~~~~~---~~~~------~~~  108 (157)
                      +       ++|+||||||...                              +.++..+++++..   .+ .      ++|
T Consensus        86 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~~~~g~i  164 (276)
T 1mxh_A           86 DCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEG-GAWRSRNLSV  164 (276)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCCEEE
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CCCCCCCcEE
Confidence            5       6899999999642                              1223445555554   33 3      799


Q ss_pred             EEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431          109 TLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       109 v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |++||..++...     .....|..+|.+.+.+.
T Consensus       165 v~isS~~~~~~~-----~~~~~Y~asK~a~~~l~  193 (276)
T 1mxh_A          165 VNLCDAMTDLPL-----PGFCVYTMAKHALGGLT  193 (276)
T ss_dssp             EEECCGGGGSCC-----TTCHHHHHHHHHHHHHH
T ss_pred             EEECchhhcCCC-----CCCeehHHHHHHHHHHH
Confidence            999998877532     23568999998876663

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.73  E-value=1.3e-16  Score=118.56  Aligned_cols=128  Identities=13%  Similarity=0.172  Sum_probs=94.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CC---CeEEEEccCCChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NL---GVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~---~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     +++.+.+ ++..  ..   ++.++.+|++|++++.++++  
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRS-----SERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST   80 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     4444322 2221  12   68899999999999888875  


Q ss_pred             -----CcCEEEEcCCCcc-----------------------hHHHHHH----HHHHHHhcCCccEEEeccccccccCCCc
Q 040431           76 -----QVDVVISTVGHTL-----------------------LADQVKI----IAAIKEAEGASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        76 -----~~d~vv~~a~~~~-----------------------~~~~~~l----~~~~~~~~~~~~~v~~Ss~~~~~~~~~~  123 (157)
                           ++|+||||||...                       +.++..+    ++.+.+.+  ++||++||..++...   
T Consensus        81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~---  155 (280)
T 1xkq_A           81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQA---  155 (280)
T ss_dssp             HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSSSC---
T ss_pred             HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCccccCCC---
Confidence                 6899999999641                       2223333    34444443  799999998776532   


Q ss_pred             cCCccchhhHhHhhhhHHH
Q 040431          124 MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (157)
                       ......|..+|.+.+.+.
T Consensus       156 -~~~~~~Y~asK~a~~~~~  173 (280)
T 1xkq_A          156 -QPDFLYYAIAKAALDQYT  173 (280)
T ss_dssp             -CCSSHHHHHHHHHHHHHH
T ss_pred             -CCcccHHHHHHHHHHHHH
Confidence             123568999998776663

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.73  E-value=7.5e-17  Score=119.54  Aligned_cols=135  Identities=6%  Similarity=0.021  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc--hhhHh-hh--hcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS--KSQLL-DH--FKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~--~~~~~-~~--~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....+..  .++.. ++  ....++.++.+|++|++++.++++   
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   85 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATV   85 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            57999999999999999999999999999999986542111  12111 11  124578899999999999988875   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|++|||||...                   ..+    ++.+++.+.+.+ .++||++||..++...   .....
T Consensus        86 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~---~~~~~  161 (274)
T 3e03_A           86 DTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP-NPHILTLAPPPSLNPA---WWGAH  161 (274)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS-SCEEEECCCCCCCCHH---HHHHC
T ss_pred             HHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC-CceEEEECChHhcCCC---CCCCC
Confidence                6899999999753                   222    444555555555 6899999997765421   01235


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       162 ~~Y~asKaal~~l~  175 (274)
T 3e03_A          162 TGYTLAKMGMSLVT  175 (274)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH
Confidence            67999998776663

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.73  E-value=5.6e-17  Score=119.06  Aligned_cols=120  Identities=21%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|++.|++|++++|+....             ..+.++.+|++|++++.++++       +
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~   87 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP-------------EGFLAVKCDITDTEQVEQAYKEIEETHGP   87 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh-------------ccceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999974322             127889999999999988875       4


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|+||||||...                   ..+    .+.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  161 (253)
T 2nm0_A           88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSVVGLLGS-----AGQANYAA  161 (253)
T ss_dssp             CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCCCCCCCH-----HHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECchhhCCCC-----CCcHHHHH
Confidence            799999999743                   222    344445555556 6899999998765421     23467888


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       162 sK~a~~~~~  170 (253)
T 2nm0_A          162 SKAGLVGFA  170 (253)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776663

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.2e-16  Score=119.45  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=97.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhh-h----cCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDH-F----KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~-~----~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .++++||||+|+||+++++.|++.|+   +|++++|+     .++.+.+.+ .    ...++.++.+|++|++++.++++
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~  107 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-----LEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIE  107 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-----HHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence            47899999999999999999999987   89999988     544443321 1    24568899999999999998876


Q ss_pred             -------CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc
Q 040431           76 -------QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        76 -------~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                             ++|++|||||...                        ...++.+++.+++.+ .++||++||..++...    
T Consensus       108 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~~~----  182 (287)
T 3rku_A          108 NLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGSIAGRDAY----  182 (287)
T ss_dssp             TSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCC----
T ss_pred             HHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECChhhcCCC----
Confidence                   5899999999642                        222445555556666 6899999998776532    


Q ss_pred             CCccchhhHhHhhhhHHH
Q 040431          125 TTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~  142 (157)
                       .....|..+|.+.+.+.
T Consensus       183 -~~~~~Y~asKaa~~~l~  199 (287)
T 3rku_A          183 -PTGSIYCASKFAVGAFT  199 (287)
T ss_dssp             -TTCHHHHHHHHHHHHHH
T ss_pred             -CCCchHHHHHHHHHHHH
Confidence             23568999998877663

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.72  E-value=9.5e-17  Score=117.26  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....     +        .+..+.+|++|++++.++++       +
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-----~--------~~~~~~~D~~~~~~~~~~~~~~~~~~g~   81 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-----K--------GLFGVEVDVTDSDAVDRAFTAVEEHQGP   81 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-----T--------TSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH-----H--------HhcCeeccCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999984332     1        11237899999999888875       5


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..+    .+.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  155 (247)
T 1uzm_A           82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLWGI-----GNQANYAA  155 (247)
T ss_dssp             CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC----------CCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEECCHhhccCC-----CCChhHHH
Confidence            899999999753                   112    344445555665 6899999998765432     23567888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+.+.+
T Consensus       156 sK~a~~~~  163 (247)
T 1uzm_A          156 SKAGVIGM  163 (247)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876665

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.72  E-value=6.3e-17  Score=120.84  Aligned_cols=97  Identities=21%  Similarity=0.267  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |||+|||||||||++|+++|+++||+|++++|++...              .   +..|    +...+.+.++|+|||+|
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~--------------~---~~~~----~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG--------------R---ITWD----ELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT--------------E---EEHH----HHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC--------------e---eecc----hhhHhhccCCCEEEEec
Confidence            5899999999999999999999999999999984321              0   1122    22334567899999999


Q ss_pred             CCcc-------------------hHHHHHHHHHHHHhcC-CccEEEeccccccccCCC
Q 040431           85 GHTL-------------------LADQVKIIAAIKEAEG-ASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        85 ~~~~-------------------~~~~~~l~~~~~~~~~-~~~~v~~Ss~~~~~~~~~  122 (157)
                      +...                   +.++.++++++.+.+. ..+|++.||.++|+....
T Consensus        60 ~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~  117 (298)
T 4b4o_A           60 GENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLT  117 (298)
T ss_dssp             CCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSS
T ss_pred             cCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCC
Confidence            7531                   4567888998888761 245888999999976543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.72  E-value=3.1e-16  Score=116.29  Aligned_cols=134  Identities=10%  Similarity=0.094  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC--------CCchhhHh-hh--hcCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS--------GPSKSQLL-DH--FKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~--------~~~~~~~~-~~--~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      .++++||||+|+||++++++|++.|++|++++|+....        ..++.+.. +.  .....+.++.+|++|++++.+
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   90 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRK   90 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            47899999999999999999999999999999853210        12222221 11  224578999999999999988


Q ss_pred             Hhc-------CcCEEEEcCCCcc-------------------hH----HHHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           73 AIK-------QVDVVISTVGHTL-------------------LA----DQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        73 ~~~-------~~d~vv~~a~~~~-------------------~~----~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      +++       ++|++|||||...                   ..    .++.+++.+.+.+..++||++||..++...+ 
T Consensus        91 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-  169 (277)
T 3tsc_A           91 VVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQP-  169 (277)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCS-
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCCC-
Confidence            875       5899999999864                   12    2444555566654246899999988765432 


Q ss_pred             ccCCccchhhHhHhhhhHHH
Q 040431          123 EMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~  142 (157)
                          ....|..+|.+.+.+.
T Consensus       170 ----~~~~Y~asKaa~~~~~  185 (277)
T 3tsc_A          170 ----FMIHYTASKHAVTGLA  185 (277)
T ss_dssp             ----SCHHHHHHHHHHHHHH
T ss_pred             ----CchhhHHHHHHHHHHH
Confidence                3567999998776663

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.72  E-value=1.9e-16  Score=118.57  Aligned_cols=126  Identities=13%  Similarity=0.142  Sum_probs=92.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh-------cCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF-------KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~-------~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+ ++.       ...++.++.+|++|++++.++++
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRK-----LERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            4789999999999999999999999999999998     4443322 111       24578999999999999988876


Q ss_pred             -------CcCEEEEcCCCcc-------------------hHHHHHHHHHHHH----hcCCccEEEeccccccccCCCccC
Q 040431           76 -------QVDVVISTVGHTL-------------------LADQVKIIAAIKE----AEGASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 -------~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~----~~~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                             ++|+||||||...                   +.++.++++++..    .+ .++||++||.. +...     
T Consensus        93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~-~~~~-----  165 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPT-KAGF-----  165 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCC-TTCC-----
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCeEEEEEeec-ccCC-----
Confidence                   4899999999532                   3345556666443    33 47899999976 3221     


Q ss_pred             CccchhhHhHhhhhHH
Q 040431          126 TTLDMLEMTELIDQKI  141 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~  141 (157)
                      .....|..+|.+...+
T Consensus       166 ~~~~~Y~~sK~a~~~~  181 (303)
T 1yxm_A          166 PLAVHSGAARAGVYNL  181 (303)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHH
Confidence            2345677777766555

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.72  E-value=2.9e-16  Score=120.16  Aligned_cols=135  Identities=10%  Similarity=0.063  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc--hhh-Hhhh--hcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS--KSQ-LLDH--FKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~--~~~-~~~~--~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+....+..  .++ ..++  ....++.++.+|++|++++.++++   
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~  124 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAI  124 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999986543211  111 1111  123568899999999999988876   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHHH----HHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LADQ----VKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~~----~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+||||||...                   +.++    +.+++.+++.+ .++||++||...+...   .....
T Consensus       125 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~~~~~~~---~~~~~  200 (346)
T 3kvo_A          125 KKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK-VAHILNISPPLNLNPV---WFKQH  200 (346)
T ss_dssp             HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS-SCEEEEECCCCCCCGG---GTSSS
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHcCCC---CCCCc
Confidence                7999999999753                   2233    34444445555 6899999998766431   12346


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       201 ~~Y~aSKaal~~l~  214 (346)
T 3kvo_A          201 CAYTIAKYGMSMYV  214 (346)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            68999999876663

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.72  E-value=6.4e-17  Score=121.11  Aligned_cols=134  Identities=13%  Similarity=0.035  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+......+....+.+....++.++.+|++|++++.++++       +
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  128 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGG  128 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999888632110111111112234578899999999999888775       6


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|++|||||...                    +.++..+++++.... +.++||++||..++...     .....|..+|
T Consensus       129 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~-----~~~~~Y~asK  203 (294)
T 3r3s_A          129 LDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS-----PHLLDYAATK  203 (294)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC-----TTCHHHHHHH
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC-----CCchHHHHHH
Confidence            899999999742                    334556666665543 12589999998887643     2356799999


Q ss_pred             hhhhHHH
Q 040431          136 LIDQKIF  142 (157)
Q Consensus       136 ~~~~~~~  142 (157)
                      .+.+.+.
T Consensus       204 aa~~~l~  210 (294)
T 3r3s_A          204 AAILNYS  210 (294)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9776663

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.72  E-value=4.4e-16  Score=115.87  Aligned_cols=134  Identities=10%  Similarity=0.068  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC-----------CCchhhHhh-hh--cCCCeEEEEccCCChHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS-----------GPSKSQLLD-HF--KNLGVNLVIGDVLNHES   69 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~-----------~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~   69 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+....           ..++++.+. +.  ...++.++.+|++|+++
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   90 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYDA   90 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHHH
Confidence            47899999999999999999999999999999873211           122232221 11  23578999999999999


Q ss_pred             HHHHhc-------CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           70 LVKAIK-------QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        70 ~~~~~~-------~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      +.++++       ++|++|||||...                        ...++.+++.+.+.+..++||++||..++.
T Consensus        91 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  170 (286)
T 3uve_A           91 LKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLK  170 (286)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhhcc
Confidence            988876       6999999999743                        122444555555544246899999988775


Q ss_pred             cCCCccCCccchhhHhHhhhhHHH
Q 040431          119 SLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ..+     ....|..+|.+.+.+.
T Consensus       171 ~~~-----~~~~Y~asKaa~~~~~  189 (286)
T 3uve_A          171 AYP-----HTGHYVAAKHGVVGLM  189 (286)
T ss_dssp             CCT-----TCHHHHHHHHHHHHHH
T ss_pred             CCC-----CccHHHHHHHHHHHHH
Confidence            432     3567999998776663

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.72  E-value=1.4e-16  Score=119.51  Aligned_cols=128  Identities=12%  Similarity=0.143  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CC---CeEEEEccCCChHHHHHHhc--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NL---GVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~---~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++.+.+ ++..  ..   ++.++.+|++|++++.++++  
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  100 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN-----EDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT  100 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999998     4444322 1211  22   68899999999999988876  


Q ss_pred             -----CcCEEEEcCCCcc---------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccC
Q 040431           76 -----QVDVVISTVGHTL---------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 -----~~d~vv~~a~~~~---------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                           ++|+||||||...                     .    ..++.+++.+.+.+  ++||++||..++...    .
T Consensus       101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~~~~~~~----~  174 (297)
T 1xhl_A          101 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQA----H  174 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSSC----C
T ss_pred             HHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCchhccCC----C
Confidence                 6899999999642                     1    12334444444443  799999998776532    1


Q ss_pred             CccchhhHhHhhhhHHH
Q 040431          126 TTLDMLEMTELIDQKIF  142 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~  142 (157)
                      .....|..+|.+.+.+.
T Consensus       175 ~~~~~Y~asKaa~~~l~  191 (297)
T 1xhl_A          175 SGYPYYACAKAALDQYT  191 (297)
T ss_dssp             TTSHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHH
Confidence            23567999998876663

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.72  E-value=9.8e-17  Score=117.91  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=94.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     +++.+.+. +.  ...++.++.+|++|++++.++++     
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGATVYITGRH-----LDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDRE   79 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999988     44433221 11  13468889999999998887754     


Q ss_pred             ---CcCEEEEcCC--Cc-------c-----------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           76 ---QVDVVISTVG--HT-------L-----------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        76 ---~~d~vv~~a~--~~-------~-----------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                         ++|++|||||  ..       .                 ..+    ++.+++.+.+.+ .++||++||..++..   
T Consensus        80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~---  155 (260)
T 2qq5_A           80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG-QGLIVVISSPGSLQY---  155 (260)
T ss_dssp             HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT-CCEEEEECCGGGTSC---
T ss_pred             cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC-CcEEEEEcChhhcCC---
Confidence               4699999994  21       0                 111    344555565665 689999999877642   


Q ss_pred             ccCCccchhhHhHhhhhHHHH
Q 040431          123 EMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~  143 (157)
                         .+...|..+|.+.+.+..
T Consensus       156 ---~~~~~Y~asK~a~~~~~~  173 (260)
T 2qq5_A          156 ---MFNVPYGVGKAACDKLAA  173 (260)
T ss_dssp             ---CSSHHHHHHHHHHHHHHH
T ss_pred             ---CCCCchHHHHHHHHHHHH
Confidence               234689999998777633

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.72  E-value=1.3e-16  Score=118.69  Aligned_cols=130  Identities=12%  Similarity=0.072  Sum_probs=90.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|++    .+..+.+ ++.  ...++.++.+|++|++++.++++     
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGFDIAITGIGD----AEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC----HHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999998742    3333222 121  24578999999999999888876     


Q ss_pred             --CcCEEEEcCCCcc---------------------hHH----HHHHHHHHHHhcC--CccEEEeccccccccCCCccCC
Q 040431           76 --QVDVVISTVGHTL---------------------LAD----QVKIIAAIKEAEG--ASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 --~~d~vv~~a~~~~---------------------~~~----~~~l~~~~~~~~~--~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                        ++|++|||||...                     +.+    ++.+++.+.+.+.  .++||++||..++...     .
T Consensus       105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~-----~  179 (280)
T 4da9_A          105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS-----P  179 (280)
T ss_dssp             HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC------------
T ss_pred             cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC-----C
Confidence              7899999999831                     222    4455555555431  3589999998776432     2


Q ss_pred             ccchhhHhHhhhhHHH
Q 040431          127 TLDMLEMTELIDQKIF  142 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~~  142 (157)
                      ....|..+|.+.+.+.
T Consensus       180 ~~~~Y~asKaa~~~l~  195 (280)
T 4da9_A          180 ERLDYCMSKAGLAAFS  195 (280)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH
Confidence            3467999999877663

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.72  E-value=2.4e-17  Score=132.06  Aligned_cols=119  Identities=15%  Similarity=0.158  Sum_probs=87.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|+|+|||||||||++|++.|++.|++|++++|+....                ..+.+|+.+.  +.+++.++|+|||+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~----------------~~v~~d~~~~--~~~~l~~~D~Vih~  208 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP----------------GKRFWDPLNP--ASDLLDGADVLVHL  208 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT----------------TCEECCTTSC--CTTTTTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc----------------cceeecccch--hHHhcCCCCEEEEC
Confidence            67999999999999999999999999999999985432                1256677643  35567799999999


Q ss_pred             CCCcc----------------hHHHHHHHHH-HHHhcCCccEEEeccccccc-cCC-----CccCCccchhhHhHhhhhH
Q 040431           84 VGHTL----------------LADQVKIIAA-IKEAEGASRGTLRTQKGKMS-SLS-----SEMTTTLDMLEMTELIDQK  140 (157)
Q Consensus        84 a~~~~----------------~~~~~~l~~~-~~~~~~~~~~v~~Ss~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~  140 (157)
                      |+...                +.++.+++++ +.+.+ +++|||+||.++|+ ...     ...+.+...|...+...+.
T Consensus       209 A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~-~~r~V~~SS~~vyg~~~~~~~~~E~~~~~~~~y~~~~~~~E~  287 (516)
T 3oh8_A          209 AGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQ-CTTMISASAVGFYGHDRGDEILTEESESGDDFLAEVCRDWEH  287 (516)
T ss_dssp             CCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSS-CCEEEEEEEGGGGCSEEEEEEECTTSCCCSSHHHHHHHHHHH
T ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeCcceEecCCCCCCccCCCCCCCcChHHHHHHHHHH
Confidence            99751                5568899998 45555 78999999999997 221     1112345566666655444


Q ss_pred             H
Q 040431          141 I  141 (157)
Q Consensus       141 ~  141 (157)
                      .
T Consensus       288 ~  288 (516)
T 3oh8_A          288 A  288 (516)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.72  E-value=3.7e-16  Score=118.15  Aligned_cols=134  Identities=11%  Similarity=0.084  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCC-------CchhhHh-hh--hcCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG-------PSKSQLL-DH--FKNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~-------~~~~~~~-~~--~~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+.....       .++++.. +.  .....+.++.+|++|++++.++
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  125 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAV  125 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence            478999999999999999999999999999988643211       2222211 11  1245789999999999999888


Q ss_pred             hc-------CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCc
Q 040431           74 IK-------QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        74 ~~-------~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~  123 (157)
                      ++       ++|++|||||...                   +.+    ++.+++.+.+.+..++||++||..++...   
T Consensus       126 ~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~---  202 (317)
T 3oec_A          126 VDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGA---  202 (317)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCC---
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCC---
Confidence            76       6899999999764                   222    44455555555324689999998776543   


Q ss_pred             cCCccchhhHhHhhhhHHH
Q 040431          124 MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (157)
                        .....|..+|.+.+.+.
T Consensus       203 --~~~~~Y~asKaa~~~l~  219 (317)
T 3oec_A          203 --PGQSHYAASKHGVQGLM  219 (317)
T ss_dssp             --TTBHHHHHHHHHHHHHH
T ss_pred             --CCCcchHHHHHHHHHHH
Confidence              23568999998776663

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.71  E-value=1.1e-16  Score=118.04  Aligned_cols=128  Identities=15%  Similarity=0.057  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|+++.+..    .++.+. .++.  ...++.++.+|++|++++.++++     
T Consensus        26 ~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           26 SRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRD----AAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc----hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999998776542    222221 1211  24578999999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHH----H-HhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAI----K-EAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~----~-~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|+||||||...                   ..++..+++++    . +.+ .++||++||..++...     ....
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~  175 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ-GGRIITLSSVSGVMGN-----RGQV  175 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCHHHHHCC-----TTCH
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcchHhccCC-----CCCc
Confidence              6999999999754                   22344444443    2 444 6899999998776543     2456


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+.+.+
T Consensus       176 ~Y~asKaa~~~~  187 (267)
T 4iiu_A          176 NYSAAKAGIIGA  187 (267)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            899999866555

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.71  E-value=3.1e-16  Score=116.16  Aligned_cols=131  Identities=11%  Similarity=0.084  Sum_probs=95.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++++.    .++.+.+ .+.  ....+.++.+|++|++++.++++     
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA----AERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999987763    2222222 111  24578899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhH
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                        ++|++|||||...                   ..++..+++++...- ..++||++||..+....    ......|..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~----~~~~~~Y~a  182 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVP----WPGISLYSA  182 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCC----STTCHHHHH
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCC----CCCchHHHH
Confidence              7899999999753                   334555666655441 14689999986543211    134668999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       183 sKaa~~~l~  191 (271)
T 3v2g_A          183 SKAALAGLT  191 (271)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999776663

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.71  E-value=1.6e-16  Score=115.54  Aligned_cols=126  Identities=13%  Similarity=0.022  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--------   75 (157)
                      +++++||||+|+||++++++|+++|++|++++|+.....            ....++.+|++|++++.++++        
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   74 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLLGD   74 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999854321            135677899999999888765        


Q ss_pred             -CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhH
Q 040431           76 -QVDVVISTVGHTL--------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        76 -~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                       ++|++|||||...                    ..++..+++++...- ..++||++||..++...     .....|..
T Consensus        75 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~a  149 (241)
T 1dhr_A           75 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT-----PGMIGYGM  149 (241)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----TTBHHHHH
T ss_pred             CCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC-----CCchHHHH
Confidence             6899999999631                    223455555655431 02589999998876532     24568999


Q ss_pred             hHhhhhHHHHHHHh
Q 040431          134 TELIDQKIFIYFWG  147 (157)
Q Consensus       134 ~~~~~~~~~~~~~~  147 (157)
                      +|.+.+.+ ...+.
T Consensus       150 sK~a~~~~-~~~la  162 (241)
T 1dhr_A          150 AKGAVHQL-CQSLA  162 (241)
T ss_dssp             HHHHHHHH-HHHHT
T ss_pred             HHHHHHHH-HHHHH
Confidence            99988777 44444

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.71  E-value=1.9e-16  Score=114.65  Aligned_cols=120  Identities=17%  Similarity=0.110  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~~   77 (157)
                      +++++||||+|+||++++++|+++|++|++++|+.. .             ..+.++.+|++|++++.++++      ++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   67 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARAQEEAPL   67 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence            678999999999999999999999999999999843 1             235889999999999998887      78


Q ss_pred             CEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc---------CCccEEEeccccccccCCCccC
Q 040431           78 DVVISTVGHTL-----------------------LADQVKIIAAIKEAE---------GASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        78 d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~---------~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                      |++||+||...                       ..++..+++++....         ..++||++||..++...     
T Consensus        68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----  142 (242)
T 1uay_A           68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ-----  142 (242)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC-----
T ss_pred             eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC-----
Confidence            99999999642                       233555566554431         01389999998877542     


Q ss_pred             CccchhhHhHhhhhHHH
Q 040431          126 TTLDMLEMTELIDQKIF  142 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~  142 (157)
                      .+...|..+|.+.+.+.
T Consensus       143 ~~~~~Y~~sK~a~~~~~  159 (242)
T 1uay_A          143 IGQAAYAASKGGVVALT  159 (242)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHH
Confidence            24568899998776663

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.71  E-value=5.1e-16  Score=113.57  Aligned_cols=121  Identities=16%  Similarity=0.167  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC-ChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL-NHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~~~~d~vv~   82 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     ++..+   +.  ..+.++ +|+. +.+.+.+.+.++|+|||
T Consensus        19 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~-----~~~~~---~~--~~~~~~-~D~~~~~~~~~~~~~~iD~lv~   87 (249)
T 1o5i_A           19 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARN-----EELLK---RS--GHRYVV-CDLRKDLDLLFEKVKEVDILVL   87 (249)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHH---HT--CSEEEE-CCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC-----HHHHH---hh--CCeEEE-eeHHHHHHHHHHHhcCCCEEEE
Confidence            5789999999999999999999999999999998     33322   22  256667 9992 33344444448999999


Q ss_pred             cCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhh
Q 040431           83 TVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQ  139 (157)
Q Consensus        83 ~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (157)
                      |||...                       ...++.+++.+.+.+ .++||++||..++...     .....|..+|.+.+
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~sK~a~~  161 (249)
T 1o5i_A           88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVISPI-----ENLYTSNSARMALT  161 (249)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----TTBHHHHHHHHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchHhcCCC-----CCCchHHHHHHHHH
Confidence            999643                       122556777787777 7899999998887543     23567888888766


Q ss_pred             HH
Q 040431          140 KI  141 (157)
Q Consensus       140 ~~  141 (157)
                      .+
T Consensus       162 ~~  163 (249)
T 1o5i_A          162 GF  163 (249)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.71  E-value=2.4e-16  Score=116.54  Aligned_cols=131  Identities=12%  Similarity=0.068  Sum_probs=95.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hh--hcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DH--FKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|+++++++    .+..+.+ ++  ....++.++.+|++|++++.++++     
T Consensus        18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANS----TKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999988763    2222221 11  124578999999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhH
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                        ++|++|||||...                   +.++..+++++...- ..++||++||......    .......|..
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----~~~~~~~Y~a  169 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF----SVPKHSLYSG  169 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC----CCTTCHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC----CCCCCchhHH
Confidence              6899999999854                   334555666655542 1258999999763211    1234568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       170 sKaa~~~~~  178 (270)
T 3is3_A          170 SKGAVDSFV  178 (270)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998776663

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.71  E-value=1.5e-16  Score=117.64  Aligned_cols=131  Identities=9%  Similarity=0.035  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh---hhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD---HFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|+++.+..    .+..+.+.   .....++.++.+|++|++++.++++     
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGFTVVINYAGK----AAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSC----SHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999886553    33333221   1224578899999999999988876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhH
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                        ++|++|||||...                   +.++..+++++...- ..++||++||..++...     .....|..
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~a  177 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH-----PSYGIYAA  177 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC-----TTCHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC-----CCchHHHH
Confidence              6899999999864                   333455555554431 13589999998776532     23568999


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+.+.+..
T Consensus       178 sKaa~~~l~~  187 (267)
T 3u5t_A          178 AKAGVEAMTH  187 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998777633

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.71  E-value=1.7e-16  Score=115.05  Aligned_cols=128  Identities=16%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |+ .++++||||+|+||++++++|++.|++|++++|+.....            ....++.+|++|++++.++++     
T Consensus         1 m~-~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~   67 (236)
T 1ooe_A            1 MS-SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASS   67 (236)
T ss_dssp             -C-CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CC-CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHH
Confidence            44 678999999999999999999999999999999854321            135677899999998887765     


Q ss_pred             ----CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccch
Q 040431           76 ----QVDVVISTVGHTL--------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 ----~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                          ++|+||||||...                    +.++..+++++...- ..++||++||..++...     .....
T Consensus        68 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~  142 (236)
T 1ooe_A           68 LQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT-----PSMIG  142 (236)
T ss_dssp             HTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----TTBHH
T ss_pred             hCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCC-----CCcHH
Confidence                6899999999632                    223445556655531 02589999998876532     34568


Q ss_pred             hhHhHhhhhHHHHHHHh
Q 040431          131 LEMTELIDQKIFIYFWG  147 (157)
Q Consensus       131 ~~~~~~~~~~~~~~~~~  147 (157)
                      |..+|.+.+.+ ...+.
T Consensus       143 Y~~sK~a~~~~-~~~la  158 (236)
T 1ooe_A          143 YGMAKAAVHHL-TSSLA  158 (236)
T ss_dssp             HHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHH-HHHHH
Confidence            99999988777 44443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.71  E-value=4e-16  Score=117.00  Aligned_cols=134  Identities=10%  Similarity=0.100  Sum_probs=96.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC-------CCchhhH-hhh--hcCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS-------GPSKSQL-LDH--FKNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~-------~~~~~~~-~~~--~~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+....       ..++++. ..+  ....++.++.+|++|++++.++
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~  107 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAA  107 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence            47899999999999999999999999999999874311       1222221 111  1245789999999999999888


Q ss_pred             hc-------CcCEEEEcCCCcc--------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           74 IK-------QVDVVISTVGHTL--------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        74 ~~-------~~d~vv~~a~~~~--------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      ++       ++|++|||||...                    +.+    ++.+++.+.+.+..++||++||..++...  
T Consensus       108 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~--  185 (299)
T 3t7c_A          108 VDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGA--  185 (299)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSCC--
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC--
Confidence            75       6999999999643                    222    34444444444325799999998877543  


Q ss_pred             ccCCccchhhHhHhhhhHHH
Q 040431          123 EMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~  142 (157)
                         .....|..+|.+.+.+.
T Consensus       186 ---~~~~~Y~asKaa~~~l~  202 (299)
T 3t7c_A          186 ---ENIGNYIASKHGLHGLM  202 (299)
T ss_dssp             ---TTCHHHHHHHHHHHHHH
T ss_pred             ---CCcchHHHHHHHHHHHH
Confidence               23568999998776663

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.71  E-value=3.3e-16  Score=116.23  Aligned_cols=127  Identities=15%  Similarity=0.140  Sum_probs=94.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~~   77 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .++.+.+.+....++.++.+|++|++++.++++      ++
T Consensus        30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~i  104 (281)
T 3ppi_A           30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLA-----AEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRL  104 (281)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----hHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            3579999999999999999999999999999998     555554443335679999999999999998876      58


Q ss_pred             CEEEEc-CCCcc------------------------hHHHHHHHHH----HHH------hcCCccEEEeccccccccCCC
Q 040431           78 DVVIST-VGHTL------------------------LADQVKIIAA----IKE------AEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        78 d~vv~~-a~~~~------------------------~~~~~~l~~~----~~~------~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      |++||| ++...                        ..++..++++    +.+      .+ .++||++||..++...+ 
T Consensus       105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~-  182 (281)
T 3ppi_A          105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGE-RGALVLTASIAGYEGQI-  182 (281)
T ss_dssp             EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSC-CEEEEEECCGGGTSCCT-
T ss_pred             CeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCC-CeEEEEEecccccCCCC-
Confidence            999999 44321                        2223333333    333      22 46899999988775432 


Q ss_pred             ccCCccchhhHhHhhhhHH
Q 040431          123 EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (157)
                          ....|..+|.+.+.+
T Consensus       183 ----~~~~Y~asKaa~~~~  197 (281)
T 3ppi_A          183 ----GQTAYAAAKAGVIGL  197 (281)
T ss_dssp             ----TCHHHHHHHHHHHHH
T ss_pred             ----CCcccHHHHHHHHHH
Confidence                456899999877666

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.70  E-value=1.1e-16  Score=117.38  Aligned_cols=124  Identities=13%  Similarity=0.129  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~~   77 (157)
                      .++++||||+|+||++++++|++.|++|++++|+     .+...  ++ ....+.++.+|++|++++.++++      ++
T Consensus         9 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~--~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            9 DAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR-----GEDVV--AD-LGDRARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS-----CHHHH--HH-TCTTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc-----hHHHH--Hh-cCCceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999985     32221  12 24578999999999999988876      79


Q ss_pred             CEEEEcCCCcc-----------------------hHHHHHHHHH----HHH--------hcCCccEEEeccccccccCCC
Q 040431           78 DVVISTVGHTL-----------------------LADQVKIIAA----IKE--------AEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        78 d~vv~~a~~~~-----------------------~~~~~~l~~~----~~~--------~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                      |++|||||...                       ..++..++++    +.+        .+ .++||++||..++...  
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~--  157 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEE-RGVIINTASVAAFDGQ--  157 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCC-SEEEEEECCCC--CCH--
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCC-CcEEEEEcchhhcCCC--
Confidence            99999999642                       2223333443    333        22 4689999998776432  


Q ss_pred             ccCCccchhhHhHhhhhHH
Q 040431          123 EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (157)
                         .....|..+|.+.+.+
T Consensus       158 ---~~~~~Y~asKaa~~~~  173 (257)
T 3tl3_A          158 ---IGQAAYSASKGGVVGM  173 (257)
T ss_dssp             ---HHHHHHHHHHHHHHHH
T ss_pred             ---CCCccHHHHHHHHHHH
Confidence               2356788898876665

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.70  E-value=7.4e-16  Score=113.51  Aligned_cols=128  Identities=10%  Similarity=0.057  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .|+++||||+++||+++++.|++.|++|++++|+...  .+..+.+.+. ..++.++.+|++|+++++++++       +
T Consensus         7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~--~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~   83 (258)
T 4gkb_A            7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPD--GAFLDALAQR-QPRATYLPVELQDDAQCRDAVAQTIATFGR   83 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCC--HHHHHHHHHH-CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCccc--HHHHHHHHhc-CCCEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999998443  1222222222 4578899999999999888765       6


Q ss_pred             cCEEEEcCCCcc----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           77 VDVVISTVGHTL----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        77 ~d~vv~~a~~~~----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      +|++|||||...                      ...++.+++.+++.+  ++||++||..+....+     ....|..+
T Consensus        84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~~~~-----~~~~Y~as  156 (258)
T 4gkb_A           84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR--GAIVNISSKTAVTGQG-----NTSGYCAS  156 (258)
T ss_dssp             CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTHHHHCCS-----SCHHHHHH
T ss_pred             CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEeehhhccCCC-----CchHHHHH
Confidence            999999999854                      333666777776654  7899999988765432     34578888


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      |.+...+
T Consensus       157 Kaav~~l  163 (258)
T 4gkb_A          157 KGAQLAL  163 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8765555

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.70  E-value=3.3e-16  Score=115.73  Aligned_cols=120  Identities=16%  Similarity=0.047  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.....             ....+.+|++|.+++.++++       +
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   94 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-------------ADLHLPGDLREAAYADGLPGAVAAGLGR   94 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC-------------CSEECCCCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-------------hhhccCcCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999998744321             11345789999988877765       6


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   +.+    ++.+++.+++.+ .++||++||..++...     .....|..
T Consensus        95 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~a  168 (266)
T 3uxy_A           95 LDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASCWGLRPG-----PGHALYCL  168 (266)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTBCC-----TTBHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHhCCCC-----CCChHHHH
Confidence            999999999864                   222    444555557766 6899999998776532     24568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       169 sKaa~~~l~  177 (266)
T 3uxy_A          169 TKAALASLT  177 (266)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999877663

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.70  E-value=5.1e-16  Score=114.31  Aligned_cols=132  Identities=9%  Similarity=0.049  Sum_probs=95.8

Q ss_pred             CCeEEEEcCCCc--chHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGY--IGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~--iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+  ||++++++|++.|++|++++|+...  .+..+.+ .+....++.++.+|++|++++.++++     
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL--EKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG--HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH--HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            478999999977  9999999999999999999887321  1222222 22233378999999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|++||+||...                       ..++..+++++...- ..++||++||..++...     ....
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~  159 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVM-----PNYN  159 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC-----TTTH
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccC-----CCcc
Confidence              6899999999752                       223445556655442 13589999998776543     2356


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       160 ~Y~asKaa~~~~~  172 (266)
T 3oig_A          160 VMGVAKASLDASV  172 (266)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            8999998776663

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=2.6e-16  Score=115.74  Aligned_cols=130  Identities=8%  Similarity=0.031  Sum_probs=95.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|+++++..    .+..+. .++.  ...++.++.+|++|++++.++++     
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGA----AEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSS----CHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999885553    222221 1222  24568999999999999988876     


Q ss_pred             --CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHhcC-CccEEEecccccc-ccCCCccCCccchh
Q 040431           76 --QVDVVISTVGHTL--------------------LADQVKIIAAIKEAEG-ASRGTLRTQKGKM-SSLSSEMTTTLDML  131 (157)
Q Consensus        76 --~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~~-~~~~v~~Ss~~~~-~~~~~~~~~~~~~~  131 (157)
                        ++|++|||||...                    ..++..+++++...-. .++||++||..++ ...     .....|
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-----~~~~~Y  158 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGG-----PGALAY  158 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCS-----TTCHHH
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCC-----CCcHHH
Confidence              6899999998652                    3345566666655420 2489999998776 221     235689


Q ss_pred             hHhHhhhhHHH
Q 040431          132 EMTELIDQKIF  142 (157)
Q Consensus       132 ~~~~~~~~~~~  142 (157)
                      ..+|.+.+.+.
T Consensus       159 ~asKaa~~~l~  169 (259)
T 3edm_A          159 ATSKGAVMTFT  169 (259)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877663

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.69  E-value=6.1e-16  Score=114.14  Aligned_cols=121  Identities=14%  Similarity=0.122  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .|+++||||+++||+++++.|++.|++|++.+|+....            .....++++|++|++++.++++       +
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   78 (261)
T 4h15_A           11 GKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG------------LPEELFVEADLTTKEGCAIVAEATRQRLGG   78 (261)
T ss_dssp             TCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT------------SCTTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred             CCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC------------CCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            37899999999999999999999999999999974321            1223468899999999888765       5


Q ss_pred             cCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           77 VDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      +|++|||||...                         ...++.+++.+++.+ .++||++||..+....+.    ....|
T Consensus        79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Iv~isS~~~~~~~~~----~~~~Y  153 (261)
T 4h15_A           79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG-SGVVVHVTSIQRVLPLPE----STTAY  153 (261)
T ss_dssp             CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCTT----TCHHH
T ss_pred             CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC-CceEEEEEehhhccCCCC----ccHHH
Confidence            899999999642                         333777888888887 789999999876543221    24567


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+...+
T Consensus       154 ~asKaal~~l  163 (261)
T 4h15_A          154 AAAKAALSTY  163 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777765554

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.69  E-value=2.2e-16  Score=115.39  Aligned_cols=132  Identities=13%  Similarity=0.067  Sum_probs=95.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhhh--cCCCeEEEEccCCChHHHHHHhcC-
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDHF--KNLGVNLVIGDVLNHESLVKAIKQ-   76 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~--~~~~v~~~~~D~~~~~~~~~~~~~-   76 (157)
                      |.+.++++||||+|+||++++++|++.|++|+++.+.+    .++.+. ..+.  ....+.++.+|++|.+++.++++. 
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   79 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNR----KEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSL   79 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC----SHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHH
Confidence            33467999999999999999999999999998875542    333222 1221  235688899999999988877652 


Q ss_pred             ------------cCEEEEcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCc
Q 040431           77 ------------VDVVISTVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSE  123 (157)
Q Consensus        77 ------------~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~  123 (157)
                                  +|++|||||...                   ..++..+++++...  + .++||++||..++...+  
T Consensus        80 ~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~iv~isS~~~~~~~~--  156 (255)
T 3icc_A           80 DNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD-NSRIINISSAATRISLP--  156 (255)
T ss_dssp             HHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-EEEEEEECCGGGTSCCT--
T ss_pred             HHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC-CCEEEEeCChhhccCCC--
Confidence                        899999999854                   23345555555543  2 36899999987765432  


Q ss_pred             cCCccchhhHhHhhhhHHH
Q 040431          124 MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (157)
                         ....|..+|.+.+.+.
T Consensus       157 ---~~~~Y~asKaa~~~~~  172 (255)
T 3icc_A          157 ---DFIAYSMTKGAINTMT  172 (255)
T ss_dssp             ---TBHHHHHHHHHHHHHH
T ss_pred             ---CcchhHHhHHHHHHHH
Confidence               3568999998776663

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.69  E-value=2.6e-16  Score=114.63  Aligned_cols=123  Identities=11%  Similarity=0.165  Sum_probs=94.5

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHh-CCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----C
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----Q   76 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~   76 (157)
                      ++++++||||+|+||++++++|++ .|+.|++++|+....            ...+.++.+|++|++++.++++     +
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   70 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS------------AENLKFIKADLTKQQDITNVLDIIKNVS   70 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC------------CTTEEEEECCTTCHHHHHHHHHHTTTCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc------------cccceEEecCcCCHHHHHHHHHHHHhCC
Confidence            467899999999999999999999 789999988874321            2356889999999999998886     6


Q ss_pred             cCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           77 VDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      +|++|||||...                   ..++..+++++...- ..++||++||..++...     .....|..+|.
T Consensus        71 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-----~~~~~Y~asKa  145 (244)
T 4e4y_A           71 FDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK-----PNSFAYTLSKG  145 (244)
T ss_dssp             EEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC-----TTBHHHHHHHH
T ss_pred             CCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC-----CCCchhHHHHH
Confidence            899999999853                   333555666655442 02489999998877543     23568999999


Q ss_pred             hhhHHH
Q 040431          137 IDQKIF  142 (157)
Q Consensus       137 ~~~~~~  142 (157)
                      +.+.+.
T Consensus       146 a~~~~~  151 (244)
T 4e4y_A          146 AIAQMT  151 (244)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877763

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.69  E-value=1.2e-15  Score=113.62  Aligned_cols=131  Identities=8%  Similarity=0.030  Sum_probs=95.2

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  |+||+++++.|++.|++|++++|+.. . .+..+.+.... .++.++.+|++|++++.++++      
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~-~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-L-EKRVREIAKGF-GSDLVVKCDVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-G-HHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-H-HHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999  99999999999999999999999842 1 12233332221 247889999999999988876      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCccc
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                       ++|+||||||...                       +.++..+++++...-  ..++||++||..++...     ....
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~  172 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV-----PHYN  172 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC-----TTTT
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC-----CCcc
Confidence             6899999999641                       223555666655442  13799999998776432     2345


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       173 ~Y~~sK~a~~~~~  185 (285)
T 2p91_A          173 VMGIAKAALESTV  185 (285)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7999999877663

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.69  E-value=6.4e-16  Score=112.94  Aligned_cols=129  Identities=8%  Similarity=0.036  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      .|+++||||+++||+++++.|++.|++|++.+|+..   .+..+.+.+. ..++.++.+|++|+++++++++  ++|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~---~~~~~~~~~~-g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP---DETLDIIAKD-GGNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC---HHHHHHHHHT-TCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH---HHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            578999999999999999999999999999998732   2223333332 4578899999999999888776  699999


Q ss_pred             EcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhh
Q 040431           82 STVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELID  138 (157)
Q Consensus        82 ~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~  138 (157)
                      ||||...                       ...++.+++.+.+.+..++||++||..+....+     ....|..+|...
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~-----~~~~Y~asKaav  159 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGI-----RVPSYTAAKHGV  159 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCS-----SCHHHHHHHHHH
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCC-----CChHHHHHHHHH
Confidence            9999865                       333667777787765347999999987764322     245677777755


Q ss_pred             hHH
Q 040431          139 QKI  141 (157)
Q Consensus       139 ~~~  141 (157)
                      ..+
T Consensus       160 ~~l  162 (247)
T 4hp8_A          160 AGL  162 (247)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.69  E-value=1.8e-16  Score=117.60  Aligned_cols=125  Identities=14%  Similarity=0.122  Sum_probs=94.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .|+++||||+++||+++++.|++.|++|++.+|+     .++++...+....++..+++|++|+++++++++       +
T Consensus        29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~-----~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRR-----KDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998     666654433335678899999999999988875       5


Q ss_pred             cCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                   ..+    ++.+++.+++   .+++|++||..+....+     ....|..
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~---~G~IInisS~~~~~~~~-----~~~~Y~a  175 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR---GSSVVLTGSTAGSTGTP-----AFSVYAA  175 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE---EEEEEEECCGGGGSCCT-----TCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh---CCeEEEEeehhhccCCC-----CchHHHH
Confidence            899999999865                   222    3333333332   25799999987764332     3457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       176 sKaav~~l  183 (273)
T 4fgs_A          176 SKAALRSF  183 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876655

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.69  E-value=7.5e-16  Score=113.28  Aligned_cols=131  Identities=13%  Similarity=0.079  Sum_probs=95.1

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  |+||++++++|++.|++|++++|+.. . .+..+.+.... ..+.++.+|++|++++.++++      
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~-~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-L-RPEAEKLAEAL-GGALLFRADVTQDEELDALFAGVKEAF   84 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-G-HHHHHHHHHHT-TCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-H-HHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4789999999  99999999999999999999998732 1 12233332221 247889999999999988876      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|+||||||...                       ..++..+++++...- ..++||++||..++...     .....
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~  159 (261)
T 2wyu_A           85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV-----PKYNV  159 (261)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-----TTCHH
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC-----CCchH
Confidence             6899999999642                       223555666665541 02589999997776432     23567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       160 Y~asK~a~~~~~  171 (261)
T 2wyu_A          160 MAIAKAALEASV  171 (261)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998877663

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.68  E-value=9.9e-17  Score=117.35  Aligned_cols=123  Identities=11%  Similarity=0.026  Sum_probs=89.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcC----cCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ----VDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~----~d~   79 (157)
                      |++++||||+|+||+++++.|++.|++|++++|+....     +      .   . +.+|++|++++.++++.    +|+
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~-----~------~---~-~~~Dl~~~~~v~~~~~~~~~~id~   65 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV-----I------A---D-LSTAEGRKQAIADVLAKCSKGMDG   65 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-----E------C---C-TTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhh-----c------c---c-cccCCCCHHHHHHHHHHhCCCCCE
Confidence            46899999999999999999999999999999984321     1      0   1 56899999999998864    599


Q ss_pred             EEEcCCCcc------------hHHHHH----HHHHHHHhcCCccEEEeccccccccCCC---------------------
Q 040431           80 VISTVGHTL------------LADQVK----IIAAIKEAEGASRGTLRTQKGKMSSLSS---------------------  122 (157)
Q Consensus        80 vv~~a~~~~------------~~~~~~----l~~~~~~~~~~~~~v~~Ss~~~~~~~~~---------------------  122 (157)
                      ||||||...            ..++..    +++.+.+.+ .++||++||..++.....                     
T Consensus        66 lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
T 1fjh_A           66 LVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVE  144 (257)
T ss_dssp             EEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHH
T ss_pred             EEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEECChhhhccccccchhhhhhcccchhhhhhhhh
Confidence            999999764            223344    444444555 689999999888731100                     


Q ss_pred             --ccCCccchhhHhHhhhhHHH
Q 040431          123 --EMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       123 --~~~~~~~~~~~~~~~~~~~~  142 (157)
                        ........|..+|.+.+.+.
T Consensus       145 ~~~~~~~~~~Y~~sK~a~~~~~  166 (257)
T 1fjh_A          145 HAGEQGGNLAYAGSKNALTVAV  166 (257)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCccHHHHHHHHHHHHH
Confidence              01124567888888776663

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.68  E-value=9.6e-16  Score=112.89  Aligned_cols=131  Identities=11%  Similarity=0.042  Sum_probs=95.0

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  |+||++++++|++.|++|++++|+. .. .+..+.+.... ....++.+|++|++++.++++      
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~-~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KL-KGRVEEFAAQL-GSDIVLQCDVAEDASIDTMFAELGKVW   85 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TT-HHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HH-HHHHHHHHHhc-CCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3689999999  9999999999999999999999984 21 23333332221 234789999999999988876      


Q ss_pred             -CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccc
Q 040431           76 -QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                       ++|+||||||...                        +.++..+++++...- ..++||++||..++...     ....
T Consensus        86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~  160 (265)
T 1qsg_A           86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI-----PNYN  160 (265)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-----TTTT
T ss_pred             CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCC-----CCch
Confidence             6899999999642                        223455666665541 02589999998776432     2355


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       161 ~Y~~sK~a~~~~~  173 (265)
T 1qsg_A          161 VMGLAKASLEANV  173 (265)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7999999877764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.68  E-value=2.8e-16  Score=116.77  Aligned_cols=139  Identities=9%  Similarity=0.049  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCC-------CchhhHhh---hhcCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG-------PSKSQLLD---HFKNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~-------~~~~~~~~---~~~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.....       .+..+...   .....++.++.+|++|++++.++
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~   89 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRE   89 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence            478999999999999999999999999999998743221       11111111   12245789999999999999888


Q ss_pred             hc-------CcCEEEEcCCCcc-----------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCc-----
Q 040431           74 IK-------QVDVVISTVGHTL-----------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSE-----  123 (157)
Q Consensus        74 ~~-------~~d~vv~~a~~~~-----------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~-----  123 (157)
                      ++       ++|+||||||...                 ..++..+++++...- ..++||++||..++......     
T Consensus        90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~  169 (287)
T 3pxx_A           90 LANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPGAGG  169 (287)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC----
T ss_pred             HHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccccccc
Confidence            76       6999999999853                 334556666665542 14689999998776432111     


Q ss_pred             -cCCccchhhHhHhhhhHHH
Q 040431          124 -MTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~  142 (157)
                       .......|..+|.+.+.+.
T Consensus       170 ~~~~~~~~Y~asK~a~~~~~  189 (287)
T 3pxx_A          170 PQGPGGAGYSYAKQLVDSYT  189 (287)
T ss_dssp             -CHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccchHHHHHHHHHHHH
Confidence             0134567889998776663

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.68  E-value=1.1e-15  Score=113.10  Aligned_cols=131  Identities=9%  Similarity=0.075  Sum_probs=96.0

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  |+||++++++|++.|++|++++|+.. . .+..+.+.... .++.++.+|++|++++.++++      
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~-~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-L-EKRVRPIAQEL-NSPYVYELDVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-T-HHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-H-HHHHHHHHHhc-CCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4789999999  99999999999999999999999853 1 22333332222 247889999999999988876      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|++|||||...                       +.++..+++++...- ..++||++||..++...     .....
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~  157 (275)
T 2pd4_A           83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM-----AHYNV  157 (275)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-----TTCHH
T ss_pred             CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCC-----CCchh
Confidence             5899999999642                       233556666665541 02589999997765432     23567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       158 Y~asK~a~~~~~  169 (275)
T 2pd4_A          158 MGLAKAALESAV  169 (275)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999998876663

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.68  E-value=4e-16  Score=114.99  Aligned_cols=130  Identities=16%  Similarity=0.145  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|...+  .++++.+ ++..  ..++.++.+|++|++++.++++     
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKD--SDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGG--HHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccC--HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999876322  2233222 2221  3468899999999999998876     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHh--cCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEA--EGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~--~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                        ++|++|||||...                   ..++..+++++...  + .+++|++||..++...+     ....|.
T Consensus        89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-~g~iv~isS~~~~~~~~-----~~~~Y~  162 (262)
T 3ksu_A           89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNP-NGHIITIATSLLAAYTG-----FYSTYA  162 (262)
T ss_dssp             HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE-EEEEEEECCCHHHHHHC-----CCCC--
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcC-CCEEEEEechhhccCCC-----CCchhH
Confidence              6899999999753                   33355566665553  3 46899999987765322     244688


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       163 asKaa~~~l  171 (262)
T 3ksu_A          163 GNKAPVEHY  171 (262)
T ss_dssp             ---CHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876665

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.67  E-value=2.6e-15  Score=111.52  Aligned_cols=130  Identities=10%  Similarity=0.040  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCc--chHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGY--IGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~--iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+  ||.+++++|++.|++|++++|+.  . .+.++.+.... .++.++.+|++|++++.++++      
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~-~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--F-KDRVEKLCAEF-NPAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--C-HHHHHHHHGGG-CCSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--H-HHHHHHHHHhc-CCceEEEeecCCHHHHHHHHHHHHHHc
Confidence            478999999955  99999999999999999999984  1 34444443332 358899999999999988875      


Q ss_pred             -CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCcc
Q 040431           76 -QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                       ++|+||||||...                        +.++..+++++...-  ..++||++||..++...     ...
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~  176 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAM-----PSY  176 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCC-----TTT
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCC-----CCc
Confidence             5799999999752                        222444555544321  14799999998776542     245


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       177 ~~Y~asKaal~~~~  190 (280)
T 3nrc_A          177 NTMGVAKASLEATV  190 (280)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHH
Confidence            68999998776663

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.67  E-value=7.8e-16  Score=113.16  Aligned_cols=133  Identities=11%  Similarity=0.116  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            3 SKSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         3 ~~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +.|+++||||+|  +||.++++.|++.|++|++.+|+.... .+..+.+++....++.++++|++|++++.++++     
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSR-KELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            368999999876  899999999999999999999983221 111223334445578999999999999888775     


Q ss_pred             --CcCEEEEcCCCcch------------H-----------HHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccc
Q 040431           76 --QVDVVISTVGHTLL------------A-----------DQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 --~~d~vv~~a~~~~~------------~-----------~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                        ++|++|||||....            +           ....+..++... ...++||++||..+....+     ...
T Consensus        84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~-----~~~  158 (256)
T 4fs3_A           84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQ-----NYN  158 (256)
T ss_dssp             HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCT-----TTH
T ss_pred             hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcc-----cch
Confidence              69999999997530            0           011122222211 1136899999987664322     345


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+...+
T Consensus       159 ~Y~asKaal~~l  170 (256)
T 4fs3_A          159 VMGVAKASLEAN  170 (256)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            788888765554

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.67  E-value=1.6e-15  Score=110.99  Aligned_cols=126  Identities=14%  Similarity=0.085  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      +++++||||+|+||++++++|++.|++|++++|+.....              -..+.+|++|++++.++++       +
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~d~~d~~~v~~~~~~~~~~~g~   87 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA--------------DHSFTIKDSGEEEIKSVIEKINSKSIK   87 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS--------------SEEEECSCSSHHHHHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------------ccceEEEeCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999854321              1356889999999988876       4


Q ss_pred             cCEEEEcCCCcc--------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 VDVVISTVGHTL--------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 ~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      +|+||||||...                    +.++..+++++...- ..++||++||..++...     .....|..+|
T Consensus        88 iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~~Y~~sK  162 (251)
T 3orf_A           88 VDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRT-----SGMIAYGATK  162 (251)
T ss_dssp             EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----TTBHHHHHHH
T ss_pred             CCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCC-----CCCchhHHHH
Confidence            799999999632                    344556666665542 12589999998876532     3456899999


Q ss_pred             hhhhHHHHHHHhcc
Q 040431          136 LIDQKIFIYFWGRT  149 (157)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (157)
                      .+.+.+ ...++..
T Consensus       163 aa~~~~-~~~la~e  175 (251)
T 3orf_A          163 AATHHI-IKDLASE  175 (251)
T ss_dssp             HHHHHH-HHHHTST
T ss_pred             HHHHHH-HHHHHHH
Confidence            988777 4444433

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.67  E-value=3.8e-15  Score=111.44  Aligned_cols=131  Identities=11%  Similarity=0.071  Sum_probs=94.8

Q ss_pred             CCeEEEEcCCCc--chHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGY--IGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~--iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|+  ||++++++|++.|++|++++|+...  .+..+.+.... .++.++.+|++|++++.++++      
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL--KKRVEPLAEEL-GAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH--HHHHHHHHHHH-TCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH--HHHHHHHHHhc-CCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            468999999977  9999999999999999999887211  11222222211 358899999999999988876      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|++|||||...                       +.++..+++++...- ..++||++||..++...+     ....
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~-----~~~~  182 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMP-----NYNV  182 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCT-----TTTH
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCC-----chHH
Confidence             6899999999752                       233455555555432 136899999988765432     3568


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       183 Y~asKaa~~~l~  194 (293)
T 3grk_A          183 MGVAKAALEASV  194 (293)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998776663

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.67  E-value=4e-15  Score=111.45  Aligned_cols=131  Identities=14%  Similarity=0.031  Sum_probs=94.6

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+|  +||++++++|++.|++|++++|+...  .+..+.+.... ..+.++.+|++|++++.++++      
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETF--KKRVDPLAESL-GVKLTVPCDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG--HHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999997  99999999999999999999998321  12222222111 346889999999999998876      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccch
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                       ++|++|||||...                       ..++..+++++...- ..++||++||..++...     .....
T Consensus       107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~-----~~~~~  181 (296)
T 3k31_A          107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVV-----PHYNV  181 (296)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC-----TTTTH
T ss_pred             CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCC-----CCchh
Confidence             5899999999752                       233555556555432 13589999998776532     23567


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       182 Y~asKaal~~l~  193 (296)
T 3k31_A          182 MGVCKAALEASV  193 (296)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            899998776663

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.66  E-value=5.8e-16  Score=117.22  Aligned_cols=134  Identities=14%  Similarity=0.088  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC-----CCCCchhhH-hhhh--cCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST-----ISGPSKSQL-LDHF--KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~-----~~~~~~~~~-~~~~--~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+..     ....+..+. ..+.  ...++.++.+|++|++++.++++
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~  106 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLIQ  106 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            468999999999999999999999999999988621     000222222 2222  23468889999999999988876


Q ss_pred             -------CcCEEEEcCCCcc-------------------hHHHHHHHHH----HHHhcC-----CccEEEeccccccccC
Q 040431           76 -------QVDVVISTVGHTL-------------------LADQVKIIAA----IKEAEG-----ASRGTLRTQKGKMSSL  120 (157)
Q Consensus        76 -------~~d~vv~~a~~~~-------------------~~~~~~l~~~----~~~~~~-----~~~~v~~Ss~~~~~~~  120 (157)
                             ++|++|||||...                   +.++..++++    +.+.+.     .++||++||..++...
T Consensus       107 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~  186 (322)
T 3qlj_A          107 TAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGS  186 (322)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHCB
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHccCC
Confidence                   6899999999854                   2223333333    333210     1589999998776532


Q ss_pred             CCccCCccchhhHhHhhhhHHH
Q 040431          121 SSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                           .....|..+|.+.+.+.
T Consensus       187 -----~~~~~Y~asKaal~~l~  203 (322)
T 3qlj_A          187 -----VGQGNYSAAKAGIATLT  203 (322)
T ss_dssp             -----TTCHHHHHHHHHHHHHH
T ss_pred             -----CCCccHHHHHHHHHHHH
Confidence                 23568999999777663

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.66  E-value=2.2e-15  Score=120.66  Aligned_cols=133  Identities=14%  Similarity=0.133  Sum_probs=98.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcC--cC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQ--VD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~--~d   78 (157)
                      .++++||||+|+||.+++++|.++|++ |++++|+.... +...+..+++.  ..++.++.+|++|++++.++++.  +|
T Consensus       259 ~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~-~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld  337 (511)
T 2z5l_A          259 SGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEA-PGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN  337 (511)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGS-TTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCccc-HHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence            578999999999999999999999994 88888874322 11112222222  34688999999999999999975  99


Q ss_pred             EEEEcCCCcc-------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhHhHhhh
Q 040431           79 VVISTVGHTL-------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELID  138 (157)
Q Consensus        79 ~vv~~a~~~~-------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~  138 (157)
                      +|||+||...                   +.++.++.+++... + .++||++||..+....     .....|..+|.+.
T Consensus       338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~~~~V~~SS~a~~~g~-----~g~~~YaaaKa~l  411 (511)
T 2z5l_A          338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKG-LDAFVLFSSVTGTWGN-----AGQGAYAAANAAL  411 (511)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTT-CCCEEEEEEGGGTTCC-----TTBHHHHHHHHHH
T ss_pred             EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeCHHhcCCC-----CCCHHHHHHHHHH
Confidence            9999999764                   34456667666554 4 6899999998654322     2346888999888


Q ss_pred             hHHHH
Q 040431          139 QKIFI  143 (157)
Q Consensus       139 ~~~~~  143 (157)
                      +.+..
T Consensus       412 d~la~  416 (511)
T 2z5l_A          412 DALAE  416 (511)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77743

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.66  E-value=4.7e-16  Score=114.12  Aligned_cols=129  Identities=11%  Similarity=0.117  Sum_probs=93.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh---CCCcEEEEecCCCCCCCchhhHhh-hh----cCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK---AGHPTFVLVRESTISGPSKSQLLD-HF----KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~---~g~~v~~~~r~~~~~~~~~~~~~~-~~----~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .++++||||+|+||++++++|++   .|++|++++|+     .++.+.+. +.    ...++.++.+|++|++++.++++
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~   80 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARS-----ESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLS   80 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESC-----HHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCC-----HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHH
Confidence            57899999999999999999999   89999999998     44443222 21    13468899999999999887764


Q ss_pred             ---------CcC--EEEEcCCCcc----------------------hHHHHHHHHHHHHhc-----CCccEEEecccccc
Q 040431           76 ---------QVD--VVISTVGHTL----------------------LADQVKIIAAIKEAE-----GASRGTLRTQKGKM  117 (157)
Q Consensus        76 ---------~~d--~vv~~a~~~~----------------------~~~~~~l~~~~~~~~-----~~~~~v~~Ss~~~~  117 (157)
                               ++|  ++|||||...                      +.++..+++++...-     ..++||++||..++
T Consensus        81 ~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~  160 (259)
T 1oaa_A           81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL  160 (259)
T ss_dssp             HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred             HHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc
Confidence                     358  9999999631                      222444455544321     13679999998876


Q ss_pred             ccCCCccCCccchhhHhHhhhhHHH
Q 040431          118 SSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ...     .....|..+|.+.+.+.
T Consensus       161 ~~~-----~~~~~Y~asKaa~~~~~  180 (259)
T 1oaa_A          161 QPY-----KGWGLYCAGKAARDMLY  180 (259)
T ss_dssp             SCC-----TTCHHHHHHHHHHHHHH
T ss_pred             CCC-----CCccHHHHHHHHHHHHH
Confidence            532     23568999998877763

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.66  E-value=4.7e-16  Score=113.94  Aligned_cols=126  Identities=14%  Similarity=0.072  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHH----hcCc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKA----IKQV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~----~~~~   77 (157)
                      |++++||||+|+||++++++|++.|++|++++|+.     ++.+.+.+..  ..++..+  |..+.+.+.+.    +.++
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~i   73 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESF-----KQKDELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQV   73 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGG-----GSHHHHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCC
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999999999999983     3333222111  2233333  55444333222    2379


Q ss_pred             CEEEEcCCCc-c-------------------h----HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           78 DVVISTVGHT-L-------------------L----ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        78 d~vv~~a~~~-~-------------------~----~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      |+||||||.. .                   .    ..++.+++.+.+.+ .++||++||..++...     .....|..
T Consensus        74 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----~~~~~Y~~  147 (254)
T 1zmt_A           74 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFGPW-----KELSTYTS  147 (254)
T ss_dssp             CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTSCC-----TTCHHHHH
T ss_pred             CEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCcccccCC-----CCchHHHH
Confidence            9999999976 2                   1    12444555556666 6899999998776532     23568999


Q ss_pred             hHhhhhHHH
Q 040431          134 TELIDQKIF  142 (157)
Q Consensus       134 ~~~~~~~~~  142 (157)
                      +|.+.+.+.
T Consensus       148 sK~a~~~~~  156 (254)
T 1zmt_A          148 ARAGACTLA  156 (254)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998776663

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.66  E-value=1.9e-15  Score=112.95  Aligned_cols=129  Identities=11%  Similarity=0.075  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEe-cCCCCCCCchhhHh-hhh---cCCCeEEEEccCCChH----------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV-RESTISGPSKSQLL-DHF---KNLGVNLVIGDVLNHE----------   68 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~-r~~~~~~~~~~~~~-~~~---~~~~v~~~~~D~~~~~----------   68 (157)
                      .++++||||+|+||++++++|++.|++|++++ |+     .++.+.+ ++.   ...++.++.+|++|++          
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS-----AAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGS   83 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-----HHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----C
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCC-----HHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccc
Confidence            47899999999999999999999999999999 87     4443322 222   2457899999999998          


Q ss_pred             -------HHHHHhc-------CcCEEEEcCCCcc---------------------------------hHH----HHHHHH
Q 040431           69 -------SLVKAIK-------QVDVVISTVGHTL---------------------------------LAD----QVKIIA   97 (157)
Q Consensus        69 -------~~~~~~~-------~~d~vv~~a~~~~---------------------------------~~~----~~~l~~   97 (157)
                             ++.++++       ++|++|||||...                                 ..+    ++.+++
T Consensus        84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  163 (291)
T 1e7w_A           84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH  163 (291)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                   8887775       6899999999742                                 111    233344


Q ss_pred             HHHHhcC-----CccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           98 AIKEAEG-----ASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        98 ~~~~~~~-----~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      .+.+.+.     .++||++||..++...     .....|..+|.+.+.+.
T Consensus       164 ~m~~~~~~~~~~~g~Iv~isS~~~~~~~-----~~~~~Y~asKaa~~~l~  208 (291)
T 1e7w_A          164 RVAGTPAKHRGTNYSIINMVDAMTNQPL-----LGYTIYTMAKGALEGLT  208 (291)
T ss_dssp             HHHTSCGGGSCSCEEEEEECCTTTTSCC-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCCCcEEEEEechhhcCCC-----CCCchhHHHHHHHHHHH
Confidence            4444320     3689999998776532     23568889988776663

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.66  E-value=2.6e-15  Score=111.83  Aligned_cols=129  Identities=10%  Similarity=0.055  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-h---hcCCCeEEEEccCCC----hHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-H---FKNLGVNLVIGDVLN----HESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~---~~~~~v~~~~~D~~~----~~~~~~~~~   75 (157)
                      .++++||||+|+||++++++|++.|++|++++|+..    ++.+.+. +   ....++.++.+|++|    ++++.++++
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~----~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~   98 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSA----EAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN   98 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCH----HHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCch----HHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence            578999999999999999999999999999999830    3333221 1   224568899999999    888887775


Q ss_pred             -------CcCEEEEcCCCcc-----------------------------hHHHHHHHHHHH----HhcC-----CccEEE
Q 040431           76 -------QVDVVISTVGHTL-----------------------------LADQVKIIAAIK----EAEG-----ASRGTL  110 (157)
Q Consensus        76 -------~~d~vv~~a~~~~-----------------------------~~~~~~l~~~~~----~~~~-----~~~~v~  110 (157)
                             ++|+||||||...                             ..++..+++++.    +.+.     .++||+
T Consensus        99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~  178 (288)
T 2x9g_A           99 SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVN  178 (288)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEE
Confidence                   6899999999632                             111333334433    2210     358999


Q ss_pred             eccccccccCCCccCCccchhhHhHhhhhHH
Q 040431          111 RTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       111 ~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      +||..++...     .....|..+|.+.+.+
T Consensus       179 isS~~~~~~~-----~~~~~Y~asKaa~~~l  204 (288)
T 2x9g_A          179 LCDAMVDQPC-----MAFSLYNMGKHALVGL  204 (288)
T ss_dssp             ECCTTTTSCC-----TTCHHHHHHHHHHHHH
T ss_pred             EecccccCCC-----CCCchHHHHHHHHHHH
Confidence            9998776532     2356799999876655

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.65  E-value=2.1e-15  Score=120.14  Aligned_cols=131  Identities=14%  Similarity=0.155  Sum_probs=98.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhcC----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIKQ----   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~----   76 (157)
                      .++++||||+|+||.+++++|+++|++ |++++|+.... +...+..+++  ...++.++.+|++|++++.++++.    
T Consensus       226 ~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~-~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~  304 (486)
T 2fr1_A          226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA-DGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD  304 (486)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS-TTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCc-HHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence            578999999999999999999999996 88888875322 1111111222  235688999999999999999875    


Q ss_pred             --cCEEEEcCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           77 --VDVVISTVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        77 --~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                        +|+|||+||...                   +.++.++.+++.+.+ .++||++||..++...+     ....|..+|
T Consensus       305 g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~V~~SS~a~~~g~~-----g~~~Yaaak  378 (486)
T 2fr1_A          305 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFSSFASAFGAP-----GLGGYAPGN  378 (486)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEEEHHHHTCCT-----TCTTTHHHH
T ss_pred             CCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEcChHhcCCCC-----CCHHHHHHH
Confidence              499999999753                   455778888888776 78999999976653322     235677777


Q ss_pred             hhhhHH
Q 040431          136 LIDQKI  141 (157)
Q Consensus       136 ~~~~~~  141 (157)
                      .+.+.+
T Consensus       379 a~l~~l  384 (486)
T 2fr1_A          379 AYLDGL  384 (486)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.65  E-value=2.7e-15  Score=113.94  Aligned_cols=129  Identities=11%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEe-cCCCCCCCchhhHhh-hh---cCCCeEEEEccCCChH----------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV-RESTISGPSKSQLLD-HF---KNLGVNLVIGDVLNHE----------   68 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~-~~---~~~~v~~~~~D~~~~~----------   68 (157)
                      .++++||||+|+||+++++.|++.|++|++++ |+     .++.+.+. ++   ...++.++.+|++|++          
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  120 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS-----AAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGS  120 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-----HHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCC-----HHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccc
Confidence            46899999999999999999999999999999 87     44443222 21   2457899999999998          


Q ss_pred             -------HHHHHhc-------CcCEEEEcCCCcc---------------------------------hHH----HHHHHH
Q 040431           69 -------SLVKAIK-------QVDVVISTVGHTL---------------------------------LAD----QVKIIA   97 (157)
Q Consensus        69 -------~~~~~~~-------~~d~vv~~a~~~~---------------------------------~~~----~~~l~~   97 (157)
                             ++.++++       ++|+||||||...                                 +.+    ++.+++
T Consensus       121 ~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  200 (328)
T 2qhx_A          121 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH  200 (328)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   8887775       6899999999742                                 111    233444


Q ss_pred             HHHHhcC-----CccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           98 AIKEAEG-----ASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        98 ~~~~~~~-----~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      .+.+.+.     .++||++||..++...     .....|..+|.+.+.+.
T Consensus       201 ~m~~~~~~~~~~~g~IV~isS~~~~~~~-----~~~~~Y~asKaal~~l~  245 (328)
T 2qhx_A          201 RVAGTPAKHRGTNYSIINMVDAMTNQPL-----LGYTIYTMAKGALEGLT  245 (328)
T ss_dssp             HHHHSCGGGSCSCEEEEEECCTTTTSCC-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcCCCCCcEEEEECchhhccCC-----CCcHHHHHHHHHHHHHH
Confidence            4444320     3689999998776532     23568999998776663

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.65  E-value=3.3e-15  Score=110.29  Aligned_cols=128  Identities=13%  Similarity=0.055  Sum_probs=93.1

Q ss_pred             CCeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecCCCCCCCch-hhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRESTISGPSK-SQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||  +|+||++++++|++.|++|++++|+     .++ .+.+.+....++.++.+|++|++++.++++     
T Consensus         7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            7 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD-----RLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA   81 (269)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECS-----CHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecC-----hHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            468999999  9999999999999999999999988     433 233332224468899999999999988876     


Q ss_pred             -----CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccC
Q 040431           76 -----QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        76 -----~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                           ++|++|||||...                        ..++..+++++...- ..++||++||...++      .
T Consensus        82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~------~  155 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA------M  155 (269)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC------C
T ss_pred             hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc------c
Confidence                 7899999999642                        222444555554431 025899999876532      1


Q ss_pred             CccchhhHhHhhhhHHH
Q 040431          126 TTLDMLEMTELIDQKIF  142 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~  142 (157)
                      .....|..+|.+.+.+.
T Consensus       156 ~~~~~Y~asKaa~~~l~  172 (269)
T 2h7i_A          156 PAYNWMTVAKSALESVN  172 (269)
T ss_dssp             TTTHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHH
Confidence            34567888888776663

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.64  E-value=2.6e-15  Score=110.45  Aligned_cols=131  Identities=9%  Similarity=0.012  Sum_probs=95.6

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+  |+||++++++|++.|++|++++|+...  .+.++.+... ...+.++.+|++|++++.++++      
T Consensus        14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRF--KDRITEFAAE-FGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG--HHHHHHHHHH-TTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhh--HHHHHHHHHH-cCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5799999999  999999999999999999999988321  2223222222 2358899999999999998876      


Q ss_pred             -CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccc
Q 040431           76 -QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 -~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                       ++|++|||||...                        ..++..+++++...- ..++||++||..++...     ....
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----~~~~  165 (271)
T 3ek2_A           91 DSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAI-----PNYN  165 (271)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-----TTTT
T ss_pred             CCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCC-----CCcc
Confidence             5799999999742                        222445555554431 13589999998776543     2356


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+.+.+.
T Consensus       166 ~Y~asKaa~~~~~  178 (271)
T 3ek2_A          166 TMGLAKAALEASV  178 (271)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHH
Confidence            8999998776663

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.64  E-value=9.5e-16  Score=111.65  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHH---HHh---cCc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLV---KAI---KQV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~---~~~---~~~   77 (157)
                      .++++||||+|+||++++++|++ |+.|++++|+     +++.+.+.+  ..++.++.+|+++.++..   +.+   .++
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~-----~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRN-----PEHLAALAE--IEGVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESC-----HHHHHHHHT--STTEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCC-----HHHHHHHHh--hcCCcceecccchHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999987 9999999988     555554443  346889999998875422   122   268


Q ss_pred             CEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           78 DVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        78 d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      |++|||||...                   +.+    ++.+++.+.+.+  ++||++||..++...     .....|..+
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~-----~~~~~Y~as  149 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNGPH-----PGNTIYAAS  149 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC---------------CHHHHHH
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcccccCC-----CCchHHHHH
Confidence            99999999864                   112    444555555544  689999998877643     235689999


Q ss_pred             HhhhhHHHH
Q 040431          135 ELIDQKIFI  143 (157)
Q Consensus       135 ~~~~~~~~~  143 (157)
                      |.+.+.+..
T Consensus       150 K~a~~~~~~  158 (245)
T 3e9n_A          150 KHALRGLAD  158 (245)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998777643

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.62  E-value=4.4e-15  Score=112.42  Aligned_cols=132  Identities=16%  Similarity=0.134  Sum_probs=90.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC----CCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI----SGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~----~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||++++++|++.|++|++.++....    .+.++.+.. ++...... ...+|+.|.+++.++++   
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999998764211    113333322 22221111 23579999887766643   


Q ss_pred             ----CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|+||||||...                   ..+    ++.+++.+.+.+ .++||++||.......     ...
T Consensus        88 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vsS~~~~~~~-----~~~  161 (319)
T 1gz6_A           88 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGIYGN-----FGQ  161 (319)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCC-----TTC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhccCC-----CCC
Confidence                6899999999643                   112    445555566666 6899999997654322     235


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+.+.+.
T Consensus       162 ~~Y~aSK~a~~~~~  175 (319)
T 1gz6_A          162 ANYSAAKLGLLGLA  175 (319)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            68999999877663

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.61  E-value=8.8e-15  Score=115.62  Aligned_cols=127  Identities=13%  Similarity=0.129  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+|+||.+++++|++.|++|++++|+..   .+..+.+.  ...++.++.+|++|++++.++++       +
T Consensus       213 gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~---~~~l~~~~--~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~  287 (454)
T 3u0b_A          213 GKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA---AEDLKRVA--DKVGGTALTLDVTADDAVDKITAHVTEHHGG  287 (454)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG---HHHHHHHH--HHHTCEEEECCTTSTTHHHHHHHHHHHHSTT
T ss_pred             CCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc---HHHHHHHH--HHcCCeEEEEecCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999988631   12222111  12256789999999999888875       3


Q ss_pred             -cCEEEEcCCCcc-------------------hHHHHHHHHHHHHh----cCCccEEEeccccccccCCCccCCccchhh
Q 040431           77 -VDVVISTVGHTL-------------------LADQVKIIAAIKEA----EGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        77 -~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~----~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                       +|+||||||...                   +.++.++.+++...    + ..+||++||..++...+     ....|.
T Consensus       288 ~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~-~g~iV~iSS~a~~~g~~-----g~~~Ya  361 (454)
T 3u0b_A          288 KVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGE-GGRVIGLSSMAGIAGNR-----GQTNYA  361 (454)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCT-TCEEEEECCHHHHHCCT-----TCHHHH
T ss_pred             CceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEEeChHhCCCCC-----CCHHHH
Confidence             999999999864                   44466777776654    4 57999999987764332     346788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+.+.+
T Consensus       362 asKaal~~l  370 (454)
T 3u0b_A          362 TTKAGMIGL  370 (454)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888866555

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.60  E-value=5.5e-15  Score=106.23  Aligned_cols=111  Identities=15%  Similarity=0.069  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .++++||||+|+||++++++|++.|++|++++|+.     +                 +|++|++++.++++   ++|++
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-----~-----------------~D~~~~~~v~~~~~~~g~id~l   63 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQT-----G-----------------LDISDEKSVYHYFETIGAFDHL   63 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGG-----T-----------------CCTTCHHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCc-----c-----------------cCCCCHHHHHHHHHHhCCCCEE
Confidence            46899999999999999999999999999998872     1                 79999999998886   68999


Q ss_pred             EEcCCCcc--------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhHhhhh
Q 040431           81 ISTVGHTL--------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQ  139 (157)
Q Consensus        81 v~~a~~~~--------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (157)
                      |||||...                    ..++..+++++...- ..++||++||..++...     .....|..+|.+.+
T Consensus        64 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-----~~~~~Y~asK~a~~  138 (223)
T 3uce_A           64 IVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVV-----ANTYVKAAINAAIE  138 (223)
T ss_dssp             EECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCC-----TTCHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCC-----CCchHHHHHHHHHH
Confidence            99999762                    333555666655442 02589999998776543     23568899998776


Q ss_pred             HH
Q 040431          140 KI  141 (157)
Q Consensus       140 ~~  141 (157)
                      .+
T Consensus       139 ~~  140 (223)
T 3uce_A          139 AT  140 (223)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.60  E-value=2e-14  Score=114.63  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=99.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.+++++|+++|+ .|++++|+.... +...+..+++  ...++.++.+|++|++++.++++     
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~-~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~  317 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADA-PGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED  317 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGS-TTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCCh-HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            37899999999999999999999998 677777764332 1111222222  24578999999999999999986     


Q ss_pred             -CcCEEEEcCCCc-c-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 -QVDVVISTVGHT-L-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 -~~d~vv~~a~~~-~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                       .+|+||||||.. .                   +.++.++.+++.... .++||++||..+....     .....|..+
T Consensus       318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~-~~~iV~~SS~a~~~g~-----~g~~~YaAa  391 (496)
T 3mje_A          318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD-LDAFVLFSSGAAVWGS-----GGQPGYAAA  391 (496)
T ss_dssp             SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC-CSEEEEEEEHHHHTTC-----TTCHHHHHH
T ss_pred             CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeChHhcCCC-----CCcHHHHHH
Confidence             489999999986 2                   556788888888876 7899999997765432     234578888


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+.+.+.
T Consensus       392 Ka~ldala  399 (496)
T 3mje_A          392 NAYLDALA  399 (496)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776663

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.59  E-value=2.3e-15  Score=114.32  Aligned_cols=137  Identities=11%  Similarity=0.038  Sum_probs=93.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCCCCCchhhH-hhhhcCCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTISGPSKSQL-LDHFKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      |.++|||+||||+||||++++..|++.|+       +|+++++.+.   ..+.+. ..++.+..+.++ .|+.+.+++.+
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~---~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~   76 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA---MKALEGVVMELEDCAFPLL-AGLEATDDPKV   76 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG---HHHHHHHHHHHHTTTCTTE-EEEEEESCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc---hhhccchhhhhhccccccc-CCeEeccChHH
Confidence            76678999999999999999999999886       7988887621   011111 112222222333 57777677788


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc-CCccEEEeccccc---cccC-CCccCCccchhhHh
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAE-GASRGTLRTQKGK---MSSL-SSEMTTTLDMLEMT  134 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~---~~~~-~~~~~~~~~~~~~~  134 (157)
                      +++++|+|||+||...             ..+++++++++.+.+ ...+++++|+...   +... ......+..+|+.+
T Consensus        77 a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~t  156 (327)
T 1y7t_A           77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMT  156 (327)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECC
T ss_pred             HhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccc
Confidence            8999999999999764             566899999999874 2347777776431   1100 11013456679999


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      +...+.+
T Consensus       157 kl~~er~  163 (327)
T 1y7t_A          157 RLDHNRA  163 (327)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            9977766

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.57  E-value=2.3e-14  Score=92.67  Aligned_cols=95  Identities=24%  Similarity=0.220  Sum_probs=79.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +++|+|+|+ |++|+++++.|.+.| ++|++++|+     +++.+.+.   ..++.++.+|+.+++++.++++++|+||+
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~-----~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHD-----LAALAVLN---RMGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESC-----HHHHHHHH---TTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCC-----HHHHHHHH---hCCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            579999999 999999999999999 899999998     65554443   45678899999999999999999999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +++..   ....+++++.+.+ ..++...
T Consensus        76 ~~~~~---~~~~~~~~~~~~g-~~~~~~~  100 (118)
T 3ic5_A           76 AAPFF---LTPIIAKAAKAAG-AHYFDLT  100 (118)
T ss_dssp             CSCGG---GHHHHHHHHHHTT-CEEECCC
T ss_pred             CCCch---hhHHHHHHHHHhC-CCEEEec
Confidence            99765   3678899999988 6555443

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.56  E-value=5.9e-14  Score=102.17  Aligned_cols=125  Identities=15%  Similarity=0.096  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEE-e--cCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh----cC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVL-V--RESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI----KQ   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~-~--r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~----~~   76 (157)
                      +++++||||+|+||++++++|++.|++|+++ +  |+     +++.+.+.+.. .+.++.  |..+.+.+.+.+    .+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~-----~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFAD-----AAERQRFESEN-PGTIAL--AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGS-----HHHHHHHHHHS-TTEEEC--CCCCGGGHHHHHGGGSSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCC-----HHHHHHHHHHh-CCCccc--CHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999999999999998 5  87     44444332221 223322  444444433322    26


Q ss_pred             cCEEEEcCCCcch--------------------------HHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           77 VDVVISTVGHTLL--------------------------ADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        77 ~d~vv~~a~~~~~--------------------------~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                      +|++|||||....                          ..++.+++.+.+.+ .++||++||..++...     .....
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----~~~~~  146 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG-GASVIFITSSVGKKPL-----AYNPL  146 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSCC-----TTCTT
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhCCCC-----CCchH
Confidence            8999999986421                          12344555555665 6899999998776543     23457


Q ss_pred             hhHhHhhhhHHH
Q 040431          131 LEMTELIDQKIF  142 (157)
Q Consensus       131 ~~~~~~~~~~~~  142 (157)
                      |..+|.+.+.+.
T Consensus       147 Y~asK~a~~~~~  158 (244)
T 1zmo_A          147 YGPARAATVALV  158 (244)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            889988776663

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.52  E-value=2.1e-13  Score=109.51  Aligned_cols=132  Identities=8%  Similarity=0.066  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEE-ecCCCC----------CCCchhhHhhhh--cCCCeEEEEccCCChHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVL-VRESTI----------SGPSKSQLLDHF--KNLGVNLVIGDVLNHES   69 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~-~r~~~~----------~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~   69 (157)
                      .++++||||+|+||.+++++|+++|++ |+++ +|+...          . +...+..+++  ...++.++.+|++|+++
T Consensus       251 ~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~  329 (525)
T 3qp9_A          251 DGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAED-SGLAGLVAELADLGATATVVTCDLTDAEA  329 (525)
T ss_dssp             TSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC----------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccC-HHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence            578999999999999999999999998 4455 676422          1 1111122222  24568999999999999


Q ss_pred             HHHHhcC------cCEEEEcCCCcc-------------------hHHHHHHHHHHHHhcC----CccEEEeccccccccC
Q 040431           70 LVKAIKQ------VDVVISTVGHTL-------------------LADQVKIIAAIKEAEG----ASRGTLRTQKGKMSSL  120 (157)
Q Consensus        70 ~~~~~~~------~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~~----~~~~v~~Ss~~~~~~~  120 (157)
                      +.+++..      +|+|||+||...                   +.++.++.+++.....    .++||++||..+....
T Consensus       330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~  409 (525)
T 3qp9_A          330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGG  409 (525)
T ss_dssp             HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCC
T ss_pred             HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCC
Confidence            9999863      799999999864                   4456667777665431    4689999998776432


Q ss_pred             CCccCCccchhhHhHhhhhHH
Q 040431          121 SSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      +     ....|..+|.+.+.+
T Consensus       410 ~-----g~~~YaaaKa~l~~l  425 (525)
T 3qp9_A          410 A-----GQGAYAAGTAFLDAL  425 (525)
T ss_dssp             T-----TCHHHHHHHHHHHHH
T ss_pred             C-----CCHHHHHHHHHHHHH
Confidence            2     245788888766555

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.52  E-value=3.9e-14  Score=115.63  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC----CCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI----SGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~----~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+||+++++.|++.|++|++++|....    .+.+.++.+ ++....... ..+|+.|.+++.++++   
T Consensus        19 gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           19 GRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHHHC---
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHH
Confidence            5789999999999999999999999999999873211    012222222 222222222 3479999988887775   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|++|||||...                       ...++.+++.+++.+ .++||++||..+....+     ..
T Consensus        98 ~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~-~g~IV~isS~a~~~~~~-----~~  171 (613)
T 3oml_A           98 KAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN-YGRIIMTSSNSGIYGNF-----GQ  171 (613)
T ss_dssp             -------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEECCHHHHHCCT-----TC
T ss_pred             HHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCHHHcCCCC-----CC
Confidence                5899999999864                       222445555567766 68999999987654322     35


Q ss_pred             chhhHhHhhhhHHH
Q 040431          129 DMLEMTELIDQKIF  142 (157)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (157)
                      ..|..+|.+...+.
T Consensus       172 ~~Y~asKaal~~lt  185 (613)
T 3oml_A          172 VNYTAAKMGLIGLA  185 (613)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            67899998776663

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.40  E-value=2.1e-12  Score=105.21  Aligned_cols=131  Identities=14%  Similarity=0.084  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC----CCCchhhH-hhhhcCCCeEEEEccCCChHHHHHHh----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI----SGPSKSQL-LDHFKNLGVNLVIGDVLNHESLVKAI----   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~----~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~~~~~~----   74 (157)
                      .++++||||+++||+++++.|++.|++|++.+|+...    .+.++++. .++....+-.. .+|+.|.+++++++    
T Consensus         8 gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~-~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            8 DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA-VADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEE-EEECCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeE-EEEcCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999998876411    01133332 22222112122 24666654443333    


Q ss_pred             ---cCcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           75 ---KQVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        75 ---~~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                         .++|++|||||...                       +..++.+++.+++.+ .++||++||..+....+     ..
T Consensus        87 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~-~G~IVnisS~ag~~~~~-----~~  160 (604)
T 2et6_A           87 KNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK-YGRIVNTSSPAGLYGNF-----GQ  160 (604)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCCT-----TB
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCHHHcCCCC-----Cc
Confidence               36999999999753                       333677788888776 68999999977654322     24


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+...+
T Consensus       161 ~~Y~asKaal~~l  173 (604)
T 2et6_A          161 ANYASAKSALLGF  173 (604)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            5788888876555

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.40  E-value=3.6e-12  Score=103.92  Aligned_cols=128  Identities=13%  Similarity=0.011  Sum_probs=89.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccC-CChHHHHH-H---hcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV-LNHESLVK-A---IKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~-~~~~~~~~-~---~~~~d   78 (157)
                      .++++||||+++||.++++.|++.|++|++.+|..  . .+..+.+... ...+..+.+|+ .+.+.+.+ +   +.++|
T Consensus       322 gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~-~~~~~~i~~~-g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iD  397 (604)
T 2et6_A          322 DKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--A-TKTVDEIKAA-GGEAWPDQHDVAKDSEAIIKNVIDKYGTID  397 (604)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--C-HHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--H-HHHHHHHHhc-CCeEEEEEcChHHHHHHHHHHHHHhcCCCC
Confidence            46899999999999999999999999999887631  1 1112222222 23466677888 65544332 2   23699


Q ss_pred             EEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           79 VVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        79 ~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      ++|||||...                       ...++.+++.+++.+ .++||++||..+....+     ....|..+|
T Consensus       398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~ag~~~~~-----~~~~Y~asK  471 (604)
T 2et6_A          398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ-FGRIINITSTSGIYGNF-----GQANYSSSK  471 (604)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCHHHHSCCT-----TBHHHHHHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhccCCC-----CChhHHHHH
Confidence            9999999754                       333677777787766 68999999977654322     345788888


Q ss_pred             hhhhHH
Q 040431          136 LIDQKI  141 (157)
Q Consensus       136 ~~~~~~  141 (157)
                      .+...+
T Consensus       472 aal~~l  477 (604)
T 2et6_A          472 AGILGL  477 (604)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876555

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.39  E-value=1.5e-12  Score=98.67  Aligned_cols=133  Identities=5%  Similarity=-0.067  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCC---------CCCCCchhhHhh--hhcCCCeEEEEccCCCh--H
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRES---------TISGPSKSQLLD--HFKNLGVNLVIGDVLNH--E   68 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~---------~~~~~~~~~~~~--~~~~~~v~~~~~D~~~~--~   68 (157)
                      .++++||||++  +||.+++++|++.|++|++.+|++         ...... .....  ......+.++.+|+++.  +
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFD-NDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTT-GGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHH-HHHHHhhcccccccccccccccccchh
Confidence            57899999875  999999999999999999777653         111000 00000  11123467888999876  6


Q ss_pred             ------------------HHHHHhc-------CcCEEEEcCCCcc---------------------hHHHHHHHHHHHHh
Q 040431           69 ------------------SLVKAIK-------QVDVVISTVGHTL---------------------LADQVKIIAAIKEA  102 (157)
Q Consensus        69 ------------------~~~~~~~-------~~d~vv~~a~~~~---------------------~~~~~~l~~~~~~~  102 (157)
                                        ++.++++       ++|++|||||...                     +.++..+.+++...
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              6666654       5899999999631                     22344444444333


Q ss_pred             c-CCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431          103 E-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       103 ~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      - ..++||++||..+....+..    ...|..+|.+...+
T Consensus       161 m~~~g~Iv~isS~~~~~~~~~~----~~~Y~asKaal~~~  196 (329)
T 3lt0_A          161 MKPQSSIISLTYHASQKVVPGY----GGGMSSAKAALESD  196 (329)
T ss_dssp             EEEEEEEEEEECGGGTSCCTTC----TTTHHHHHHHHHHH
T ss_pred             HhhCCeEEEEeCccccCCCCcc----hHHHHHHHHHHHHH
Confidence            1 01589999998766433221    13788888876655

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.36  E-value=1.3e-11  Score=92.15  Aligned_cols=134  Identities=9%  Similarity=-0.005  Sum_probs=80.8

Q ss_pred             CCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCC------CCCchhhHhhhhcCCC----eEEEEcc--------
Q 040431            4 KSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTI------SGPSKSQLLDHFKNLG----VNLVIGD--------   63 (157)
Q Consensus         4 ~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~------~~~~~~~~~~~~~~~~----v~~~~~D--------   63 (157)
                      .++++||||+  |+||++++++|++.|++|++++|++..      .+.++++.+++.....    ...+.+|        
T Consensus         8 ~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   87 (297)
T 1d7o_A            8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPED   87 (297)
T ss_dssp             TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSGGG
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccchhh
Confidence            4789999999  999999999999999999998864100      0011111111111111    2333333        


Q ss_pred             CC----C--------hHHHHHHhc-------CcCEEEEcCCCcc---------------------hHHHHHHHHHHHHhc
Q 040431           64 VL----N--------HESLVKAIK-------QVDVVISTVGHTL---------------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        64 ~~----~--------~~~~~~~~~-------~~d~vv~~a~~~~---------------------~~~~~~l~~~~~~~~  103 (157)
                      +.    |        ++++.++++       ++|++|||||...                     ..++..+++++...-
T Consensus        88 v~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m  167 (297)
T 1d7o_A           88 VPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIM  167 (297)
T ss_dssp             SCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             hhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            22    2        344554443       6899999998521                     333555666665431


Q ss_pred             -CCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431          104 -GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       104 -~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                       ..++||++||..++...+..    ...|..+|.+.+.+
T Consensus       168 ~~~g~iv~isS~~~~~~~~~~----~~~Y~asKaa~~~~  202 (297)
T 1d7o_A          168 NPGGASISLTYIASERIIPGY----GGGMSSAKAALESD  202 (297)
T ss_dssp             EEEEEEEEEECGGGTSCCTTC----TTTHHHHHHHHHHH
T ss_pred             ccCceEEEEeccccccCCCCc----chHHHHHHHHHHHH
Confidence             02689999998766432211    14789999877666

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.36  E-value=6.5e-12  Score=94.61  Aligned_cols=135  Identities=5%  Similarity=-0.064  Sum_probs=80.9

Q ss_pred             CCeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecCCC------CCCCchhhHhhhhcCC----CeEEEEccC-------
Q 040431            4 KSKILFIGG--TGYIGKFTVEASVKAGHPTFVLVREST------ISGPSKSQLLDHFKNL----GVNLVIGDV-------   64 (157)
Q Consensus         4 ~~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~~~------~~~~~~~~~~~~~~~~----~v~~~~~D~-------   64 (157)
                      .++++||||  +|+||.+++++|++.|++|++++|++.      ..+.++.+.+.+....    .+.++.+|+       
T Consensus         9 gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (315)
T 2o2s_A            9 GQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKPED   88 (315)
T ss_dssp             TCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSSTTS
T ss_pred             CCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccccch
Confidence            368999999  899999999999999999999987520      0000111111111111    124444443       


Q ss_pred             -----CC--------hHHHHHHhc-------CcCEEEEcCCCcc---------------------hHHHHHHHHHHHHhc
Q 040431           65 -----LN--------HESLVKAIK-------QVDVVISTVGHTL---------------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        65 -----~~--------~~~~~~~~~-------~~d~vv~~a~~~~---------------------~~~~~~l~~~~~~~~  103 (157)
                           +|        ++++.++++       ++|++|||||...                     +.++..+++++...-
T Consensus        89 ~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m  168 (315)
T 2o2s_A           89 VPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIM  168 (315)
T ss_dssp             SCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHSTTE
T ss_pred             hhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 22        345555543       6899999998541                     223444555544321


Q ss_pred             -CCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431          104 -GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       104 -~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                       ..++||++||..++...+..    ...|..+|.+.+.+.
T Consensus       169 ~~~g~Iv~isS~~~~~~~~~~----~~~Y~asKaal~~l~  204 (315)
T 2o2s_A          169 NEGGSAVTLSYLAAERVVPGY----GGGMSSAKAALESDT  204 (315)
T ss_dssp             EEEEEEEEEEEGGGTSCCTTC----CTTHHHHHHHHHHHH
T ss_pred             hcCCEEEEEecccccccCCCc----cHHHHHHHHHHHHHH
Confidence             02589999998766432211    146889988776663

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.36  E-value=9.1e-12  Score=104.35  Aligned_cols=129  Identities=16%  Similarity=0.230  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHH-hCCCc-EEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASV-KAGHP-TFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~-~~g~~-v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+|++|.+++++|. ++|++ |++++|+.... +...+..+++  ...++.++.+|++|++++.++++    
T Consensus       530 ~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~-~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~  608 (795)
T 3slk_A          530 AGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAA-SGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD  608 (795)
T ss_dssp             TSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGS-TTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             ccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccch-HHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            5789999999999999999999 78985 88888874332 2222223332  24568899999999999999886    


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                        .+|+||||||...                   +.++.++.+++.. . . +||++||..+....+     ....|..+
T Consensus       609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~-l-~iV~~SS~ag~~g~~-----g~~~YaAa  680 (795)
T 3slk_A          609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-D-V-ALVLFSSVSGVLGSG-----GQGNYAAA  680 (795)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-T-S-EEEEEEETHHHHTCS-----SCHHHHHH
T ss_pred             hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-C-C-EEEEEccHHhcCCCC-----CCHHHHHH
Confidence              4799999999865                   3446666666522 2 3 899999987764332     24567877


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      |.+...+
T Consensus       681 ka~~~al  687 (795)
T 3slk_A          681 NSFLDAL  687 (795)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665554

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.32  E-value=4.4e-11  Score=106.30  Aligned_cols=130  Identities=13%  Similarity=0.104  Sum_probs=90.9

Q ss_pred             CCeEEEEcCCCc-chHHHHHHHHhCCCcEEEEe-cCCCCCCCchhh----Hh-hhhc--CCCeEEEEccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGY-IGKFTVEASVKAGHPTFVLV-RESTISGPSKSQ----LL-DHFK--NLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~-iG~~l~~~l~~~g~~v~~~~-r~~~~~~~~~~~----~~-~~~~--~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      .++++||||+++ ||.++++.|++.|++|++++ |+     .++.+    .+ .+..  ..++.++.+|++|.+++.+++
T Consensus       675 gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~-----~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv  749 (1887)
T 2uv8_A          675 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRF-----SKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI  749 (1887)
T ss_dssp             TCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSC-----CHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCC-----HHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence            478999999998 99999999999999999885 44     33332    12 1221  346888999999999988876


Q ss_pred             c-------------CcCEEEEcCCCcc----------------------hHHHHHHHHHHHHhc-----CCccEEEeccc
Q 040431           75 K-------------QVDVVISTVGHTL----------------------LADQVKIIAAIKEAE-----GASRGTLRTQK  114 (157)
Q Consensus        75 ~-------------~~d~vv~~a~~~~----------------------~~~~~~l~~~~~~~~-----~~~~~v~~Ss~  114 (157)
                      .             .+|+||||||...                      +.+...++.++....     +.++||++||.
T Consensus       750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~  829 (1887)
T 2uv8_A          750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN  829 (1887)
T ss_dssp             HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSC
T ss_pred             HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcCh
Confidence            3             4899999999742                      111233444442221     02689999997


Q ss_pred             cccccCCCccCCccchhhHhHhhhhHHHHHH
Q 040431          115 GKMSSLSSEMTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                      .+...       ....|..+|.+...++...
T Consensus       830 ag~~g-------g~~aYaASKAAL~~Lttr~  853 (1887)
T 2uv8_A          830 HGTFG-------GDGMYSESKLSLETLFNRW  853 (1887)
T ss_dssp             TTCSS-------CBTTHHHHHHHGGGHHHHH
T ss_pred             HhccC-------CCchHHHHHHHHHHHHHHH
Confidence            66543       3457999999887763333

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.32  E-value=4.3e-11  Score=92.64  Aligned_cols=84  Identities=21%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh-CCCcEEEEecCCCCCCCc----------hhhHhhhhcCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPS----------KSQLLDHFKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~----------~~~~~~~~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      .++++||||+++||.++++.|++ .|++|++++|+.......          ..+.........+..+.+|++|++++.+
T Consensus        47 gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v~~  126 (405)
T 3zu3_A           47 PKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQL  126 (405)
T ss_dssp             CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHH
T ss_pred             CCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            57899999999999999999999 999999998875543111          0111111224567889999999999888


Q ss_pred             Hhc-------CcCEEEEcCCCc
Q 040431           73 AIK-------QVDVVISTVGHT   87 (157)
Q Consensus        73 ~~~-------~~d~vv~~a~~~   87 (157)
                      +++       ++|++|||||..
T Consensus       127 ~v~~i~~~~G~IDiLVNNAG~~  148 (405)
T 3zu3_A          127 TIDAIKQDLGQVDQVIYSLASP  148 (405)
T ss_dssp             HHHHHHHHTSCEEEEEECCCCS
T ss_pred             HHHHHHHHcCCCCEEEEcCccc
Confidence            775       589999999873

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.32  E-value=2.2e-11  Score=105.97  Aligned_cols=132  Identities=14%  Similarity=0.092  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCc-chHHHHHHHHhCCCcEEEEe-cCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGY-IGKFTVEASVKAGHPTFVLV-RESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~-iG~~l~~~l~~~g~~v~~~~-r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+|+ ||.++++.|++.|++|++++ |+.... .+..+.+ .+..  ..++.++.+|++|++++.++++   
T Consensus       476 GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~l-ee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I~  554 (1688)
T 2pff_A          476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV-TDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIY  554 (1688)
T ss_dssp             SCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTT-TTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHH-HHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            468999999998 99999999999999999884 543322 2222222 1211  3457889999999999888763   


Q ss_pred             ----------CcCEEEEcCCCcc----------------------hHHHHHHHHHHHHhc-----CCccEEEeccccccc
Q 040431           76 ----------QVDVVISTVGHTL----------------------LADQVKIIAAIKEAE-----GASRGTLRTQKGKMS  118 (157)
Q Consensus        76 ----------~~d~vv~~a~~~~----------------------~~~~~~l~~~~~~~~-----~~~~~v~~Ss~~~~~  118 (157)
                                .+|+||||||...                      +.+...+++++....     +.++||++||..+..
T Consensus       555 e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~~  634 (1688)
T 2pff_A          555 DTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTF  634 (1688)
T ss_dssp             SCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTTS
T ss_pred             HhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhcc
Confidence                      4899999999642                      112333444442211     025899999976654


Q ss_pred             cCCCccCCccchhhHhHhhhhHHHH
Q 040431          119 SLSSEMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      .       ....|..+|.+...+..
T Consensus       635 G-------g~saYaASKAAL~aLtt  652 (1688)
T 2pff_A          635 G-------GDGMYSESKLSLETLFN  652 (1688)
T ss_dssp             S-------CBTTHHHHHHHHTHHHH
T ss_pred             C-------CchHHHHHHHHHHHHHH
Confidence            2       34579999998777633

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.29  E-value=3e-11  Score=94.38  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCcchHH--HHHHHHhCCCcEEEEecCCCCCCC----------chhhHhhhhcCCCeEEEEccCCChHHHH
Q 040431            4 KSKILFIGGTGYIGKF--TVEASVKAGHPTFVLVRESTISGP----------SKSQLLDHFKNLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~--l~~~l~~~g~~v~~~~r~~~~~~~----------~~~~~~~~~~~~~v~~~~~D~~~~~~~~   71 (157)
                      .++++||||+++||.+  +++.|.+.|++|++++|+......          +..+.+.......+.++.+|++|++++.
T Consensus        60 gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~v~  139 (418)
T 4eue_A           60 PKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETKD  139 (418)
T ss_dssp             CSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHHHH
Confidence            5789999999999999  999999999999999997654311          1122122223456889999999999988


Q ss_pred             HHhc-------CcCEEEEcCCCc
Q 040431           72 KAIK-------QVDVVISTVGHT   87 (157)
Q Consensus        72 ~~~~-------~~d~vv~~a~~~   87 (157)
                      ++++       ++|++|||||..
T Consensus       140 ~~v~~i~~~~G~IDiLVnNAG~~  162 (418)
T 4eue_A          140 KVIKYIKDEFGKIDLFVYSLAAP  162 (418)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHcCCCCEEEECCccc
Confidence            8765       589999999973

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.27  E-value=1.8e-11  Score=92.25  Aligned_cols=33  Identities=15%  Similarity=0.034  Sum_probs=30.8

Q ss_pred             CeEEEEcC--CCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGG--TGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGa--tG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      ++++||||  +++||.++++.|++.|++|++++|+
T Consensus        10 k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~   44 (319)
T 2ptg_A           10 KTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWP   44 (319)
T ss_dssp             CEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECH
T ss_pred             CEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEecc
Confidence            68999999  8999999999999999999999864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.25  E-value=1.3e-11  Score=92.04  Aligned_cols=79  Identities=19%  Similarity=0.245  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcC-CCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKN-LGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~-~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++||||+|++|+++++.|++.|++|++++|+     .++.+.+. ++.. .++.++.+|++|++++.++++.+|+||
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~-----~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlV  193 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK-----LDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF  193 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEE
Confidence            5789999999999999999999999999999998     55544332 2211 246778899999999999999999999


Q ss_pred             EcCCCc
Q 040431           82 STVGHT   87 (157)
Q Consensus        82 ~~a~~~   87 (157)
                      |+++..
T Consensus       194 n~ag~g  199 (287)
T 1lu9_A          194 TAGAIG  199 (287)
T ss_dssp             ECCCTT
T ss_pred             ECCCcc
Confidence            999864

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.24  E-value=1.2e-10  Score=103.53  Aligned_cols=129  Identities=11%  Similarity=0.048  Sum_probs=88.7

Q ss_pred             CCeEEEEcCCCc-chHHHHHHHHhCCCcEEEEecCCCCCCCchhh----Hh-hhhc--CCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGY-IGKFTVEASVKAGHPTFVLVRESTISGPSKSQ----LL-DHFK--NLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~-iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~----~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .++++||||+|+ ||.+++++|++.|++|+++++..    .++.+    .+ .+..  ...+.++.+|++|.+++.+++.
T Consensus       652 gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~----~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~  727 (1878)
T 2uv9_A          652 GKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRF----SRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVN  727 (1878)
T ss_dssp             TCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSC----CHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCC----hHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHH
Confidence            478999999999 99999999999999999886442    22221    12 2222  3468889999999999988764


Q ss_pred             -----------CcCEEEEcCCCcch----------------------HHHHHHHHHHHHhc-----CCccEEEecccccc
Q 040431           76 -----------QVDVVISTVGHTLL----------------------ADQVKIIAAIKEAE-----GASRGTLRTQKGKM  117 (157)
Q Consensus        76 -----------~~d~vv~~a~~~~~----------------------~~~~~l~~~~~~~~-----~~~~~v~~Ss~~~~  117 (157)
                                 .+|+||||||....                      .++..++.++....     ..++||++||..+.
T Consensus       728 ~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~  807 (1878)
T 2uv9_A          728 YIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGT  807 (1878)
T ss_dssp             HHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSS
T ss_pred             HHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhc
Confidence                       48999999997521                      11223333321111     02689999997665


Q ss_pred             ccCCCccCCccchhhHhHhhhhHHHH
Q 040431          118 SSLSSEMTTTLDMLEMTELIDQKIFI  143 (157)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (157)
                      ..       ....|..+|.+...+..
T Consensus       808 ~g-------g~~aYaASKAAL~aLt~  826 (1878)
T 2uv9_A          808 FG-------NDGLYSESKLALETLFN  826 (1878)
T ss_dssp             SS-------CCSSHHHHHHHHTTHHH
T ss_pred             cC-------CchHHHHHHHHHHHHHH
Confidence            42       24579999988777643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=99.23  E-value=2.9e-10  Score=75.83  Aligned_cols=98  Identities=20%  Similarity=0.260  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      |++++|+|+ |.+|+++++.|.+.|++|++++++     +++.+.+.+   .++.++.+|.++++.+.++ +.++|+||.
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~-----~~~~~~~~~---~~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKS-----KEKIELLED---EGFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESC-----HHHHHHHHH---TTCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECC-----HHHHHHHHH---CCCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            568999997 999999999999999999999998     666654433   3578899999999998876 458999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +.+.  ......++..+++.+ ..+++-..+
T Consensus        77 ~~~~--~~~n~~~~~~a~~~~-~~~iia~~~  104 (141)
T 3llv_A           77 TGSD--DEFNLKILKALRSVS-DVYAIVRVS  104 (141)
T ss_dssp             CCSC--HHHHHHHHHHHHHHC-CCCEEEEES
T ss_pred             ecCC--HHHHHHHHHHHHHhC-CceEEEEEc
Confidence            8884  344556677777777 666655443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.23  E-value=1.7e-10  Score=105.95  Aligned_cols=134  Identities=10%  Similarity=0.023  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+|+||.++++.|+++|++ |++++|+.... ....+.+++.  ...++.++.+|++|.+++.++++     
T Consensus      1884 ~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~-~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A         1884 HKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRT-GYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCS-HHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcch-HHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence            568999999999999999999999997 77777874432 1111222222  23467888999999999888765     


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 -QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                       .+|+||||||...                   +.++.++.+++...- ..++||++||..+....+     ....|..+
T Consensus      1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~-----g~~~Y~aa 2037 (2512)
T 2vz8_A         1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNA-----GQANYGFA 2037 (2512)
T ss_dssp             SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCT-----TCHHHHHH
T ss_pred             CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCC-----CcHHHHHH
Confidence             5899999999753                   455666666665431 136899999987654322     24578899


Q ss_pred             HhhhhHHHH
Q 040431          135 ELIDQKIFI  143 (157)
Q Consensus       135 ~~~~~~~~~  143 (157)
                      |.+...+..
T Consensus      2038 Kaal~~l~~ 2046 (2512)
T 2vz8_A         2038 NSAMERICE 2046 (2512)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988877743

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=99.21  E-value=7.1e-11  Score=92.06  Aligned_cols=97  Identities=20%  Similarity=0.168  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---CcEEEEecCCCCCCCchhhHhhh-hc---CCCeEEEEccCCChHHHHHHhcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---HPTFVLVRESTISGPSKSQLLDH-FK---NLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~-~~---~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      |++|+|+|| |++|+++++.|++.|   .+|++.+|+     .++++.+.. +.   ..++..+.+|++|.+++.+++++
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~-----~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~   74 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRT-----LSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE   74 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESC-----HHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECC-----HHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence            458999998 999999999999998   389999998     666654432 22   13688999999999999999987


Q ss_pred             --cCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           77 --VDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        77 --~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                        +|+|||++++..   ...+++++.+.+ . +++-+
T Consensus        75 ~~~DvVin~ag~~~---~~~v~~a~l~~g-~-~vvD~  106 (405)
T 4ina_A           75 VKPQIVLNIALPYQ---DLTIMEACLRTG-V-PYLDT  106 (405)
T ss_dssp             HCCSEEEECSCGGG---HHHHHHHHHHHT-C-CEEES
T ss_pred             hCCCEEEECCCccc---ChHHHHHHHHhC-C-CEEEe
Confidence              999999999763   467888888887 3 44433

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=99.20  E-value=2.8e-10  Score=75.60  Aligned_cols=103  Identities=17%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      +++|+|+|+ |.+|+.+++.|.+.|++|++++++     +++.+.+.   .....++.+|..+++.+.++ +.++|+||+
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~-----~~~~~~~~---~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~   76 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDIN-----EEKVNAYA---SYATHAVIANATEENELLSLGIRNFEYVIV   76 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESC-----HHHHHTTT---TTCSEEEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHH---HhCCEEEEeCCCCHHHHHhcCCCCCCEEEE
Confidence            568999997 999999999999999999999987     54443332   22456788999998888776 778999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      +++.. ......++..+++.+ ..+++..++...+
T Consensus        77 ~~~~~-~~~~~~~~~~~~~~~-~~~ii~~~~~~~~  109 (144)
T 2hmt_A           77 AIGAN-IQASTLTTLLLKELD-IPNIWVKAQNYYH  109 (144)
T ss_dssp             CCCSC-HHHHHHHHHHHHHTT-CSEEEEECCSHHH
T ss_pred             CCCCc-hHHHHHHHHHHHHcC-CCeEEEEeCCHHH
Confidence            99874 123345667777777 6677766654443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=99.19  E-value=8.2e-10  Score=74.70  Aligned_cols=104  Identities=15%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDV   79 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~   79 (157)
                      |. .++++|+|+ |.+|+.+++.|.+.|++|+++++++    +++.+.+.+....++.++.+|.++++.+.++ +.++|.
T Consensus         1 ~~-~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~----~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            1 HR-KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLP----EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CC-CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC----HHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CC-CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCC----hHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCE
Confidence            54 678999995 9999999999999999999999872    2444444443445789999999999999887 889999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ||...+..  .....+...+++.+...+++-..
T Consensus        75 vi~~~~~d--~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           75 ILALSDND--ADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             EEECSSCH--HHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EEEecCCh--HHHHHHHHHHHHHCCCCEEEEEE
Confidence            99888764  33445566677763245665543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=99.17  E-value=2.3e-10  Score=90.27  Aligned_cols=80  Identities=23%  Similarity=0.297  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |. +++|+|+| +|++|+++++.|++.|++|++.+|+     .++++.+.... .++..+.+|+.|.+++.++++++|+|
T Consensus         1 M~-~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~-----~~~a~~la~~~-~~~~~~~~Dv~d~~~l~~~l~~~DvV   72 (450)
T 1ff9_A            1 MA-TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRT-----LESAKKLSAGV-QHSTPISLDVNDDAALDAEVAKHDLV   72 (450)
T ss_dssp             -C-CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESS-----HHHHHHTTTTC-TTEEEEECCTTCHHHHHHHHTTSSEE
T ss_pred             CC-CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECC-----HHHHHHHHHhc-CCceEEEeecCCHHHHHHHHcCCcEE
Confidence            55 67899998 7999999999999999999999998     55555443221 24778899999999999999999999


Q ss_pred             EEcCCCcc
Q 040431           81 ISTVGHTL   88 (157)
Q Consensus        81 v~~a~~~~   88 (157)
                      ||+++...
T Consensus        73 In~a~~~~   80 (450)
T 1ff9_A           73 ISLIPYTF   80 (450)
T ss_dssp             EECCC--C
T ss_pred             EECCcccc
Confidence            99999753

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=99.15  E-value=3.3e-10  Score=87.07  Aligned_cols=93  Identities=18%  Similarity=0.180  Sum_probs=75.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|||+|+|| |++|+.+++.|.+ .++|.+.+++     .++++.++    ..+..+.+|+.|.+++.+++++.|+||++
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~-----~~~~~~~~----~~~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVN-----NENLEKVK----EFATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESC-----HHHHHHHT----TTSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcC-----HHHHHHHh----ccCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            578999998 9999999999865 5899999887     55554432    34677899999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +++..   ...++++|.+.|  .+++=+|
T Consensus        85 ~p~~~---~~~v~~~~~~~g--~~yvD~s  108 (365)
T 3abi_A           85 LPGFL---GFKSIKAAIKSK--VDMVDVS  108 (365)
T ss_dssp             CCGGG---HHHHHHHHHHHT--CEEEECC
T ss_pred             cCCcc---cchHHHHHHhcC--cceEeee
Confidence            98863   567999999997  4665554

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=99.15  E-value=9.9e-10  Score=72.60  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=74.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      .|+|+|+|+ |.+|+.+++.|.+.|++|++++|+     +++.+.+.+.  .++.++.+|..+++.+.+. +.++|+||+
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~-----~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDID-----KDICKKASAE--IDALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHH--CSSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC-----HHHHHHHHHh--cCcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            578999986 999999999999999999999987     5555444322  2467788999998887765 678999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +.+...  ....+...+.+.+ ..+++..++
T Consensus        76 ~~~~~~--~~~~~~~~~~~~~-~~~ii~~~~  103 (140)
T 1lss_A           76 VTGKEE--VNLMSSLLAKSYG-INKTIARIS  103 (140)
T ss_dssp             CCSCHH--HHHHHHHHHHHTT-CCCEEEECS
T ss_pred             eeCCch--HHHHHHHHHHHcC-CCEEEEEec
Confidence            987642  2345566677776 667776544

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.15  E-value=4.8e-10  Score=85.04  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +|||+|+||+|++|++++..|++.|  ++|+++++++.   ......+.+.. ....+ .. +.+..++.++++++|+||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~---~~~~~dL~~~~-~~~~v-~~-~~~t~d~~~al~gaDvVi   81 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA---PGVTADISHMD-TGAVV-RG-FLGQQQLEAALTGMDLII   81 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH---HHHHHHHHTSC-SSCEE-EE-EESHHHHHHHHTTCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc---HhHHHHhhccc-ccceE-EE-EeCCCCHHHHcCCCCEEE
Confidence            5799999999999999999999988  78999887732   11111122111 11111 11 334567888899999999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |.+|...             ...++++++++.+.+ ...+++++|.
T Consensus        82 ~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SN  126 (326)
T 1smk_A           82 VPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISN  126 (326)
T ss_dssp             ECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCS
T ss_pred             EcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC
Confidence            9998764             366888999999987 6667777663

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.08  E-value=6.4e-10  Score=86.70  Aligned_cols=82  Identities=20%  Similarity=0.217  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh-CCCcEEEEecCCCCCCCc----------hh-hHhhhhcCCCeEEEEccCCChHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPS----------KS-QLLDHFKNLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~----------~~-~~~~~~~~~~v~~~~~D~~~~~~~~   71 (157)
                      .++++||||+++||.++++.|++ .|++|++++|+.......          .. +.+. .....+..+.+|++|++++.
T Consensus        61 gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~-~~G~~a~~i~~Dvtd~~~v~  139 (422)
T 3s8m_A           61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAK-AAGLYSKSINGDAFSDAARA  139 (422)
T ss_dssp             CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHH-HTTCCEEEEESCTTSHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHH-hcCCcEEEEEecCCCHHHHH
Confidence            57899999999999999999999 999999999886554221          01 1222 22456788999999998887


Q ss_pred             HHhc--------CcCEEEEcCCC
Q 040431           72 KAIK--------QVDVVISTVGH   86 (157)
Q Consensus        72 ~~~~--------~~d~vv~~a~~   86 (157)
                      ++++        ++|++|||||.
T Consensus       140 ~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          140 QVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHSCSCEEEEEECCCC
T ss_pred             HHHHHHHHHcCCCCCEEEEcCcc
Confidence            7653        47999999987

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.03  E-value=2.2e-09  Score=85.06  Aligned_cols=77  Identities=23%  Similarity=0.331  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +++|+|+|+ |++|+++++.|++. |++|++++|+     .++++.+...  .++..+.+|+.|.+++.++++++|+|||
T Consensus        23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~-----~~ka~~la~~--~~~~~~~~D~~d~~~l~~~l~~~DvVIn   94 (467)
T 2axq_A           23 GKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRT-----LANAQALAKP--SGSKAISLDVTDDSALDKVLADNDVVIS   94 (467)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESS-----HHHHHHHHGG--GTCEEEECCTTCHHHHHHHHHTSSEEEE
T ss_pred             CCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECC-----HHHHHHHHHh--cCCcEEEEecCCHHHHHHHHcCCCEEEE
Confidence            568999997 99999999999998 6899999998     6666555433  2567788999999999999999999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      +++...
T Consensus        95 ~tp~~~  100 (467)
T 2axq_A           95 LIPYTF  100 (467)
T ss_dssp             CSCGGG
T ss_pred             CCchhh
Confidence            999863

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.03  E-value=4.1e-10  Score=85.51  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=72.9

Q ss_pred             CCC-CCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCCCCCchhhH-hhhhcCCCeEEEEccCCChHHHH
Q 040431            1 MAS-KSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTISGPSKSQL-LDHFKNLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         1 M~~-~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~~~   71 (157)
                      |++ +|||+||||+|++|++++..|+..|.       +|++++++.... .++.+- ..++.+....+ ..|+....++.
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~-~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~   78 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKA-QKALQGVMMEIDDCAFPL-LAGMTAHADPM   78 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHH-HHHHHHHHHHHHTTTCTT-EEEEEEESSHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccc-cccchhhHHHHhhhcccc-cCcEEEecCcH
Confidence            532 57999999999999999999999885       788876651000 011111 11111111111 23555556677


Q ss_pred             HHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc-CCccEEEecc
Q 040431           72 KAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAE-GASRGTLRTQ  113 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~-~~~~~v~~Ss  113 (157)
                      ++++++|+|||.||...             ...++++++++.+.+ ...+|+++|.
T Consensus        79 ~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           79 TAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            88999999999999765             455788999998883 3458888875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.93  E-value=3.7e-08  Score=66.64  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      .++|+|+|+ |.+|+.+++.|.+.|++|++++|+     +++.+.+..  ..++.++.+|..+++.+.++ +.++|+||.
T Consensus        19 ~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~-----~~~~~~~~~--~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~   90 (155)
T 2g1u_A           19 SKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKN-----EYAFHRLNS--EFSGFTVVGDAAEFETLKECGMEKADMVFA   90 (155)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----GGGGGGSCT--TCCSEEEESCTTSHHHHHTTTGGGCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECC-----HHHHHHHHh--cCCCcEEEecCCCHHHHHHcCcccCCEEEE
Confidence            468999995 999999999999999999999998     555443321  23566788999888877765 678999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +.+...  ....++..++..++..+++...+.
T Consensus        91 ~~~~~~--~~~~~~~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           91 FTNDDS--TNFFISMNARYMFNVENVIARVYD  120 (155)
T ss_dssp             CSSCHH--HHHHHHHHHHHTSCCSEEEEECSS
T ss_pred             EeCCcH--HHHHHHHHHHHHCCCCeEEEEECC
Confidence            988643  344556666663325566665543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.87  E-value=7.7e-08  Score=64.03  Aligned_cols=95  Identities=20%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      +++|+|+|+ |.+|+.+++.|.+.|++|++++++     +++.+.+.+   .++.++.+|.++++.+.++ +.++|+||.
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~-----~~~~~~~~~---~g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETS-----RTRVDELRE---RGVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESC-----HHHHHHHHH---TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECC-----HHHHHHHHH---cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            468999995 999999999999999999999998     766665543   4678899999999988876 568999998


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEE
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGT  109 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v  109 (157)
                      ..+...  ....++..+++.+...+++
T Consensus        78 ~~~~~~--~n~~~~~~a~~~~~~~~ii  102 (140)
T 3fwz_A           78 TIPNGY--EAGEIVASARAKNPDIEII  102 (140)
T ss_dssp             CCSCHH--HHHHHHHHHHHHCSSSEEE
T ss_pred             ECCChH--HHHHHHHHHHHHCCCCeEE
Confidence            877643  3334555666654233443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.86  E-value=3.7e-08  Score=70.21  Aligned_cols=97  Identities=16%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      |+|+|+|+ |.+|+++++.|.+.|++|++++++     +++.+.+.+.  .++.++.+|.++++.+.++ +.++|+||.+
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~-----~~~~~~l~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKD-----RELCEEFAKK--LKATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESC-----HHHHHHHHHH--SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC-----HHHHHHHHHH--cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            47999996 999999999999999999999988     6666554432  2578899999999999887 7789999987


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      .+...  ....++..+++..+..+++-.
T Consensus        73 ~~~d~--~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           73 TPRDE--VNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             CSCHH--HHHHHHHHHHHTSCCCEEEEC
T ss_pred             cCCcH--HHHHHHHHHHHHcCCCeEEEE
Confidence            77642  334455555553325555543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.85  E-value=1.9e-08  Score=75.84  Aligned_cols=100  Identities=21%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhH----hhhh---cCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQL----LDHF---KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~----~~~~---~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |||+||||+|++|++++..|+..|.  ++..+++...   +++++.    +.+.   ...++.+...    .+++.++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~---~~~~~~~~~dl~~~~~~~~~~~~i~~~----~d~l~~al~   73 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS---INKLEGLREDIYDALAGTRSDANIYVE----SDENLRIID   73 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG---HHHHHHHHHHHHHHHTTSCCCCEEEEE----ETTCGGGGT
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCc---hhhhHHHHHHHHHhHHhcCCCeEEEeC----CcchHHHhC
Confidence            4899999999999999999998874  5777776210   222221    1111   1112233221    123556688


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEecc
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++|+|||.||...             ...++++++++.+.+  ..+++++|
T Consensus        74 gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~S  122 (313)
T 1hye_A           74 ESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVIT  122 (313)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            9999999999764             556889999999986  44555554

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=98.84  E-value=6.7e-08  Score=89.79  Aligned_cols=83  Identities=8%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCCc-chHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGY-IGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~-iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+++ ||.++++.|++.|++|++++|+......+.++.+ ++..  ...+..+.+|++|++++.++++    
T Consensus      2136 gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i~~ 2215 (3089)
T 3zen_D         2136 DEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWVGT 2215 (3089)
T ss_dssp             CCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHHHh
Confidence            578999999999 9999999999999999999988321000002222 2222  2357788999999999887743    


Q ss_pred             -------CcCEEEEcCCC
Q 040431           76 -------QVDVVISTVGH   86 (157)
Q Consensus        76 -------~~d~vv~~a~~   86 (157)
                             ++|++|||||.
T Consensus      2216 ~~~~~fG~IDILVNNAGi 2233 (3089)
T 3zen_D         2216 EQTESLGPQSIHLKDAQT 2233 (3089)
T ss_dssp             CCEEEESSSEEEECCCCC
T ss_pred             hhhhhcCCCCEEEECCCc
Confidence                   47999999997

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=98.82  E-value=2.5e-08  Score=76.88  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHH-hCCCcEEEEecCCCCCCCch----------hhHhhhhcCCCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASV-KAGHPTFVLVRESTISGPSK----------SQLLDHFKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~-~~g~~v~~~~r~~~~~~~~~----------~~~~~~~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      +|++|||||++++|.+.+..|. ..|..++++.+.....+...          .....+........+.+|+++++++.+
T Consensus        50 pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i~~  129 (401)
T 4ggo_A           50 PKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIKAQ  129 (401)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHHHH
Confidence            5789999999999999999998 67999999988765542211          111122234567889999999999888


Q ss_pred             Hhc-------CcCEEEEcCCCc
Q 040431           73 AIK-------QVDVVISTVGHT   87 (157)
Q Consensus        73 ~~~-------~~d~vv~~a~~~   87 (157)
                      +++       ++|++||+++..
T Consensus       130 vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          130 VIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHhcCCCCEEEEecccc
Confidence            875       699999999976

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.80  E-value=7e-09  Score=77.88  Aligned_cols=97  Identities=15%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEec--CCCCCCCchhhH----hhhh--cCCCeEEEEccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVR--ESTISGPSKSQL----LDHF--KNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r--~~~~~~~~~~~~----~~~~--~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      |||+|+||+|++|++++..|+..+.  ++.++++  +     +++++.    +.+.  ...++.+...   +    .+.+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~-----~~~~~~~~~dl~~~~~~~~~~~v~~~---~----~~a~   68 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDK-----EDDTVGQAADTNHGIAYDSNTRVRQG---G----YEDT   68 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGG-----HHHHHHHHHHHHHHHTTTCCCEEEEC---C----GGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCC-----hhhHHHHHHHHHHHHhhCCCcEEEeC---C----HHHh
Confidence            5899999999999999999998875  5777777  4     332221    1111  1223444432   2    3457


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +++|+|||.|+...             ...++++++++.+.+ ...+++++|-
T Consensus        69 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SN  120 (303)
T 1o6z_A           69 AGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSN  120 (303)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCS
T ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            89999999999765             356888999999987 6677777653

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.80  E-value=3.1e-08  Score=71.41  Aligned_cols=75  Identities=21%  Similarity=0.389  Sum_probs=54.7

Q ss_pred             CCCeEEEEcC----------------CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC
Q 040431            3 SKSKILFIGG----------------TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN   66 (157)
Q Consensus         3 ~~~~ilitGa----------------tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~   66 (157)
                      ..++|+||||                ||.+|.++++++.+.|++|+++.|+.... +        ....++..+  |+..
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~-~--------~~~~~~~~~--~v~s   70 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALK-P--------EPHPNLSIR--EITN   70 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCC-C--------CCCTTEEEE--ECCS
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-c--------cCCCCeEEE--EHhH
Confidence            4689999999                99999999999999999999999874321 1        001244444  4555


Q ss_pred             hHHHHH----HhcCcCEEEEcCCCcc
Q 040431           67 HESLVK----AIKQVDVVISTVGHTL   88 (157)
Q Consensus        67 ~~~~~~----~~~~~d~vv~~a~~~~   88 (157)
                      .+++.+    .+.++|++||+|+...
T Consensus        71 ~~em~~~v~~~~~~~Dili~aAAvsD   96 (232)
T 2gk4_A           71 TKDLLIEMQERVQDYQVLIHSMAVSD   96 (232)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECSBCCS
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCcccc
Confidence            544443    3457999999999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.78  E-value=8.8e-08  Score=66.37  Aligned_cols=96  Identities=15%  Similarity=0.222  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH--hcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA--IKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~--~~~~d~v   80 (157)
                      .++|+|+| .|.+|..+++.|.+. |++|++++++     +++.+.+.+   .++.++.+|.++++.+.++  +.++|+|
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~-----~~~~~~~~~---~g~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIR-----EEAAQQHRS---EGRNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESC-----HHHHHHHHH---TTCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECC-----HHHHHHHHH---CCCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            45899999 599999999999999 9999999998     666655433   3577888999999888887  7789999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      |.+.+..  .....++..+++.+...+++.
T Consensus       110 i~~~~~~--~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          110 LLAMPHH--QGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             EECCSSH--HHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEeCCCh--HHHHHHHHHHHHHCCCCEEEE
Confidence            9877753  344556667777652334443

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.77  E-value=5e-08  Score=70.13  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             CCeEEEEcC----------------CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh
Q 040431            4 KSKILFIGG----------------TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGa----------------tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   67 (157)
                      .++++||||                ||.+|.+++++|.+.|++|++++++..-. .          ..++.  .+|+.+.
T Consensus         8 gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~-~----------~~g~~--~~dv~~~   74 (226)
T 1u7z_A            8 HLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP-T----------PPFVK--RVDVMTA   74 (226)
T ss_dssp             TCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC-C----------CTTEE--EEECCSH
T ss_pred             CCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccc-c----------CCCCe--EEccCcH
Confidence            578999999                79999999999999999999988764211 0          11232  4688877


Q ss_pred             HHHHHHh----cCcCEEEEcCCCcc
Q 040431           68 ESLVKAI----KQVDVVISTVGHTL   88 (157)
Q Consensus        68 ~~~~~~~----~~~d~vv~~a~~~~   88 (157)
                      +++.+.+    .++|++||+||...
T Consensus        75 ~~~~~~v~~~~~~~Dili~~Aav~d   99 (226)
T 1u7z_A           75 LEMEAAVNASVQQQNIFIGCAAVAD   99 (226)
T ss_dssp             HHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             HHHHHHHHHhcCCCCEEEECCcccC
Confidence            6665543    47999999999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.73  E-value=1.9e-08  Score=70.58  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH---hc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA---IK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~---~~--~~d   78 (157)
                      .++++|+||+|.+|.++++.+...|++|++++|+     +++.+.+.+..   ... ..|..+.+..+.+   ..  ++|
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~-----~~~~~~~~~~g---~~~-~~d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS-----DAKREMLSRLG---VEY-VGDSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHTTC---CSE-EEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcC---CCE-EeeCCcHHHHHHHHHHhCCCCCe
Confidence            4689999999999999999999999999999887     55555444332   222 2466655433333   32  589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|+++|..   .....++.+...   ++++.+++..
T Consensus       110 ~vi~~~g~~---~~~~~~~~l~~~---G~~v~~g~~~  140 (198)
T 1pqw_A          110 VVLNSLAGE---AIQRGVQILAPG---GRFIELGKKD  140 (198)
T ss_dssp             EEEECCCTH---HHHHHHHTEEEE---EEEEECSCGG
T ss_pred             EEEECCchH---HHHHHHHHhccC---CEEEEEcCCC
Confidence            999999842   233444444332   5899888754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.70  E-value=1.1e-07  Score=68.51  Aligned_cols=94  Identities=18%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      .++++|+|+ |.+|+.+++.|.+.|+ |++++++     +++.+.+.    .++.++.+|.+|++.+.++ +.++|.||.
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~-----~~~~~~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDE-----NVRKKVLR----SGANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCG-----GGHHHHHH----TTCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECC-----HHHHHHHh----cCCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            468999996 9999999999999999 9999888     66655443    4688999999999999887 789999998


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCc-cEEEe
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGAS-RGTLR  111 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~-~~v~~  111 (157)
                      ..+..  .....++..+++.+ .. +++-.
T Consensus        78 ~~~~d--~~n~~~~~~a~~~~-~~~~iia~  104 (234)
T 2aef_A           78 DLESD--SETIHCILGIRKID-ESVRIIAE  104 (234)
T ss_dssp             CCSCH--HHHHHHHHHHHHHC-SSSEEEEE
T ss_pred             cCCCc--HHHHHHHHHHHHHC-CCCeEEEE
Confidence            77654  33445666677776 43 44443

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.65  E-value=3.1e-07  Score=69.20  Aligned_cols=101  Identities=18%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhhhcCC-CeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDHFKNL-GVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |||.|+||+|++|+.++..|+..|  .+|++++++.  . ......+.+.... ++....    ..++++++++++|+||
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~-~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~~aDvVv   73 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--T-PGVAADLSHIETRATVKGYL----GPEQLPDCLKGCDVVV   73 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--H-HHHHHHHTTSSSSCEEEEEE----SGGGHHHHHTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--c-HHHHHHHhccCcCceEEEec----CCCCHHHHhCCCCEEE
Confidence            489999999999999999999888  6899999883  1 1111122221111 111110    1245677889999999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +.+|...             ....+.+++.+.+.....+++++|
T Consensus        74 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s  117 (314)
T 1mld_A           74 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS  117 (314)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             ECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            9998765             245677788877776335777765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=98.63  E-value=1.6e-07  Score=74.23  Aligned_cols=100  Identities=14%  Similarity=0.214  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEE
Q 040431            2 ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVV   80 (157)
Q Consensus         2 ~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~v   80 (157)
                      |+.|+|+|.|+ |-+|+++++.|.+.|++|++++++     +++++.+.+..  ++..+.+|.++++.++++ ++++|.+
T Consensus         1 ~~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d-----~~~~~~~~~~~--~~~~i~Gd~~~~~~L~~Agi~~ad~~   72 (461)
T 4g65_A            1 SNAMKIIILGA-GQVGGTLAENLVGENNDITIVDKD-----GDRLRELQDKY--DLRVVNGHASHPDVLHEAGAQDADML   72 (461)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESC-----HHHHHHHHHHS--SCEEEESCTTCHHHHHHHTTTTCSEE
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECC-----HHHHHHHHHhc--CcEEEEEcCCCHHHHHhcCCCcCCEE
Confidence            35789999996 999999999999999999999998     77776654332  578999999999999988 6789999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      |-..+..  +.....+..+++.+..++++-.
T Consensus        73 ia~t~~D--e~Nl~~~~~Ak~~~~~~~~iar  101 (461)
T 4g65_A           73 VAVTNTD--ETNMAACQVAFTLFNTPNRIAR  101 (461)
T ss_dssp             EECCSCH--HHHHHHHHHHHHHHCCSSEEEE
T ss_pred             EEEcCCh--HHHHHHHHHHHHhcCCccceeE
Confidence            8655442  2333344455555325555544

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.49  E-value=1.6e-07  Score=70.81  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH---hc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA---IK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~---~~--~~d   78 (157)
                      .++++|+||+|.+|..+++.+...|++|++++++     +++.+.+.+.. ..   ...|..+.+..+++   ..  ++|
T Consensus       141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~-----~~~~~~~~~~g-~~---~~~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGT-----AQKAQSALKAG-AW---QVINYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHHHT-CS---EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcC-CC---EEEECCCccHHHHHHHHhCCCCce
Confidence            4689999999999999999999999999999987     66666555542 11   22466554433333   22  589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|+++|..   .....++.+...   ++++.+++..
T Consensus       212 ~vi~~~g~~---~~~~~~~~l~~~---G~iv~~g~~~  242 (327)
T 1qor_A          212 VVYDSVGRD---TWERSLDCLQRR---GLMVSFGNSS  242 (327)
T ss_dssp             EEEECSCGG---GHHHHHHTEEEE---EEEEECCCTT
T ss_pred             EEEECCchH---HHHHHHHHhcCC---CEEEEEecCC
Confidence            999999932   233444444432   5888887643

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.49  E-value=1.9e-07  Score=70.56  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~--~~d   78 (157)
                      ..+++|+||+|.+|..+++.+...|++|++++++     +++.+.+++.. ..   ...|..+.+.   +.+...  ++|
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~-----~~~~~~~~~~g-~~---~~~d~~~~~~~~~i~~~~~~~~~d  216 (333)
T 1wly_A          146 GDYVLIHAAAGGMGHIMVPWARHLGATVIGTVST-----EEKAETARKLG-CH---HTINYSTQDFAEVVREITGGKGVD  216 (333)
T ss_dssp             TCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHT-CS---EEEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcC-CC---EEEECCCHHHHHHHHHHhCCCCCe
Confidence            4689999999999999999999999999999988     66666555442 11   2246655433   333332  689


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|+++|...   ....++.+...   ++++.++...
T Consensus       217 ~vi~~~g~~~---~~~~~~~l~~~---G~iv~~g~~~  247 (333)
T 1wly_A          217 VVYDSIGKDT---LQKSLDCLRPR---GMCAAYGHAS  247 (333)
T ss_dssp             EEEECSCTTT---HHHHHHTEEEE---EEEEECCCTT
T ss_pred             EEEECCcHHH---HHHHHHhhccC---CEEEEEecCC
Confidence            9999999732   33444444332   4788887543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.49  E-value=1.8e-07  Score=71.04  Aligned_cols=105  Identities=16%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--c-----EEEEecCCCCCCCchhhH-hhhhcCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--P-----TFVLVRESTISGPSKSQL-LDHFKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~-----v~~~~r~~~~~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .+||+||||+|++|++++..|+..+.  +     ++++++...   .++++- ..++.+....+. .++.......+.++
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~---~~~~~g~a~DL~~~~~~~~-~~~~~~~~~~~~~~   78 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM---MGVLDGVLMELQDCALPLL-KDVIATDKEEIAFK   78 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG---HHHHHHHHHHHHHTCCTTE-EEEEEESCHHHHTT
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCc---cccchhhHhhhHhhhhccc-CCEEEcCCcHHHhC
Confidence            57999999999999999999998774  5     888887621   112211 111111110011 12222233456688


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCc-cEEEec
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGAS-RGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~-~~v~~S  112 (157)
                      ++|+||+.||...             ....+.+++++.+.+... +++.+|
T Consensus        79 daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvs  129 (333)
T 5mdh_A           79 DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (333)
T ss_dssp             TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence            9999999998754             455788899998887223 466665

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.49  E-value=2.2e-07  Score=70.62  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      .++++|+||+|.+|..+++.+...|++|++++|+     +++.+.+++..   .. ...|+.+.+++.+.+.     ++|
T Consensus       170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~-----~~~~~~~~~~g---~~-~~~d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG-----EGKEELFRSIG---GE-VFIDFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS-----TTHHHHHHHTT---CC-EEEETTTCSCHHHHHHHHHTSCEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC-----HHHHHHHHHcC---Cc-eEEecCccHhHHHHHHHHhCCCCC
Confidence            4689999999999999999999999999999987     55555554432   22 2247664444443332     589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|+++|...  .....++.+..   .++++.+++..
T Consensus       241 ~vi~~~g~~~--~~~~~~~~l~~---~G~iv~~g~~~  272 (347)
T 2hcy_A          241 GVINVSVSEA--AIEASTRYVRA---NGTTVLVGMPA  272 (347)
T ss_dssp             EEEECSSCHH--HHHHHTTSEEE---EEEEEECCCCT
T ss_pred             EEEECCCcHH--HHHHHHHHHhc---CCEEEEEeCCC
Confidence            9999998631  22333333332   25788887643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.49  E-value=4.1e-07  Score=69.96  Aligned_cols=100  Identities=17%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |.+|+.+++.+...|++|++++|+     +++.+.+.+.....   +.+|..+.+++.+.++++|+||++
T Consensus       166 ~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~-----~~~~~~~~~~~g~~---~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          166 PASVVILGG-GTVGTNAAKIALGMGAQVTILDVN-----HKRLQYLDDVFGGR---VITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTTTS---EEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHhcCce---EEEecCCHHHHHHHHhCCCEEEEC
Confidence            478999998 999999999999999999999988     66655444322222   456777888899999999999999


Q ss_pred             CCCcchH----HHHHHHHHHHHhcCCccEEEecccc
Q 040431           84 VGHTLLA----DQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        84 a~~~~~~----~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++.....    .....++.++.   ...++.+|+..
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~---gg~iV~v~~~~  269 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKE---GAVIVDVAVDQ  269 (369)
T ss_dssp             CC-------CCSCHHHHTTSCT---TCEEEECC---
T ss_pred             CCCCccccchhHHHHHHHhhcC---CCEEEEEecCC
Confidence            9865310    12344444432   35789888754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.48  E-value=1.8e-07  Score=70.71  Aligned_cols=98  Identities=14%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      .++++|+||+|.+|..+++.+...|++|++++++     +++.+.+++..   .. ..+|..+.+++.+.+.     ++|
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~-----~~~~~~~~~~g---~~-~~~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKIAYLKQIG---FD-AAFNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             SCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTT---CS-EEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHhcC---Cc-EEEecCCHHHHHHHHHHHhCCCCe
Confidence            4689999999999999999999999999999887     66665554432   11 2346665333333332     589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      ++|+++|..   .....++.++.   .++++.++....
T Consensus       217 ~vi~~~g~~---~~~~~~~~l~~---~G~~v~~g~~~~  248 (333)
T 1v3u_A          217 CYFDNVGGE---FLNTVLSQMKD---FGKIAICGAISV  248 (333)
T ss_dssp             EEEESSCHH---HHHHHHTTEEE---EEEEEECCCCC-
T ss_pred             EEEECCChH---HHHHHHHHHhc---CCEEEEEecccc
Confidence            999999962   12223333322   258888876543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.48  E-value=1.6e-06  Score=67.67  Aligned_cols=89  Identities=20%  Similarity=0.364  Sum_probs=73.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      +++|+|+|. |.+|+.+++.|.+.|++|++++++     +++++.+..   .++.++.+|.++++.+.++ +.++|+||.
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d-----~~~v~~~~~---~g~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHD-----PDHIETLRK---FGMKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECC-----HHHHHHHHH---TTCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECC-----HHHHHHHHh---CCCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            578999995 999999999999999999999999     776665543   3678899999999999888 779999998


Q ss_pred             cCCCcchHHHHHHHHHHHHhc
Q 040431           83 TVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +.+.  ......++..+++.+
T Consensus        75 ~~~~--~~~n~~i~~~ar~~~   93 (413)
T 3l9w_A           75 AIDD--PQTNLQLTEMVKEHF   93 (413)
T ss_dssp             CCSS--HHHHHHHHHHHHHHC
T ss_pred             CCCC--hHHHHHHHHHHHHhC
Confidence            7765  345666777788776

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.46  E-value=1.3e-07  Score=67.00  Aligned_cols=76  Identities=18%  Similarity=0.163  Sum_probs=52.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |+|+|+||+|++|+++++.|.+.|++|++++|+     +++.+.+.+.....+.  ..|+. .+++.++++++|+||+++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~-----~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR-----EEKAEAKAAEYRRIAG--DASIT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS-----HHHHHHHHHHHHHHHS--SCCEE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHhccccc--cCCCC-hhhHHHHHhcCCEEEEeC
Confidence            479999999999999999999999999999988     5554433321110000  01222 234556677899999998


Q ss_pred             CCcc
Q 040431           85 GHTL   88 (157)
Q Consensus        85 ~~~~   88 (157)
                      ....
T Consensus        73 ~~~~   76 (212)
T 1jay_A           73 PWEH   76 (212)
T ss_dssp             CHHH
T ss_pred             Chhh
Confidence            8643

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.42  E-value=7e-07  Score=68.28  Aligned_cols=98  Identities=12%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-----C-cEEEEecCCCCCCCchhhHh-hhhcC-CCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-----H-PTFVLVRESTISGPSKSQLL-DHFKN-LGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-----~-~v~~~~r~~~~~~~~~~~~~-~~~~~-~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |++|.|.||||++|+.+++.|.+++     + +++.+.+.++..  .+.... ..+.. ..+.+.  |+ +++    .+.
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~ag--k~~~~~~~~l~~~~~~~~~--~~-~~~----~~~   79 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAG--STLGEHHPHLTPLAHRVVE--PT-EAA----VLG   79 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTT--SBGGGTCTTCGGGTTCBCE--EC-CHH----HHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCC--Cchhhhcccccccceeeec--cC-CHH----Hhc
Confidence            5799999999999999999999887     4 677776543211  111110 01111 122222  22 233    245


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      ++|+||.+++...   +..+++.+ +.|  .++|-+|+...
T Consensus        80 ~~DvVf~alg~~~---s~~~~~~~-~~G--~~vIDlSa~~R  114 (352)
T 2nqt_A           80 GHDAVFLALPHGH---SAVLAQQL-SPE--TLIIDCGADFR  114 (352)
T ss_dssp             TCSEEEECCTTSC---CHHHHHHS-CTT--SEEEECSSTTT
T ss_pred             CCCEEEECCCCcc---hHHHHHHH-hCC--CEEEEECCCcc
Confidence            8999999998864   56778888 776  46888887543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.41  E-value=5.6e-07  Score=68.65  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~--~~d   78 (157)
                      ..+|+|+||+|.+|..+++.+...|++|++++++     +++.+.++++.. .   ..+|..+.+.   +.+...  ++|
T Consensus       163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~g~-~---~~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          163 GDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGS-----QKKLQMAEKLGA-A---AGFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTC-S---EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCC-c---EEEecCChHHHHHHHHHhcCCCce
Confidence            4689999999999999999999999999999988     666665554422 1   2345555433   333332  589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|+++|...   ....++.+...   ++++.++..
T Consensus       234 ~vi~~~G~~~---~~~~~~~l~~~---G~iv~~G~~  263 (354)
T 2j8z_A          234 LILDCIGGSY---WEKNVNCLALD---GRWVLYGLM  263 (354)
T ss_dssp             EEEESSCGGG---HHHHHHHEEEE---EEEEECCCT
T ss_pred             EEEECCCchH---HHHHHHhccCC---CEEEEEecc
Confidence            9999999742   33344444332   578888754

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.39  E-value=1.2e-06  Score=66.92  Aligned_cols=98  Identities=10%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhH-hhhhcC-CCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQL-LDHFKN-LGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~-~~~~~~-~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |++|++|.|.||||++|+.+++.|.+++. +++.+.+..+.  ..+... ...+.. ..+     .+.+.+   + +.++
T Consensus         1 M~~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~--g~~~~~~~~~~~g~~~~-----~~~~~~---~-~~~v   69 (345)
T 2ozp_A            1 MTGKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFA--GEPVHFVHPNLRGRTNL-----KFVPPE---K-LEPA   69 (345)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTT--TSBGGGTCGGGTTTCCC-----BCBCGG---G-CCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhh--CchhHHhCchhcCcccc-----cccchh---H-hcCC
Confidence            65578999999999999999999998764 77777664322  111111 011111 111     122332   2 4789


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |+||.+++...   ...++..+.+.|  .++|-+|+.
T Consensus        70 DvV~~a~g~~~---s~~~a~~~~~aG--~~VId~Sa~  101 (345)
T 2ozp_A           70 DILVLALPHGV---FAREFDRYSALA--PVLVDLSAD  101 (345)
T ss_dssp             SEEEECCCTTH---HHHTHHHHHTTC--SEEEECSST
T ss_pred             CEEEEcCCcHH---HHHHHHHHHHCC--CEEEEcCcc
Confidence            99999998874   667777777877  358888774

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.38  E-value=5.5e-07  Score=68.67  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhc-CcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIK-QVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~-~~d~   79 (157)
                      .+++|+||+|.+|..+++.+...|+ +|++++++     +++.+.+.+....  . ..+|..+.+.   +.+... ++|+
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~-----~~~~~~~~~~~g~--~-~~~d~~~~~~~~~~~~~~~~~~d~  233 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGT-----HEKCILLTSELGF--D-AAINYKKDNVAEQLRESCPAGVDV  233 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTSCC--S-EEEETTTSCHHHHHHHHCTTCEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCC-----HHHHHHHHHHcCC--c-eEEecCchHHHHHHHHhcCCCCCE
Confidence            7899999999999999999999999 99999987     6666555431121  1 2346655432   222222 5899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      +|+++|.   ......++.+..   .++++.++....
T Consensus       234 vi~~~G~---~~~~~~~~~l~~---~G~iv~~G~~~~  264 (357)
T 2zb4_A          234 YFDNVGG---NISDTVISQMNE---NSHIILCGQISQ  264 (357)
T ss_dssp             EEESCCH---HHHHHHHHTEEE---EEEEEECCCGGG
T ss_pred             EEECCCH---HHHHHHHHHhcc---CcEEEEECCccc
Confidence            9999994   223333443333   258888876543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.37  E-value=1.3e-06  Score=66.16  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      ++++|+|+ |.+|+.+++.|.+.|+ |++++++     +++.+ +.+   .++.++.+|.+|++.++++ ++++|.++-.
T Consensus       116 ~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~-----~~~~~-~~~---~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~  184 (336)
T 1lnq_A          116 RHVVICGW-SESTLECLRELRGSEV-FVLAEDE-----NVRKK-VLR---SGANFVHGDPTRVSDLEKANVRGARAVIVD  184 (336)
T ss_dssp             CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCG-----GGHHH-HHH---TTCEEEESCTTSHHHHHHTCSTTEEEEEEC
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCC-----hhhhh-HHh---CCcEEEEeCCCCHHHHHhcChhhccEEEEc
Confidence            57999995 9999999999999999 9999888     66665 432   5689999999999999988 7899999987


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .+..  .....++..+++.+
T Consensus       185 ~~~d--~~n~~~~~~ar~~~  202 (336)
T 1lnq_A          185 LESD--SETIHCILGIRKID  202 (336)
T ss_dssp             CSSH--HHHHHHHHHHHTTC
T ss_pred             CCcc--HHHHHHHHHHHHHC
Confidence            7653  34455566667766

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.36  E-value=8.6e-07  Score=67.60  Aligned_cols=95  Identities=11%  Similarity=0.135  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHH---HHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLV---KAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~---~~~~--~~d   78 (157)
                      ..+++|+||+|.+|..+++.+...|++|++++++     +++.+.+++...   . ..+|..+.+..+   +...  ++|
T Consensus       171 g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~ga---~-~~~d~~~~~~~~~~~~~~~~~~~D  241 (351)
T 1yb5_A          171 GESVLVHGASGGVGLAACQIARAYGLKILGTAGT-----EEGQKIVLQNGA---H-EVFNHREVNYIDKIKKYVGEKGID  241 (351)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTC---S-EEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             cCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-----hhHHHHHHHcCC---C-EEEeCCCchHHHHHHHHcCCCCcE
Confidence            4689999999999999999999999999999988     666665544421   1 224665544333   3333  699


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++|+++|..   .....++.+..   .++++.++.
T Consensus       242 ~vi~~~G~~---~~~~~~~~l~~---~G~iv~~g~  270 (351)
T 1yb5_A          242 IIIEMLANV---NLSKDLSLLSH---GGRVIVVGS  270 (351)
T ss_dssp             EEEESCHHH---HHHHHHHHEEE---EEEEEECCC
T ss_pred             EEEECCChH---HHHHHHHhccC---CCEEEEEec
Confidence            999999863   12233333333   257888764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.36  E-value=5.6e-07  Score=68.58  Aligned_cols=99  Identities=12%  Similarity=0.096  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhH----hhhhcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQL----LDHFKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      ++||.|+|++|++|+.++..++..|  .+|++++.+     .++++-    +.+.....     .++.-..+..+.++++
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~-----~~k~~g~a~DL~~~~~~~-----~~i~~t~d~~~al~dA   77 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF-----AVGLEGVAEEIRHCGFEG-----LNLTFTSDIKEALTDA   77 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC-----HHHHHHHHHHHHHHCCTT-----CCCEEESCHHHHHTTE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC-----chhHHHHHHhhhhCcCCC-----CceEEcCCHHHHhCCC
Confidence            6799999999999999999999988  489999886     444432    22211111     1111122345668899


Q ss_pred             CEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCcc-EEEec
Q 040431           78 DVVISTVGHTL-------------LADQVKIIAAIKEAEGASR-GTLRT  112 (157)
Q Consensus        78 d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~-~v~~S  112 (157)
                      |+||..||...             ....+.+.+.+.+...... ++.+|
T Consensus        78 DvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs  126 (343)
T 3fi9_A           78 KYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF  126 (343)
T ss_dssp             EEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred             CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence            99999998764             2336667777777752233 45554

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=98.35  E-value=1.6e-06  Score=65.98  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |+++++|.|.||||++|+.+++.|.++++   +++.+....+..  ...    .+....+.+.  |. +++    .+.++
T Consensus         3 M~m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g--~~~----~~~g~~i~~~--~~-~~~----~~~~~   69 (340)
T 2hjs_A            3 MSQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG--QRM----GFAESSLRVG--DV-DSF----DFSSV   69 (340)
T ss_dssp             --CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT--CEE----EETTEEEECE--EG-GGC----CGGGC
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCC--Ccc----ccCCcceEEe--cC-CHH----HhcCC
Confidence            54357999999999999999999997654   556554321110  000    0111112221  22 222    25689


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |+||.+.+..   .+..+++.+.+.| . ++|-+|+..
T Consensus        70 DvV~~a~g~~---~s~~~a~~~~~aG-~-kvId~Sa~~  102 (340)
T 2hjs_A           70 GLAFFAAAAE---VSRAHAERARAAG-C-SVIDLSGAL  102 (340)
T ss_dssp             SEEEECSCHH---HHHHHHHHHHHTT-C-EEEETTCTT
T ss_pred             CEEEEcCCcH---HHHHHHHHHHHCC-C-EEEEeCCCC
Confidence            9999998875   3667888888887 4 467777643

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.32  E-value=1.3e-06  Score=66.25  Aligned_cols=97  Identities=9%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~--~~d   78 (157)
                      ..+++|+||+|.+|..+++.+...|++|++++++     +++.+.+.++..   .. ..|..+.+   .+.++..  ++|
T Consensus       167 g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~-----~~~~~~~~~~ga---~~-~~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          167 GDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGS-----EDKLRRAKALGA---DE-TVNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             TCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHTC---SE-EEETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHhcCC---CE-EEcCCcccHHHHHHHHhCCCCce
Confidence            4689999999999999999999999999999988     666666554421   11 24665543   3333332  689


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|+++|...   ....++.+...   ++++.+++..
T Consensus       238 ~vi~~~g~~~---~~~~~~~l~~~---G~~v~~g~~~  268 (343)
T 2eih_A          238 KVVDHTGALY---FEGVIKATANG---GRIAIAGASS  268 (343)
T ss_dssp             EEEESSCSSS---HHHHHHHEEEE---EEEEESSCCC
T ss_pred             EEEECCCHHH---HHHHHHhhccC---CEEEEEecCC
Confidence            9999999432   33445554443   4888887654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.29  E-value=3.1e-06  Score=63.73  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhh-hhcC-CCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLD-HFKN-LGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~-~~~~-~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++++|+|+ |++|++++..|.+.|. +|++.+|+...  .++++.+. ++.. .++.+...++.+.+++.+.+.++|+|
T Consensus       154 gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~--~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          154 GKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDF--YANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTT--HHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCch--HHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            578999996 8999999999999998 89999998321  23333332 2211 12444556777778888888899999


Q ss_pred             EEcCCCc
Q 040431           81 ISTVGHT   87 (157)
Q Consensus        81 v~~a~~~   87 (157)
                      ||..+..
T Consensus       231 INaTp~G  237 (315)
T 3tnl_A          231 TNATGVG  237 (315)
T ss_dssp             EECSSTT
T ss_pred             EECccCC
Confidence            9988765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.24  E-value=1.6e-06  Score=65.45  Aligned_cols=98  Identities=16%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHh----cCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAI----KQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~----~~~d   78 (157)
                      ..+|+|+||+|.+|..+++.+...|++|++++++     +++.+.+ +++..   . ...|..+.+....+.    .++|
T Consensus       150 g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~~g~---~-~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          150 GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGG-----AEKCRFLVEELGF---D-GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCC---S-EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHcCC---C-EEEECCCHHHHHHHHHhcCCCce
Confidence            5689999999999999999999999999999988     6666665 44422   1 124555543333322    2599


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      ++|+++|..   .....++.+..   .++++.++....
T Consensus       221 ~vi~~~g~~---~~~~~~~~l~~---~G~iv~~G~~~~  252 (336)
T 4b7c_A          221 VFFDNVGGE---ILDTVLTRIAF---KARIVLCGAISQ  252 (336)
T ss_dssp             EEEESSCHH---HHHHHHTTEEE---EEEEEECCCGGG
T ss_pred             EEEECCCcc---hHHHHHHHHhh---CCEEEEEeeccc
Confidence            999999952   22333333333   258888876553

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.23  E-value=3.6e-06  Score=64.37  Aligned_cols=98  Identities=20%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHh-cCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAI-KQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~-~~~d~   79 (157)
                      ..+|+|+||+|.+|..+++.+...|++|++++++     +++.+.++++..   .. ..|..+.+   .+.+.. .++|+
T Consensus       164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-----~~~~~~~~~~Ga---~~-~~~~~~~~~~~~~~~~~~~g~D~  234 (362)
T 2c0c_A          164 GKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSS-----DEKSAFLKSLGC---DR-PINYKTEPVGTVLKQEYPEGVDV  234 (362)
T ss_dssp             TCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTC---SE-EEETTTSCHHHHHHHHCTTCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHcCC---cE-EEecCChhHHHHHHHhcCCCCCE
Confidence            4689999999999999999999999999999987     666666655422   11 23443322   222222 26899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      +|+++|..   .....++.+...   ++++.+++...
T Consensus       235 vid~~g~~---~~~~~~~~l~~~---G~iv~~g~~~~  265 (362)
T 2c0c_A          235 VYESVGGA---MFDLAVDALATK---GRLIVIGFISG  265 (362)
T ss_dssp             EEECSCTH---HHHHHHHHEEEE---EEEEECCCGGG
T ss_pred             EEECCCHH---HHHHHHHHHhcC---CEEEEEeCCCC
Confidence            99999862   233444444443   48888877543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.22  E-value=2.5e-06  Score=64.43  Aligned_cols=96  Identities=15%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~--~~d   78 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++++     +++.+.++++.. .   ...|..+.+   .+.+...  ++|
T Consensus       149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~ga-~---~~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          149 GDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAST-----DEKLKIAKEYGA-E---YLINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTC-S---EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCC-c---EEEeCCCchHHHHHHHHhCCCCce
Confidence            4689999999999999999999999999999987     667666555432 1   123444433   3333332  599


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|+++|..   .....++.+...   ++++.++..
T Consensus       220 ~vid~~g~~---~~~~~~~~l~~~---G~iv~~G~~  249 (334)
T 3qwb_A          220 ASFDSVGKD---TFEISLAALKRK---GVFVSFGNA  249 (334)
T ss_dssp             EEEECCGGG---GHHHHHHHEEEE---EEEEECCCT
T ss_pred             EEEECCChH---HHHHHHHHhccC---CEEEEEcCC
Confidence            999999973   234444544443   478888754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.22  E-value=1.8e-06  Score=65.76  Aligned_cols=97  Identities=14%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHh-cCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAI-KQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~-~~~d~   79 (157)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++     +++.+.++++...    ...|..+.+.   +.++. .++|+
T Consensus       168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~lGa~----~~~~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          168 GESVLIHGGTSGIGTTAIQLARAFGAEVYATAGS-----TGKCEACERLGAK----RGINYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHTCS----EEEETTTSCHHHHHHHHHSSCEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHhcCCC----EEEeCCchHHHHHHHHHhCCCceE
Confidence            4689999999999999999999999999999988     7777666655321    1234444332   22222 26999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +|+++|...   ....++.+...   ++++.++...
T Consensus       239 vid~~g~~~---~~~~~~~l~~~---G~iv~~g~~~  268 (353)
T 4dup_A          239 ILDMIGAAY---FERNIASLAKD---GCLSIIAFLG  268 (353)
T ss_dssp             EEESCCGGG---HHHHHHTEEEE---EEEEECCCTT
T ss_pred             EEECCCHHH---HHHHHHHhccC---CEEEEEEecC
Confidence            999999742   33334433332   5788877543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.19  E-value=3.4e-06  Score=62.11  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=51.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |.+|++++..|.+.|++|++.+|+     .++++.+.+.....-.....|+   +++.+  .++|+||++
T Consensus       119 ~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~-----~~~~~~la~~~~~~~~~~~~~~---~~~~~--~~~DivVn~  187 (271)
T 1nyt_A          119 GLRILLIGA-GGASRGVLLPLLSLDCAVTITNRT-----VSRAEELAKLFAHTGSIQALSM---DELEG--HEFDLIINA  187 (271)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS-----HHHHHHHHHHTGGGSSEEECCS---GGGTT--CCCSEEEEC
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHHHhhccCCeeEecH---HHhcc--CCCCEEEEC
Confidence            578999997 789999999999999999999988     6666544322111001112332   33322  579999999


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      ++...
T Consensus       188 t~~~~  192 (271)
T 1nyt_A          188 TSSGI  192 (271)
T ss_dssp             CSCGG
T ss_pred             CCCCC
Confidence            99864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.19  E-value=4.6e-06  Score=62.31  Aligned_cols=75  Identities=15%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |.+|++++..|.+.|. +|++.+|+     +++++.+.+.......    +..+.+++.+.+.++|+||+
T Consensus       141 ~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~-----~~ka~~la~~~~~~~~----~~~~~~~~~~~~~~aDivIn  210 (297)
T 2egg_A          141 GKRILVIGA-GGGARGIYFSLLSTAAERIDMANRT-----VEKAERLVREGDERRS----AYFSLAEAETRLAEYDIIIN  210 (297)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSS-----HHHHHHHHHHSCSSSC----CEECHHHHHHTGGGCSEEEE
T ss_pred             CCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCC-----HHHHHHHHHHhhhccC----ceeeHHHHHhhhccCCEEEE
Confidence            578999996 8899999999999997 89999998     6676655433222110    12233567777889999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      +.+...
T Consensus       211 ~t~~~~  216 (297)
T 2egg_A          211 TTSVGM  216 (297)
T ss_dssp             CSCTTC
T ss_pred             CCCCCC
Confidence            998764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.16  E-value=4.9e-06  Score=61.44  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=54.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhC-CCcEEE-EecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKA-GHPTFV-LVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~-g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      |+ |++|.|+|++|.+|+.+++.+.+. +.+++. ++|+.+......+..+.... .       ++.-.+++.+++.++|
T Consensus         5 M~-mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-~-------gv~v~~dl~~ll~~~D   75 (272)
T 4f3y_A            5 MS-SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-T-------GVALTDDIERVCAEAD   75 (272)
T ss_dssp             -C-CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-C-------SCBCBCCHHHHHHHCS
T ss_pred             cc-ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-C-------CceecCCHHHHhcCCC
Confidence            54 789999999999999999999876 467765 45553221111111111000 0       1211233445556789


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +||++..+.   .....+..+.+.|
T Consensus        76 VVIDfT~p~---a~~~~~~~al~~G   97 (272)
T 4f3y_A           76 YLIDFTLPE---GTLVHLDAALRHD   97 (272)
T ss_dssp             EEEECSCHH---HHHHHHHHHHHHT
T ss_pred             EEEEcCCHH---HHHHHHHHHHHcC
Confidence            998887543   4556777777776

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.16  E-value=1.8e-06  Score=65.05  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~--~~d   78 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++++     +++.+.++++.. .   ...|..+.+   .+.+...  ++|
T Consensus       141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~Ga-~---~~~~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          141 GEIILFHAAAGGVGSLACQWAKALGAKLIGTVSS-----PEKAAHAKALGA-W---ETIDYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHHHTC-S---EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCC-C---EEEeCCCccHHHHHHHHhCCCCce
Confidence            4689999999999999999999999999999988     677766655432 1   123444433   3333332  699


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|+++|...   ....++.+...   ++++.++...
T Consensus       212 vvid~~g~~~---~~~~~~~l~~~---G~iv~~g~~~  242 (325)
T 3jyn_A          212 VVYDGVGQDT---WLTSLDSVAPR---GLVVSFGNAS  242 (325)
T ss_dssp             EEEESSCGGG---HHHHHTTEEEE---EEEEECCCTT
T ss_pred             EEEECCChHH---HHHHHHHhcCC---CEEEEEecCC
Confidence            9999999732   33344444333   5788887643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.15  E-value=6.6e-06  Score=60.85  Aligned_cols=79  Identities=16%  Similarity=0.235  Sum_probs=55.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ||+|.|+|+||.+|+++++.|.+.|++|++.+|+     +++.+.+.+.   ++.     ..+   ..+.++++|+||.+
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~-----~~~~~~~~~~---g~~-----~~~---~~~~~~~aDvVi~a   74 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA-----PEGRDRLQGM---GIP-----LTD---GDGWIDEADVVVLA   74 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS-----HHHHHHHHHT---TCC-----CCC---SSGGGGTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHhc---CCC-----cCC---HHHHhcCCCEEEEc
Confidence            4699999988999999999999999999999887     6555544432   221     122   22356789999988


Q ss_pred             CCCcchHHHHHHHHHHHH
Q 040431           84 VGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~  101 (157)
                      .....   ...+++.+..
T Consensus        75 v~~~~---~~~v~~~l~~   89 (286)
T 3c24_A           75 LPDNI---IEKVAEDIVP   89 (286)
T ss_dssp             SCHHH---HHHHHHHHGG
T ss_pred             CCchH---HHHHHHHHHH
Confidence            87643   4455555443

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.15  E-value=7.1e-06  Score=62.88  Aligned_cols=97  Identities=14%  Similarity=0.227  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhH-hhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQL-LDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +++|.|.||+|++|+.+++.|.+++. +++.+.+..+.  ..+... ...+.. .+   ..|+...+  .+.+.++|+||
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~--g~~~~~~~~~~~~-~v---~~dl~~~~--~~~~~~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKA--GQSMESVFPHLRA-QK---LPTLVSVK--DADFSTVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTT--TSCHHHHCGGGTT-SC---CCCCBCGG--GCCGGGCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhc--CCCHHHhCchhcC-cc---cccceecc--hhHhcCCCEEE
Confidence            46899999999999999999998764 78777654321  112211 111111 11   13332222  33456899999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .+++...   +......+ +.| . ++|-.|+.
T Consensus        88 ~atp~~~---s~~~a~~~-~aG-~-~VId~sa~  114 (359)
T 1xyg_A           88 CCLPHGT---TQEIIKEL-PTA-L-KIVDLSAD  114 (359)
T ss_dssp             ECCCTTT---HHHHHHTS-CTT-C-EEEECSST
T ss_pred             EcCCchh---HHHHHHHH-hCC-C-EEEECCcc
Confidence            9998764   56677777 666 3 67777774

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.15  E-value=3.2e-06  Score=64.03  Aligned_cols=97  Identities=12%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCChHH----HHHHh-cCc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNHES----LVKAI-KQV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~----~~~~~-~~~   77 (157)
                      ..+++|+||+|.+|..+++.+...|++|++++++     +++.+.+. ++.   .. ...|..+.++    +.++. .++
T Consensus       156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~-----~~~~~~~~~~~g---~~-~~~d~~~~~~~~~~~~~~~~~~~  226 (345)
T 2j3h_A          156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGS-----KEKVDLLKTKFG---FD-DAFNYKEESDLTAALKRCFPNGI  226 (345)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTSC---CS-EEEETTSCSCSHHHHHHHCTTCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHcC---Cc-eEEecCCHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999988     66666554 332   11 1236554322    33222 268


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |++|+++|..   .....++.+..   .++++.++...
T Consensus       227 d~vi~~~g~~---~~~~~~~~l~~---~G~~v~~G~~~  258 (345)
T 2j3h_A          227 DIYFENVGGK---MLDAVLVNMNM---HGRIAVCGMIS  258 (345)
T ss_dssp             EEEEESSCHH---HHHHHHTTEEE---EEEEEECCCGG
T ss_pred             cEEEECCCHH---HHHHHHHHHhc---CCEEEEEcccc
Confidence            9999999862   22333333332   25788876543

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.12  E-value=1.7e-05  Score=58.99  Aligned_cols=38  Identities=16%  Similarity=0.094  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      |+++|+|.|+| .|.+|..+++.|.+.|++|++.+|++.
T Consensus        12 M~~~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           12 TTEQLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             ---CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             ccCCCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            33356899999 699999999999999999999999843

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=98.12  E-value=2.6e-06  Score=63.41  Aligned_cols=95  Identities=16%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++     +++.+.+++..   ... ..|..+.+++.+.+.++|++|+ 
T Consensus       126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~g---a~~-~~~~~~~~~~~~~~~~~d~vid-  195 (302)
T 1iz0_A          126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR-----PEKLALPLALG---AEE-AATYAEVPERAKAWGGLDLVLE-  195 (302)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS-----GGGSHHHHHTT---CSE-EEEGGGHHHHHHHTTSEEEEEE-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHhcC---CCE-EEECCcchhHHHHhcCceEEEE-
Confidence            4689999999999999999999999999999987     55555554432   221 2455441334444578999999 


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|..   .....++.+...   ++++.++..
T Consensus       196 ~g~~---~~~~~~~~l~~~---G~~v~~g~~  220 (302)
T 1iz0_A          196 VRGK---EVEESLGLLAHG---GRLVYIGAA  220 (302)
T ss_dssp             CSCT---THHHHHTTEEEE---EEEEEC---
T ss_pred             CCHH---HHHHHHHhhccC---CEEEEEeCC
Confidence            8873   233344444332   478877654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.12  E-value=1.1e-05  Score=57.29  Aligned_cols=68  Identities=18%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      +|+|.|+| +|.+|+++++.|.+.|++|++++|+     +++.+.+.+   .++...        ++.++++++|+||.+
T Consensus        28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~-----~~~~~~~~~---~g~~~~--------~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRN-----PKRTARLFP---SAAQVT--------FQEEAVSSPEVIFVA   90 (215)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS-----HHHHHHHSB---TTSEEE--------EHHHHTTSCSEEEEC
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHH---cCCcee--------cHHHHHhCCCEEEEC
Confidence            57899999 7999999999999999999999988     555543322   233321        344567789999988


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      .....
T Consensus        91 v~~~~   95 (215)
T 2vns_A           91 VFREH   95 (215)
T ss_dssp             SCGGG
T ss_pred             CChHH
Confidence            87643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.11  E-value=8.3e-06  Score=62.48  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |.+|+.+++.+...|.+|++++|+     +++++.+.+.....+..   +..+.+++.+.+.++|+||++
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~-----~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDIN-----VERLSYLETLFGSRVEL---LYSNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHGGGSEE---EECCHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHHHHhhCceeEe---eeCCHHHHHHHHcCCCEEEEC
Confidence            468999998 999999999999999999999998     77766555443222222   223556677778899999999


Q ss_pred             CCCcchH----HHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLA----DQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~----~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++.....    .....++.++.   ...++.++..
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~---g~~ivdv~~~  269 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRT---GSVIVDVAVD  269 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCT---TCEEEETTCT
T ss_pred             CCcCCCCCCeecCHHHHhhCCC---CCEEEEEecC
Confidence            9764310    02233444432   2467777654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.11  E-value=1.4e-05  Score=61.20  Aligned_cols=36  Identities=28%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+++|+|.|+| .|.+|..+++.|.+.|++|++.+|+
T Consensus        19 Mm~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~   54 (358)
T 4e21_A           19 YFQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLN   54 (358)
T ss_dssp             ---CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             hhcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCC
Confidence            44468999999 7999999999999999999999988

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.11  E-value=3.2e-05  Score=58.48  Aligned_cols=99  Identities=21%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             CC-CCCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhH----hhhh---cCCCeEEEEccCCChHHH
Q 040431            1 MA-SKSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQL----LDHF---KNLGVNLVIGDVLNHESL   70 (157)
Q Consensus         1 M~-~~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~----~~~~---~~~~v~~~~~D~~~~~~~   70 (157)
                      |+ +.+||.|+|+ |++|+.++..|+..|.  +|++++++     +++++-    +.+.   ...++.....|.      
T Consensus         1 m~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~-----~~k~~g~a~DL~~~~~~~~~~v~i~~~~~------   68 (326)
T 3pqe_A            1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVN-----KEKAMGDVMDLNHGKAFAPQPVKTSYGTY------   68 (326)
T ss_dssp             -CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSC-----HHHHHHHHHHHHHTGGGSSSCCEEEEECG------
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecc-----hHHHHHHHHHHHhccccccCCeEEEeCcH------
Confidence            53 3579999996 9999999999999886  89999887     554432    2221   112444443332      


Q ss_pred             HHHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           71 VKAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                       +.++++|+||..+|...             ....+.+++.+.+......++.+|
T Consensus        69 -~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt  122 (326)
T 3pqe_A           69 -EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT  122 (326)
T ss_dssp             -GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             -HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence             35789999999998754             233556667777665233455544

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.10  E-value=4.1e-06  Score=63.41  Aligned_cols=97  Identities=10%  Similarity=0.072  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~--~~d   78 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++++     +++.+.++++... .   ..|..+.+.   +.+...  ++|
T Consensus       145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~lga~-~---~~~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRN-----NKHTEELLRLGAA-Y---VIDTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESS-----STTHHHHHHHTCS-E---EEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHhCCCc-E---EEeCCcccHHHHHHHHhCCCCCc
Confidence            4689999999999999999998899999999988     6666665554321 1   234444332   333332  699


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|+++|...   ....++.+..   .++++.++...
T Consensus       216 vvid~~g~~~---~~~~~~~l~~---~G~iv~~G~~~  246 (340)
T 3gms_A          216 AAIDSIGGPD---GNELAFSLRP---NGHFLTIGLLS  246 (340)
T ss_dssp             EEEESSCHHH---HHHHHHTEEE---EEEEEECCCTT
T ss_pred             EEEECCCChh---HHHHHHHhcC---CCEEEEEeecC
Confidence            9999999753   2233333322   25888887643

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.10  E-value=9.8e-06  Score=61.53  Aligned_cols=96  Identities=17%  Similarity=0.240  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhc--CcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIK--QVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~--~~d~   79 (157)
                      .+++|+||+|.+|...++.+...|.+|++++++     +++.+.++++...    ...|..+.+   .+.++..  ++|+
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~-----~~~~~~~~~~Ga~----~~~~~~~~~~~~~v~~~~~~~g~D~  236 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRR-----DEQIALLKDIGAA----HVLNEKAPDFEATLREVMKAEQPRI  236 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESC-----GGGHHHHHHHTCS----EEEETTSTTHHHHHHHHHHHHCCCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCCC----EEEECCcHHHHHHHHHHhcCCCCcE
Confidence            589999999999999999999999999999987     6666666555321    123444433   2333332  6999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +|+++|...   ....++.+..   .++++.+++..
T Consensus       237 vid~~g~~~---~~~~~~~l~~---~G~iv~~G~~~  266 (349)
T 3pi7_A          237 FLDAVTGPL---ASAIFNAMPK---RARWIIYGRLD  266 (349)
T ss_dssp             EEESSCHHH---HHHHHHHSCT---TCEEEECCCSC
T ss_pred             EEECCCChh---HHHHHhhhcC---CCEEEEEeccC
Confidence            999999643   3344444443   35888887543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.10  E-value=1.4e-06  Score=58.06  Aligned_cols=72  Identities=18%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |.+|+.+++.|.+.|++|++.+|+     +++.+.+.+...  +...     ..+++.+++.++|+||.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~-----~~~~~~~a~~~~--~~~~-----~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRN-----IDHVRAFAEKYE--YEYV-----LINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESC-----HHHHHHHHHHHT--CEEE-----ECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHHhC--CceE-----eecCHHHHhcCCCEEEEe
Confidence            478999995 999999999999999899899988     666655433322  2221     223355667889999999


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      .+...
T Consensus        88 t~~~~   92 (144)
T 3oj0_A           88 TSSKT   92 (144)
T ss_dssp             SCCSS
T ss_pred             CCCCC
Confidence            88753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.09  E-value=5e-06  Score=63.07  Aligned_cols=96  Identities=14%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC-C-hHHHHHHhc--CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL-N-HESLVKAIK--QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~-~~~~~~~~~--~~d~   79 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++++     +++.+.++++...  .++  |.. + .+.+.++..  ++|+
T Consensus       160 g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~ga~--~v~--~~~~~~~~~v~~~~~~~g~Dv  230 (342)
T 4eye_A          160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR-----TAATEFVKSVGAD--IVL--PLEEGWAKAVREATGGAGVDM  230 (342)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS-----GGGHHHHHHHTCS--EEE--ESSTTHHHHHHHHTTTSCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHhcCCc--EEe--cCchhHHHHHHHHhCCCCceE
Confidence            4689999999999999999999999999999988     6666666555322  122  332 2 223333333  5999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|+++|...   ....++.+...   ++++.++..
T Consensus       231 vid~~g~~~---~~~~~~~l~~~---G~iv~~G~~  259 (342)
T 4eye_A          231 VVDPIGGPA---FDDAVRTLASE---GRLLVVGFA  259 (342)
T ss_dssp             EEESCC--C---HHHHHHTEEEE---EEEEEC---
T ss_pred             EEECCchhH---HHHHHHhhcCC---CEEEEEEcc
Confidence            999999753   23334433332   578887654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.07  E-value=5.9e-06  Score=61.14  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+++++|.|.|+ |.+|..++..|.+.|++|++.+|+
T Consensus         1 Mm~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~   36 (283)
T 4e12_A            1 MTGITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDIN   36 (283)
T ss_dssp             CCSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCC
Confidence            655689999985 999999999999999999999988

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.07  E-value=1.5e-06  Score=64.61  Aligned_cols=75  Identities=20%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhh-hc--CCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDH-FK--NLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~-~~--~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++++|+|+ |++|++++..|.+.|. +|++.+|+     .++++.+.+ +.  ...+.+...+.   +++.+.+.++|+
T Consensus       127 ~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~-----~~~a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~~~Di  197 (283)
T 3jyo_A          127 LDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLD-----TSRAQALADVINNAVGREAVVGVDA---RGIEDVIAAADG  197 (283)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSS-----HHHHHHHHHHHHHHHTSCCEEEECS---TTHHHHHHHSSE
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHHHHhhcCCceEEEcCH---HHHHHHHhcCCE
Confidence            578999997 8999999999999998 69999998     666654432 21  11233333443   345566778999


Q ss_pred             EEEcCCCc
Q 040431           80 VISTVGHT   87 (157)
Q Consensus        80 vv~~a~~~   87 (157)
                      |||..+..
T Consensus       198 VInaTp~G  205 (283)
T 3jyo_A          198 VVNATPMG  205 (283)
T ss_dssp             EEECSSTT
T ss_pred             EEECCCCC
Confidence            99988764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=98.07  E-value=7.4e-05  Score=54.34  Aligned_cols=104  Identities=17%  Similarity=0.172  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhhHhh----hhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQLLD----HFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~~~~----~~~-~~~v~~~~~D   63 (157)
                      .++|+|.|+ |.+|+++++.|...|. +|++++++.-.              ....|.+.+.    ... ...+..+..+
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            368999995 8999999999999996 78888887410              1113443332    221 1234555555


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +. .+.+.+++.++|+||+.....  ..-..+.+++.+.+ ++ +++.+.
T Consensus       110 ~~-~~~~~~~~~~~DvVi~~~d~~--~~~~~l~~~~~~~~-~p-~i~~~~  154 (249)
T 1jw9_B          110 LD-DAELAALIAEHDLVLDCTDNV--AVRNQLNAGCFAAK-VP-LVSGAA  154 (249)
T ss_dssp             CC-HHHHHHHHHTSSEEEECCSSH--HHHHHHHHHHHHHT-CC-EEEEEE
T ss_pred             CC-HhHHHHHHhCCCEEEEeCCCH--HHHHHHHHHHHHcC-CC-EEEeee
Confidence            54 456777888999999987653  33445666677776 43 555543

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.06  E-value=7.5e-06  Score=62.53  Aligned_cols=100  Identities=22%  Similarity=0.191  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEe-cCCCCCCCchhhHh-hhh-------cCCCeEEEEccCCChHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG-HPTFVLV-RESTISGPSKSQLL-DHF-------KNLGVNLVIGDVLNHESL   70 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~-r~~~~~~~~~~~~~-~~~-------~~~~v~~~~~D~~~~~~~   70 (157)
                      |+++++|.|.||+|++|+.+++.|.++. .+++.+. ...+.  ....... ..+       ....+.+  .|. |++. 
T Consensus         1 m~~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-d~~~-   74 (350)
T 2ep5_A            1 MADKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKI--GKKYKDAVKWIEQGDIPEEVQDLPI--VST-NYED-   74 (350)
T ss_dssp             -CCCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGT--TSBHHHHCCCCSSSSCCHHHHTCBE--ECS-SGGG-
T ss_pred             CCCCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhc--CCCHHHhcCcccccccccCCceeEE--eeC-CHHH-
Confidence            6557899999999999999999998765 4777775 22111  1111100 000       0011222  222 3333 


Q ss_pred             HHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           71 VKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                         +.++|+||.+.+..   .+..++..+.+.| . ++|-.|+.
T Consensus        75 ---~~~vDvVf~atp~~---~s~~~a~~~~~aG-~-~VId~s~~  110 (350)
T 2ep5_A           75 ---HKDVDVVLSALPNE---LAESIELELVKNG-K-IVVSNASP  110 (350)
T ss_dssp             ---GTTCSEEEECCCHH---HHHHHHHHHHHTT-C-EEEECSST
T ss_pred             ---hcCCCEEEECCChH---HHHHHHHHHHHCC-C-EEEECCcc
Confidence               36899999887765   3667888888887 3 57776664

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=98.04  E-value=1.6e-05  Score=60.90  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ..+|+|+|+ |.+|..+++.+...|.+|++++++     +++.+.+. ++.   .. ...|..+.+.+.++..++|+||+
T Consensus       188 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~-----~~~~~~~~~~lG---a~-~v~~~~~~~~~~~~~~~~D~vid  257 (366)
T 1yqd_A          188 GKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTS-----PSKKEEALKNFG---AD-SFLVSRDQEQMQAAAGTLDGIID  257 (366)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----GGGHHHHHHTSC---CS-EEEETTCHHHHHHTTTCEEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHhcC---Cc-eEEeccCHHHHHHhhCCCCEEEE
Confidence            468999996 999999999999999999999887     55555443 332   21 23466677777777678999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      ++|...  .....++.+...   ++++.+++..
T Consensus       258 ~~g~~~--~~~~~~~~l~~~---G~iv~~g~~~  285 (366)
T 1yqd_A          258 TVSAVH--PLLPLFGLLKSH---GKLILVGAPE  285 (366)
T ss_dssp             CCSSCC--CSHHHHHHEEEE---EEEEECCCCS
T ss_pred             CCCcHH--HHHHHHHHHhcC---CEEEEEccCC
Confidence            998642  123344444333   4788887643

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.03  E-value=1.6e-05  Score=60.74  Aligned_cols=98  Identities=14%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhh-hh-------cCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLD-HF-------KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~-~~-------~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      ++|.|.||||++|+.+++.|.+++ .+|+.+.+++... ........ .+       ....+.+...   |+++   +++
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~   81 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSA-GKKYKDACYWFQDRDIPENIKDMVVIPT---DPKH---EEF   81 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTT-TSBHHHHSCCCCSSCCCHHHHTCBCEES---CTTS---GGG
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccc-cccHHHhcccccccccccCceeeEEEeC---CHHH---Hhc
Confidence            689999999999999999998875 5788787543221 11121110 00       0011112111   2222   335


Q ss_pred             -CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           76 -QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        76 -~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                       ++|+||.+.+..   ....++..+.+.|  .++|-.|+.
T Consensus        82 ~~~DvV~~atp~~---~~~~~a~~~~~aG--~~VId~s~~  116 (354)
T 1ys4_A           82 EDVDIVFSALPSD---LAKKFEPEFAKEG--KLIFSNASA  116 (354)
T ss_dssp             TTCCEEEECCCHH---HHHHHHHHHHHTT--CEEEECCST
T ss_pred             CCCCEEEECCCch---HHHHHHHHHHHCC--CEEEECCch
Confidence             899999998775   3566777777877  347666664

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.02  E-value=1.8e-05  Score=61.01  Aligned_cols=99  Identities=19%  Similarity=0.099  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |.+|+.+++.+...|.+|++++|+     +++.+.+.+.....+.   .+..+.+++.+.++++|+||++
T Consensus       168 g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~-----~~~l~~~~~~~g~~~~---~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          168 PADVVVIGA-GTAGYNAARIANGMGATVTVLDIN-----IDKLRQLDAEFCGRIH---TRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTTTSSE---EEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHHHHhcCCeeE---eccCCHHHHHHHHcCCCEEEEC
Confidence            578999997 999999999999999999999988     6665555442222221   2344566788888899999998


Q ss_pred             CCCcch----HHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLL----ADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~----~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++....    -.....++.++.   ...++.+|..
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~---g~~iV~va~~  270 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKP---GAVLVDIAID  270 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCT---TCEEEEGGGG
T ss_pred             CCcCCCCCcceecHHHHhcCCC---CcEEEEEecC
Confidence            875431    002334444432   2578888853

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.01  E-value=4e-05  Score=58.09  Aligned_cols=43  Identities=12%  Similarity=0.110  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      |+++|+|.|.|+ |.+|..++..|.+.|++|++++|+     +++.+.+
T Consensus         1 mm~~mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~-----~~~~~~~   43 (359)
T 1bg6_A            1 MIESKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDID-----AQRIKEI   43 (359)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHH
T ss_pred             CCCcCeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHH
Confidence            554689999995 999999999999999999999887     5555444

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=98.01  E-value=1.6e-05  Score=59.05  Aligned_cols=93  Identities=11%  Similarity=0.073  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhC-CCcEEEE-ecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKA-GHPTFVL-VRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      |+++++|.|.|++|.+|+.+++.+.+. +.+++.. +|+.+......+..+.....       .++.-.+++.+++.++|
T Consensus        18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~-------~gv~v~~dl~~ll~~aD   90 (288)
T 3ijp_A           18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDF-------LGVRITDDPESAFSNTE   90 (288)
T ss_dssp             ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSC-------CSCBCBSCHHHHTTSCS
T ss_pred             ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCc-------CCceeeCCHHHHhcCCC
Confidence            444579999999999999999999875 5676655 45432211111111111111       11111223445566788


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ++|.+..+.   .....+..|.+.|
T Consensus        91 VvIDFT~p~---a~~~~~~~~l~~G  112 (288)
T 3ijp_A           91 GILDFSQPQ---ASVLYANYAAQKS  112 (288)
T ss_dssp             EEEECSCHH---HHHHHHHHHHHHT
T ss_pred             EEEEcCCHH---HHHHHHHHHHHcC
Confidence            888776543   3455566666665

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=98.00  E-value=7.4e-05  Score=59.05  Aligned_cols=99  Identities=21%  Similarity=0.259  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~   82 (157)
                      .++++|.|| |.+|..+++.| +..++|.++.++     +++++.+.+.. ++..++.+|.+|++-+.+. +..+|++|-
T Consensus       235 ~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d-----~~r~~~la~~l-~~~~Vi~GD~td~~~L~ee~i~~~D~~ia  306 (461)
T 4g65_A          235 YRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERN-----LQRAEKLSEEL-ENTIVFCGDAADQELLTEENIDQVDVFIA  306 (461)
T ss_dssp             CCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESC-----HHHHHHHHHHC-TTSEEEESCTTCHHHHHHTTGGGCSEEEE
T ss_pred             ccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecC-----HHHHHHHHHHC-CCceEEeccccchhhHhhcCchhhcEEEE
Confidence            357999995 99999999997 557999999988     88888776654 3678999999999988876 678999997


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ..+...  ......-.+++.| +++.+-.-.
T Consensus       307 ~T~~De--~Ni~~~llAk~~g-v~kvIa~vn  334 (461)
T 4g65_A          307 LTNEDE--TNIMSAMLAKRMG-AKKVMVLIQ  334 (461)
T ss_dssp             CCSCHH--HHHHHHHHHHHTT-CSEEEEECS
T ss_pred             cccCcH--HHHHHHHHHHHcC-Ccccccccc
Confidence            777642  2233344456667 777666543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.00  E-value=8.9e-06  Score=61.07  Aligned_cols=96  Identities=16%  Similarity=0.120  Sum_probs=59.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHh-hhhc------CCCeEEEE-ccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLL-DHFK------NLGVNLVI-GDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~-~~~~------~~~v~~~~-~D~~~~~~~~~~~   74 (157)
                      +|||.|+|| |.+|..++..|+..|+ +|++++++     +++++.. .++.      .....+.. .|   .    +.+
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~-----~~~~~g~~~dl~~~~~~~~~~~~i~~t~d---~----~a~   68 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIV-----EGVPQGKALDLYEASPIEGFDVRVTGTNN---Y----ADT   68 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSS-----SSHHHHHHHHHHTTHHHHTCCCCEEEESC---G----GGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCC-----ccHHHHHHHhHHHhHhhcCCCeEEEECCC---H----HHH
Confidence            579999998 9999999999999996 88888877     4443321 1111      11222222 22   2    347


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEecc
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +++|+||..+|...             ....+.+++.+.+.. ...++.+.|
T Consensus        69 ~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t  119 (309)
T 1ur5_A           69 ANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVN  119 (309)
T ss_dssp             TTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECC
T ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcC
Confidence            89999999998764             122445666666664 444444433

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.99  E-value=1.9e-05  Score=59.76  Aligned_cols=96  Identities=14%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~~~d~v   80 (157)
                      ..+|+|+|| |.+|..+++.+...|.+|++++++     +++.+.++++.   ... ..|..+.+   .+.++..++|++
T Consensus       165 g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~lG---a~~-~~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          165 GEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIG-----DEKLELAKELG---ADL-VVNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHTT---CSE-EECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHCC---CCE-EecCCCccHHHHHHHHhCCCCEE
Confidence            468999999 779999999999999999999888     66666655442   221 24665432   233333579999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |+++|...  .....++.+...   ++++.++..
T Consensus       235 id~~g~~~--~~~~~~~~l~~~---G~~v~~g~~  263 (339)
T 1rjw_A          235 VVTAVSKP--AFQSAYNSIRRG---GACVLVGLP  263 (339)
T ss_dssp             EESSCCHH--HHHHHHHHEEEE---EEEEECCCC
T ss_pred             EECCCCHH--HHHHHHHHhhcC---CEEEEeccc
Confidence            99998632  233344444333   478887654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.99  E-value=7.4e-06  Score=64.57  Aligned_cols=78  Identities=18%  Similarity=0.338  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC----CCeE-EE-----EccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN----LGVN-LV-----IGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~v~-~~-----~~D~~~~~~~~~~   73 (157)
                      +|+|.|+| +|++|..++..|.+.|++|++++++     +++.+.+.....    +++. .+     ...+.-..++.++
T Consensus         2 ~mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~-----~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            2 SLDIAVVG-IGYVGLVSATCFAELGANVRCIDTD-----RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECC-----HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHH
Confidence            47999999 5999999999999999999999998     666655543111    0000 00     0111111234455


Q ss_pred             hcCcCEEEEcCCCc
Q 040431           74 IKQVDVVISTVGHT   87 (157)
Q Consensus        74 ~~~~d~vv~~a~~~   87 (157)
                      ++++|+||-+.+..
T Consensus        76 ~~~aDvViiaVptp   89 (450)
T 3gg2_A           76 VPEADIIFIAVGTP   89 (450)
T ss_dssp             GGGCSEEEECCCCC
T ss_pred             HhcCCEEEEEcCCC
Confidence            67788888877654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.98  E-value=0.0001  Score=56.18  Aligned_cols=98  Identities=18%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~   76 (157)
                      ..+|+|+|+ |.+|...++.+...|.+ |++++++     +++.+.++++ ...+..+..|-.+.+++.+.+.      +
T Consensus       180 g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~-----~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g  252 (363)
T 3m6i_A          180 GDPVLICGA-GPIGLITMLCAKAAGACPLVITDID-----EGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIE  252 (363)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESC-----HHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCC
Confidence            468999998 99999999999989987 8888887     7777777776 4444444555444444444332      6


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +|++|+++|...  .....++.+...   ++++.++.
T Consensus       253 ~Dvvid~~g~~~--~~~~~~~~l~~~---G~iv~~G~  284 (363)
T 3m6i_A          253 PAVALECTGVES--SIAAAIWAVKFG---GKVFVIGV  284 (363)
T ss_dssp             CSEEEECSCCHH--HHHHHHHHSCTT---CEEEECCC
T ss_pred             CCEEEECCCChH--HHHHHHHHhcCC---CEEEEEcc
Confidence            999999998642  123344444333   57888764

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.97  E-value=2.7e-06  Score=62.89  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             CC-CCCeEEEEcCCCcchHHHHHHHHhC-CCcEE-EEecC
Q 040431            1 MA-SKSKILFIGGTGYIGKFTVEASVKA-GHPTF-VLVRE   37 (157)
Q Consensus         1 M~-~~~~ilitGatG~iG~~l~~~l~~~-g~~v~-~~~r~   37 (157)
                      |. .+|+|+|+|++|.+|+.+++.+.+. +++++ +++++
T Consensus         1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~   40 (273)
T 1dih_A            1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE   40 (273)
T ss_dssp             -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred             CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            54 2479999999999999999998754 67877 44444

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.95  E-value=2.7e-05  Score=59.69  Aligned_cols=101  Identities=11%  Similarity=0.087  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhh------c--CCCeEEEEccCCChHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHF------K--NLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~------~--~~~v~~~~~D~~~~~~~~   71 (157)
                      |+++++|.|.||||++|+.|.+.|.++. .++..+...++.  ..+......+      .  ..++.+...   ++++  
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~sa--Gk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~~--   76 (359)
T 4dpk_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSV--GKPYGEVVRWQTVGQVPKEIADMEIKPT---DPKL--   76 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTT--TSBHHHHCCCCSSSCCCHHHHTCBCEEC---CGGG--
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhc--CCChhHhcccccccccccccccceEEeC---CHHH--
Confidence            3335689999999999999999887765 367666543222  1122111000      0  011222222   2332  


Q ss_pred             HHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           72 KAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                        +.++|+||.+.+...   +..+...+.+.|  .++|-+|+..
T Consensus        77 --~~~vDvvf~a~p~~~---s~~~a~~~~~~G--~~vIDlSa~~  113 (359)
T 4dpk_A           77 --MDDVDIIFSPLPQGA---AGPVEEQFAKEG--FPVISNSPDH  113 (359)
T ss_dssp             --CTTCCEEEECCCTTT---HHHHHHHHHHTT--CEEEECSSTT
T ss_pred             --hcCCCEEEECCChHH---HHHHHHHHHHCC--CEEEEcCCCc
Confidence              368999999988874   567777777877  4677777753

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.95  E-value=2.7e-05  Score=59.69  Aligned_cols=101  Identities=11%  Similarity=0.087  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhh------c--CCCeEEEEccCCChHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHF------K--NLGVNLVIGDVLNHESLV   71 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~------~--~~~v~~~~~D~~~~~~~~   71 (157)
                      |+++++|.|.||||++|+.|.+.|.++. .++..+...++.  ..+......+      .  ..++.+...   ++++  
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~sa--Gk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~~--   76 (359)
T 4dpl_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSV--GKPYGEVVRWQTVGQVPKEIADMEIKPT---DPKL--   76 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTT--TSBHHHHCCCCSSSCCCHHHHTCBCEEC---CGGG--
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhc--CCChhHhcccccccccccccccceEEeC---CHHH--
Confidence            3335689999999999999999887765 367666543222  1122111000      0  011222222   2332  


Q ss_pred             HHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           72 KAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                        +.++|+||.+.+...   +..+...+.+.|  .++|-+|+..
T Consensus        77 --~~~vDvvf~a~p~~~---s~~~a~~~~~~G--~~vIDlSa~~  113 (359)
T 4dpl_A           77 --MDDVDIIFSPLPQGA---AGPVEEQFAKEG--FPVISNSPDH  113 (359)
T ss_dssp             --CTTCCEEEECCCTTT---HHHHHHHHHHTT--CEEEECSSTT
T ss_pred             --hcCCCEEEECCChHH---HHHHHHHHHHCC--CEEEEcCCCc
Confidence              368999999988874   567777777877  4677777753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.95  E-value=0.00015  Score=54.77  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhh----Hhhhh---cCCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQ----LLDHF---KNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~----~~~~~---~~~~v~~~~~D~~~~~~~~~   72 (157)
                      |+ ++||.|+|+ |.+|.+++..|+..|. +|++++++     +++++    .+.+.   ...+..+...  .|.    +
T Consensus         3 m~-~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~-----~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~----~   69 (321)
T 3p7m_A            3 MA-RKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIA-----QGMPNGKALDLLQTCPIEGVDFKVRGT--NDY----K   69 (321)
T ss_dssp             CC-CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSS-----SSHHHHHHHHHHTTHHHHTCCCCEEEE--SCG----G
T ss_pred             CC-CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCC-----hHHHHHHHHHHHhhhhhcCCCcEEEEc--CCH----H
Confidence            54 679999995 9999999999999887 89999988     44433    12211   1122333321  122    3


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      .++++|+||..+|...             ....+.+++.+.+......++.+|
T Consensus        70 a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  122 (321)
T 3p7m_A           70 DLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT  122 (321)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             HHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            5789999999998764             233556666666665223444443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.95  E-value=3e-05  Score=57.59  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEE--------EccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV--------IGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~--------~~D~~~~~~~~~~~~   75 (157)
                      ||+|.|+|+ |.+|..++..|.+.|++|++++|+     +++.+.+.+.   ++...        ..+..+.+++.+.++
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~-----~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQW-----PAHIEAIRKN---GLIADFNGEEVVANLPIFSPEEIDHQNE   73 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHH---CEEEEETTEEEEECCCEECGGGCCTTSC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECC-----HHHHHHHHhC---CEEEEeCCCeeEecceeecchhhcccCC
Confidence            679999995 999999999999999999999988     5555544332   12211        112223333333344


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHH
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIK  100 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~  100 (157)
                      ++|+||-+.....   ...+++.+.
T Consensus        74 ~~d~vi~~v~~~~---~~~v~~~l~   95 (316)
T 2ew2_A           74 QVDLIIALTKAQQ---LDAMFKAIQ   95 (316)
T ss_dssp             CCSEEEECSCHHH---HHHHHHHHG
T ss_pred             CCCEEEEEecccc---HHHHHHHHH
Confidence            7888887776532   344444443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.95  E-value=1e-05  Score=61.20  Aligned_cols=96  Identities=23%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhh----Hhhhh---cCCCeEEE-EccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQ----LLDHF---KNLGVNLV-IGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~----~~~~~---~~~~v~~~-~~D~~~~~~~~~~~   74 (157)
                      ++||.|+|| |.+|.+++..|+..|+ +|++++++     +++++    .+.+.   ...+..+. ..|   .    +.+
T Consensus         7 ~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~-----~~~~~g~~~dl~~~~~~~~~~~~v~~t~d---~----~a~   73 (324)
T 3gvi_A            7 RNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIA-----EGTPQGKGLDIAESSPVDGFDAKFTGAND---Y----AAI   73 (324)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSS-----SSHHHHHHHHHHHHHHHHTCCCCEEEESS---G----GGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCC-----chhHHHHHHHHhchhhhcCCCCEEEEeCC---H----HHH
Confidence            679999997 9999999999999998 99999988     44432    12211   11123332 222   2    357


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +++|+||..+|...             ....+.+++.+.+......++.+|
T Consensus        74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt  124 (324)
T 3gvi_A           74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT  124 (324)
T ss_dssp             TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence            89999999998754             233455666666665223444444

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.94  E-value=1.5e-06  Score=64.62  Aligned_cols=74  Identities=14%  Similarity=0.073  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCC----CeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL----GVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~----~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++++|+|+ |.+|+++++.|++.| +|++.+|+     .++++.+.+....    .. .+.+|+.+.   .+.+.++|+
T Consensus       128 ~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~-----~~~~~~l~~~~~~~~~~~~-~~~~d~~~~---~~~~~~~Di  196 (287)
T 1nvt_A          128 DKNIVIYGA-GGAARAVAFELAKDN-NIIIANRT-----VEKAEALAKEIAEKLNKKF-GEEVKFSGL---DVDLDGVDI  196 (287)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSS-----HHHHHHHHHHHHHHHTCCH-HHHEEEECT---TCCCTTCCE
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECC-----HHHHHHHHHHHhhhccccc-ceeEEEeeH---HHhhCCCCE
Confidence            578999997 599999999999999 99999887     5555443221110    00 012233331   334567999


Q ss_pred             EEEcCCCcc
Q 040431           80 VISTVGHTL   88 (157)
Q Consensus        80 vv~~a~~~~   88 (157)
                      |||+++...
T Consensus       197 lVn~ag~~~  205 (287)
T 1nvt_A          197 IINATPIGM  205 (287)
T ss_dssp             EEECSCTTC
T ss_pred             EEECCCCCC
Confidence            999999764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.94  E-value=9.5e-05  Score=55.68  Aligned_cols=99  Identities=14%  Similarity=0.112  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      ++||.|+|+ |++|..++..|+..+.  +|++++.+....+ .....+.+..  ..++.+..   .+    .+.++++|+
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~-g~~~dl~~~~~~~~~~~i~~---~~----~~a~~~aDv   77 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAI-GEAMDINHGLPFMGQMSLYA---GD----YSDVKDCDV   77 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CC-HHHHHHTTSCCCTTCEEEC-----C----GGGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHH-HHHHHHHHhHHhcCCeEEEE---CC----HHHhCCCCE
Confidence            479999997 9999999999999886  8999998843321 1111222111  11232222   22    234789999


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ||..++...             ....+.+++.+.+......++.+
T Consensus        78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (318)
T 1y6j_A           78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV  122 (318)
T ss_dssp             EEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred             EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence            999998765             12246677777766523444443

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.93  E-value=3.7e-05  Score=60.24  Aligned_cols=100  Identities=11%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEE--ccCCC---------------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI--GDVLN---------------   66 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~--~D~~~---------------   66 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++++     +++.+.++++... ..+-.  .|+.+               
T Consensus       221 g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~-----~~~~~~~~~lGa~-~~i~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T 4a0s_A          221 GDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSS-----AQKEAAVRALGCD-LVINRAELGITDDIADDPRRVVETGRK  294 (447)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCC-CEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHhcCCC-EEEecccccccccccccccccchhhhH
Confidence            4689999999999999999999999999999877     7777666555322 11111  12211               


Q ss_pred             -hHHHHHHhc-CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           67 -HESLVKAIK-QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        67 -~~~~~~~~~-~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                       .+.+.+... ++|++|+++|..   .....++.+..   .++++.+++..
T Consensus       295 ~~~~v~~~~g~g~Dvvid~~G~~---~~~~~~~~l~~---~G~iv~~G~~~  339 (447)
T 4a0s_A          295 LAKLVVEKAGREPDIVFEHTGRV---TFGLSVIVARR---GGTVVTCGSSS  339 (447)
T ss_dssp             HHHHHHHHHSSCCSEEEECSCHH---HHHHHHHHSCT---TCEEEESCCTT
T ss_pred             HHHHHHHHhCCCceEEEECCCch---HHHHHHHHHhc---CCEEEEEecCC
Confidence             233333332 599999999973   23334443333   35888887654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.93  E-value=5.9e-05  Score=56.72  Aligned_cols=81  Identities=11%  Similarity=0.199  Sum_probs=55.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhh-hc-CCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDH-FK-NLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~-~~-~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++++|+|+ |++|++++..|.+.|. +|++.+|+...  .++++.+.+ +. ..+..+...+..+.+.+.+.+.++|+|
T Consensus       148 gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~--~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          148 GKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDF--FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTH--HHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCch--HHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            578999996 8999999999999997 79999998321  223333321 21 112334445555654456667789999


Q ss_pred             EEcCCCc
Q 040431           81 ISTVGHT   87 (157)
Q Consensus        81 v~~a~~~   87 (157)
                      ||..+..
T Consensus       225 INaTp~G  231 (312)
T 3t4e_A          225 TNGTKVG  231 (312)
T ss_dssp             EECSSTT
T ss_pred             EECCcCC
Confidence            9988775

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.92  E-value=2.6e-05  Score=59.16  Aligned_cols=97  Identities=11%  Similarity=0.118  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhc--Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIK--QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~--~~   77 (157)
                      ..+++|+||+|.+|..+++.+... |++|++++++     +++.+.++++.. .   ...|..+.+.   +.++..  ++
T Consensus       171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~-----~~~~~~~~~~g~-~---~~~~~~~~~~~~~~~~~~~~~~~  241 (347)
T 1jvb_A          171 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR-----EEAVEAAKRAGA-D---YVINASMQDPLAEIRRITESKGV  241 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS-----HHHHHHHHHHTC-S---EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHhCC-C---EEecCCCccHHHHHHHHhcCCCc
Confidence            468999999989999999999998 9999999887     666665554421 1   1235544333   444443  69


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |++|+++|...  .....++.+..   .++++.++..
T Consensus       242 d~vi~~~g~~~--~~~~~~~~l~~---~G~iv~~g~~  273 (347)
T 1jvb_A          242 DAVIDLNNSEK--TLSVYPKALAK---QGKYVMVGLF  273 (347)
T ss_dssp             EEEEESCCCHH--HHTTGGGGEEE---EEEEEECCSS
T ss_pred             eEEEECCCCHH--HHHHHHHHHhc---CCEEEEECCC
Confidence            99999999641  12222333322   2478777653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.92  E-value=2.6e-05  Score=59.16  Aligned_cols=97  Identities=16%  Similarity=0.248  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhc--Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIK--QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~--~~   77 (157)
                      ..+|+|+|| |.+|..+++.+...|+ +|++++++     +++.+.++++..   .. ..|..+.+   .+.++..  ++
T Consensus       168 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~-----~~~~~~~~~~Ga---~~-~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          168 GKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPS-----DFRRELAKKVGA---DY-VINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSC-----HHHHHHHHHHTC---SE-EECTTTSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCC---CE-EECCCCcCHHHHHHHHcCCCCC
Confidence            458999999 9999999999999998 99999888     666666555432   11 23554433   2333332  68


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |++|+++|...  .....++.+...   ++++.+++..
T Consensus       238 D~vid~~g~~~--~~~~~~~~l~~~---G~iv~~g~~~  270 (348)
T 2d8a_A          238 DVFLEFSGAPK--ALEQGLQAVTPA---GRVSLLGLYP  270 (348)
T ss_dssp             EEEEECSCCHH--HHHHHHHHEEEE---EEEEECCCCS
T ss_pred             CEEEECCCCHH--HHHHHHHHHhcC---CEEEEEccCC
Confidence            99999998632  233344444332   5888887643

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.92  E-value=8.5e-05  Score=54.87  Aligned_cols=82  Identities=24%  Similarity=0.303  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      |+ +|+|.|+|+ |.+|.++++.|.+.|+   +|++.+|+     +++.+.+.+..  ++..       ..+..++++++
T Consensus         1 M~-~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~-----~~~~~~l~~~~--gi~~-------~~~~~~~~~~a   64 (280)
T 3tri_A            1 MN-TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRS-----LDKLDFFKEKC--GVHT-------TQDNRQGALNA   64 (280)
T ss_dssp             -C-CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSS-----SHHHHHHHHTT--CCEE-------ESCHHHHHSSC
T ss_pred             CC-CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCC-----HHHHHHHHHHc--CCEE-------eCChHHHHhcC
Confidence            54 688999995 9999999999999998   89999988     66666554321  2222       11233456778


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHH
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~  101 (157)
                      |+||-+..+..   ...+++.+..
T Consensus        65 DvVilav~p~~---~~~vl~~l~~   85 (280)
T 3tri_A           65 DVVVLAVKPHQ---IKMVCEELKD   85 (280)
T ss_dssp             SEEEECSCGGG---HHHHHHHHHH
T ss_pred             CeEEEEeCHHH---HHHHHHHHHh
Confidence            88888775432   3444444443

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.91  E-value=6.4e-05  Score=57.67  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +++|.|.||||++|+.|++.|.++++   ++..+...++.  ..+..    +...++.+...|   ++    .+.++|+|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~sa--G~~~~----~~~~~~~~~~~~---~~----~~~~~Dvv   68 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA--GKSLK----FKDQDITIEETT---ET----AFEGVDIA   68 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTT--TCEEE----ETTEEEEEEECC---TT----TTTTCSEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccC--CCcce----ecCCCceEeeCC---HH----HhcCCCEE
Confidence            67999999999999999999888765   34444432211  11111    111122222222   22    24689999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |.+++..   .+..+...+.+.| . ++|-+|+.
T Consensus        69 f~a~~~~---~s~~~a~~~~~~G-~-~vIDlSa~   97 (366)
T 3pwk_A           69 LFSAGSS---TSAKYAPYAVKAG-V-VVVDNTSY   97 (366)
T ss_dssp             EECSCHH---HHHHHHHHHHHTT-C-EEEECSST
T ss_pred             EECCChH---hHHHHHHHHHHCC-C-EEEEcCCc
Confidence            9998765   3667777788887 3 67777774

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.91  E-value=6.7e-05  Score=56.73  Aligned_cols=96  Identities=18%  Similarity=0.154  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhH----hhhhc--CCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQL----LDHFK--NLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~----~~~~~--~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      ++||.|+|+ |.+|++++..|+..|.  ++++++++     +++++-    +.+..  ..++.+...|   .    +.++
T Consensus         9 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~-----~~k~~g~a~DL~~~~~~~~~~~i~~~~---~----~a~~   75 (326)
T 3vku_A            9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIF-----KDKTKGDAIDLEDALPFTSPKKIYSAE---Y----SDAK   75 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSC-----HHHHHHHHHHHHTTGGGSCCCEEEECC---G----GGGT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCC-----hHHHHHHHhhHhhhhhhcCCcEEEECc---H----HHhc
Confidence            579999996 9999999999999886  89999886     544431    11111  1234444332   2    3478


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ++|+||..||...             ....+.+.+.+.+......++.+|
T Consensus        76 ~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt  125 (326)
T 3vku_A           76 DADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             TCSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred             CCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            9999999999764             222556666666665223444443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.90  E-value=1.2e-05  Score=60.77  Aligned_cols=75  Identities=24%  Similarity=0.278  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhH----hhhh---cCCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQL----LDHF---KNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~----~~~~---~~~~v~~~~~D~~~~~~~~~   72 (157)
                      |+.++||.|+|| |.+|..++..|+..|+ +|++++++     +++++.    +.+.   ......+...  .|   . +
T Consensus         1 m~~~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~-----~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~   68 (322)
T 1t2d_A            1 MAPKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIV-----KNMPHGKALDTSHTNVMAYSNCKVSGS--NT---Y-D   68 (322)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSS-----SSHHHHHHHHHHTHHHHHTCCCCEEEE--CC---G-G
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCC-----HHHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-H
Confidence            665789999997 9999999999999997 88888887     444431    1111   1112222221  12   2 3


Q ss_pred             HhcCcCEEEEcCCCc
Q 040431           73 AIKQVDVVISTVGHT   87 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~   87 (157)
                      .++++|+||..++..
T Consensus        69 al~~aD~Vi~a~g~p   83 (322)
T 1t2d_A           69 DLAGADVVIVTAGFT   83 (322)
T ss_dssp             GGTTCSEEEECCSCS
T ss_pred             HhCCCCEEEEeCCCC
Confidence            478999999999654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.90  E-value=1e-05  Score=60.97  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhH----hhhh--cCCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQL----LDHF--KNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~----~~~~--~~~~v~~~~~D~~~~~~~~~   72 (157)
                      |.+.+||.|+|| |.+|++++..|+..+.  ++++++++     +++++-    +.+.  ...++.+.. |  +    .+
T Consensus         2 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~-----~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~   68 (318)
T 1ez4_A            2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVV-----KDRTKGDALDLEDAQAFTAPKKIYS-G--E----YS   68 (318)
T ss_dssp             BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSS-----HHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GG
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCC-----chHHHHHHHHHHHHHHhcCCeEEEE-C--C----HH
Confidence            444579999998 9999999999998875  79999886     444432    1111  112344433 2  2    23


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      .++++|+||..++...             ....+.+++.+.+......++.+|
T Consensus        69 a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  121 (318)
T 1ez4_A           69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (318)
T ss_dssp             GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            4789999999998865             233555666666665234555543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.90  E-value=4.9e-05  Score=56.80  Aligned_cols=40  Identities=25%  Similarity=0.434  Sum_probs=34.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +++|.|+| .|.+|..+++.|.+.|++|++.+|+     +++.+.+
T Consensus         9 ~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~-----~~~~~~~   48 (306)
T 3l6d_A            9 EFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRS-----PGKAAAL   48 (306)
T ss_dssp             SCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS-----HHHHHHH
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHH
Confidence            46899998 6999999999999999999999988     5555444

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.90  E-value=1.1e-05  Score=59.36  Aligned_cols=72  Identities=19%  Similarity=0.209  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCC--CeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL--GVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~--~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++|+|+ |.+|++++..|++.|++|++.+|+     .++++.+.+....  .+..  .|+   +++.+  .++|+||
T Consensus       119 ~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~-----~~~a~~l~~~~~~~~~~~~--~~~---~~~~~--~~~DivI  185 (272)
T 1p77_A          119 NQHVLILGA-GGATKGVLLPLLQAQQNIVLANRT-----FSKTKELAERFQPYGNIQA--VSM---DSIPL--QTYDLVI  185 (272)
T ss_dssp             TCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESS-----HHHHHHHHHHHGGGSCEEE--EEG---GGCCC--SCCSEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHccccCCeEE--eeH---HHhcc--CCCCEEE
Confidence            578999997 889999999999999999999998     6666555422111  2222  232   21110  3799999


Q ss_pred             EcCCCcc
Q 040431           82 STVGHTL   88 (157)
Q Consensus        82 ~~a~~~~   88 (157)
                      ++++...
T Consensus       186 n~t~~~~  192 (272)
T 1p77_A          186 NATSAGL  192 (272)
T ss_dssp             ECCCC--
T ss_pred             ECCCCCC
Confidence            9999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.89  E-value=1.6e-05  Score=58.97  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+.+|+|.|.| .|.+|..+++.|.+.|++|++.+|+
T Consensus         1 M~~~~~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~   36 (301)
T 3cky_A            1 MEKSIKIGFIG-LGAMGKPMAINLLKEGVTVYAFDLM   36 (301)
T ss_dssp             ---CCEEEEEC-CCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            66678999999 6999999999999999999998887

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.89  E-value=4.6e-05  Score=57.87  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |++|.|.||||++|+.+++.|.+++   .+++.+....+..  ....    +....+.+...|   ++    .+.++|+|
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G--~~~~----~~~~~i~~~~~~---~~----~~~~vDvV   69 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEG--KTYR----FNGKTVRVQNVE---EF----DWSQVHIA   69 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTT--CEEE----ETTEEEEEEEGG---GC----CGGGCSEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCC--Ccee----ecCceeEEecCC---hH----HhcCCCEE
Confidence            6899999999999999999999874   4677665322111  1110    112223332222   22    24689999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |.+.+..   .+....+.+.+.| . ++|-.|+.
T Consensus        70 f~a~g~~---~s~~~a~~~~~~G-~-~vId~s~~   98 (336)
T 2r00_A           70 LFSAGGE---LSAKWAPIAAEAG-V-VVIDNTSH   98 (336)
T ss_dssp             EECSCHH---HHHHHHHHHHHTT-C-EEEECSST
T ss_pred             EECCCch---HHHHHHHHHHHcC-C-EEEEcCCc
Confidence            9998876   3667888888887 4 67777775

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.89  E-value=8.8e-05  Score=56.32  Aligned_cols=101  Identities=16%  Similarity=0.072  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCC-CCCchhhH-hhhhcCC-CeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTI-SGPSKSQL-LDHFKNL-GVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~-~~~~~~~~-~~~~~~~-~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |++|.|.||||++|+.+++.|.++. .++..+..+++. ....+... ...+... ++.+...  .+.+   +++.++|+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~~~---~~~~~~Dv   78 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SDIS---EFSPGVDV   78 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SSGG---GTCTTCSE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--CCHH---HHhcCCCE
Confidence            5799999999999999999998864 578777655311 10122221 1112221 2333322  0222   22368999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ||.+.+..   .+..+.+.+.+.|  .++|-+|+.
T Consensus        79 vf~a~p~~---~s~~~~~~~~~~g--~~vIDlSa~  108 (337)
T 3dr3_A           79 VFLATAHE---VSHDLAPQFLEAG--CVVFDLSGA  108 (337)
T ss_dssp             EEECSCHH---HHHHHHHHHHHTT--CEEEECSST
T ss_pred             EEECCChH---HHHHHHHHHHHCC--CEEEEcCCc
Confidence            99887765   3667788888877  467777774

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=97.89  E-value=4.6e-05  Score=51.52  Aligned_cols=74  Identities=12%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CcchHHHHHHHHhCCCcEEEEecCCCCCCC--chhhHhhhhcCCCeEEEEccCCCh--HHHHHHhc------CcCEEEEc
Q 040431           14 GYIGKFTVEASVKAGHPTFVLVRESTISGP--SKSQLLDHFKNLGVNLVIGDVLNH--ESLVKAIK------QVDVVIST   83 (157)
Q Consensus        14 G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~v~~~~~D~~~~--~~~~~~~~------~~d~vv~~   83 (157)
                      |.++.+.++.|.+.|.+|++..|+......  +..+.++. .......+.+|++++  +++.++++      +-|++|||
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~-~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVnn  104 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQ-AGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHC  104 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHH-TTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEEC
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHH-cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence            678999999999999999988776432211  11222222 233466678899998  88877764      23999999


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      ||...
T Consensus       105 Agg~r  109 (157)
T 3gxh_A          105 LANYR  109 (157)
T ss_dssp             SBSHH
T ss_pred             CCCCC
Confidence            99853

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.88  E-value=6.9e-05  Score=56.33  Aligned_cols=40  Identities=33%  Similarity=0.443  Sum_probs=34.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +|+|.|+| .|.+|..+++.|.+.|++|++.+|+     +++.+.+
T Consensus        31 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~-----~~~~~~l   70 (320)
T 4dll_A           31 ARKITFLG-TGSMGLPMARRLCEAGYALQVWNRT-----PARAASL   70 (320)
T ss_dssp             CSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSC-----HHHHHHH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCC-----HHHHHHH
Confidence            46899998 5999999999999999999999988     6555544

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.88  E-value=1.8e-05  Score=58.61  Aligned_cols=69  Identities=20%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |.+|++++..|.+.|. +|++.+|+     .++.+.+..    .+..     ...+++.+.+.++|+||+
T Consensus       117 ~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~-----~~~a~~la~----~~~~-----~~~~~~~~~~~~aDiVIn  181 (277)
T 3don_A          117 DAYILILGA-GGASKGIANELYKIVRPTLTVANRT-----MSRFNNWSL----NINK-----INLSHAESHLDEFDIIIN  181 (277)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSC-----GGGGTTCCS----CCEE-----ECHHHHHHTGGGCSEEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCC-----HHHHHHHHH----hccc-----ccHhhHHHHhcCCCEEEE
Confidence            468999996 8999999999999998 89999998     444433321    1221     134556677788999999


Q ss_pred             cCCCc
Q 040431           83 TVGHT   87 (157)
Q Consensus        83 ~a~~~   87 (157)
                      ..+..
T Consensus       182 aTp~G  186 (277)
T 3don_A          182 TTPAG  186 (277)
T ss_dssp             CCC--
T ss_pred             CccCC
Confidence            87664

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.87  E-value=3.5e-05  Score=58.42  Aligned_cols=95  Identities=15%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhc--CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIK--QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~--~~d~v   80 (157)
                      ..+|+|+||+|.+|...++.+...|.+|+++ ++     +++.+.++++.   ...+. +-.+ .+.+.+...  ++|++
T Consensus       151 g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~-----~~~~~~~~~lG---a~~i~-~~~~~~~~~~~~~~~~g~D~v  220 (343)
T 3gaz_A          151 GQTVLIQGGGGGVGHVAIQIALARGARVFAT-AR-----GSDLEYVRDLG---ATPID-ASREPEDYAAEHTAGQGFDLV  220 (343)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-EC-----HHHHHHHHHHT---SEEEE-TTSCHHHHHHHHHTTSCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eC-----HHHHHHHHHcC---CCEec-cCCCHHHHHHHHhcCCCceEE
Confidence            4689999999999999999999999999888 66     56666655543   23322 2222 222333332  69999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |+++|..   .....++.+...   ++++.++..
T Consensus       221 id~~g~~---~~~~~~~~l~~~---G~iv~~g~~  248 (343)
T 3gaz_A          221 YDTLGGP---VLDASFSAVKRF---GHVVSCLGW  248 (343)
T ss_dssp             EESSCTH---HHHHHHHHEEEE---EEEEESCCC
T ss_pred             EECCCcH---HHHHHHHHHhcC---CeEEEEccc
Confidence            9999952   233344444333   477777654

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.87  E-value=8.7e-05  Score=58.64  Aligned_cols=95  Identities=13%  Similarity=0.225  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-C---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccC--CChHH-HHHHhcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-H---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV--LNHES-LVKAIKQ   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~--~~~~~-~~~~~~~   76 (157)
                      +++|+|.| .|.||+.+++.|.++. .   +|++.+.....     .+..+..   ++.+...++  .|.++ +.+++++
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~-----~~~~~~~---g~~~~~~~Vdadnv~~~l~aLl~~   83 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-----VDVAQQY---GVSFKLQQITPQNYLEVIGSTLEE   83 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-----CCHHHHH---TCEEEECCCCTTTHHHHTGGGCCT
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhh-----hhHHhhc---CCceeEEeccchhHHHHHHHHhcC
Confidence            46899999 6999999999999875 4   68888765322     1111212   345555555  45544 5567776


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .|+|||.+-+.   ....++++|.+.|    +-|+.+.
T Consensus        84 ~DvVIN~s~~~---~~l~Im~acleaG----v~YlDTa  114 (480)
T 2ph5_A           84 NDFLIDVSIGI---SSLALIILCNQKG----ALYINAA  114 (480)
T ss_dssp             TCEEEECCSSS---CHHHHHHHHHHHT----CEEEESS
T ss_pred             CCEEEECCccc---cCHHHHHHHHHcC----CCEEECC
Confidence            79999866554   4678999999998    3455553

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.86  E-value=0.00018  Score=57.17  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=34.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +|+|.|+| .|.+|..++..|.+.|++|++.+|+     +++.+.+
T Consensus         4 ~~kIgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l   43 (484)
T 4gwg_A            4 QADIALIG-LAVMGQNLILNMNDHGFVVCAFNRT-----VSKVDDF   43 (484)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS-----THHHHHH
T ss_pred             CCEEEEEC-hhHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHH
Confidence            67999999 6999999999999999999999998     5555443

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.84  E-value=0.00016  Score=52.48  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      |+|+|.|++|.+|+.+++.+.+. +++++.......+     ++.+..   .+.+ +..|++.++...+.+.     +.+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~d-----l~~~~~---~~~D-vvIDfT~p~a~~~~~~~a~~~g~~   71 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDP-----LSLLTD---GNTE-VVIDFTHPDVVMGNLEFLIDNGIH   71 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCC-----THHHHH---TTCC-EEEECSCTTTHHHHHHHHHHTTCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCC-----HHHHhc---cCCc-EEEEccChHHHHHHHHHHHHcCCC
Confidence            48999999999999999999876 7898866544222     111111   1223 5678888877665543     678


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|+-..|... .....+.+++.+.. ...+++.+..
T Consensus        72 ~VigTTG~~~-e~~~~l~~aa~~~~-~~~vv~a~N~  105 (245)
T 1p9l_A           72 AVVGTTGFTA-ERFQQVESWLVAKP-NTSVLIAPNF  105 (245)
T ss_dssp             EEECCCCCCH-HHHHHHHHHHHTST-TCEEEECSCC
T ss_pred             EEEcCCCCCH-HHHHHHHHHHHhCC-CCCEEEECCc
Confidence            8888887543 33344555555442 1345666543

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.84  E-value=1.5e-05  Score=63.95  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|| |++|++++.+|.+.|++|++++|+     .++++.+.+.....+  +.  +.|.+.+  ....+|++||+
T Consensus       364 ~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~-----~~~a~~la~~~~~~~--~~--~~dl~~~--~~~~~DilVN~  431 (523)
T 2o7s_A          364 SKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRT-----YERALELAEAIGGKA--LS--LTDLDNY--HPEDGMVLANT  431 (523)
T ss_dssp             --CEEEECC-SHHHHHHHHHHHHHCC-CEEEESS-----HHHHHHHHHHTTC-C--EE--TTTTTTC----CCSEEEEEC
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHcCCce--ee--HHHhhhc--cccCceEEEEC
Confidence            357999998 799999999999999999999998     666655443322222  21  2221110  12358999999


Q ss_pred             CCCc
Q 040431           84 VGHT   87 (157)
Q Consensus        84 a~~~   87 (157)
                      +|..
T Consensus       432 agvg  435 (523)
T 2o7s_A          432 TSMG  435 (523)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            9874

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.84  E-value=2.6e-05  Score=57.67  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+|.|.| .|.+|..+++.|.+.|++|++.+|+
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRS   33 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCC
Confidence            6899999 6999999999999999999999998

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.84  E-value=4e-05  Score=60.06  Aligned_cols=77  Identities=23%  Similarity=0.372  Sum_probs=49.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC----CCeEE-E-----EccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN----LGVNL-V-----IGDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~v~~-~-----~~D~~~~~~~~~~~   74 (157)
                      |+|.|+| +|++|..++..|.+.|++|++++|+     +++.+.+.....    +++.- +     .+.+....++.+++
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~-----~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~   74 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS-----STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAV   74 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHh
Confidence            4899999 6999999999999999999999988     666655433110    00000 0     00111112233456


Q ss_pred             cCcCEEEEcCCCc
Q 040431           75 KQVDVVISTVGHT   87 (157)
Q Consensus        75 ~~~d~vv~~a~~~   87 (157)
                      +++|+||.+.+..
T Consensus        75 ~~aDvviiaVptp   87 (436)
T 1mv8_A           75 LDSDVSFICVGTP   87 (436)
T ss_dssp             HTCSEEEECCCCC
T ss_pred             ccCCEEEEEcCCC
Confidence            7889999888654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.83  E-value=6.8e-05  Score=55.81  Aligned_cols=35  Identities=31%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +++|.|+||.|.+|.+++..|.+.|++|++++|++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            45899999899999999999999999999998773

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.83  E-value=3.4e-05  Score=57.73  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      +||+|.|+| .|.+|..+++.|.+.|++|++.+|+
T Consensus        20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~   53 (310)
T 3doj_A           20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRT   53 (310)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            468999998 6999999999999999999999998

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.83  E-value=2.5e-05  Score=55.69  Aligned_cols=69  Identities=25%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEE-EecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFV-LVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ||+|.|+| +|.+|.++++.|.+.|++|++ .+|+     +++.+.+.+....  ....   .+.    +.++++|+||.
T Consensus        23 mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~-----~~~~~~l~~~~g~--~~~~---~~~----~~~~~aDvVil   87 (220)
T 4huj_A           23 MTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRG-----PASLSSVTDRFGA--SVKA---VEL----KDALQADVVIL   87 (220)
T ss_dssp             SCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTC-----GGGGHHHHHHHTT--TEEE---CCH----HHHTTSSEEEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCC-----HHHHHHHHHHhCC--Cccc---ChH----HHHhcCCEEEE
Confidence            67999999 799999999999999999998 7777     5555544332221  1111   122    22467888887


Q ss_pred             cCCCc
Q 040431           83 TVGHT   87 (157)
Q Consensus        83 ~a~~~   87 (157)
                      .....
T Consensus        88 avp~~   92 (220)
T 4huj_A           88 AVPYD   92 (220)
T ss_dssp             ESCGG
T ss_pred             eCChH
Confidence            76543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.83  E-value=0.00012  Score=59.05  Aligned_cols=84  Identities=20%  Similarity=0.219  Sum_probs=66.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      ++++|.|+ |.+|+.+++.|.+.|++|+++++++..     .+.+       ..++.+|.+|++.++++ ++++|.+|-.
T Consensus       349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~-----~~~~-------~~~i~gD~t~~~~L~~agi~~ad~vi~~  415 (565)
T 4gx0_A          349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESP-----VCND-------HVVVYGDATVGQTLRQAGIDRASGIIVT  415 (565)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCS-----SCCS-------SCEEESCSSSSTHHHHHTTTSCSEEEEC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHH-----Hhhc-------CCEEEeCCCCHHHHHhcCccccCEEEEE
Confidence            68999996 999999999999999999999998443     2211       17899999999999877 5689999988


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .+..  .....++..+++.+
T Consensus       416 ~~~d--~~ni~~~~~ak~l~  433 (565)
T 4gx0_A          416 TNDD--STNIFLTLACRHLH  433 (565)
T ss_dssp             CSCH--HHHHHHHHHHHHHC
T ss_pred             CCCc--hHHHHHHHHHHHHC
Confidence            7764  34445555566666

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.83  E-value=0.00023  Score=53.46  Aligned_cols=100  Identities=19%  Similarity=0.049  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHh----hh---hcCCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLL----DH---FKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~----~~---~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      |.++++|.|+|+ |.+|..++..|+..|+ +|++++++     +++++..    ..   .......+...  .|.    +
T Consensus         1 M~~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~-----~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~----~   68 (317)
T 2ewd_A            1 MIERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIA-----EGIPQGKALDITHSMVMFGSTSKVIGT--DDY----A   68 (317)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS-----SSHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----G
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCC-----chHHHHHHHHHHhhhhhcCCCcEEEEC--CCH----H
Confidence            766689999997 9999999999999998 99999988     4443321    11   00111112111  122    3


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      .++++|+||..++...             ....+.+++.+.+......++.+|
T Consensus        69 a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~s  121 (317)
T 2ewd_A           69 DISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT  121 (317)
T ss_dssp             GGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            4678999999997543             223456666666664223344444

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.81  E-value=4e-05  Score=60.34  Aligned_cols=97  Identities=13%  Similarity=0.239  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-------------h---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-------------H---   67 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-------------~---   67 (157)
                      ..+|+|+||+|.+|...+..+...|.+|++++++     +++.+.++++....  +  .|..+             +   
T Consensus       229 g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~-----~~~~~~~~~lGa~~--v--i~~~~~d~~~~~~~~~~~~~~~  299 (456)
T 3krt_A          229 GDNVLIWGASGGLGSYATQFALAGGANPICVVSS-----PQKAEICRAMGAEA--I--IDRNAEGYRFWKDENTQDPKEW  299 (456)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHTCCE--E--EETTTTTCCSEEETTEECHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECC-----HHHHHHHHhhCCcE--E--EecCcCcccccccccccchHHH
Confidence            4689999999999999999999999999999876     77777666553211  1  22222             1   


Q ss_pred             ----HHHHHHhc--CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           68 ----ESLVKAIK--QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        68 ----~~~~~~~~--~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                          +.+.++..  ++|+||+++|..   .....++.+...   ++++.+++..
T Consensus       300 ~~~~~~i~~~t~g~g~Dvvid~~G~~---~~~~~~~~l~~~---G~iv~~G~~~  347 (456)
T 3krt_A          300 KRFGKRIRELTGGEDIDIVFEHPGRE---TFGASVFVTRKG---GTITTCASTS  347 (456)
T ss_dssp             HHHHHHHHHHHTSCCEEEEEECSCHH---HHHHHHHHEEEE---EEEEESCCTT
T ss_pred             HHHHHHHHHHhCCCCCcEEEEcCCch---hHHHHHHHhhCC---cEEEEEecCC
Confidence                33444443  699999999862   233344433332   5788876543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.80  E-value=0.00018  Score=54.09  Aligned_cols=95  Identities=16%  Similarity=0.203  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhH----hhh---hcCCCeEEEEccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQL----LDH---FKNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~----~~~---~~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      ++||.|+|| |.+|++++..|+..+  .+|..++++     +++++-    +.+   +...++.+.. |  +    .+.+
T Consensus         6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~-----~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLD-----TEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDC   72 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSC-----HHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCC-----hhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHh
Confidence            469999998 999999999999887  478888876     433321    111   1112344433 2  2    2347


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +++|+||..++...             ....+.+.+.+.+......++.+
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVA  122 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            89999999998865             12345566666666423444443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.80  E-value=0.0002  Score=53.39  Aligned_cols=96  Identities=18%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhh----Hhhhh---cCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQ----LLDHF---KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~----~~~~~---~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |||.|+|+ |.+|.+++..|+..|+  +|.+++++     +++++    .+.+.   ......+...  .|    .+.++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~-----~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~   68 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIA-----EDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLK   68 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSS-----HHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECC-----hHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhC
Confidence            58999998 9999999999999887  89999988     54443    11111   1122233322  12    24578


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ++|+||..+|...             ....+.+.+.+.+.+....++.+|
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs  118 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            9999999998864             233556666677765234555554

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.79  E-value=0.00016  Score=54.28  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=61.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-C--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-G--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |||.|+||+|.+|+.++..|... +  .++++++.+. .. +...-.+.+. ...+.+....-.+   ..+.++++|+||
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~-~G~a~Dl~~~-~~~~~v~~~~~~~---~~~~~~~aDivi   74 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VT-PGVAVDLSHI-PTAVKIKGFSGED---ATPALEGADVVL   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-TH-HHHHHHHHTS-CSSEEEEEECSSC---CHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cc-hhHHHHhhCC-CCCceEEEecCCC---cHHHhCCCCEEE
Confidence            58999999999999999999875 4  4788888873 11 1111122222 1122222110012   234578999999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ..+|...             ....+.+.+.+.+......++.+|
T Consensus        75 i~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt  118 (312)
T 3hhp_A           75 ISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT  118 (312)
T ss_dssp             ECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence            9998865             233556667776665233455554

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.78  E-value=3.5e-05  Score=56.94  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |++|.|.| .|.+|..+++.|.+.|++|++.+|+
T Consensus         1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~   33 (287)
T 3pdu_A            1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRN   33 (287)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            35899998 6999999999999999999999998

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.77  E-value=0.00013  Score=56.26  Aligned_cols=100  Identities=16%  Similarity=0.056  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhh-c-------CCCeEEEEccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHF-K-------NLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~-~-------~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      +++|.|.||||++|+.+++.|.++. .++..+.-++... -.+......+ .       ..++.+...|..+      .+
T Consensus        19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~sa-Gk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~------~~   91 (381)
T 3hsk_A           19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSA-GKKYKDAASWKQTETLPETEQDIVVQECKPEG------NF   91 (381)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTT-TSBHHHHCCCCCSSCCCHHHHTCBCEESSSCT------TG
T ss_pred             ccEEEEECCCChHHHHHHHHHHcCCCceEEEeecccccc-CCCHHHhcccccccccccccccceEEeCchhh------hc
Confidence            5689999999999999999887765 3665553221111 1112111000 0       0122222232210      24


Q ss_pred             cCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           75 KQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        75 ~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      .++|+||.+.+..   .+..+...+.+.|  .++|=.|+..
T Consensus        92 ~~~Dvvf~alp~~---~s~~~~~~~~~~G--~~VIDlSa~f  127 (381)
T 3hsk_A           92 LECDVVFSGLDAD---VAGDIEKSFVEAG--LAVVSNAKNY  127 (381)
T ss_dssp             GGCSEEEECCCHH---HHHHHHHHHHHTT--CEEEECCSTT
T ss_pred             ccCCEEEECCChh---HHHHHHHHHHhCC--CEEEEcCCcc
Confidence            6799999988775   3667888888877  4577777743

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.76  E-value=5.7e-05  Score=55.71  Aligned_cols=71  Identities=15%  Similarity=0.239  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++|+|+ |.+|++++..|.+.|. +|++.+|+     .++++.+.+. ...++...  ++.+.+   .  .++|+||
T Consensus       120 ~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~-----~~~a~~la~~~~~~~~~~~--~~~~l~---~--~~~DivI  186 (272)
T 3pwz_A          120 NRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRD-----MAKALALRNELDHSRLRIS--RYEALE---G--QSFDIVV  186 (272)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSC-----HHHHHHHHHHHCCTTEEEE--CSGGGT---T--CCCSEEE
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHHhccCCeeEe--eHHHhc---c--cCCCEEE
Confidence            578999996 8999999999999995 89999998     6666655433 22123333  222221   1  5789999


Q ss_pred             EcCCCc
Q 040431           82 STVGHT   87 (157)
Q Consensus        82 ~~a~~~   87 (157)
                      |..+..
T Consensus       187 naTp~g  192 (272)
T 3pwz_A          187 NATSAS  192 (272)
T ss_dssp             ECSSGG
T ss_pred             ECCCCC
Confidence            987764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.76  E-value=0.00035  Score=52.17  Aligned_cols=93  Identities=23%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc----------CCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK----------NLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----------~~~v~~~~~D~~~~~~~~~~   73 (157)
                      |++|.++| .|..|.+++++|++.||+|++.+|+     +++.+.+.+..          -.+.+++-.=+.|.+.+++.
T Consensus         3 M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~-----~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V   76 (300)
T 3obb_A            3 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLV-----QSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGL   76 (300)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSS-----HHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHH
T ss_pred             cCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCC-----HHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHH
Confidence            67899999 7999999999999999999999998     66655443211          02345555556788888877


Q ss_pred             hcC----------cCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           74 IKQ----------VDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        74 ~~~----------~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +.+          -+++|+.... ....++.+.+.+.+.|
T Consensus        77 ~~~~~g~~~~~~~g~iiId~sT~-~p~~~~~~a~~~~~~G  115 (300)
T 3obb_A           77 YLDDDGLLAHIAPGTLVLECSTI-APTSARKIHAAARERG  115 (300)
T ss_dssp             HHSSSSSTTSCCC-CEEEECSCC-CHHHHHHHHHHHHTTT
T ss_pred             HhchhhhhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcC
Confidence            642          1455555544 4677888888888876

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.76  E-value=3.8e-05  Score=57.68  Aligned_cols=94  Identities=13%  Similarity=0.158  Sum_probs=59.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh--HHHHHHh-cCcCEEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH--ESLVKAI-KQVDVVIS   82 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~--~~~~~~~-~~~d~vv~   82 (157)
                      +|+|+||+|.+|...++.+...|.+|++++++     +++.+.++++..   .. ..|..+.  +.+.++- .++|++|+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~-----~~~~~~~~~lGa---~~-~i~~~~~~~~~~~~~~~~~~d~vid  222 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGK-----AAEHDYLRVLGA---KE-VLAREDVMAERIRPLDKQRWAAAVD  222 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESC-----TTCHHHHHHTTC---SE-EEECC---------CCSCCEEEEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHcCC---cE-EEecCCcHHHHHHHhcCCcccEEEE
Confidence            79999999999999999999999999999988     555555555432   11 1344433  1122222 25899999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|...   ....++.+...   ++++.++..
T Consensus       223 ~~g~~~---~~~~~~~l~~~---G~~v~~G~~  248 (328)
T 1xa0_A          223 PVGGRT---LATVLSRMRYG---GAVAVSGLT  248 (328)
T ss_dssp             CSTTTT---HHHHHHTEEEE---EEEEECSCC
T ss_pred             CCcHHH---HHHHHHhhccC---CEEEEEeec
Confidence            998742   23333333332   578877653

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.74  E-value=4e-05  Score=56.77  Aligned_cols=40  Identities=33%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +|+|.|+| .|.+|..++..|.+.|++|++.+|+     +++.+.+
T Consensus         5 ~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~-----~~~~~~~   44 (299)
T 1vpd_A            5 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRN-----PEAIADV   44 (299)
T ss_dssp             -CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC-----HHHHHHH
T ss_pred             cceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHH
Confidence            46899999 6999999999999999999999887     5555444

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.72  E-value=7.6e-05  Score=56.45  Aligned_cols=94  Identities=15%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHh-cCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAI-KQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~-~~~d   78 (157)
                      ..+|+|+|| |.+|..+++.+...|. +|++++++     +++.+.++++ ..    ...|..+.+   .+.++. .++|
T Consensus       165 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~-----~~~~~~~~~l-a~----~v~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          165 GKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPN-----PYRLAFARPY-AD----RLVNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSC-----HHHHGGGTTT-CS----EEECTTTSCHHHHHHHHHSSCEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHh-HH----hccCcCccCHHHHHHHhcCCCCC
Confidence            458999999 9999999999998998 99999887     6666555443 21    124554422   222222 2689


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++|+++|...  .....++.+...   ++++.++.
T Consensus       234 ~vid~~g~~~--~~~~~~~~l~~~---G~iv~~g~  263 (343)
T 2dq4_A          234 VLLEFSGNEA--AIHQGLMALIPG---GEARILGI  263 (343)
T ss_dssp             EEEECSCCHH--HHHHHHHHEEEE---EEEEECCC
T ss_pred             EEEECCCCHH--HHHHHHHHHhcC---CEEEEEec
Confidence            9999998631  233444444333   47888765

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.72  E-value=4.6e-05  Score=56.46  Aligned_cols=71  Identities=21%  Similarity=0.246  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCC--CeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNL--GVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~--~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++++|+|+ |.+|++++..|.+.|. +|++.+|+     +++.+.+.+....  .+....  +.+   +   ..++|+|
T Consensus       126 ~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~-----~~~a~~la~~~~~~~~~~~~~--~~~---l---~~~aDiI  191 (281)
T 3o8q_A          126 GATILLIGA-GGAARGVLKPLLDQQPASITVTNRT-----FAKAEQLAELVAAYGEVKAQA--FEQ---L---KQSYDVI  191 (281)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESS-----HHHHHHHHHHHGGGSCEEEEE--GGG---C---CSCEEEE
T ss_pred             CCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECC-----HHHHHHHHHHhhccCCeeEee--HHH---h---cCCCCEE
Confidence            578999996 8999999999999995 89999998     6666554332211  233332  222   1   1578999


Q ss_pred             EEcCCCcc
Q 040431           81 ISTVGHTL   88 (157)
Q Consensus        81 v~~a~~~~   88 (157)
                      |+..+...
T Consensus       192 InaTp~gm  199 (281)
T 3o8q_A          192 INSTSASL  199 (281)
T ss_dssp             EECSCCCC
T ss_pred             EEcCcCCC
Confidence            99887653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.71  E-value=4.6e-05  Score=57.28  Aligned_cols=34  Identities=15%  Similarity=0.007  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~   38 (157)
                      +|+|.|+| .|.+|..++..|.+.| ++|++.+|++
T Consensus        24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57899999 6999999999999999 9999999984

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.71  E-value=4.1e-05  Score=57.99  Aligned_cols=89  Identities=21%  Similarity=0.126  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHh----hhh---cCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLL----DHF---KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~----~~~---~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      +|||.|+|| |.+|.+++..|+..|+ +|++++++     +++++..    .+.   ......+..     ..++.+.++
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~-----~~~~~~~~~~l~~~~~~~~~~~~i~~-----t~d~~ea~~   77 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVV-----KGMPEGKALDLSHVTSVVDTNVSVRA-----EYSYEAALT   77 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS-----SSHHHHHHHHHHHHHHHTTCCCCEEE-----ECSHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECC-----hhHHHHHHHHHHhhhhccCCCCEEEE-----eCCHHHHhC
Confidence            368999997 9999999999999998 99999888     4444321    111   011111111     123445678


Q ss_pred             CcCEEEEcCCCcc------------------hHHHHHHHHHHHHhc
Q 040431           76 QVDVVISTVGHTL------------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        76 ~~d~vv~~a~~~~------------------~~~~~~l~~~~~~~~  103 (157)
                      ++|+||..+|...                  ....+.+++.+.+..
T Consensus        78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~  123 (331)
T 1pzg_A           78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC  123 (331)
T ss_dssp             TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999996542                  122556777777664

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.70  E-value=0.00028  Score=53.50  Aligned_cols=95  Identities=20%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC----hHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN----HESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~~~~~~~----   75 (157)
                      ..+|+|+|+ |.+|...++.+...|.+|++++++     +++.+.++++...  .  ..|..+    .+.+.+...    
T Consensus       169 g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~-----~~~~~~~~~lGa~--~--~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          169 GTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARS-----PRRLEVAKNCGAD--V--TLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCS--E--EEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHhCCC--E--EEcCcccccHHHHHHHHhccccC
Confidence            468999996 999999999998899999888887     6676666554322  1  223332    345555543    


Q ss_pred             -CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           76 -QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        76 -~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                       ++|++|+++|...  .....++.+...   ++++.++.
T Consensus       239 ~g~D~vid~~g~~~--~~~~~~~~l~~~---G~iv~~G~  272 (352)
T 1e3j_A          239 DLPNVTIDCSGNEK--CITIGINITRTG---GTLMLVGM  272 (352)
T ss_dssp             SCCSEEEECSCCHH--HHHHHHHHSCTT---CEEEECSC
T ss_pred             CCCCEEEECCCCHH--HHHHHHHHHhcC---CEEEEEec
Confidence             6999999998642  123344444332   57888764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.69  E-value=5.6e-05  Score=54.87  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +||+|.|+| .|.+|+.+++.|.+.|++|.+.+|+     +++.+.+
T Consensus         2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~-----~~~~~~~   42 (259)
T 2ahr_A            2 NAMKIGIIG-VGKMASAIIKGLKQTPHELIISGSS-----LERSKEI   42 (259)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSS-----HHHHHHH
T ss_pred             CccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCC-----HHHHHHH
Confidence            467999999 6999999999999999999998887     5555444

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=97.69  E-value=0.00017  Score=55.87  Aligned_cols=72  Identities=24%  Similarity=0.306  Sum_probs=54.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |+++++|+|+|| |.+|..+++.+.+.|++|++++ .+... ..   .   .. .....+..|..|.+.+.++.+.+|+|
T Consensus        21 mm~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p-~~---~---~a-d~~~~~~~~~~d~~~l~~~a~~~d~i   90 (403)
T 3k5i_A           21 MWNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSP-AK---Q---IS-AHDGHVTGSFKEREAVRQLAKTCDVV   90 (403)
T ss_dssp             CCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCT-TG---G---GC-CSSCCEESCTTCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCc-HH---H---hc-cccceeecCCCCHHHHHHHHHhCCEE
Confidence            433679999995 8999999999999999999998 53221 11   1   11 11245678999999999999999988


Q ss_pred             EE
Q 040431           81 IS   82 (157)
Q Consensus        81 v~   82 (157)
                      +-
T Consensus        91 ~~   92 (403)
T 3k5i_A           91 TA   92 (403)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.69  E-value=6.3e-05  Score=57.46  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC--hHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN--HESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~~~~~~~d~vv   81 (157)
                      ..+|+|+|| |.+|..+++.+...|.+|++++++...  .++.+.++++.   ...+  | .+  .+.+.+.-.++|++|
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~--~~~~~~~~~~g---a~~v--~-~~~~~~~~~~~~~~~d~vi  251 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPT--EVEQTVIEETK---TNYY--N-SSNGYDKLKDSVGKFDVII  251 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCC--HHHHHHHHHHT---CEEE--E-CTTCSHHHHHHHCCEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccc--hHHHHHHHHhC---Ccee--c-hHHHHHHHHHhCCCCCEEE
Confidence            578999999 999999999999999999999988210  15665555442   3333  4 33  223333114699999


Q ss_pred             EcCCCcchHHH-HHHHHHHHHhcCCccEEEeccc
Q 040431           82 STVGHTLLADQ-VKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        82 ~~a~~~~~~~~-~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +++|...  .. ...++.+..   .++++.++..
T Consensus       252 d~~g~~~--~~~~~~~~~l~~---~G~iv~~g~~  280 (366)
T 2cdc_A          252 DATGADV--NILGNVIPLLGR---NGVLGLFGFS  280 (366)
T ss_dssp             ECCCCCT--HHHHHHGGGEEE---EEEEEECSCC
T ss_pred             ECCCChH--HHHHHHHHHHhc---CCEEEEEecC
Confidence            9999753  12 233333322   2578887654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.67  E-value=0.00043  Score=52.05  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=60.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhh----Hhhh---hcCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQ----LLDH---FKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~----~~~~---~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |||.|+|+ |.+|+.++..|+..|.  +|++++++     +++++    .+.+   +...++.+...|  +.    +.++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~-----~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~~----~a~~   68 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIK-----DGMPQGKALDMRESSPIHGFDTRVTGTN--DY----GPTE   68 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSS-----TTHHHHHHHHHHHHHHHHTCCCEEEEES--SS----GGGT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCc-----hHHHHHHHHHHhccccccCCCcEEEECC--CH----HHhC
Confidence            58999996 9999999999999886  89999988     44433    1221   111233333222  22    3578


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ++|+||..+|...             ....+.+.+.+.+......++.+|
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  118 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA  118 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence            9999999999864             222455666666664234455544

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.67  E-value=0.00046  Score=52.13  Aligned_cols=96  Identities=18%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHh-hhhcC-----CCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLL-DHFKN-----LGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-~~~~~-----~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      ++||.|+|| |.+|+.++..|+..+.  ++++++++     +++++-. .++.+     .++.+.. |  +    .+.++
T Consensus         9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~-----~~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~~   75 (326)
T 2zqz_A            9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIF-----KDKTKGDAIDLSNALPFTSPKKIYS-A--E----YSDAK   75 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSC-----HHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCC-----chHhHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhC
Confidence            479999998 9999999999988775  79899886     4444321 11111     2333333 2  2    23478


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ++|+||..++...             ....+.+++.+.+.....+++.+|
T Consensus        76 ~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  125 (326)
T 2zqz_A           76 DADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             GCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            9999999998865             123455666666665234555543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.66  E-value=7.4e-05  Score=55.14  Aligned_cols=33  Identities=30%  Similarity=0.388  Sum_probs=28.4

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      +||+|.|+| .|.+|+.+++.|.+.|++|++.+ +
T Consensus         2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~-~   34 (295)
T 1yb4_A            2 NAMKLGFIG-LGIMGSPMAINLARAGHQLHVTT-I   34 (295)
T ss_dssp             --CEEEECC-CSTTHHHHHHHHHHTTCEEEECC-S
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEEc-C
Confidence            467999999 69999999999999999998876 5

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.66  E-value=0.00013  Score=57.23  Aligned_cols=104  Identities=18%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCC----CeEE------EEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL----GVNL------VIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~----~v~~------~~~D~~~~~~~~~~   73 (157)
                      |.+|.|.| .|++|..++..|.+.|++|++++.+     +++.+.+.....+    +++-      -.+.+.-..+..++
T Consensus        21 m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did-----~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~a   94 (444)
T 3vtf_A           21 MASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVN-----PSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEA   94 (444)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSC-----HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHH
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECC-----HHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHH
Confidence            66899998 7999999999999999999999988     6666655432110    0000      00011111123344


Q ss_pred             hcCcCEEEEcCCCcc-----------hHHHHHHHHHHHHhcCCcc-EEEeccc
Q 040431           74 IKQVDVVISTVGHTL-----------LADQVKIIAAIKEAEGASR-GTLRTQK  114 (157)
Q Consensus        74 ~~~~d~vv~~a~~~~-----------~~~~~~l~~~~~~~~~~~~-~v~~Ss~  114 (157)
                      +..+|++|-+.+...           ....+.+.+.++..+ ..+ +|+-||+
T Consensus        95 i~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~-~g~lVV~eSTV  146 (444)
T 3vtf_A           95 VAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKG-RWHLVVVKSTV  146 (444)
T ss_dssp             HHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHC-SCCEEEECSCC
T ss_pred             HhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcC-CCeEEEEeCCC
Confidence            567899888776432           223445555565543 333 5555554

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.65  E-value=0.00037  Score=50.66  Aligned_cols=106  Identities=21%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhhHh----hhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQLL----DHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~~~----~~~~-~~~v~~~~~D   63 (157)
                      ..+|+|.|+ |.+|+++++.|...|. ++++++++.-.              ....|.+.+    .+.. ...+..+..+
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  106 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR  106 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            468999996 7799999999999996 67777665310              011333322    2221 2234444444


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      + +.+.+.++++++|+||+.....  ..-..+-+++.+.+ + .+|+.+..+
T Consensus       107 ~-~~~~~~~~~~~~DvVi~~~d~~--~~r~~l~~~~~~~~-~-p~i~~~~~g  153 (251)
T 1zud_1          107 L-TGEALKDAVARADVVLDCTDNM--ATRQEINAACVALN-T-PLITASAVG  153 (251)
T ss_dssp             C-CHHHHHHHHHHCSEEEECCSSH--HHHHHHHHHHHHTT-C-CEEEEEEEB
T ss_pred             C-CHHHHHHHHhcCCEEEECCCCH--HHHHHHHHHHHHhC-C-CEEEEeccc
Confidence            4 4566778888999999887643  33345566677765 4 366655433

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=97.65  E-value=0.00023  Score=54.67  Aligned_cols=94  Identities=15%  Similarity=0.225  Sum_probs=57.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh-CCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK-AGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~-~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |++|.|.||||++|+.+++.+++ +++   +++.+..++.+.   ..   ..+....+.  ..|..+++.    +.++|+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~---~v---~~~~g~~i~--~~~~~~~~~----~~~~Dv   68 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ---AA---PSFGGTTGT--LQDAFDLEA----LKALDI   68 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS---BC---CGGGTCCCB--CEETTCHHH----HHTCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC---Cc---cccCCCceE--EEecCChHH----hcCCCE
Confidence            35899999999999999995544 443   455555442221   11   111122222  223334444    358999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCc-cEEEecc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGAS-RGTLRTQ  113 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~-~~v~~Ss  113 (157)
                      ||.+.|..   .+..+...+.+.| .+ .+|=.|+
T Consensus        69 Vf~a~g~~---~s~~~a~~~~~~G-~k~vVID~ss   99 (367)
T 1t4b_A           69 IVTCQGGD---YTNEIYPKLRESG-WQGYWIDAAS   99 (367)
T ss_dssp             EEECSCHH---HHHHHHHHHHHTT-CCCEEEECSS
T ss_pred             EEECCCch---hHHHHHHHHHHCC-CCEEEEcCCh
Confidence            99998865   4677888888887 43 3444444

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.64  E-value=0.00015  Score=55.34  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhc--CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIK--QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~--~~d~v   80 (157)
                      ..+|+|+| +|.+|...++.+...|.+|++++++     +++.+.++++...  .++.-+-.+ .+.+.++..  ++|++
T Consensus       190 g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~-----~~~~~~~~~lGa~--~vi~~~~~~~~~~v~~~~~g~g~D~v  261 (363)
T 3uog_A          190 GDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSS-----REKLDRAFALGAD--HGINRLEEDWVERVYALTGDRGADHI  261 (363)
T ss_dssp             TCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTCS--EEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecC-----chhHHHHHHcCCC--EEEcCCcccHHHHHHHHhCCCCceEE
Confidence            46899999 8999999999999999999999887     6677666655321  112111112 223434433  69999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |+++|...   ....++.+...   ++++.++...
T Consensus       262 id~~g~~~---~~~~~~~l~~~---G~iv~~G~~~  290 (363)
T 3uog_A          262 LEIAGGAG---LGQSLKAVAPD---GRISVIGVLE  290 (363)
T ss_dssp             EEETTSSC---HHHHHHHEEEE---EEEEEECCCS
T ss_pred             EECCChHH---HHHHHHHhhcC---CEEEEEecCC
Confidence            99999543   33344444443   5788887644

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.64  E-value=0.00035  Score=52.17  Aligned_cols=72  Identities=28%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhhh-hc------CCCeEEEEccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLDH-FK------NLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~-~~------~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      ||+|.|+| +|.+|..++..|++.|  ++|++++|+     +++++.+.. ..      ...+.....   |.    +.+
T Consensus         1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~---d~----~~~   67 (309)
T 1hyh_A            1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDAN-----EAKVKADQIDFQDAMANLEAHGNIVIN---DW----AAL   67 (309)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSS-----HHHHHHHHHHHHHHGGGSSSCCEEEES---CG----GGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCC-----HHHHHHHHHHHHhhhhhcCCCeEEEeC---CH----HHh
Confidence            36899999 6999999999999999  799999988     555543321 11      112333222   32    346


Q ss_pred             cCcCEEEEcCCCcc
Q 040431           75 KQVDVVISTVGHTL   88 (157)
Q Consensus        75 ~~~d~vv~~a~~~~   88 (157)
                      +++|+||..++...
T Consensus        68 ~~aDvViiav~~~~   81 (309)
T 1hyh_A           68 ADADVVISTLGNIK   81 (309)
T ss_dssp             TTCSEEEECCSCGG
T ss_pred             CCCCEEEEecCCcc
Confidence            78999999998754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.64  E-value=0.00016  Score=55.36  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=56.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC-----CCeEEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN-----LGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      +|+|.|.|+ |.+|.+++..|.+.|++|++.+|+     +++.+.+.+...     +++.+ ...+.-..++.++++++|
T Consensus        29 ~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~-----~~~~~~i~~~~~~~~~l~g~~l-~~~i~~t~d~~ea~~~aD  101 (356)
T 3k96_A           29 KHPIAILGA-GSWGTALALVLARKGQKVRLWSYE-----SDHVDEMQAEGVNNRYLPNYPF-PETLKAYCDLKASLEGVT  101 (356)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHTTTCCEEEECSC-----HHHHHHHHHHSSBTTTBTTCCC-CTTEEEESCHHHHHTTCC
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHcCCCcccCCCCcc-CCCeEEECCHHHHHhcCC
Confidence            578999995 999999999999999999999998     666555443211     11110 001111123455678899


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHH
Q 040431           79 VVISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~  101 (157)
                      +||-+....   ....+++.+..
T Consensus       102 vVilaVp~~---~~~~vl~~i~~  121 (356)
T 3k96_A          102 DILIVVPSF---AFHEVITRMKP  121 (356)
T ss_dssp             EEEECCCHH---HHHHHHHHHGG
T ss_pred             EEEECCCHH---HHHHHHHHHHH
Confidence            999777553   34445555444

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.63  E-value=0.00057  Score=50.88  Aligned_cols=97  Identities=15%  Similarity=0.116  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCch------hhHhhhhcCCCeEEEEccCCChHHHHHHh---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK------SQLLDHFKNLGVNLVIGDVLNHESLVKAI---   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~------~~~~~~~~~~~v~~~~~D~~~~~~~~~~~---   74 (157)
                      .+||.++| .|.+|..+++.|++.||+|++.+|++...++..      .+.+.+.. .+.+++-.=+.++..+.+.+   
T Consensus         5 s~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~~dvvi~~l~~~~~~~~v~~~~   82 (297)
T 4gbj_A            5 SEKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAI-TPGGIVFSVLADDAAVEELFSME   82 (297)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGC-CTTCEEEECCSSHHHHHHHSCHH
T ss_pred             CCcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHH-hcCCceeeeccchhhHHHHHHHH
Confidence            35899999 799999999999999999999999854321110      00111111 12233333344554444432   


Q ss_pred             -----cCcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           75 -----KQVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        75 -----~~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                           ..-+++|+.... ....++.+.+.+.+.|
T Consensus        83 ~~~~~~~~~iiid~sT~-~p~~~~~~~~~~~~~g  115 (297)
T 4gbj_A           83 LVEKLGKDGVHVSMSTI-SPETSRQLAQVHEWYG  115 (297)
T ss_dssp             HHHHHCTTCEEEECSCC-CHHHHHHHHHHHHHTT
T ss_pred             HHhhcCCCeEEEECCCC-ChHHHHHHHHHHHhcC
Confidence                 233466665554 4666777888887776

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.63  E-value=0.00084  Score=50.47  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCC--CCCCCchhhHhh--hhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRES--TISGPSKSQLLD--HFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~--~~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      .++|.|+|+ |.+|..++..|+..|+ +|+++++++  ........+...  .+......+...  .|.    +.++++|
T Consensus         8 ~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d~----~a~~~aD   80 (315)
T 3tl2_A            8 RKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SDY----ADTADSD   80 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGGTTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CCH----HHhCCCC
Confidence            469999996 9999999999999999 999998872  110000011111  111112222211  122    3568999


Q ss_pred             EEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           79 VVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        79 ~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +||..+|...             ....+.+.+.+.+......++.+|
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs  127 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT  127 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence            9999998765             223556667776665234555554

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.62  E-value=0.00029  Score=53.89  Aligned_cols=74  Identities=16%  Similarity=0.292  Sum_probs=51.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh--cCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI--KQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~--~~~d~vv   81 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++ +     +++.+.++++.   .. ...|..+.+..+++.  .++|++|
T Consensus       184 g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~-----~~~~~~~~~lG---a~-~v~~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          184 GKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-S-----QDASELVRKLG---AD-DVIDYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-C-----GGGHHHHHHTT---CS-EEEETTSSCHHHHHHTSCCBSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-C-----hHHHHHHHHcC---CC-EEEECCchHHHHHHhhcCCCCEEE
Confidence            46899999999999999999999999998876 3     33444444442   11 123554443333333  3799999


Q ss_pred             EcCCCc
Q 040431           82 STVGHT   87 (157)
Q Consensus        82 ~~a~~~   87 (157)
                      +++|..
T Consensus       254 d~~g~~  259 (375)
T 2vn8_A          254 DNVGGS  259 (375)
T ss_dssp             ESSCTT
T ss_pred             ECCCCh
Confidence            999875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.62  E-value=0.00013  Score=56.64  Aligned_cols=72  Identities=22%  Similarity=0.292  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |.+|+.+++.|...|. +|++++|+     +++.+.+.....  ...  .+   .+++.+.+.++|+||+
T Consensus       167 g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~-----~~ra~~la~~~g--~~~--~~---~~~l~~~l~~aDvVi~  233 (404)
T 1gpj_A          167 DKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRT-----YERAVELARDLG--GEA--VR---FDELVDHLARSDVVVS  233 (404)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSS-----HHHHHHHHHHHT--CEE--CC---GGGHHHHHHTCSEEEE
T ss_pred             CCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCC-----HHHHHHHHHHcC--Cce--ec---HHhHHHHhcCCCEEEE
Confidence            578999997 9999999999999998 89999888     666533322211  221  22   3356677789999999


Q ss_pred             cCCCcc
Q 040431           83 TVGHTL   88 (157)
Q Consensus        83 ~a~~~~   88 (157)
                      +.+...
T Consensus       234 at~~~~  239 (404)
T 1gpj_A          234 ATAAPH  239 (404)
T ss_dssp             CCSSSS
T ss_pred             ccCCCC
Confidence            988654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.61  E-value=0.00022  Score=53.07  Aligned_cols=104  Identities=20%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC-------------CCCCchhhH----hhhhc-CCCeEEEEccC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST-------------ISGPSKSQL----LDHFK-NLGVNLVIGDV   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~-------------~~~~~~~~~----~~~~~-~~~v~~~~~D~   64 (157)
                      ..+|+|.|+ |.+|+++++.|...|. ++++++.+.-             +....|.+.    +.+.. ...+..+..++
T Consensus        36 ~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l  114 (292)
T 3h8v_A           36 TFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNI  114 (292)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCT
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccC
Confidence            458999995 9999999999999995 6888876641             111233332    22332 23456666777


Q ss_pred             CChHHHHHHh-----------cCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           65 LNHESLVKAI-----------KQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        65 ~~~~~~~~~~-----------~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ++.+.+.+++           +++|+||+..-...  .-..+-++|.+.+ ++ +++.+
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~--~R~~in~~c~~~~-~P-li~~g  169 (292)
T 3h8v_A          115 TTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFE--ARMTINTACNELG-QT-WMESG  169 (292)
T ss_dssp             TSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHH--HHHHHHHHHHHHT-CC-EEEEE
T ss_pred             CcHHHHHHHhhhhcccccccCCCCCEEEECCcchh--hhhHHHHHHHHhC-CC-EEEee
Confidence            7666666654           58999998876653  2234666788887 44 55443

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.61  E-value=7e-05  Score=54.15  Aligned_cols=40  Identities=15%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC----cEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH----PTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~----~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +|+|.|.| .|.+|.++++.|.+.|+    +|++.+|+     +++.+.+
T Consensus         2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~~~~r~-----~~~~~~~   45 (247)
T 3gt0_A            2 DKQIGFIG-CGNMGMAMIGGMINKNIVSSNQIICSDLN-----TANLKNA   45 (247)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEEEECSC-----HHHHHHH
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEEEEeCC-----HHHHHHH
Confidence            67899999 69999999999999998    99999988     6555544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.61  E-value=0.0002  Score=52.70  Aligned_cols=66  Identities=17%  Similarity=0.183  Sum_probs=48.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |..|++++..|.+.|.+|++.+|+     +++++.+.++.   +...  ++.+.       .++|+|||.
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt-----~~ka~~la~~~---~~~~--~~~~l-------~~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRS-----SRGLDFFQRLG---CDCF--MEPPK-------SAFDLIINA  179 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS-----CTTHHHHHHHT---CEEE--SSCCS-------SCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHCC---CeEe--cHHHh-------ccCCEEEEc
Confidence            468999995 999999999999999999999999     66665554321   2222  22221       278999988


Q ss_pred             CCCc
Q 040431           84 VGHT   87 (157)
Q Consensus        84 a~~~   87 (157)
                      .+..
T Consensus       180 Tp~G  183 (269)
T 3phh_A          180 TSAS  183 (269)
T ss_dssp             CTTC
T ss_pred             ccCC
Confidence            7664

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.60  E-value=0.00019  Score=54.99  Aligned_cols=96  Identities=15%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+|+|+|+ |.+|...++.+...|.+|++++++     +++.+.++++...    ...|..+.+.++++..++|++|++
T Consensus       195 g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~-----~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~g~Dvvid~  264 (369)
T 1uuf_A          195 GKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTS-----EAKREAAKALGAD----EVVNSRNADEMAAHLKSFDFILNT  264 (369)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS-----GGGHHHHHHHTCS----EEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCCc----EEeccccHHHHHHhhcCCCEEEEC
Confidence            468999997 889999999998899999999988     6666666554321    124566665555555689999999


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|...  .....++.++..   ++++.++..
T Consensus       265 ~g~~~--~~~~~~~~l~~~---G~iv~~G~~  290 (369)
T 1uuf_A          265 VAAPH--NLDDFTTLLKRD---GTMTLVGAP  290 (369)
T ss_dssp             CSSCC--CHHHHHTTEEEE---EEEEECCCC
T ss_pred             CCCHH--HHHHHHHHhccC---CEEEEeccC
Confidence            99742  122333333332   477777653

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.60  E-value=0.00034  Score=53.66  Aligned_cols=68  Identities=21%  Similarity=0.291  Sum_probs=53.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +++|+|+|+ |.+|..+++.+.+.|++|++++..+...  .     ...   .-.++..|..|.+.+.++.+.+|+|..
T Consensus        12 ~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p--~-----~~~---ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A           12 GATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCP--C-----RYV---AHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCT--T-----GGG---SSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCh--h-----hhh---CCEEEECCCCCHHHHHHHHHhCCccee
Confidence            568999995 8899999999999999999998764321  1     011   124667899999999999988998854

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.59  E-value=0.00054  Score=49.43  Aligned_cols=70  Identities=19%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCch--------------hhHhhhhcCCCeEEEEccCCChHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK--------------SQLLDHFKNLGVNLVIGDVLNHES   69 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~--------------~~~~~~~~~~~v~~~~~D~~~~~~   69 (157)
                      .++|.|+| +|.+|+++++.|.+.|++|++.+|+     +++              .+.+.... ....        ..+
T Consensus        19 ~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~   83 (245)
T 3dtt_A           19 GMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRD-----PKATLARAEPDAMGAPPFSQWLPEH-PHVH--------LAA   83 (245)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHTCC-------CCHHHHGGGS-TTCE--------EEE
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCC-----hhhhhhhhhhhhhcchhhhHHHhhc-Ccee--------ccC
Confidence            57899998 7999999999999999999999988     433              22111111 1111        123


Q ss_pred             HHHHhcCcCEEEEcCCCcc
Q 040431           70 LVKAIKQVDVVISTVGHTL   88 (157)
Q Consensus        70 ~~~~~~~~d~vv~~a~~~~   88 (157)
                      ..++++++|+||.+.....
T Consensus        84 ~~e~~~~aDvVilavp~~~  102 (245)
T 3dtt_A           84 FADVAAGAELVVNATEGAS  102 (245)
T ss_dssp             HHHHHHHCSEEEECSCGGG
T ss_pred             HHHHHhcCCEEEEccCcHH
Confidence            4456778999999888765

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.59  E-value=0.00028  Score=52.61  Aligned_cols=95  Identities=18%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhh----Hhhh---hcCCCeEEEE-ccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQ----LLDH---FKNLGVNLVI-GDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~----~~~~---~~~~~v~~~~-~D~~~~~~~~~~~   74 (157)
                      |||.|+|| |++|+.++..|+.++  .++..++..     +.+.+    .+.+   +.+....... .|+   +    .+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~-----~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~---~----~~   67 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIA-----EDLAVGEAMDLAHAAAGIDKYPKIVGGADY---S----LL   67 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSS-----HHHHHHHHHHHHHHHGGGTCCCEEEEESCG---G----GG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCC-----CCcchhhhhhhhcccccCCCCCeEecCCCH---H----Hh
Confidence            58999995 999999999998887  378888876     33322    1221   1122233332 233   2    36


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +++|+||-.||...             ....+.+.+.+.+......++.+|
T Consensus        68 ~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs  118 (294)
T 2x0j_A           68 KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             TTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            79999999999876             233566777777765223344443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.59  E-value=0.00012  Score=54.90  Aligned_cols=33  Identities=21%  Similarity=0.158  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~   37 (157)
                      +|+|.|+| .|.+|..+++.|.+.|+ +|++.+|+
T Consensus        24 ~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            57999999 69999999999999999 99999986

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.58  E-value=9.2e-05  Score=54.03  Aligned_cols=67  Identities=18%  Similarity=0.319  Sum_probs=49.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      +++|+|+ |..|++++..|.+.|. +|++.+|+     +++++.+.+.    +...     ..+++.+.+.++|+||+..
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~-----~~ka~~la~~----~~~~-----~~~~~~~~~~~aDiVInat  174 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRT-----IERAKALDFP----VKIF-----SLDQLDEVVKKAKSLFNTT  174 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESC-----HHHHHTCCSS----CEEE-----EGGGHHHHHHTCSEEEECS
T ss_pred             eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHH----cccC-----CHHHHHhhhcCCCEEEECC
Confidence            7999995 9999999999999997 89999998     6666544322    1111     2244666778899999977


Q ss_pred             CCc
Q 040431           85 GHT   87 (157)
Q Consensus        85 ~~~   87 (157)
                      +..
T Consensus       175 p~g  177 (253)
T 3u62_A          175 SVG  177 (253)
T ss_dssp             STT
T ss_pred             CCC
Confidence            543

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.58  E-value=0.00031  Score=53.95  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=56.7

Q ss_pred             CeEEEEcCCCcchHHHHH-HHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVE-ASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~-~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |+|.|.||||++|+.|++ .|.++.+   ++..++.++.+.   +.   .++....+.+  -|..++++    +.++|+|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~---~~---~~~~~~~~~~--~~~~~~~~----~~~~Dvv   68 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV---PA---PNFGKDAGML--HDAFDIES----LKQLDAV   68 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS---BC---CCSSSCCCBC--EETTCHHH----HTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCc---CH---HHhCCCceEE--EecCChhH----hccCCEE
Confidence            489999999999999999 6666553   555554432221   11   1111111212  12333333    4689999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCC-ccEEEecc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGA-SRGTLRTQ  113 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~-~~~v~~Ss  113 (157)
                      |.+++...   +..+...+.+.| . .++|-.|+
T Consensus        69 f~a~~~~~---s~~~~~~~~~~G-~k~~VID~ss   98 (370)
T 3pzr_A           69 ITCQGGSY---TEKVYPALRQAG-WKGYWIDAAS   98 (370)
T ss_dssp             EECSCHHH---HHHHHHHHHHTT-CCCEEEECSS
T ss_pred             EECCChHH---HHHHHHHHHHCC-CCEEEEeCCc
Confidence            99988753   667777777777 4 35666665

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.57  E-value=0.00012  Score=55.68  Aligned_cols=96  Identities=19%  Similarity=0.142  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh-HHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH-ESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~~~~~~d~vv~   82 (157)
                      ..+|+|+|+ |.+|...++.+...|.+|++++++     +++.+.++++...   . ..|..+. +..+++..++|+||+
T Consensus       180 g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~-----~~~~~~~~~lGa~---~-v~~~~~~~~~~~~~~~~~D~vid  249 (360)
T 1piw_A          180 GKKVGIVGL-GGIGSMGTLISKAMGAETYVISRS-----SRKREDAMKMGAD---H-YIATLEEGDWGEKYFDTFDLIVV  249 (360)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESS-----STTHHHHHHHTCS---E-EEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHcCCC---E-EEcCcCchHHHHHhhcCCCEEEE
Confidence            468999999 999999999998889999999988     6666655554321   1 2344443 333333357999999


Q ss_pred             cCCC--cchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           83 TVGH--TLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        83 ~a~~--~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|.  ..  .....++.++..   ++++.++..
T Consensus       250 ~~g~~~~~--~~~~~~~~l~~~---G~iv~~g~~  278 (360)
T 1piw_A          250 CASSLTDI--DFNIMPKAMKVG---GRIVSISIP  278 (360)
T ss_dssp             CCSCSTTC--CTTTGGGGEEEE---EEEEECCCC
T ss_pred             CCCCCcHH--HHHHHHHHhcCC---CEEEEecCC
Confidence            9987  22  112233333332   477777653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.56  E-value=0.00036  Score=52.36  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~   37 (157)
                      .++|.|+| .|.+|..+++.|.+.|+  +|++.+|+
T Consensus        33 ~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           33 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             CSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            37899999 79999999999999999  89999888

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.56  E-value=3.6e-05  Score=60.91  Aligned_cols=43  Identities=26%  Similarity=0.258  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHh
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      |+++|+|.|+| +|++|..++..|.+.  |++|++++|+     +++.+.+
T Consensus         2 M~~~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~~~d~~-----~~~~~~l   46 (467)
T 2q3e_A            2 MFEIKKICCIG-AGYVGGPTCSVIAHMCPEIRVTVVDVN-----ESRINAW   46 (467)
T ss_dssp             CCCCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSC-----HHHHHHH
T ss_pred             CCCccEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECC-----HHHHHHH
Confidence            65568999999 699999999999999  7999999988     5555544

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.56  E-value=6.8e-05  Score=57.23  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC-----CCeEEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN-----LGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      |++|.|+|+ |.+|.+++..|.+.|++|++++|+     +++.+.+.+...     .+..+ ...+.-..+..++++++|
T Consensus        15 M~kI~iIG~-G~mG~~la~~L~~~G~~V~~~~r~-----~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~aD   87 (366)
T 1evy_A           15 LNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMN-----EEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAE   87 (366)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHTTTEEEEEEECSC-----HHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHcCccccccccccc-ccceeeeCCHHHHHcCCC
Confidence            338999995 999999999999999999999988     555554433210     01100 000100112345567899


Q ss_pred             EEEEcCCCc
Q 040431           79 VVISTVGHT   87 (157)
Q Consensus        79 ~vv~~a~~~   87 (157)
                      +||.+....
T Consensus        88 vVilav~~~   96 (366)
T 1evy_A           88 IILFVIPTQ   96 (366)
T ss_dssp             SEEECCCHH
T ss_pred             EEEECCChH
Confidence            999887653

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=97.56  E-value=0.00049  Score=53.39  Aligned_cols=102  Identities=14%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCe-----E-EE---EccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGV-----N-LV---IGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v-----~-~~---~~D~~~~~~~~~~~~   75 (157)
                      |+|.|.|+ |++|..++..|.+ |++|++++|+     +++.+.+..... .+     . ++   ...+.-..+..+.++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~~V~~~d~~-----~~~~~~l~~~~~-~i~e~~l~~~~~~~~~~l~~t~~~~~~~~   72 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QNEVTIVDIL-----PSKVDKINNGLS-PIQDEYIEYYLKSKQLSIKATLDSKAAYK   72 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TSEEEEECSC-----HHHHHHHHTTCC-SSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CCEEEEEECC-----HHHHHHHHcCCC-CcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence            48999995 9999999999999 9999999988     666554432211 00     0 00   000100112334456


Q ss_pred             CcCEEEEcCCCcc--------hHHHHHHHHHHHHhcCCccEEEe-cccc
Q 040431           76 QVDVVISTVGHTL--------LADQVKIIAAIKEAEGASRGTLR-TQKG  115 (157)
Q Consensus        76 ~~d~vv~~a~~~~--------~~~~~~l~~~~~~~~~~~~~v~~-Ss~~  115 (157)
                      ++|+||-+.....        ......+++.+...+ ...+|.. |+..
T Consensus        73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~-~~~iVV~~ST~~  120 (402)
T 1dlj_A           73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVN-SHATLIIKSTIP  120 (402)
T ss_dssp             HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHC-SSCEEEECSCCC
T ss_pred             CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhC-CCCEEEEeCCCC
Confidence            7899998887752        113444555444333 3445444 5544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.55  E-value=0.00081  Score=50.21  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=58.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHh-hhhcC-----CCeEEEEccCCChHHHHHHhcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLL-DHFKN-----LGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-~~~~~-----~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      |||.|+|| |.+|..++..|+..|+  +|++++++     +++++.. .+..+     ....+..   .+.    +.+++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~-----~~~~~~~~~~l~~~~~~~~~~~i~~---~~~----~a~~~   67 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRD-----EDRAQAEAEDIAHAAPVSHGTRVWH---GGH----SELAD   67 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSS-----HHHHHHHHHHHTTSCCTTSCCEEEE---ECG----GGGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCC-----HHHHHHHHHhhhhhhhhcCCeEEEE---CCH----HHhCC
Confidence            48999997 9999999999999998  89999987     4443321 11111     1222322   122    34789


Q ss_pred             cCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           77 VDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +|+||..++...             ....+.+++.+.+......++.+|
T Consensus        68 aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t  116 (304)
T 2v6b_A           68 AQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS  116 (304)
T ss_dssp             CSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred             CCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            999999997653             222456666666664123444443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.55  E-value=0.00021  Score=55.97  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCC----CeE-EE---EccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL----GVN-LV---IGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~----~v~-~~---~~D~~~~~~~~~~~~   75 (157)
                      +|+|.|.| +|++|..++..|.+ |++|++++++     +++++.+.....+    ++. .+   ...+.-..++.++++
T Consensus        36 ~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~~-----~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           36 FMKITISG-TGYVGLSNGVLIAQ-NHEVVALDIV-----QAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECSC-----HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEecC-----HHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            57999999 69999999999988 9999999998     6666555432110    000 00   001111123445677


Q ss_pred             CcCEEEEcCCCc
Q 040431           76 QVDVVISTVGHT   87 (157)
Q Consensus        76 ~~d~vv~~a~~~   87 (157)
                      ++|+||-+....
T Consensus       109 ~aDvViiaVPt~  120 (432)
T 3pid_A          109 NADYVIIATPTD  120 (432)
T ss_dssp             TCSEEEECCCCE
T ss_pred             CCCEEEEeCCCc
Confidence            899998877654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=97.55  E-value=2.7e-05  Score=58.34  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh-cCcCEEEEcC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI-KQVDVVISTV   84 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~-~~~d~vv~~a   84 (157)
                      +|+|+||+|.+|...++.+...|.+|++++++     +++.+.++++... .   ..|..+.+.+.++. .++|++|+++
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~-----~~~~~~~~~lGa~-~---vi~~~~~~~~~~~~~~~~d~v~d~~  219 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGR-----ESTHGYLKSLGAN-R---ILSRDEFAESRPLEKQLWAGAIDTV  219 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESC-----GGGHHHHHHHTCS-E---EEEGGGSSCCCSSCCCCEEEEEESS
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHhcCCC-E---EEecCCHHHHHhhcCCCccEEEECC
Confidence            49999999999999999999999999999988     6777766665322 1   12333322211111 2689999998


Q ss_pred             CCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           85 GHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |..   .....++.+..   .++++.++...
T Consensus       220 g~~---~~~~~~~~l~~---~G~iv~~G~~~  244 (324)
T 3nx4_A          220 GDK---VLAKVLAQMNY---GGCVAACGLAG  244 (324)
T ss_dssp             CHH---HHHHHHHTEEE---EEEEEECCCTT
T ss_pred             CcH---HHHHHHHHHhc---CCEEEEEecCC
Confidence            853   23333333333   25788876543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.54  E-value=0.00042  Score=52.06  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCC----CcEEEEecC
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAG----HPTFVLVRE   37 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g----~~v~~~~r~   37 (157)
                      ++|+|.|+|+ |.+|.+++..|.+.|    ++|++.+|+
T Consensus        21 ~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           21 QSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             -CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            3678999995 999999999999999    899999887

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.54  E-value=0.00067  Score=50.86  Aligned_cols=95  Identities=15%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHh-hhhcC-----CCeEEEEccCCChHHHHHHhcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLL-DHFKN-----LGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~-~~~~~-----~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      |||.|+|| |.+|++++..|+..+  .++++++++     +++++-. .++.+     .++.+.. +  +.    +.+++
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~-----~~k~~g~a~dl~~~~~~~~~~~v~~-~--~~----~a~~~   67 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLD-----RKLAQAHAEDILHATPFAHPVWVWA-G--SY----GDLEG   67 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSS-----HHHHHHHHHHHHTTGGGSCCCEEEE-C--CG----GGGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCC-----hhHHHHHHHHHHHhHhhcCCeEEEE-C--CH----HHhCC
Confidence            58999997 999999999999887  589999887     4444321 11111     2334443 2  22    34789


Q ss_pred             cCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           77 VDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +|+||..++...             ....+.+++.+.+......++.+|
T Consensus        68 aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  116 (310)
T 2xxj_A           68 ARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT  116 (310)
T ss_dssp             EEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            999999998865             233555666666665234555553

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.54  E-value=0.00027  Score=52.78  Aligned_cols=33  Identities=36%  Similarity=0.502  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      +|+|.|.| .|.+|+.++..|.+.|++|++.+|+
T Consensus        30 ~~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~   62 (316)
T 2uyy_A           30 DKKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRT   62 (316)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47899999 5999999999999999999999887

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.53  E-value=7.4e-05  Score=55.66  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=34.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +|+|.|+| .|.+|..+++.|.+.|++|++.+|+     +++.+.+
T Consensus         7 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~-----~~~~~~~   46 (303)
T 3g0o_A            7 DFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLN-----PQACANL   46 (303)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHH
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECC-----HHHHHHH
Confidence            47899998 6999999999999999999999988     5555443

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.53  E-value=0.00077  Score=51.54  Aligned_cols=97  Identities=13%  Similarity=0.084  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhc-CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIK-QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~-~~d~   79 (157)
                      ..+|+|+||+|.+|...++.+...|.+|+++. +     +++.+.++++..   . ...|..+.+   .+.++.. ++|+
T Consensus       165 g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~-----~~~~~~~~~lGa---~-~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          165 PVYVLVYGGSTATATVTMQMLRLSGYIPIATC-S-----PHNFDLAKSRGA---E-EVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-C-----GGGHHHHHHTTC---S-EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-C-----HHHHHHHHHcCC---c-EEEECCCchHHHHHHHHccCCccE
Confidence            35899999999999999999999999988775 4     556665555532   1 123444433   2333332 5999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|+++|...  .....++.+...  .++++.++..
T Consensus       235 v~d~~g~~~--~~~~~~~~l~~~--~G~iv~~g~~  265 (371)
T 3gqv_A          235 ALDCITNVE--STTFCFAAIGRA--GGHYVSLNPF  265 (371)
T ss_dssp             EEESSCSHH--HHHHHHHHSCTT--CEEEEESSCC
T ss_pred             EEECCCchH--HHHHHHHHhhcC--CCEEEEEecC
Confidence            999999742  122333333222  3588887743

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.53  E-value=0.00027  Score=46.80  Aligned_cols=85  Identities=16%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CCeEEEEcCC---CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGT---GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGat---G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++|.|.|+|   |.+|..+++.|.+.|++|+.++.+.     +..        .++.       -..++.++...+|++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~-----~~i--------~G~~-------~~~s~~el~~~vDlv   73 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY-----DEI--------EGLK-------CYRSVRELPKDVDVI   73 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC-----SEE--------TTEE-------CBSSGGGSCTTCCEE
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC-----CeE--------CCee-------ecCCHHHhCCCCCEE
Confidence            5789999987   8899999999999999977665441     110        0111       111122223357877


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      +-+...   .....+++.+.+.| ++.++..+
T Consensus        74 ii~vp~---~~v~~v~~~~~~~g-~~~i~~~~  101 (138)
T 1y81_A           74 VFVVPP---KVGLQVAKEAVEAG-FKKLWFQP  101 (138)
T ss_dssp             EECSCH---HHHHHHHHHHHHTT-CCEEEECT
T ss_pred             EEEeCH---HHHHHHHHHHHHcC-CCEEEEcC
Confidence            776663   34555666666666 55555444

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.52  E-value=0.00013  Score=55.25  Aligned_cols=96  Identities=9%  Similarity=0.104  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhc--CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIK--QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~--~~d   78 (157)
                      ..+|+|+|| |.+|...++.+...  |.+|++++++     +++.+.++++...   . ..|..+ ++.+.++-.  ++|
T Consensus       171 g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~-----~~~~~~~~~lGa~---~-vi~~~~~~~~~~~~~~g~g~D  240 (344)
T 2h6e_A          171 EPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRS-----KKHRDFALELGAD---Y-VSEMKDAESLINKLTDGLGAS  240 (344)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSC-----HHHHHHHHHHTCS---E-EECHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCC-----HHHHHHHHHhCCC---E-EeccccchHHHHHhhcCCCcc
Confidence            468999999 99999999999888  9999998887     6676666554321   1 134433 333434332  689


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +||+++|...  .....++.+...   ++++.++..
T Consensus       241 ~vid~~g~~~--~~~~~~~~l~~~---G~iv~~g~~  271 (344)
T 2h6e_A          241 IAIDLVGTEE--TTYNLGKLLAQE---GAIILVGME  271 (344)
T ss_dssp             EEEESSCCHH--HHHHHHHHEEEE---EEEEECCCC
T ss_pred             EEEECCCChH--HHHHHHHHhhcC---CEEEEeCCC
Confidence            9999998741  233344444333   478877653

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.52  E-value=0.00044  Score=54.90  Aligned_cols=42  Identities=19%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      |+ +++|.|+| .|.+|+.++..|.+.|++|++.+|+     +++.+.+
T Consensus        13 ~~-~~~IgvIG-lG~MG~~lA~~La~~G~~V~v~~r~-----~~~~~~l   54 (480)
T 2zyd_A           13 MS-KQQIGVVG-MAVMGRNLALNIESRGYTVSIFNRS-----REKTEEV   54 (480)
T ss_dssp             ---CBSEEEEC-CSHHHHHHHHHHHTTTCCEEEECSS-----HHHHHHH
T ss_pred             cC-CCeEEEEc-cHHHHHHHHHHHHhCCCeEEEEeCC-----HHHHHHH
Confidence            44 77899999 5999999999999999999999988     5555443

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.52  E-value=0.00023  Score=54.07  Aligned_cols=93  Identities=18%  Similarity=0.310  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCcchHHH-HHHH-HhCCCc-EEEEecCCCCCCCc---hhhHhhhhcCCCeEEEEccCCCh--HHHHHHhc-
Q 040431            5 SKILFIGGTGYIGKFT-VEAS-VKAGHP-TFVLVRESTISGPS---KSQLLDHFKNLGVNLVIGDVLNH--ESLVKAIK-   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l-~~~l-~~~g~~-v~~~~r~~~~~~~~---~~~~~~~~~~~~v~~~~~D~~~~--~~~~~~~~-   75 (157)
                      .+|+|+|| |.+|... ++.+ ...|.+ |++++++     ++   +.+.++++   +...+  |..+.  .++.++ . 
T Consensus       174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~-----~~~~~~~~~~~~l---Ga~~v--~~~~~~~~~i~~~-~g  241 (357)
T 2b5w_A          174 SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRR-----DRPDPTIDIIEEL---DATYV--DSRQTPVEDVPDV-YE  241 (357)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECC-----CSSCHHHHHHHHT---TCEEE--ETTTSCGGGHHHH-SC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCC-----cccHHHHHHHHHc---CCccc--CCCccCHHHHHHh-CC
Confidence            78999999 9999999 8877 677987 9999987     55   66665544   23444  55432  224444 3 


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|++|+++|...  .....++.++..   ++++.++..
T Consensus       242 g~Dvvid~~g~~~--~~~~~~~~l~~~---G~iv~~g~~  275 (357)
T 2b5w_A          242 QMDFIYEATGFPK--HAIQSVQALAPN---GVGALLGVP  275 (357)
T ss_dssp             CEEEEEECSCCHH--HHHHHHHHEEEE---EEEEECCCC
T ss_pred             CCCEEEECCCChH--HHHHHHHHHhcC---CEEEEEeCC
Confidence            5899999998631  123344444333   478887654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.52  E-value=0.0003  Score=53.48  Aligned_cols=96  Identities=16%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ..+|+|+|+ |.+|...++.+...|.+|++++++     +++.+.+. ++....    ..|..+.+.+.++..++|++|+
T Consensus       181 g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~-----~~~~~~~~~~lGa~~----vi~~~~~~~~~~~~~g~D~vid  250 (357)
T 2cf5_A          181 GLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSS-----NKKREEALQDLGADD----YVIGSDQAKMSELADSLDYVID  250 (357)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESS-----TTHHHHHHTTSCCSC----EEETTCHHHHHHSTTTEEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCC-----hHHHHHHHHHcCCce----eeccccHHHHHHhcCCCCEEEE
Confidence            468999995 999999999988889999999988     66655544 332211    2355566666666668999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|...  .....++.+...   ++++.++..
T Consensus       251 ~~g~~~--~~~~~~~~l~~~---G~iv~~G~~  277 (357)
T 2cf5_A          251 TVPVHH--ALEPYLSLLKLD---GKLILMGVI  277 (357)
T ss_dssp             CCCSCC--CSHHHHTTEEEE---EEEEECSCC
T ss_pred             CCCChH--HHHHHHHHhccC---CEEEEeCCC
Confidence            998642  012233333332   477777653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.51  E-value=0.00034  Score=53.55  Aligned_cols=96  Identities=22%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      ..+|+|+|+ |.+|...++.+...|. +|++++++     +++.+..+++...    ...|..+.+..+.+.+       
T Consensus       183 g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~-----~~~~~~a~~lGa~----~vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          183 GSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQ-----ATKRRLAEEVGAT----ATVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC-----HHHHHHHHHHTCS----EEECTTSSCHHHHHHSTTSSSTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCC----EEECCCCcCHHHHHHhhhhccCC
Confidence            468999997 9999999999999998 78887777     6666666555321    1235544443333332       


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++|+||+++|...  .....++.+...   ++++.++..
T Consensus       253 g~Dvvid~~G~~~--~~~~~~~~l~~~---G~vv~~G~~  286 (370)
T 4ej6_A          253 GVDVVIECAGVAE--TVKQSTRLAKAG---GTVVILGVL  286 (370)
T ss_dssp             CEEEEEECSCCHH--HHHHHHHHEEEE---EEEEECSCC
T ss_pred             CCCEEEECCCCHH--HHHHHHHHhccC---CEEEEEecc
Confidence            5899999998632  223344444332   578887654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.51  E-value=0.00041  Score=51.61  Aligned_cols=91  Identities=15%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |.+|+.+++.|...|.+|++.+|+     +++.+.+.+.   ++..+     +.+++.++++++|+|+..
T Consensus       157 g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~-----~~~~~~~~~~---g~~~~-----~~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          157 GSQVAVLGL-GRTGMTIARTFAALGANVKVGARS-----SAHLARITEM---GLVPF-----HTDELKEHVKDIDICINT  222 (300)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHT---TCEEE-----EGGGHHHHSTTCSEEEEC
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHC---CCeEE-----chhhHHHHhhCCCEEEEC
Confidence            578999995 999999999999999999999988     5444333322   23322     234577788899999999


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .+...+.  ...+..++.   ...++.++.
T Consensus       223 ~p~~~i~--~~~~~~mk~---g~~lin~a~  247 (300)
T 2rir_A          223 IPSMILN--QTVLSSMTP---KTLILDLAS  247 (300)
T ss_dssp             CSSCCBC--HHHHTTSCT---TCEEEECSS
T ss_pred             CChhhhC--HHHHHhCCC---CCEEEEEeC
Confidence            8874332  122222221   245777765

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.51  E-value=0.00041  Score=52.00  Aligned_cols=86  Identities=17%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEec--CCCCCCCchhhHhhhhcC-C--CeEEEEccCCChHHHHHHhcCcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVR--ESTISGPSKSQLLDHFKN-L--GVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r--~~~~~~~~~~~~~~~~~~-~--~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |+|.|.|+ |.+|+.++..|.+.|++|++++|  +     +++.+.+.+... .  ++........+++++.+.++++|+
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD-----TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV   74 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG-----HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEEccCC-----HHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence            47999995 99999999999999999999998  6     555544432210 0  111000012233355566788999


Q ss_pred             EEEcCCCcchHHHHHHHHHH
Q 040431           80 VISTVGHTLLADQVKIIAAI   99 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~   99 (157)
                      ||.+.....   ...+++.+
T Consensus        75 vi~~v~~~~---~~~v~~~i   91 (335)
T 1txg_A           75 VLLGVSTDG---VLPVMSRI   91 (335)
T ss_dssp             EEECSCGGG---HHHHHHHH
T ss_pred             EEEcCChHH---HHHHHHHH
Confidence            999887764   34444444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.51  E-value=0.00025  Score=54.59  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccC------------------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV------------------L   65 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~------------------~   65 (157)
                      ..+|+|+|+ |-+|...++.+...|.+|++++|+     +++.+.+.+.   +.+++..|.                  .
T Consensus       184 ~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~-----~~~l~~~~~l---Ga~~~~l~~~~~~~~gya~~~~~~~~~~  254 (381)
T 3p2y_A          184 PASALVLGV-GVAGLQALATAKRLGAKTTGYDVR-----PEVAEQVRSV---GAQWLDLGIDAAGEGGYARELSEAERAQ  254 (381)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSS-----GGGHHHHHHT---TCEECCCC-------------CHHHHHH
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHc---CCeEEeccccccccccchhhhhHHHHhh
Confidence            468999996 999999999999999999999998     6666555443   233333221                  1


Q ss_pred             ChHHHHHHhcCcCEEEEcCCCcc----hHHHHHHHHHHHHhcCCccEEEecc
Q 040431           66 NHESLVKAIKQVDVVISTVGHTL----LADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        66 ~~~~~~~~~~~~d~vv~~a~~~~----~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +.+.+.+.++++|+||..+....    .-.+..+++.++.   ..-+|-++.
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~Mkp---GsVIVDvA~  303 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQP---GSVVVDLAG  303 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCT---TCEEEETTG
T ss_pred             hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCC---CcEEEEEeC
Confidence            34567788899999998864332    1123455555543   235666654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.50  E-value=0.00036  Score=52.87  Aligned_cols=97  Identities=15%  Similarity=0.062  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhH----hhhh--cCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQL----LDHF--KNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~----~~~~--~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .+||.|+|+ |.+|..++..|+..|.  ++++++++     .++++-    +.+.  .......+..  .|.+    .++
T Consensus        19 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~-----~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~----~~~   86 (331)
T 4aj2_A           19 QNKITVVGV-GAVGMACAISILMKDLADELALVDVI-----EDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS----VTA   86 (331)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC-----HHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG----GGT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCC-----hHHHHHHHHhhhhhhhccCCCeEEEc--CCHH----HhC
Confidence            579999997 9999999999999886  79998887     444432    2211  1111222222  1322    378


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      ++|+||..||...             ....+.+.+.+.+......++.+|
T Consensus        87 ~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt  136 (331)
T 4aj2_A           87 NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS  136 (331)
T ss_dssp             TEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999999999865             233556666776665234555544

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.49  E-value=0.00011  Score=53.29  Aligned_cols=81  Identities=25%  Similarity=0.373  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEE-EecCCCCCCC-chhhHhhhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFV-LVRESTISGP-SKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~-~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      |+ |++|.|+|+ |.+|+.+++.+.+.+.+++. ++++...... .....+.+..  +.++ ..|++.++.+.+.++   
T Consensus         1 M~-MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~--~~DV-vIDft~p~a~~~~~~l~~   75 (243)
T 3qy9_A            1 MA-SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK--GADV-AIDFSNPNLLFPLLDEDF   75 (243)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT--TCSE-EEECSCHHHHHHHHTSCC
T ss_pred             CC-ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh--CCCE-EEEeCChHHHHHHHHHhc
Confidence            65 789999999 99999999999998777664 4554321000 0000111111  2222 357777777655543   


Q ss_pred             CcCEEEEcCCC
Q 040431           76 QVDVVISTVGH   86 (157)
Q Consensus        76 ~~d~vv~~a~~   86 (157)
                      +.++|+...|.
T Consensus        76 g~~vVigTTG~   86 (243)
T 3qy9_A           76 HLPLVVATTGE   86 (243)
T ss_dssp             CCCEEECCCSS
T ss_pred             CCceEeCCCCC
Confidence            56777777765

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.49  E-value=0.00018  Score=53.30  Aligned_cols=67  Identities=15%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++++|+|+ |..|++++..|.+.|. +|++++|+     .++++.+.+.    +..+     ..+++.+ + ++|+|||
T Consensus       122 ~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt-----~~ka~~La~~----~~~~-----~~~~l~~-l-~~DivIn  184 (282)
T 3fbt_A          122 NNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRN-----PEKTSEIYGE----FKVI-----SYDELSN-L-KGDVIIN  184 (282)
T ss_dssp             TSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHCTT----SEEE-----EHHHHTT-C-CCSEEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHh----cCcc-----cHHHHHh-c-cCCEEEE
Confidence            578999996 8899999999999997 89999998     6666555332    2221     1233334 4 7899999


Q ss_pred             cCCCc
Q 040431           83 TVGHT   87 (157)
Q Consensus        83 ~a~~~   87 (157)
                      ..+..
T Consensus       185 aTp~G  189 (282)
T 3fbt_A          185 CTPKG  189 (282)
T ss_dssp             CSSTT
T ss_pred             CCccC
Confidence            87653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.49  E-value=0.00011  Score=54.18  Aligned_cols=70  Identities=26%  Similarity=0.330  Sum_probs=50.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|+ |.+|++++..|.+.|.+|++.+|+     +++.+.+.+..  ++..  .+     ++.+.++++|+||++
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~-----~~~~~~l~~~~--g~~~--~~-----~~~~~~~~aDiVi~a  193 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKEGAKVFLWNRT-----KEKAIKLAQKF--PLEV--VN-----SPEEVIDKVQVIVNT  193 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSS-----HHHHHHHTTTS--CEEE--CS-----CGGGTGGGCSEEEEC
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHHHc--CCee--eh-----hHHhhhcCCCEEEEe
Confidence            478999995 899999999999999999999888     66655443222  2221  11     233456789999998


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      .+...
T Consensus       194 tp~~~  198 (275)
T 2hk9_A          194 TSVGL  198 (275)
T ss_dssp             SSTTS
T ss_pred             CCCCC
Confidence            88764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-15
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	5e-15
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	2e-13
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	3e-09
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	6e-09
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	2e-08
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	4e-08
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	5e-08
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	8e-08
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	4e-07
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	4e-07
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	4e-07
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	4e-07
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	5e-07
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	8e-07
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	1e-06
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	2e-06
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	2e-06
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	3e-06
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	4e-06
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	5e-06
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	6e-06
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	5e-05
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	4e-04
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	6e-04
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	0.001
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	0.001
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.002
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	0.003

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 69.8 bits (169), Expect = 1e-15
 Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 1/101 (0%)

Query: 3   SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST-ISGPSKSQLLDHFKNLGVNLVI 61
           S+S+IL IG TGYIG+   +AS+  GHPTF+LVREST  S   K+QLL+ FK  G N+V 
Sbjct: 2   SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVH 61

Query: 62  GDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
           G + +H SLV+A+K VDVVISTVG   +  QV II AIKE 
Sbjct: 62  GSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEV 102

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 68.6 bits (166), Expect = 5e-15
 Identities = 42/83 (50%), Positives = 56/83 (67%)

Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          KS++L +GGTGYIGK  V AS+  GHPT+VL R   +S   K Q+L +FK LG  L+   
Sbjct: 3  KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEAS 62

Query: 64 VLNHESLVKAIKQVDVVISTVGH 86
          + +H+ LV A+KQVDVVIS +  
Sbjct: 63 LDDHQRLVDALKQVDVVISALAG 85

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 64.3 bits (155), Expect = 2e-13
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 4   KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
           K  I  +G TG  G   +  +   GH     V              +      V L  G 
Sbjct: 3   KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLKGLIAEELQAIPNVTLFQGP 57

Query: 64  VLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA 102
           +LN+  L+  + +   +      +   D++ I   + +A
Sbjct: 58  LLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADA 96

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          KIL  GG G+IG   V   +K    T V + + T +G +   L D  ++   N    D+ 
Sbjct: 2  KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAG-NLESLSDISESNRYNFEHADIC 60

Query: 66 NHESLVKAIK--QVDVVI 81
          +   + +  +  Q D V+
Sbjct: 61 DSAEITRIFEQYQPDAVM 78

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 51.1 bits (121), Expect = 6e-09
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 23/143 (16%)

Query: 6   KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           ++L  GG+GYIG  T    ++ GH   +L      S  S   +++         V GD+ 
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN-SKRSVLPVIERLGGKHPTFVEGDIR 60

Query: 66  NHESLVKAIK--QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE 123
           N   + + +    +D VI    H          A +K           + +  +    + 
Sbjct: 61  NEALMTEILHDHAIDTVI----HF---------AGLK-------AVGESVQKPLEYYDNN 100

Query: 124 MTTTLDMLEMTELIDQKIFIYFW 146
           +  TL ++      + K FI+  
Sbjct: 101 VNGTLRLISAMRAANVKNFIFSS 123

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
          MA K KI   G TG  G  T+  +V+AG+   VLVR         S  L        ++V
Sbjct: 1  MAVK-KIAIFGATGQTGLTTLAQAVQAGYEVTVLVR--------DSSRLPSEGPRPAHVV 51

Query: 61 IGDVLNHESLVKAIKQVDVVISTVG 85
          +GDVL    + K +   D VI  +G
Sbjct: 52 VGDVLQAADVDKTVAGQDAVIVLLG 76

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           I+  GG G+IG   V           V V +      +K+  L+      V LV+GD+ 
Sbjct: 4  NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN-LEAILGDRVELVVGDIA 62

Query: 66 NHESLVKA 73
          + E + K 
Sbjct: 63 DAELVDKL 70

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 48.6 bits (114), Expect = 5e-08
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          K+L  GG G++G      ++  G    V    S          L    N     V GD+ 
Sbjct: 2  KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGN--FEFVHGDIR 59

Query: 66 NHESLVKAIK--QVDVVI 81
          N   + + I     D   
Sbjct: 60 NKNDVTRLITKYMPDSCF 77

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 47.9 bits (112), Expect = 8e-08
 Identities = 11/66 (16%), Positives = 25/66 (37%)

Query: 5  SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV 64
          S +L  G  G++    VE  ++ G+      R ++     + +    +       V+ D+
Sbjct: 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDM 71

Query: 65 LNHESL 70
          L   + 
Sbjct: 72 LKQGAY 77

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 5  SK-ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          SK +L  GG GYIG  TV   ++ G+   V    S  S       L+      +     D
Sbjct: 1  SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN-STYDSVARLEVLTKHHIPFYEVD 59

Query: 64 VLNHESLVKAIKQVDV 79
          + + + L K  K+  +
Sbjct: 60 LCDRKGLEKVFKEYKI 75

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
          + +IL  GG G++G    +  +  GH   V+    T    +    + H           +
Sbjct: 1  RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHEN--------FE 52

Query: 64 VLNHESLVKAIKQVDVVI 81
          ++NH+ +     +VD + 
Sbjct: 53 LINHDVVEPLYIEVDQIY 70

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (107), Expect = 4e-07
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          ++L +G  G+IG    E  ++  H     +   +        +     +   + V GD+ 
Sbjct: 2  RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS------DAISRFLNHPHFHFVEGDIS 55

Query: 66 NHESLVKAIKQ 76
           H   ++   +
Sbjct: 56 IHSEWIEYHVK 66

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTF----VLVRESTISGPSKSQLLDHFKNLGVNLVI 61
          ++L  GG G+IG   V   +   +P      V+V +S     +++ L     +  +  V 
Sbjct: 2  RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61

Query: 62 GDVLNHESLVKAIKQVDVVI 81
          GD+ +   L + ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 5  SKILFI-GGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL---DHFKNLGVNLV 60
          SK+  I G TG  G +  E  ++ G+    + R ++     +   +    H  N   +L 
Sbjct: 1  SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH 60

Query: 61 IGDVLNHESLVKAIKQVDV 79
           GD+ +  +L + +++V  
Sbjct: 61 YGDLSDTSNLTRILREVQP 79

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.1 bits (105), Expect = 8e-07
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK----SQLLDHFKNLGVNL 59
          +   L  G TG  G +  E  +  G+    L+R S+     +         +     + L
Sbjct: 1  RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKL 60

Query: 60 VIGDVLNHESLVKAIKQ 76
             D+ +  SL + I  
Sbjct: 61 HYADLTDASSLRRWIDV 77

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 8/80 (10%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
           +   KI   G  G+I           GH               K               
Sbjct: 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDW--------KKNEHMTEDMFCDEFH 63

Query: 61 IGDVLNHESLVKAIKQVDVV 80
          + D+   E+ +K  + VD V
Sbjct: 64 LVDLRVMENCLKVTEGVDHV 83

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL-GVNLVIGDV 64
          ++   G TG+ G +        G         +    P+   L +  +   G+   IGD+
Sbjct: 10 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA----PTVPSLFETARVADGMQSEIGDI 65

Query: 65 LNHESLVKAIKQ 76
           +   L+++I++
Sbjct: 66 RDQNKLLESIRE 77

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 3  SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI 61
          +K ++   G  G +G        + G    VL     ++      + D F +  ++ V 
Sbjct: 1  AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVY 59

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
            L  G TG  G +  +  ++ G+    LV     S  ++ +L +      +    GD+ 
Sbjct: 2  SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR--SSDTRWRLRELGIEGDIQYEDGDMA 59

Query: 66 NHESLVK 72
          +  S+ +
Sbjct: 60 DACSVQR 66

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.4 bits (100), Expect = 4e-06
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVREST---------------ISGPSKSQLLD 50
          +++ IGG GY G  T     K  +   ++                     S   +     
Sbjct: 3  RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62

Query: 51 HFKNLGVNLVIGDVLNHESLVKAIKQ 76
                + L +GD+ + E L ++ K 
Sbjct: 63 ALTGKSIELYVGDICDFEFLAESFKS 88

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 5e-06
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 4  KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST-----ISGPSKSQLLDHFKNLGVN 58
            K+L  GG GYIG  TV   ++AG+   V+           S P   + +       V 
Sbjct: 2  AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61

Query: 59 LVIGDVLNH 67
              D+L+ 
Sbjct: 62 FEEMDILDQ 70

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 42.6 bits (98), Expect = 6e-06
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 22/78 (28%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
           IL  G TG +G     +    G+   + V                          GD  
Sbjct: 2  NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEF--------------------CGDFS 41

Query: 66 NHESLVKAIKQV--DVVI 81
          N + + + ++++  DV++
Sbjct: 42 NPKGVAETVRKLRPDVIV 59

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 6  KILFI-GGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSK----SQLLDHFKNLGVNLV 60
           +  I G TG  G +  E  ++ G+    +VR S+     +     +         + L 
Sbjct: 2  NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61

Query: 61 IGDVLNHESLVKAIKQVD 78
           GD+ +   LVK I +V 
Sbjct: 62 YGDLTDSTCLVKIINEVK 79

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 1  MASKSK-ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS---KSQLLDHFKNLG 56
          + ++ K  L  G  G+IG   +E  +K       L   +T    +      L+   +   
Sbjct: 12 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSN 71

Query: 57 VNLVIGDVLNHESLVKAIKQVD 78
             + GD+ N +    A   VD
Sbjct: 72 FKFIQGDIRNLDDCNNACAGVD 93

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.3 bits (82), Expect = 6e-04
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 3  SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVR 36
          +  ++L  G TG  G+  ++  +       V+  
Sbjct: 1  TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAP 34

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 2  ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK 53
          A+   +L  G +G  G+   +   +       + +    S   K ++     
Sbjct: 1  ANLPTVLVTGASGRTGQIVYKKLKEGSDK--FVAKGLVRSAQGKEKIGGEAD 50

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 23/76 (30%)

Query: 6  KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
          KIL  G  G +G+   +              +                         D+ 
Sbjct: 3  KILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDIT 39

Query: 66 NHESLVKAIKQVDVVI 81
          N  ++ K   +    +
Sbjct: 40 NVLAVNKFFNEKKPNV 55

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 16/84 (19%)

Query: 3  SKSKILFIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPS---------------KS 46
          S  ++L  GG GYIG   V A ++   H   ++       G S                 
Sbjct: 1  SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60

Query: 47 QLLDHFKNLGVNLVIGDVLNHESL 70
               + +    L +GDV N + L
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFL 84

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 1  MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLV 35
          M +K  +  +G +G  G+  ++  ++ G  + V +
Sbjct: 12 MQNK-SVFILGASGETGRVLLKEILEQGLFSKVTL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.92
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.91
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.91
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.9
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.9
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.89
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.88
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.88
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.87
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.87
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.87
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.85
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.85
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.85
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.85
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.84
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.84
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.84
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.82
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.82
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.81
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.81
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.79
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.79
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.78
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.78
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.77
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.77
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.77
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.77
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.76
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.76
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.75
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.75
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.75
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.74
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.74
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.74
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.74
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.74
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.73
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.73
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.73
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.73
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.73
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.73
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.73
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.73
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.73
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.73
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.72
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.72
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.72
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.72
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.72
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.72
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.72
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.72
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.7
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.7
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.69
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.69
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.68
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.67
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.67
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.67
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.67
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.66
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.66
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.66
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.66
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.65
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.63
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.62
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.62
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.6
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.6
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.6
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.6
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.58
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.58
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.58
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.51
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.51
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.49
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.49
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.47
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.38
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.36
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.35
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.35
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.27
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.23
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	99.09
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.03
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	98.93
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	98.91
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.85
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.79
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.6
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.55
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.48
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	98.47
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.46
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.41
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.39
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.39
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.39
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.38
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.37
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.35
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.32
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.3
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.29
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.28
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.27
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.26
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.22
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.21
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.21
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.19
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.15
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.15
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.14
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.13
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.11
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.11
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.1
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.1
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.07
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	98.06
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.05
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.05
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.02
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.02
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.01
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	98.0
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.98
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.97
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.97
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.94
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.93
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.92
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.92
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.92
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.91
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.91
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.89
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.88
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.88
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.87
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.86
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.82
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.81
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.77
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.77
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.74
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.72
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.7
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.7
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.68
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.68
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.67
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.66
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.65
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.65
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.64
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.6
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.5
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.48
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.47
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.45
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.42
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.39
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.39
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.39
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.36
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.34
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.31
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.23
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.17
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.15
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.15
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.11
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.06
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	97.05
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.05
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.04
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.04
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.01
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.99
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.96
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.96
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.95
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.94
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.89
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.87
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.87
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.86
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.83
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.82
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.78
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.75
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.74
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.73
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.72
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.68
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	96.68
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.68
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.67
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.66
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.65
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.63
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.63
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.62
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.61
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.6
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.59
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	96.57
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.57
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.53
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.53
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.51
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.47
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.46
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.46
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.43
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.43
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.42
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.39
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.38
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.37
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.36
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.33
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.28
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.28
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.22
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.21
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	96.2
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	96.19
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.15
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.06
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.06
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	96.05
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.01
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.99
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.96
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.96
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.95
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.94
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.92
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.92
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.88
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.88
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.87
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	95.85
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.78
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.71
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.68
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	95.64
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.64
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.53
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	95.49
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.47
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.46
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	95.44
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.43
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.41
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.38
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.36
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.34
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.27
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.24
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.23
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.15
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.93
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	94.92
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	94.91
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.66
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.62
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	94.6
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.56
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.43
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	94.42
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.4
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.35
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.35
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	94.26
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.23
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	94.09
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	94.07
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.05
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.02
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	94.0
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.9
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.85
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	93.83
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.74
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	93.65
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	93.49
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.45
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.37
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	93.26
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.26
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	93.18
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	92.84
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.66
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.58
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	92.55
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.42
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.24
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.22
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.19
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.02
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.96
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	91.68
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	91.48
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	91.3
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	91.27
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	91.26
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.24
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.19
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	91.18
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.05
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.74
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	90.48
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	90.42
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.32
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.28
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.16
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.99
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.66
d1qkia1	203	Glucose 6-phosphate dehydrogenase, N-terminal doma	89.54
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.37
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.25
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	89.22
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.18
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	89.13
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	88.99
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.92
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	88.81
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.77
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	88.71
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	88.71
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	88.68
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	88.65
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.48
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.07
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.03
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	88.02
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	87.59
d3bula2	156	Methionine synthase, C-terminal domain {Escherichi	87.27
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.23
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.18
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.11
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.1
d2j9ga2	114	Biotin carboxylase (BC), N-terminal domain {Escher	86.88
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	86.88
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.84
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.54
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	86.49
d1h9aa1	195	Glucose 6-phosphate dehydrogenase, N-terminal doma	86.37
d1jzta_	243	Hypothetical protein YNL200c (YNU0_YEAST) {Baker's	86.34
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	86.32
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	86.31
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	86.27
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.26
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.09
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	85.89
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	85.88
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.77
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	85.73
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	85.56
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	85.36
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	85.09
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	85.03
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	84.92
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.77
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.72
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	84.21
d1rtta_	174	Hypothetical protein PA1204 {Pseudomonas aeruginos	83.97
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.88
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.77
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	83.59
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	83.47
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	83.24
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	83.14
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	82.89
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	82.85
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.75
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	82.39
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	82.3
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	81.97
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	81.95
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	81.93
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	81.86
d1t0ia_	185	Hypothetical protein Ylr011wp {Baker's yeast (Sacc	81.76
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	81.61
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	81.44
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	81.41
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	81.35
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.32
d1ulza2	114	Biotin carboxylase (BC), N-terminal domain {Aquife	81.18
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.16
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	80.92
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	80.83
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.63
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	80.36
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	80.14
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	80.06

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2e-24  Score=162.66  Aligned_cols=141  Identities=18%  Similarity=0.296  Sum_probs=115.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |||||||||||||++|++.|+++|++|++++|..... .............++.++++|++|.+.+.++++  ++|+|||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSK-RSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-TTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcc-hhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            5899999999999999999999999999998765443 333333344456789999999999999999998  7999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------CCccchhhHhHhhhhH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------TTTLDMLEMTELIDQK  140 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  140 (157)
                      +|+...               +.++.++++++++.+ ++++|++||..+|+..+...       ..+..+|..+|...+.
T Consensus        80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~-v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~  158 (338)
T d1udca_          80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQ  158 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHH
T ss_pred             CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhC-CCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhhH
Confidence            998754               667999999999998 89999999999986543221       3678899999999988


Q ss_pred             HHHHHHh
Q 040431          141 IFIYFWG  147 (157)
Q Consensus       141 ~~~~~~~  147 (157)
                      +...++.
T Consensus       159 ~~~~~~~  165 (338)
T d1udca_         159 ILTDLQK  165 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8665543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=148.01  Aligned_cols=130  Identities=26%  Similarity=0.288  Sum_probs=105.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |. |+||+||||||++|++++++|+++|++|++++|++.     +.   +.....+++++.+|++|++++.++++++|+|
T Consensus         1 m~-~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~-----~~---~~~~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           1 MA-VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS-----RL---PSEGPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CC-CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG-----GS---CSSSCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CC-CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh-----hc---ccccccccccccccccchhhHHHHhcCCCEE
Confidence            66 889999999999999999999999999999999843     32   2223467899999999999999999999999


Q ss_pred             EEcCCCcc--------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431           81 ISTVGHTL--------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        81 v~~a~~~~--------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      ||++|...        ..+++++++++++.+ ++|||++||.+.+.+.+.. +.....+...+...+++
T Consensus        72 i~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~-v~r~i~~ss~~~~~~~~~~-~~~~~~~~~~~~~~e~~  138 (205)
T d1hdoa_          72 IVLLGTRNDLSPTTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLWDPTKV-PPRLQAVTDDHIRMHKV  138 (205)
T ss_dssp             EECCCCTTCCSCCCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCTTCS-CGGGHHHHHHHHHHHHH
T ss_pred             EEEeccCCchhhhhhhHHHHHHHHHHHHhcC-CCeEEEEeeeeccCCCccc-cccccccchHHHHHHHH
Confidence            99998754        567889999999998 9999999998887654322 23344555556655555

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.1e-23  Score=156.46  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=114.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      +.|||||||||||++|+++|+++|++|+++++..... .............++.++++|+.|.+++.+++.  ++|+|||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNST-YDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-THHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcc-hhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            3599999999999999999999999999998754432 333333444456789999999999999999887  7999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC----------ccCCccchhhHhHhh
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS----------EMTTTLDMLEMTELI  137 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~----------~~~~~~~~~~~~~~~  137 (157)
                      +|+...               +.++.++++++++.+ +++|+++||..+|++.+.          ....|..+|+.+|.+
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~-i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~  159 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYA  159 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHH
T ss_pred             ccccccccccccCcccccccchhhhHHHHHHHHhcc-cceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHH
Confidence            999865               556889999999998 899999999999975421          113567889999999


Q ss_pred             hhHHHHHHHh
Q 040431          138 DQKIFIYFWG  147 (157)
Q Consensus       138 ~~~~~~~~~~  147 (157)
                      .|.+...+..
T Consensus       160 ~E~~~~~~~~  169 (347)
T d1z45a2         160 IENILNDLYN  169 (347)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988665543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.1e-23  Score=158.23  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=104.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh---hhcCCCeEEEEccCCChHHHHHHhc--CcCE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD---HFKNLGVNLVIGDVLNHESLVKAIK--QVDV   79 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~   79 (157)
                      +++||||||||||++|+++|++.|++|++++|..+..+..+++.+.   .....++.++++|++|.+++.++++  ++|+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE   81 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence            5788999999999999999999999999999976543344444332   2234689999999999999999998  5699


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCc------cCCccchhhHhHh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTEL  136 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~  136 (157)
                      |+|+|+...               +.++.++++++++.+  +..+|||+||..+|+..+..      ...|.++|+.+|.
T Consensus        82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK~  161 (357)
T d1db3a_          82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL  161 (357)
T ss_dssp             EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHHH
T ss_pred             EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHHH
Confidence            999998754               667999999999876  13469999999999653221      1356789999999


Q ss_pred             hhhHHHHHHH
Q 040431          137 IDQKIFIYFW  146 (157)
Q Consensus       137 ~~~~~~~~~~  146 (157)
                      +.|.+...+.
T Consensus       162 ~~E~~~~~~~  171 (357)
T d1db3a_         162 YAYWITVNYR  171 (357)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998855543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=6.9e-23  Score=155.21  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=111.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |++.|||||||||||||++|+++|+++|++|+++++.+......        ......+..+|+.+.+.+.++++++|.|
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~d~V   83 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE--------DMFCDEFHLVDLRVMENCLKVTEGVDHV   83 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG--------GGTCSEEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh--------hcccCcEEEeechhHHHHHHHhhcCCeE
Confidence            77789999999999999999999999999999998765432111        1235688899999999999999999999


Q ss_pred             EEcCCCcc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------------CCccchh
Q 040431           81 ISTVGHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------------TTTLDML  131 (157)
Q Consensus        81 v~~a~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------------~~~~~~~  131 (157)
                      ||+|+...                ..++.+++.++.+.+ +++||++||..+|+......             ..|..+|
T Consensus        84 ih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~-vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y  162 (363)
T d2c5aa1          84 FNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF  162 (363)
T ss_dssp             EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHH
T ss_pred             eecccccccccccccccccccccccchhhHHHHhHHhhC-ccccccccccccccccccccccccccccccCCcCCCCCHH
Confidence            99997765                556889999999998 89999999999987432111             3567889


Q ss_pred             hHhHhhhhHHHHHH
Q 040431          132 EMTELIDQKIFIYF  145 (157)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (157)
                      +.+|.+.|.+...+
T Consensus       163 g~sK~~~E~~~~~~  176 (363)
T d2c5aa1         163 GLEKLATEELCKHY  176 (363)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999885544

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.8e-22  Score=149.38  Aligned_cols=141  Identities=16%  Similarity=0.160  Sum_probs=109.7

Q ss_pred             CeE-EEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh----hcCCCeEEEEccCCChHHHHHHhc--Cc
Q 040431            5 SKI-LFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH----FKNLGVNLVIGDVLNHESLVKAIK--QV   77 (157)
Q Consensus         5 ~~i-litGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~~~~~~~~--~~   77 (157)
                      +|| ||||||||||++|+++|+++|++|++++|..+..+..+++.+..    ....+++++.+|+.|++.+.+++.  ++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   80 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP   80 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence            578 99999999999999999999999999999865544444443321    223578999999999999999987  67


Q ss_pred             CEEEEcCCCcc---------------hHHHHHHHHHHHHhcC--CccEEEeccccccccCCCc------cCCccchhhHh
Q 040431           78 DVVISTVGHTL---------------LADQVKIIAAIKEAEG--ASRGTLRTQKGKMSSLSSE------MTTTLDMLEMT  134 (157)
Q Consensus        78 d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~--~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~  134 (157)
                      ++++|+++...               +.++.++++++++.+.  ..+|||+||..+|+..+..      ...|.++|+.+
T Consensus        81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~~Yg~s  160 (347)
T d1t2aa_          81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA  160 (347)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred             ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCCHHHHH
Confidence            89999988764               4468899999998862  2479999999999753221      14567899999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |.+.|.+...+
T Consensus       161 K~~aE~~~~~~  171 (347)
T d1t2aa_         161 KLYAYWIVVNF  171 (347)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999885554

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.4e-22  Score=148.30  Aligned_cols=143  Identities=17%  Similarity=0.221  Sum_probs=113.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC-----CCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI-----SGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~   76 (157)
                      .+||||||||||||++|+++|++.|++|++++|....     ...+..+.++.....++.++.+|+.|.+.+.+++.  +
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   81 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence            4689999999999999999999999999999763221     11233444555567789999999999999999887  4


Q ss_pred             cCEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------CCccchhhHh
Q 040431           77 VDVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------TTTLDMLEMT  134 (157)
Q Consensus        77 ~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------~~~~~~~~~~  134 (157)
                      +++++|+|+...               +.++.++++++.+.+ +++|+++||..+|+......       ..+..+|+.+
T Consensus        82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~-v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~  160 (346)
T d1ek6a_          82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS  160 (346)
T ss_dssp             EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred             cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcC-cccccccccceeeeccccccccccccccccCChHHHH
Confidence            678999999765               566889999999998 89999999998886543222       4567789999


Q ss_pred             HhhhhHHHHHHHh
Q 040431          135 ELIDQKIFIYFWG  147 (157)
Q Consensus       135 ~~~~~~~~~~~~~  147 (157)
                      |...+.....++.
T Consensus       161 k~~~e~~~~~~~~  173 (346)
T d1ek6a_         161 KFFIEEMIRDLCQ  173 (346)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888666544

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.88  E-value=1.2e-21  Score=147.64  Aligned_cols=140  Identities=16%  Similarity=0.188  Sum_probs=110.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +||+|||||||||||++|+++|+++|++|.++.++.... ......+......++.++.+|+.|.+.+.+++...|.|+|
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~-~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY-AGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCT-TCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCc-cccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            378999999999999999999999999877777654322 2222233444567899999999999999999999999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------------------cCCccc
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------------------MTTTLD  129 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------------------~~~~~~  129 (157)
                      +|+...               +.++.+++.++.+.+  .+++++||..+|+..+..                  ...|.+
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~--~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s  157 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD--IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSS  157 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCS
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhcccc--ccccccccceEecccCccccccccccCcccccccCCCCCCCC
Confidence            999865               566899999999987  578999998888643111                  134568


Q ss_pred             hhhHhHhhhhHHHHHH
Q 040431          130 MLEMTELIDQKIFIYF  145 (157)
Q Consensus       130 ~~~~~~~~~~~~~~~~  145 (157)
                      .|+.+|.+.|.+...+
T Consensus       158 ~Y~~sK~~~E~~~~~~  173 (346)
T d1oc2a_         158 PYSSTKAASDLIVKAW  173 (346)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999999885443

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.87  E-value=1.5e-21  Score=148.18  Aligned_cols=138  Identities=14%  Similarity=0.199  Sum_probs=104.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC-CCCCCCchhhHhhhh-cCCCeEEEEccCCChHHHHHHhc--CcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE-STISGPSKSQLLDHF-KNLGVNLVIGDVLNHESLVKAIK--QVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~--~~d~v   80 (157)
                      |||||||||||||++|+++|++.|++|++..++ +......   .+... ...++.++.+|++|++++.++++  ++|+|
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLE---SLSDISESNRYNFEHADICDSAEITRIFEQYQPDAV   77 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGG---GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHH---HHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence            589999999999999999999999986554443 2222122   22222 24589999999999999999987  58999


Q ss_pred             EEcCCCcc---------------hHHHHHHHHHHHHhc--------CCccEEEeccccccccCCCc--------------
Q 040431           81 ISTVGHTL---------------LADQVKIIAAIKEAE--------GASRGTLRTQKGKMSSLSSE--------------  123 (157)
Q Consensus        81 v~~a~~~~---------------~~~~~~l~~~~~~~~--------~~~~~v~~Ss~~~~~~~~~~--------------  123 (157)
                      ||+|+...               +.++.+++++|.+.+        ..++|+++||..+|+.....              
T Consensus        78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e  157 (361)
T d1kewa_          78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE  157 (361)
T ss_dssp             EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred             EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence            99999765               445788999988764        13589999999999754211              


Q ss_pred             --cCCccchhhHhHhhhhHHHHHH
Q 040431          124 --MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                        ...|.++|+.+|.+.|.+...+
T Consensus       158 ~~~~~p~s~Yg~sK~~~E~~~~~~  181 (361)
T d1kewa_         158 TTAYAPSSPYSASKASSDHLVRAW  181 (361)
T ss_dssp             TSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH
Confidence              1356778999999999985544

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=2.9e-21  Score=147.64  Aligned_cols=142  Identities=17%  Similarity=0.212  Sum_probs=106.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC-------------CCCC--CCchhhHhhhhcCCCeEEEEccCCChH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE-------------STIS--GPSKSQLLDHFKNLGVNLVIGDVLNHE   68 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~-------------~~~~--~~~~~~~~~~~~~~~v~~~~~D~~~~~   68 (157)
                      .|||||||||||||++|+++|++.||+|++++.-             ....  .......+......+++++.+|+.|.+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence            3799999999999999999999999999998621             0111  012222334445678999999999999


Q ss_pred             HHHHHhc--CcCEEEEcCCCcc------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----
Q 040431           69 SLVKAIK--QVDVVISTVGHTL------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----  123 (157)
Q Consensus        69 ~~~~~~~--~~d~vv~~a~~~~------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----  123 (157)
                      .+.++++  ++|+|||+|+...                  +.++.++++++.+.+...++++.||..+|+.....     
T Consensus        81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~  160 (393)
T d1i24a_          81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY  160 (393)
T ss_dssp             HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred             HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccccc
Confidence            9999997  5799999998643                  56689999999999844567888887777543211     


Q ss_pred             --------------cCCccchhhHhHhhhhHHHHHH
Q 040431          124 --------------MTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       124 --------------~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                                    ...|.+.|+.+|.+.|.+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~  196 (393)
T d1i24a_         161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFT  196 (393)
T ss_dssp             EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccHHHHHhhhhccccccc
Confidence                          1355678999999999885433

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=6.2e-21  Score=143.29  Aligned_cols=140  Identities=16%  Similarity=0.163  Sum_probs=113.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      +++|||||||||||++|+++|++.|++|++++|..... ....+.+.    .....++.++.+|..|...........+.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~   94 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGH-QRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY   94 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-HHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcc-hhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccc
Confidence            67999999999999999999999999999999865432 22222221    22236799999999999999988889999


Q ss_pred             EEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhh
Q 040431           80 VISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELID  138 (157)
Q Consensus        80 vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~  138 (157)
                      ++|.++...               +.++.+++++|.+.+ +++|||+||..+|+..+..      ...|.+.|+.+|...
T Consensus        95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~  173 (341)
T d1sb8a_          95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVN  173 (341)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHH
T ss_pred             cccccccccccccccCccchhheeehhHHHHHHHHHhcC-CceEEEcccceeeCCCCCCCccCCCCCCCCCcchHHHHHH
Confidence            999998754               667999999999998 8999999999999754322      156789999999999


Q ss_pred             hHHHHHH
Q 040431          139 QKIFIYF  145 (157)
Q Consensus       139 ~~~~~~~  145 (157)
                      |.+...+
T Consensus       174 E~~~~~~  180 (341)
T d1sb8a_         174 ELYADVF  180 (341)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9885444

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=2.6e-20  Score=138.46  Aligned_cols=139  Identities=15%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      ++|||||||||||++|+++|+++||+|++++|..+..+..+++.+.  ...++.++.+|+.|.+.+.+.+.  ..++++|
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG--IEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhc--ccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            5899999999999999999999999999999986554333333322  23578999999999999998876  5788898


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  141 (157)
                      +++...               ..++.++++++.+.+...+|++.||..+|+......      ..+...|+.+|.+.+.+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~  158 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWI  158 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHHHHHHHHHH
Confidence            888765               456889999999998445788888877775443222      35788999999999888


Q ss_pred             HHHH
Q 040431          142 FIYF  145 (157)
Q Consensus       142 ~~~~  145 (157)
                      ...+
T Consensus       159 ~~~~  162 (321)
T d1rpna_         159 TVNY  162 (321)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.85  E-value=1.8e-20  Score=139.58  Aligned_cols=138  Identities=14%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEEc
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIST   83 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~~   83 (157)
                      ||||||||||||++|+++|+++|++|+++++-.........+.+.  ...+++++.+|+.|.+++.++++  ++|+|||+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~--~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS--SLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH--TTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh--ccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            799999999999999999999999999987543322122222222  24579999999999999999997  47999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----------------------cC
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----------------------MT  125 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------------------~~  125 (157)
                      |+...               +.++.++++++.+.+ ..++++.||..++...+..                       ..
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL  158 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhccc-ccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence            99865               567899999999998 7666666665544322111                       02


Q ss_pred             CccchhhHhHhhhhHHHHHHH
Q 040431          126 TTLDMLEMTELIDQKIFIYFW  146 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~  146 (157)
                      .+...|+..+...+.+...+.
T Consensus       159 ~~~~~y~~~k~~~e~~~~~~~  179 (338)
T d1orra_         159 DFHSPYGCSKGAADQYMLDYA  179 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhhh
Confidence            456778888887777654443

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.85  E-value=4.4e-20  Score=137.69  Aligned_cols=139  Identities=14%  Similarity=0.203  Sum_probs=107.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcE------EEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPT------FVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v------~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      |||+|||||||||++|++.|+++|++|      +.+++...........  ......++.++.+|..+..........+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~d   78 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLA--PVDADPRLRFVHGDIRDAGLLARELRGVD   78 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGG--GGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhh--hhhcCCCeEEEEeccccchhhhccccccc
Confidence            589999999999999999999999754      3443332221111111  12234679999999999999999999999


Q ss_pred             EEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc------CCccchhhHhHhh
Q 040431           79 VVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM------TTTLDMLEMTELI  137 (157)
Q Consensus        79 ~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~------~~~~~~~~~~~~~  137 (157)
                      .|+|+|+...               +.++.++++++.+.+ +++|||+||..+|+......      ..|.++|+.+|..
T Consensus        79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~sK~~  157 (322)
T d1r6da_          79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAG  157 (322)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHHH
T ss_pred             eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcC-CceEEEeecceeecCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence            9999998864               566899999999998 89999999999997643221      4677899999999


Q ss_pred             hhHHHHHHH
Q 040431          138 DQKIFIYFW  146 (157)
Q Consensus       138 ~~~~~~~~~  146 (157)
                      .|.+...+.
T Consensus       158 ~E~~~~~~~  166 (322)
T d1r6da_         158 SDLVARAYH  166 (322)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998855443

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.5e-21  Score=136.99  Aligned_cols=123  Identities=15%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +++|+|||||||+|++|+++|+++|.  +|++++|++......        ...++....+|+.+.+++.+.++++|++|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~--------~~~~i~~~~~D~~~~~~~~~~~~~~d~vi   85 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--------AYKNVNQEVVDFEKLDDYASAFQGHDVGF   85 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--------GGGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc--------ccceeeeeeeccccccccccccccccccc
Confidence            67899999999999999999999994  899999986554221        12467888899999999999999999999


Q ss_pred             EcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           82 STVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        82 ~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      |++|...            ...+.++++++.+.+ +++|+++|+.+++..       +...|..+|...|+.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-v~~fi~~Ss~~~~~~-------~~~~Y~~~K~~~E~~l  150 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADKS-------SNFLYLQVKGEVEAKV  150 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCTT-------CSSHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccC-ccccccCCccccccC-------ccchhHHHHHHhhhcc
Confidence            9999765            446788999999998 899999999888753       2346778887777663

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.6e-21  Score=145.28  Aligned_cols=132  Identities=14%  Similarity=0.188  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ++||+|||||||+|++|+++|++.|++|++++|..... .+...  ......++++...|+.     +.++.++|+|||+
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~-~~~~~--~~~~~~~~d~~~~~~~-----~~~~~~~d~Vihl   72 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGR-KRNVE--HWIGHENFELINHDVV-----EPLYIEVDQIYHL   72 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC-GGGTG--GGTTCTTEEEEECCTT-----SCCCCCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCC-HHHHH--HhcCCCceEEEehHHH-----HHHHcCCCEEEEC
Confidence            47899999999999999999999999999998754332 22111  1122334555555553     3445689999999


Q ss_pred             CCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----------cCCccchhhHhHhh
Q 040431           84 VGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----------MTTTLDMLEMTELI  137 (157)
Q Consensus        84 a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------~~~~~~~~~~~~~~  137 (157)
                      |+...               +.++.++++++++.+ + ++||+||..+|++....           ...|...|+.+|.+
T Consensus        73 Aa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~-~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~  150 (312)
T d2b69a1          73 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRV  150 (312)
T ss_dssp             CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHH
T ss_pred             cccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHH
Confidence            99754               556899999999987 4 89999999999754221           12467889999999


Q ss_pred             hhHHHHHH
Q 040431          138 DQKIFIYF  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .|.+...+
T Consensus       151 ~E~~~~~~  158 (312)
T d2b69a1         151 AETMCYAY  158 (312)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99885443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=4.7e-20  Score=137.85  Aligned_cols=143  Identities=13%  Similarity=0.132  Sum_probs=106.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhcCCCeEEEEccCCChHHHHHHhc--Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFKNLGVNLVIGDVLNHESLVKAIK--QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~~~~~~~~--~~   77 (157)
                      ++++||||||||||++|+++|+++|++|++++|..+..+..+.+.+.    ......+.++.+|+.+.+++.+.++  ++
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence            46899999999999999999999999999999976544444444332    2234568899999999999999886  68


Q ss_pred             CEEEEcCCCcc---------------hHHHHHHHHHHHHhc----CCccEEEeccccccccCCCcc-----CCccchhhH
Q 040431           78 DVVISTVGHTL---------------LADQVKIIAAIKEAE----GASRGTLRTQKGKMSSLSSEM-----TTTLDMLEM  133 (157)
Q Consensus        78 d~vv~~a~~~~---------------~~~~~~l~~~~~~~~----~~~~~v~~Ss~~~~~~~~~~~-----~~~~~~~~~  133 (157)
                      |+|||+|+...               ..++.+++.++++..    ...++++.||...++..+...     ..|.+.|+.
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~~~p~~~Y~~  160 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAA  160 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHHH
T ss_pred             chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCCCCCCCcchhhH
Confidence            99999999865               444667777776542    134677777776665543322     457889999


Q ss_pred             hHhhhhHHHHHHH
Q 040431          134 TELIDQKIFIYFW  146 (157)
Q Consensus       134 ~~~~~~~~~~~~~  146 (157)
                      +|.+.|.+...+.
T Consensus       161 sK~~~E~~~~~~~  173 (339)
T d1n7ha_         161 SKCAAHWYTVNYR  173 (339)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998855543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.84  E-value=1.2e-20  Score=142.08  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=106.3

Q ss_pred             CCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-----hcCCCeEEEEccCCChHHHHHHhcC
Q 040431            2 ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-----FKNLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         2 ~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      .+.++|+|||||||||++|+++|+++|++|++++|+     ..+.+.+..     .......++.+|+.|.+++.+++.+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~   83 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS-----ASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKG   83 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTT
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC-----chhHHHHHHhhhccccccccEEEeccccchhhhhhhccc
Confidence            345799999999999999999999999999999998     433333221     1123345678999999999999999


Q ss_pred             cCEEEEcCCCcc------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC-----------------------
Q 040431           77 VDVVISTVGHTL------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS-----------------------  121 (157)
Q Consensus        77 ~d~vv~~a~~~~------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~-----------------------  121 (157)
                      +|.|+|+++...            +.++.++++++.+.+++++|+|+||..+.....                       
T Consensus        84 ~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  163 (342)
T d1y1pa1          84 AAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT  163 (342)
T ss_dssp             CSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred             chhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccc
Confidence            999999999865            567899999998875489999999976532111                       


Q ss_pred             ---CccCCccchhhHhHhhhhHHHHHH
Q 040431          122 ---SEMTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       122 ---~~~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                         .....+...|+.+|...|++.+.+
T Consensus       164 ~~e~~~~~p~~~Y~~sK~~~E~~~~~~  190 (342)
T d1y1pa1         164 LPESDPQKSLWVYAASKTEAELAAWKF  190 (342)
T ss_dssp             SCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCcCcccchhHhHHHHHHHh
Confidence               111345667999999988875444

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.7e-20  Score=138.90  Aligned_cols=133  Identities=16%  Similarity=0.252  Sum_probs=102.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHH-HhcCcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVK-AIKQVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~d~vv~   82 (157)
                      |||||||||||||++|+++|+++| ++|+++++.+..     ...+  ....+++++.+|+++.+++.+ +++++|+|||
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~-----~~~~--~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih   73 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-----ISRF--LNHPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG-----GGGG--TTCTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc-----hhhh--ccCCCeEEEECccCChHHHHHHHHhCCCcccc
Confidence            589999999999999999999999 589999876322     2111  124679999999988766655 6678999999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc-------------CCccchhhHh
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM-------------TTTLDMLEMT  134 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------------~~~~~~~~~~  134 (157)
                      +|+...               +.++.++++++.+.+  .++++.||..+|+..+...             ..|...|+.+
T Consensus        74 ~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~--~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~s  151 (342)
T d2blla1          74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVS  151 (342)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHH
T ss_pred             ccccccccccccCCcccccccccccccccccccccc--ccccccccccccccccccccccccccccccccCCCcchhhhc
Confidence            999865               566899999999987  4667888888876432211             2456789999


Q ss_pred             HhhhhHHHHHHH
Q 040431          135 ELIDQKIFIYFW  146 (157)
Q Consensus       135 ~~~~~~~~~~~~  146 (157)
                      |...|++...+.
T Consensus       152 K~~~E~~~~~~~  163 (342)
T d2blla1         152 KQLLDRVIWAYG  163 (342)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccchhhhhhhhh
Confidence            999998855543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.82  E-value=1.6e-19  Score=132.82  Aligned_cols=138  Identities=37%  Similarity=0.548  Sum_probs=110.4

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +++|||||||||++|++|+++|+++|++|++++|+.......+.+.+..+...+++++.+|+.|.+++.+++.+.+.+++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            36789999999999999999999999999999998766544555556666677899999999999999999999999999


Q ss_pred             cCCCcc----hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL----LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~----~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      +++...    ..++.+++.++.+.+ ..++++.||.+.+.........+...+...+...+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~v~~Ss~g~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (312)
T d1qyda_          82 ALAGGVLSHHILEQLKLVEAIKEAG-NIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRA  143 (312)
T ss_dssp             CCCCSSSSTTTTTHHHHHHHHHHSC-CCSEEECSCCSSCTTSCCCCCSSTTHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhHHHHHHHHhc-CCcEEEEeeccccCCCcccccchhhhhhHHHHHHHHh
Confidence            887754    556788889998887 6788888887776655444445555666665555444

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=9.6e-20  Score=135.10  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=96.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      ++||||||||||||++|+++|+++|+.|+++.+..                      .+|+.|.+.+.++++  .+|.|+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~----------------------~~~~~~~~~~~~~~~~~~~d~v~   59 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERIDQVY   59 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch----------------------hccccCHHHHHHHHhhcCCCEEE
Confidence            67999999999999999999999999988765431                      158889999998887  589999


Q ss_pred             EcCCCcc----------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc-----------cCCccchhhHh
Q 040431           82 STVGHTL----------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE-----------MTTTLDMLEMT  134 (157)
Q Consensus        82 ~~a~~~~----------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------~~~~~~~~~~~  134 (157)
                      |+|+...                +.++.++++++.+.+ +++|||+||..+|+.....           ...+.++|+.+
T Consensus        60 ~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~s  138 (315)
T d1e6ua_          60 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIA  138 (315)
T ss_dssp             ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHH
T ss_pred             EcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHH
Confidence            9997654                566899999999998 8999999999999754221           01234579999


Q ss_pred             HhhhhHHHHHH
Q 040431          135 ELIDQKIFIYF  145 (157)
Q Consensus       135 ~~~~~~~~~~~  145 (157)
                      |.+.|++...+
T Consensus       139 K~~~E~~~~~~  149 (315)
T d1e6ua_         139 KIAGIKLCESY  149 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999885443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.81  E-value=1e-18  Score=133.00  Aligned_cols=141  Identities=16%  Similarity=0.257  Sum_probs=105.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh-CCCcEEEEecCCCC----CCCchhh----Hhh-------hhcCCCeEEEEccCCCh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK-AGHPTFVLVRESTI----SGPSKSQ----LLD-------HFKNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~-~g~~v~~~~r~~~~----~~~~~~~----~~~-------~~~~~~v~~~~~D~~~~   67 (157)
                      .|||||||||||||++|+++|++ .|++|+++++-...    ...+..+    .+.       ...+..+.++.+|++|+
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            56999999999999999999986 58999999752111    0011111    111       11234688999999999


Q ss_pred             HHHHHHhc---CcCEEEEcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC-------
Q 040431           68 ESLVKAIK---QVDVVISTVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS-------  122 (157)
Q Consensus        68 ~~~~~~~~---~~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~-------  122 (157)
                      +.+.++++   ++|+|+|+|+...               ..++.+++.++.+.+ .+++++.|+...|.....       
T Consensus        82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccC-Ccccccccccccccccccccccccc
Confidence            99999986   5799999999865               556889999999998 899999998888764322       


Q ss_pred             ------ccCCccchhhHhHhhhhHHHHHH
Q 040431          123 ------EMTTTLDMLEMTELIDQKIFIYF  145 (157)
Q Consensus       123 ------~~~~~~~~~~~~~~~~~~~~~~~  145 (157)
                            ....|..+|+.+|...+.+...+
T Consensus       161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~  189 (383)
T d1gy8a_         161 EPIDINAKKSPESPYGESKLIAERMIRDC  189 (383)
T ss_dssp             CCBCTTSCCBCSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCHHHhhHhHHHHHHHHH
Confidence                  11457899999999998885443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.81  E-value=1.3e-18  Score=130.67  Aligned_cols=135  Identities=17%  Similarity=0.201  Sum_probs=101.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      .|||||||||||||++|++.|+++|++|++++|..... +...+..  ....+++++.+|++|++.+.++++  .+|+|+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~-~~~~~~~--~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV-PSLFETA--RVADGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS-SCHHHHT--TTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc-HHHHhhh--hcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence            58999999999999999999999999999999986543 2211111  123579999999999999999887  689999


Q ss_pred             EcCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCC-------CccCCccchhhHhHhhhh
Q 040431           82 STVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLS-------SEMTTTLDMLEMTELIDQ  139 (157)
Q Consensus        82 ~~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~-------~~~~~~~~~~~~~~~~~~  139 (157)
                      |+|+...               +.++.++++++.+.+....+++.|+...+....       .....|.++|+.++...+
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e  164 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAE  164 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHH
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccccch
Confidence            9999865               555889999999987345555555554443221       111456788888888776


Q ss_pred             HH
Q 040431          140 KI  141 (157)
Q Consensus       140 ~~  141 (157)
                      ..
T Consensus       165 ~~  166 (356)
T d1rkxa_         165 LV  166 (356)
T ss_dssp             HH
T ss_pred             hh
Confidence            55

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.79  E-value=4.3e-19  Score=129.19  Aligned_cols=131  Identities=11%  Similarity=0.047  Sum_probs=103.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh----HhhhhcCCCeEEEEccCCChHHHHHHhc-
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ----LLDHFKNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~----~~~~~~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      |.+.|+++||||+++||++++++|+++|++|++.+|++    .+.++    .+.+....++.++.+|++|+++++++++ 
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~----~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~   76 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD----AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDN   76 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC----HHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHH
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            55678999999999999999999999999999999873    22222    2223345678999999999999998875 


Q ss_pred             ------CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 ------QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 ------~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                            ++|++|||||...                       ...++.+++.+++.+ .++||++||..+....+     
T Consensus        77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~~~-----  150 (260)
T d1x1ta1          77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLVASA-----  150 (260)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCT-----
T ss_pred             HHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeecccccceeccC-----
Confidence                  5999999999875                       334777888888887 68999999987765432     


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+...+
T Consensus       151 ~~~~Y~asKaal~~l  165 (260)
T d1x1ta1         151 NKSAYVAAKHGVVGF  165 (260)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CcchhhhhhhhHHHh
Confidence            345788888876665

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=2.6e-18  Score=124.01  Aligned_cols=128  Identities=14%  Similarity=0.079  Sum_probs=103.7

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+++||+++++.|+++|++|++.+|+     +++++.+.+....++.++++|++|+++++++++       
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL-----DEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFG   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            36899999999999999999999999999999998     666665544445678899999999999988875       


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      .+|++|||||...                       ...++.+++.+.+.+ .++||++||..+....+     ....|.
T Consensus        80 ~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~~~-----~~~~Y~  153 (244)
T d1nffa_          80 GLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLAGTV-----ACHGYT  153 (244)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCT-----TBHHHH
T ss_pred             CCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC-cceEEeccccccccccc-----cccchh
Confidence            5899999999875                       333667778888876 68999999987765432     346788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+...+
T Consensus       154 asKaal~~l  162 (244)
T d1nffa_         154 ATKFAVRGL  162 (244)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            888876665

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.5e-18  Score=125.23  Aligned_cols=128  Identities=12%  Similarity=0.076  Sum_probs=104.4

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+++||+++++.|+++|++|++.+|+     +++++.+.+....+...+.+|++|+++++++++       
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~-----~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATS-----ENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            36899999999999999999999999999999998     666665554445678889999999999988875       


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++|||||...                       ...++.+++.+++.+ .++||++||..+....+     ....|.
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~~~~-----~~~~Y~  151 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVGTMGNG-----GQANYA  151 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCCT-----TCHHHH
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhhcCCCC-----CCHHHH
Confidence            6999999999876                       334777888888877 68999999987765432     345788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+...+
T Consensus       152 asKaal~~l  160 (243)
T d1q7ba_         152 AAKAGLIGF  160 (243)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876666

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.78  E-value=4.2e-18  Score=123.53  Aligned_cols=127  Identities=13%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+++||.+++++|+++|++|++.+|+     .++++.+.+....++.++++|++|+++++++++       +
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVL-----DEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999999998     556554443335678999999999999988875       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ....+.+++.+++.+ .++||++||..+....+     ....|..
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS~~~~~~~~-----~~~~Y~a  153 (254)
T d1hdca_          80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLMGLA-----LTSSYGA  153 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCT-----TCHHHHH
T ss_pred             ccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccccchhccccc-----chhhHHH
Confidence            999999999876                       333667777788877 78999999987765432     3457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       154 sKaal~~l  161 (254)
T d1hdca_         154 SKWGVRGL  161 (254)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876655

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.77  E-value=4.2e-18  Score=124.26  Aligned_cols=115  Identities=51%  Similarity=0.753  Sum_probs=98.1

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCC-chhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGP-SKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +++||||||||||+|++++++|++.|++|++++|++..... ++...+......+++++.+|+.+.+.+.+.+.+.+.++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi   81 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   81 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence            37899999999999999999999999999999998665422 23334455556789999999999999999999999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      |.++......+..+++++.+.+ ..++++.|+.+...
T Consensus        82 ~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~s~~~~~~  117 (307)
T d1qyca_          82 STVGSLQIESQVNIIKAIKEVG-TVKRFFPSEFGNDV  117 (307)
T ss_dssp             ECCCGGGSGGGHHHHHHHHHHC-CCSEEECSCCSSCT
T ss_pred             ecccccccchhhHHHHHHHHhc-cccceeeecccccc
Confidence            9999998888899999999998 78898988865544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.77  E-value=6.8e-18  Score=122.52  Aligned_cols=129  Identities=12%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+++||+++++.|+++|++|++.+|+     .++++.+.+....++.++.+|++|+++++++++       
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADIN-----LEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC-----HHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999998     666665444445678999999999999998875       


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++|||||...                       ...++.+++.+.+.+..++||++||..+....+     ....|.
T Consensus        79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~-----~~~~Y~  153 (256)
T d1k2wa_          79 SIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEA-----LVGVYC  153 (256)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-----TCHHHH
T ss_pred             CccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccc-----cccchh
Confidence            6999999999865                       222455566555543257999999987764332     346788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+...+
T Consensus       154 asKaal~~l  162 (256)
T d1k2wa_         154 ATKAAVISL  162 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhhHHHHH
Confidence            888876655

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=2.9e-18  Score=124.20  Aligned_cols=128  Identities=14%  Similarity=0.087  Sum_probs=98.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh----HhhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ----LLDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~----~~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .++++||||+++||+++|+.|++.|++|++.+|+     .++++    .+.+....++.++.+|++|+++++++++    
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~-----~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN-----LEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999998     44433    2223334578889999999999888875    


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++|||||...                       ...++.+++.+++.+ .+++|++||..+.....    ....
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~S~~~~~~~~----~~~~  154 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEEVTM----PNIS  154 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTCCCS----SSCH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccccchhccccC----cccc
Confidence               6999999999865                       333777788888776 68999999865432111    2245


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+...+
T Consensus       155 ~Y~asKaal~~l  166 (251)
T d1vl8a_         155 AYAASKGGVASL  166 (251)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             chHHHHHhHHHH
Confidence            788888866655

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.77  E-value=1.7e-17  Score=119.86  Aligned_cols=128  Identities=13%  Similarity=0.046  Sum_probs=100.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+++||+++++.|++.|++|++.+|++.    +..+...+....++.++++|++|+++++++++       +
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA----PEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch----HHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999998742    22222233335678999999999999988865       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++.+++.+++.+ .+++|++||..+....     .....|..
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~~-----~~~~~Y~a  154 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWLKI-----EAYTHYIS  154 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGSCC-----SSCHHHHH
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhcccC-----cccccchh
Confidence            999999999976                       334777888888887 6899999998775432     23457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+-..+
T Consensus       155 sKaal~~l  162 (247)
T d2ew8a1         155 TKAANIGF  162 (247)
T ss_dssp             HHHHHHHH
T ss_pred             hhccHHHH
Confidence            88866555

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.8e-17  Score=119.82  Aligned_cols=127  Identities=11%  Similarity=0.112  Sum_probs=100.1

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |.+.++++||||+++||+++++.|+++|++|++.+|+     ++..+..++.   +..++++|++|+++++++++     
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~-----~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-----PEGKEVAEAI---GGAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----TTHHHHHHHH---TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHc---CCeEEEEeCCCHHHHHHHHHHHHHh
Confidence            3457899999999999999999999999999999998     4444433333   45778999999999888875     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                       ...++.+++.+++.+ .++||++||..+....     .....
T Consensus        74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~~~~-----~~~~~  147 (248)
T d2d1ya1          74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLFAE-----QENAA  147 (248)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSBC-----TTBHH
T ss_pred             cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccccccccc-----cccch
Confidence              6999999999865                       334777788888876 6899999998776543     23567


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+...+
T Consensus       148 Y~asKaal~~l  158 (248)
T d2d1ya1         148 YNASKGGLVNL  158 (248)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            88888866555

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.76  E-value=5.7e-18  Score=123.11  Aligned_cols=128  Identities=11%  Similarity=0.114  Sum_probs=100.0

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-----hhhcCCCeEEEEccCCChHHHHHHhc--
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-----DHFKNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      +.|+++||||+++||+++++.|++.|++|++.+|+     .++++..     +...+.++.++.+|++|+++++++++  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~-----~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS-----SEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHH
Confidence            36899999999999999999999999999999998     5544322     12234568889999999999988875  


Q ss_pred             -----CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCC
Q 040431           76 -----QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTT  126 (157)
Q Consensus        76 -----~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~  126 (157)
                           ++|++|||||...                        ...++.+++.+++.+ .++||++||..+....     .
T Consensus        78 ~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~~-----~  151 (258)
T d1iy8a_          78 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIRGI-----G  151 (258)
T ss_dssp             HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSBC-----S
T ss_pred             HHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhccCC-----C
Confidence                 6999999999753                        333666777777776 6899999998776432     2


Q ss_pred             ccchhhHhHhhhhHH
Q 040431          127 TLDMLEMTELIDQKI  141 (157)
Q Consensus       127 ~~~~~~~~~~~~~~~  141 (157)
                      ....|..+|.+...+
T Consensus       152 ~~~~Y~asKaal~~l  166 (258)
T d1iy8a_         152 NQSGYAAAKHGVVGL  166 (258)
T ss_dssp             SBHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHH
Confidence            356788888876555

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-17  Score=119.96  Aligned_cols=127  Identities=13%  Similarity=0.083  Sum_probs=102.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||+++|++|++.|++|++.+|+     .++++.+.+   ....++.++.+|++|++++.++++     
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~-----~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN-----KHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998     666553322   234578899999999999988775     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        .+|++|||||...                       +..++.+++.+.+.+ .++||++||..+....     .....
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~~~~-----~~~~~  155 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHVSV-----PFLLA  155 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CCCH-----HHHHH
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhcCCC-----CCcHH
Confidence              5999999999976                       333777888888887 7899999998876532     23567


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+-..+
T Consensus       156 Y~asKaal~~~  166 (244)
T d1yb1a_         156 YCSSKFAAVGF  166 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888876665

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.75  E-value=2.2e-17  Score=119.51  Aligned_cols=129  Identities=13%  Similarity=0.064  Sum_probs=102.1

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +.|+++||||+++||+++++.|++.|++|++++|+     .++++.+. +.  ...++.++.+|++|++++.++++    
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~-----~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT-----QKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS-----HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999998     55544322 22  23468899999999999988875    


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++|||||...                       ....+.+++.+.+.+ .++||++||..+....+     ...
T Consensus        84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~~~~-----~~~  157 (251)
T d2c07a1          84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGLTGNV-----GQA  157 (251)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCCT-----TCH
T ss_pred             hcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHhcCCCC-----CCH
Confidence               6999999999866                       333677788888887 78999999987765322     345


Q ss_pred             hhhHhHhhhhHHH
Q 040431          130 MLEMTELIDQKIF  142 (157)
Q Consensus       130 ~~~~~~~~~~~~~  142 (157)
                      .|..+|.+...+.
T Consensus       158 ~Y~asKaal~~lt  170 (251)
T d2c07a1         158 NYSSSKAGVIGFT  170 (251)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7888888766663

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=3e-17  Score=118.18  Aligned_cols=125  Identities=17%  Similarity=0.141  Sum_probs=96.4

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+++||+++++.|++.|++|++++|+     .++++...+  ..+..++.+|++|+++++++++       
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~-----~~~l~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIE-----EGPLREAAE--AVGAHPVVMDVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHH--TTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHH--HcCCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999998     555554433  2357889999999999988875       


Q ss_pred             CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           76 QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ++|++|||||...                       ....+.+++.+.+.+ ...++++||.+..+.      .....|.
T Consensus        77 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~ss~~~~~~------~~~~~Y~  149 (242)
T d1ulsa_          77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRVYLGN------LGQANYA  149 (242)
T ss_dssp             SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGGGGCC------TTCHHHH
T ss_pred             CceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeeccccccCC------CCCcchH
Confidence            5899999999865                       233566677777766 577888777543322      2356788


Q ss_pred             HhHhhhhHH
Q 040431          133 MTELIDQKI  141 (157)
Q Consensus       133 ~~~~~~~~~  141 (157)
                      .+|.+-..+
T Consensus       150 asKaal~~l  158 (242)
T d1ulsa_         150 ASMAGVVGL  158 (242)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876665

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=3.8e-17  Score=115.56  Aligned_cols=126  Identities=15%  Similarity=0.142  Sum_probs=94.9

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCc--EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHP--TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +|++||||||||++|++++++|+++|++  |+.++|+     +++...+    ..+++++.+|+.+.+++.++++++|.|
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~-----~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS-----AQGKEKI----GGEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESC-----HHHHHHT----TCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCC-----HHHHHhc----cCCcEEEEeeeccccccccccccceee
Confidence            4789999999999999999999999986  4556666     4333222    357899999999999999999999999


Q ss_pred             EEcCCCcc----------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhh
Q 040431           81 ISTVGHTL----------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLE  132 (157)
Q Consensus        81 v~~a~~~~----------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~  132 (157)
                      ||+++...                            ..++++++..+.... .+.+.+.|+...+.........+...+.
T Consensus        73 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~  151 (252)
T d2q46a1          73 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VKHIVVVGSMGGTNPDHPLNKLGNGNIL  151 (252)
T ss_dssp             EECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CSEEEEEEETTTTCTTCGGGGGGGCCHH
T ss_pred             EEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc-ccccccccccccCCCCcccccccccchh
Confidence            99998753                            456888898888887 7888888887766543333333333444


Q ss_pred             HhHhhh
Q 040431          133 MTELID  138 (157)
Q Consensus       133 ~~~~~~  138 (157)
                      ..+...
T Consensus       152 ~~~~~~  157 (252)
T d2q46a1         152 VWKRKA  157 (252)
T ss_dssp             HHHHHH
T ss_pred             hhhhhh
Confidence            444333

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.2e-17  Score=116.65  Aligned_cols=127  Identities=15%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~v   80 (157)
                      .|+++||||+++||+++++.|+++|++|++++|+     +++++.+.+.. .++..+.+|++|+++++++++   ++|++
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~-----~~~l~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT-----QADLDSLVREC-PGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHS-TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHHhc-CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence            5799999999999999999999999999999998     66665443332 368899999999999999886   68999


Q ss_pred             EEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhh
Q 040431           81 ISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELI  137 (157)
Q Consensus        81 v~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~  137 (157)
                      |||||...                       ...++.+++.+.+.+..++++++||..+....+     ....|..+|.+
T Consensus        81 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~-----~~~~Y~asKaa  155 (244)
T d1pr9a_          81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT-----NHSVYCSTKGA  155 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-----TBHHHHHHHHH
T ss_pred             EeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccccc-----chhhhhhhHHH
Confidence            99999876                       233566666554443258999999987765332     34578888886


Q ss_pred             hhHH
Q 040431          138 DQKI  141 (157)
Q Consensus       138 ~~~~  141 (157)
                      ...+
T Consensus       156 l~~l  159 (244)
T d1pr9a_         156 LDML  159 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=7.7e-17  Score=116.02  Aligned_cols=128  Identities=16%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDV   79 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~   79 (157)
                      +.|+++||||+++||+++++.|+++|++|++++|+     .++++.+.+.. .++..+.+|++|+++++++++   ++|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~l~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT-----NSDLVSLAKEC-PGIEPVCVDLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHS-TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHhc-CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence            46899999999999999999999999999999998     55655443332 468899999999999999987   6899


Q ss_pred             EEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           80 VISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        80 vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      +|||||...                       ...++.+++.+.+.+..+++|++||.......+     ....|..+|.
T Consensus        78 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-----~~~~Y~asKa  152 (242)
T d1cyda_          78 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP-----NLITYSSTKG  152 (242)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-----TBHHHHHHHH
T ss_pred             EEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCC-----ccccccchHH
Confidence            999999865                       222455565554443257999999987654322     3457888888


Q ss_pred             hhhHH
Q 040431          137 IDQKI  141 (157)
Q Consensus       137 ~~~~~  141 (157)
                      +...+
T Consensus       153 al~~l  157 (242)
T d1cyda_         153 AMTML  157 (242)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66555

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=3.8e-17  Score=117.29  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=94.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .|+++||||+++||+++++.|++.|++|++++|+....             .++..+++|++|+++++++++       +
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   73 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-------------KGLFGVEVDVTDSDAVDRAFTAVEEHQGP   73 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh-------------cCceEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999999999999985432             346778999999999988875       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ....+.+++.+.+.+ .++||++||..+....+     ....|..
T Consensus        74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~~~~~~~-----~~~~Y~a  147 (237)
T d1uzma1          74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLWGIG-----NQANYAA  147 (237)
T ss_dssp             CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC----------CCHHHHH
T ss_pred             ceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchhhccCCc-----ccHHHHH
Confidence            999999999865                       333667778888887 78999999987764322     3557888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       148 sKaal~~l  155 (237)
T d1uzma1         148 SKAGVIGM  155 (237)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876665

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.74  E-value=5.2e-17  Score=117.30  Aligned_cols=135  Identities=16%  Similarity=0.138  Sum_probs=98.9

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      |+ +++|+||||+++||.+++++|++.|+  .|++..|+     .++++.+++..+.++.++.+|++|.++++++++   
T Consensus         1 M~-~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~-----~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~   74 (250)
T d1yo6a1           1 MS-PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD-----VEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVG   74 (250)
T ss_dssp             CC-CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS-----GGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             Cc-CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCC-----HHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHH
Confidence            65 79999999999999999999999996  57777888     666666666666789999999999998887754   


Q ss_pred             ------CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc----------CCccEEEecccc
Q 040431           76 ------QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE----------GASRGTLRTQKG  115 (157)
Q Consensus        76 ------~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~----------~~~~~v~~Ss~~  115 (157)
                            ++|++|||||...                        +..++.+++.+++.+          ...+++.+|+..
T Consensus        75 ~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~  154 (250)
T d1yo6a1          75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL  154 (250)
T ss_dssp             HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred             HHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccc
Confidence                  3899999999753                        223566666666543          124677777655


Q ss_pred             ccccCCC--ccCCccchhhHhHhhhhHH
Q 040431          116 KMSSLSS--EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       116 ~~~~~~~--~~~~~~~~~~~~~~~~~~~  141 (157)
                      .......  ....+...|..+|.+...+
T Consensus       155 ~~~~~~~~~~~~~~~~aY~aSKaal~~l  182 (250)
T d1yo6a1         155 GSITDNTSGSAQFPVLAYRMSKAAINMF  182 (250)
T ss_dssp             GCSTTCCSTTSSSCBHHHHHHHHHHHHH
T ss_pred             ccccCCcccccchhHHHHHHHHHHHHHH
Confidence            4432221  2234455699999977666

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-17  Score=117.43  Aligned_cols=126  Identities=14%  Similarity=0.155  Sum_probs=99.8

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.|+++||||+++||+++++.|+++|++|++++|+     +++++.+.+.. .++.++.+|++|+++++++++       
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~-----~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD-----ESGGRALEQEL-PGAVFILCDVTQEDDVKTLVSETIRRFG   78 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHC-TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHhc-CCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence            36899999999999999999999999999999998     66666554432 468899999999999998875       


Q ss_pred             CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 ~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                      ++|++|||||...                        ...++.+++.+++.+  +++|++||..+....+     ....|
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~Ii~isS~~~~~~~~-----~~~~Y  151 (250)
T d1ydea1          79 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ--GNVINISSLVGAIGQA-----QAVPY  151 (250)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCHHHHHCCT-----TCHHH
T ss_pred             CCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC--CCCccccccccccccc-----Ccchh
Confidence            5899999999653                        333667777777654  6899999987765432     34578


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+...+
T Consensus       152 ~asKaal~~l  161 (250)
T d1ydea1         152 VATKGAVTAM  161 (250)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhhHHHH
Confidence            8888866555

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.73  E-value=5.1e-17  Score=118.08  Aligned_cols=128  Identities=12%  Similarity=0.114  Sum_probs=100.5

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +.++++||||+++||+++++.|+++|++|++++|+     .++++.+. +.  ...++.++.+|++|+++++++++    
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN-----REALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999998     55554332 22  23468899999999999888875    


Q ss_pred             ---CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ---QVDVVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ---~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                         ++|++|||||...                        ...++.+++.+.+.+ .+++|++||..+....+     ..
T Consensus        79 ~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~~~~-----~~  152 (260)
T d1zema1          79 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVKGPP-----NM  152 (260)
T ss_dssp             HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHSCCT-----TB
T ss_pred             HhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc-CCCCCeeechhhccCCc-----ch
Confidence               6999999999753                        333677778787776 68999999987765432     34


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+...+
T Consensus       153 ~~Y~asKaal~~l  165 (260)
T d1zema1         153 AAYGTSKGAIIAL  165 (260)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5788888876555

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.73  E-value=8.4e-18  Score=122.83  Aligned_cols=121  Identities=20%  Similarity=0.211  Sum_probs=91.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |||||||||||||++|++.|.+.|+.| .+++....                   +.+|++|.+.++++++  ++|+|||
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~~~D~Vih   60 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE-------------------FCGDFSNPKGVAETVRKLRPDVIVN   60 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS-------------------SCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc-------------------ccCcCCCHHHHHHHHHHcCCCEEEE
Confidence            589999999999999999999988754 44444211                   2479999999999987  5799999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  141 (157)
                      +||...               ...+..+++++.+.+  .+++++||..+|......      ...|...|+.++...+..
T Consensus        61 ~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y~~~k~~~e~~  138 (298)
T d1n2sa_          61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKA  138 (298)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred             ecccccccccccCccccccccccccccchhhhhccc--cccccccccccccCCCCCCCccccccCCCchHhhhhhhhhhh
Confidence            999765               445778888888876  578888887776533221      145778899999988887


Q ss_pred             HHHHHh
Q 040431          142 FIYFWG  147 (157)
Q Consensus       142 ~~~~~~  147 (157)
                      ...++.
T Consensus       139 ~~~~~~  144 (298)
T d1n2sa_         139 LQDNCP  144 (298)
T ss_dssp             HHHHCS
T ss_pred             HHhhhc
Confidence            555443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-17  Score=121.12  Aligned_cols=129  Identities=10%  Similarity=0.082  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----h-hhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----D-HFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~-~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .|+++||||+++||+++++.|+++|++|++++|+     .++.+..    . .....++.++.+|++|+++++++++   
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN-----LEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            6899999999999999999999999999999998     5444322    1 1224568899999999999988875   


Q ss_pred             ----CcCEEEEcCCCcc---------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCccchhhHh
Q 040431           76 ----QVDVVISTVGHTL---------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        76 ----~~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                          ++|++|||||...               ...++.+++.+.+.+  ..++||++||..+....+     ....|..+
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~-----~~~~Y~as  152 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA-----QQPVYCAS  152 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT-----TCHHHHHH
T ss_pred             HHcCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCC-----CccchHHH
Confidence                6999999999987               334666677776653  125799999987764322     34578888


Q ss_pred             HhhhhHHH
Q 040431          135 ELIDQKIF  142 (157)
Q Consensus       135 ~~~~~~~~  142 (157)
                      |.+...+.
T Consensus       153 Kaal~~lt  160 (254)
T d2gdza1         153 KHGIVGFT  160 (254)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88766663

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.73  E-value=9.3e-17  Score=116.37  Aligned_cols=127  Identities=14%  Similarity=0.135  Sum_probs=96.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHhc------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      |.++||||+++||++++++|+++|++|++.+|+     +++++.+. +.  ...++.++.+|++|++++.++++      
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYN-----DATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            456999999999999999999999999999998     55554332 22  23568889999999999988875      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|++|||||...                       ...++.+++.+.+.+...+++++||..+....+     ....|
T Consensus        77 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~-----~~~~Y  151 (255)
T d1gega_          77 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP-----ELAVY  151 (255)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-----TBHHH
T ss_pred             CCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCc-----ccccc
Confidence             6999999999865                       233556666666665357899999987654332     34578


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+...+
T Consensus       152 ~asKaal~~l  161 (255)
T d1gega_         152 SSSKFAVRGL  161 (255)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhCHHHHHhh
Confidence            8888866555

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.73  E-value=3.2e-17  Score=118.74  Aligned_cols=126  Identities=15%  Similarity=0.088  Sum_probs=99.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .++++||||+++||+++++.|+++|++|++.+|+     +++++.+.+....+..++.+|++|+++++++++       +
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN-----EAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999999999999999999987     666665544445678889999999999888875       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhH
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      +|++|||||...                       ...++.+++.+++.+  ++||++||..+....     .....|..
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--G~Iv~isS~~~~~~~-----~~~~~Y~a  153 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLPI-----EQYAGYSA  153 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSCC-----TTBHHHHH
T ss_pred             CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--CceecccchhhhcCc-----cccccccc
Confidence            899999999865                       333666777776543  789999998775432     23457888


Q ss_pred             hHhhhhHH
Q 040431          134 TELIDQKI  141 (157)
Q Consensus       134 ~~~~~~~~  141 (157)
                      +|.+...+
T Consensus       154 sKaal~~l  161 (253)
T d1hxha_         154 SKAAVSAL  161 (253)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            88866555

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.73  E-value=3.6e-17  Score=118.98  Aligned_cols=129  Identities=12%  Similarity=0.077  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||.++|++|++.|++|++.+|+..    +.++.+ ++.  ...++.++++|++|+++++++++     
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~----~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE----DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH----HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999832    222222 221  23468889999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                       ...++.+++.+.+.+....|+++||.......+     ....
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~-----~~~~  157 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWP-----LFVH  157 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT-----TCHH
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCc-----cccc
Confidence              6899999999875                       333777788888776334589999987654322     2457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+...+
T Consensus       158 Y~asKaal~~l  168 (261)
T d1geea_         158 YAASKGGMKLM  168 (261)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cccCCccchhh
Confidence            88888766555

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.73  E-value=5.8e-17  Score=117.24  Aligned_cols=128  Identities=12%  Similarity=0.075  Sum_probs=99.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhc-CCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFK-NLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~-~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .++++||||+++||+++++.|++.|++|++.+|+     +++++.+. +.. ..++.++.+|++|+++++++++      
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH-----SDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999998     55555433 222 3478999999999999888875      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|++|||||...                       ...++.+++.+++.+...++|++||..+....     +....|
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~-----~~~~~Y  155 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD-----PSLGAY  155 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC-----TTCHHH
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC-----CCchhH
Confidence             6899999999975                       33366667777776622489999998776432     235678


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+...+
T Consensus       156 ~asKaal~~l  165 (251)
T d1zk4a1         156 NASKGAVRIM  165 (251)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            8888876655

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.73  E-value=8.8e-17  Score=117.26  Aligned_cols=128  Identities=14%  Similarity=0.151  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hhc-CCCeEEEEccCCChHHHHHHhc------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HFK-NLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~-~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      .|+++||||+++||+++|++|+++|++|++++|+     .++++.+. +.. ...+.++.+|++|+++++++++      
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~-----~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA-----DDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999999999998     55555332 332 2457889999999999998875      


Q ss_pred             -CcCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 -QVDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                       ++|++|||||...                         ...++.+++.+.+.+ .++++++||..+....+.    ...
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~~~~~----~~~  155 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTAGEG----VSH  155 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCCCTT----SCH
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccccccccccccc----ccc
Confidence             6899999999753                         333677777887776 689999999776643222    233


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+...+
T Consensus       156 ~Y~asKaal~~l  167 (268)
T d2bgka1         156 VYTATKHAVLGL  167 (268)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccchhHHHHHhC
Confidence            688888866555

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.73  E-value=2.4e-17  Score=118.81  Aligned_cols=127  Identities=15%  Similarity=0.050  Sum_probs=98.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh---hhcCCCeEEEEccCCChHHHHHHhc------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD---HFKNLGVNLVIGDVLNHESLVKAIK------   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~~~~~~~~------   75 (157)
                      +.++||||+++||++++++|+++|++|++.++++    ++.++.+.   +....++.++++|++|+++++++++      
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~----~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARS----AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999999876552    33333222   1224578889999999999988875      


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       ++|++|||||...                       ...++.+++.|++.+ .++||++||..+....+     ....|
T Consensus        78 g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~~~~-----~~~~Y  151 (244)
T d1edoa_          78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLIGNI-----GQANY  151 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCCT-----TCHHH
T ss_pred             CCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcChhhcCCCC-----CCHHH
Confidence             6899999999876                       344777888888877 68999999988765432     34578


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+-..+
T Consensus       152 ~asKaal~~l  161 (244)
T d1edoa_         152 AAAKAGVIGF  161 (244)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
Confidence            8888866555

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.2e-16  Score=115.15  Aligned_cols=133  Identities=13%  Similarity=0.105  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh---CCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK---AGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~---~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      |++|+||||+++||.++|++|++   .|++|++.+|+....  +.++.+.+ ...++.++.+|++|+++++++++     
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~--~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA--KELEDLAK-NHSNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC--HHHHHHHH-HCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--HHHHHHHh-cCCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            67999999999999999999974   689999999985432  12222222 24579999999999988887654     


Q ss_pred             ----CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHhc----------CCccEEEecccccc
Q 040431           76 ----QVDVVISTVGHTL------------------------LADQVKIIAAIKEAE----------GASRGTLRTQKGKM  117 (157)
Q Consensus        76 ----~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~~----------~~~~~v~~Ss~~~~  117 (157)
                          ++|++|||||...                        ...++.+++.+++..          ..+++|++||..+.
T Consensus        79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~  158 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  158 (248)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence                4899999999754                        222556666666541          14689999996554


Q ss_pred             ccCCCccCCccchhhHhHhhhhHH
Q 040431          118 SSLSSEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~  141 (157)
                      ..  .........|..+|.+...+
T Consensus       159 ~~--~~~~~~~~~Y~aSKaal~~l  180 (248)
T d1snya_         159 IQ--GNTDGGMYAYRTSKSALNAA  180 (248)
T ss_dssp             ST--TCCSCCCHHHHHHHHHHHHH
T ss_pred             cC--CCCCCChHHHHHHHHHHHHH
Confidence            32  11123455899999876665

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.1e-17  Score=118.40  Aligned_cols=130  Identities=16%  Similarity=0.111  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhh-cCCCeEEEEccCCChHHHHHHhc---
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHF-KNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~-~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      .++++||||+++||.++|+.|+++|++|++.+|+     +++++.+    +.. .+..+.++++|++|++++.++++   
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~-----~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCART-----VGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998     5554433    222 23467889999999999988875   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                          ++|++|||||...                       ...++.+++.+.+.+ ..+++|++||..++...+.   ..
T Consensus        85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~---~~  161 (257)
T d1xg5a_          85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPL---SV  161 (257)
T ss_dssp             HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSC---GG
T ss_pred             HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCC---cc
Confidence                6999999999865                       223555666666654 1479999999877543322   23


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+...+
T Consensus       162 ~~~Y~~sKaal~~l  175 (257)
T d1xg5a_         162 THFYSATKYAVTAL  175 (257)
T ss_dssp             GHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhC
Confidence            45688888876655

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.72  E-value=9e-17  Score=115.53  Aligned_cols=126  Identities=10%  Similarity=0.141  Sum_probs=99.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCc-------EEEEecCCCCCCCchhhHhh-hh--cCCCeEEEEccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHP-------TFVLVRESTISGPSKSQLLD-HF--KNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~-------v~~~~r~~~~~~~~~~~~~~-~~--~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      ..++||||+++||+++++.|++.|++       |++.+|+     .++++.+. +.  ...++.++.+|++|++++++++
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~-----~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~   76 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT-----AADLEKISLECRAEGALTDTITADISDMADVRRLT   76 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC-----HHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC-----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence            35899999999999999999999987       8888887     55554332 22  2346788999999999998887


Q ss_pred             c-------CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc
Q 040431           75 K-------QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        75 ~-------~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                      +       ++|++|||||...                       ...++.+++.|++.+ .+++|++||..+....+   
T Consensus        77 ~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~~~---  152 (240)
T d2bd0a1          77 THIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATKAFR---  152 (240)
T ss_dssp             HHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCT---
T ss_pred             HHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEechhhcCCCC---
Confidence            5       5999999999875                       344778888888887 68999999988765433   


Q ss_pred             CCccchhhHhHhhhhHH
Q 040431          125 TTTLDMLEMTELIDQKI  141 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~  141 (157)
                        ....|..+|.+...+
T Consensus       153 --~~~~Y~asK~al~~l  167 (240)
T d2bd0a1         153 --HSSIYCMSKFGQRGL  167 (240)
T ss_dssp             --TCHHHHHHHHHHHHH
T ss_pred             --CChHHHHHHHHHHHH
Confidence              345788888876655

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.72  E-value=1e-16  Score=117.43  Aligned_cols=127  Identities=16%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+++||+++++.|+++|++|++++|+     +++++.+.+....++..+.+|+++++++++++.       
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~-----~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS-----AERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhC
Confidence            35899999999999999999999999999999998     666665544445678999999999999888865       


Q ss_pred             CcCEEEEcCCCcc----------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCc
Q 040431           76 QVDVVISTVGHTL----------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ~~d~vv~~a~~~~----------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                      .+|++|||||...                            ...++.+++.+++.+  .++|+++|..+....     ..
T Consensus        79 ~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~S~~~~~~~-----~~  151 (276)
T d1bdba_          79 KIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTISNAGFYPN-----GG  151 (276)
T ss_dssp             CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTSTT-----SS
T ss_pred             CcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeeeechhccCC-----CC
Confidence            6899999999643                            223666777777764  578888887655332     23


Q ss_pred             cchhhHhHhhhhHH
Q 040431          128 LDMLEMTELIDQKI  141 (157)
Q Consensus       128 ~~~~~~~~~~~~~~  141 (157)
                      ...|..+|.+...+
T Consensus       152 ~~~Y~asKaal~~l  165 (276)
T d1bdba_         152 GPLYTAAKHAIVGL  165 (276)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHH
Confidence            45788888876655

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.72  E-value=5.6e-17  Score=117.82  Aligned_cols=137  Identities=14%  Similarity=0.131  Sum_probs=98.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~   76 (157)
                      .|+++||||+++||.+++++|++.|++|++++|+.... .+..+.+.+....++.++.+|++|+++++++++       +
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~-~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA-VEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH-HHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999999999999985432 122222323335678999999999999988875       6


Q ss_pred             cCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc--CCccchh
Q 040431           77 VDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM--TTTLDML  131 (157)
Q Consensus        77 ~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~--~~~~~~~  131 (157)
                      +|++|||||...                       ...++.+++.+.+.+..+.++..|+...........  ......|
T Consensus        88 iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~~~~~~~~Y  167 (260)
T d1h5qa_          88 ISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFY  167 (260)
T ss_dssp             EEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCHHH
T ss_pred             CcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccccCccccch
Confidence            999999999864                       233566677765554356777777765543322211  2345678


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+...+
T Consensus       168 ~asKaal~~l  177 (260)
T d1h5qa_         168 NSSKAACSNL  177 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhhhhHHHH
Confidence            8888876665

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.72  E-value=9.7e-17  Score=120.49  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=87.7

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH-HHHHhcCcCEEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES-LVKAIKQVDVVI   81 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~~~~~d~vv   81 (157)
                      ++++|+||||||++|++++++|++.|++|++++|++++.   +.+.+  ....+++++.+|+.|+.+ +..++.++|+++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~---~~~~~--~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL---IAEEL--QAIPNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH---HHHHH--HTSTTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh---hhhhh--cccCCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            478999999999999999999999999999999985431   22222  234579999999988554 677888999998


Q ss_pred             EcCCCcc---hHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           82 STVGHTL---LADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        82 ~~a~~~~---~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      ++.....   ...+.++++++.+.+ +.++++.||.....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~aa~~ag-v~~~v~~Ss~~~~~  115 (350)
T d1xgka_          77 INTTSQAGDEIAIGKDLADAAKRAG-TIQHYIYSSMPDHS  115 (350)
T ss_dssp             ECCCSTTSCHHHHHHHHHHHHHHHS-CCSEEEEEECCCGG
T ss_pred             eecccccchhhhhhhHHHHHHHHhC-CCceEEEeeccccc
Confidence            8766543   667889999999998 88888888866544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.1e-16  Score=115.93  Aligned_cols=127  Identities=11%  Similarity=0.063  Sum_probs=99.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||.++|++|++.|++|++.+|+     .++++.+ ++.  ...++.++++|++|+++++++++     
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDIN-----ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999998     5554432 222  23568899999999999888765     


Q ss_pred             --CcCEEEEcCCCcc----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 --QVDVVISTVGHTL----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 --~~d~vv~~a~~~~----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                        ++|++|||||...                      ...++.+++.+.+.+ ..++|++||..+....+     ....|
T Consensus        86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~~~~~-----~~~~Y  159 (255)
T d1fmca_          86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAENKNI-----NMTSY  159 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCCCT-----TCHHH
T ss_pred             cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchhcccc-----ccccc
Confidence              6999999999865                      333667778888887 67899999987765432     34578


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+...+
T Consensus       160 ~asKaal~~l  169 (255)
T d1fmca_         160 ASSKAAASHL  169 (255)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            8888876555

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.72  E-value=1.8e-16  Score=115.14  Aligned_cols=128  Identities=13%  Similarity=0.162  Sum_probs=99.1

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--CCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--NLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +.++++||||+++||+++++.|+++|++|++.+|+     +++++.. ++..  ..++.++.+|++|+++++++++    
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN-----QKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999998     5555432 2222  3467889999999999887764    


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          .+|++|||||...                       ...++.+++.+.+.+ .+++|++||..+....+     ..
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~~~-----~~  155 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGALAVP-----YE  155 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTSCCT-----TC
T ss_pred             HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc-ccccccccccccccccc-----cc
Confidence                3899999999865                       333666777788876 68999999987654322     34


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+...+
T Consensus       156 ~~Y~asKaal~~l  168 (259)
T d2ae2a_         156 AVYGATKGAMDQL  168 (259)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHH
Confidence            5788888866655

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=2.6e-16  Score=114.24  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=92.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||.++++.|++.|++|++++|+     +++++.. ++.  ...++.++.+|++|+++++++++     
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~-----~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN-----EYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999998     5554432 222  23468999999999998887764     


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         .+|++|||||...                       ...++.+++.+++.+ .++||++||..+....+     ...
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~~~-----~~~  156 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVVSAS-----VGS  156 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC---------------CC
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-ccccccccccccccccc-----ccc
Confidence               4899999999865                       333667777788877 78999999977654322     345


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+...+
T Consensus       157 ~Y~asKaal~~l  168 (259)
T d1xq1a_         157 IYSATKGALNQL  168 (259)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cccccccchhhh
Confidence            788888876655

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.70  E-value=2.9e-16  Score=113.81  Aligned_cols=127  Identities=17%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .|.++||||+++||+++++.|+++|++|++.+|+     +++++.. +++  ...++.++++|++|+++++++++     
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~-----~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARG-----EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVER   76 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999998     5554432 222  24568899999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHH--HHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAA--IKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~--~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                        ++|++|||||...                   ..+    ++.+++.  +.+.+ ..+++++||..+....+     ..
T Consensus        77 ~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~-~g~Ii~i~S~~~~~~~~-----~~  150 (257)
T d2rhca1          77 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQGVV-----HA  150 (257)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHT-EEEEEEECCGGGTSCCT-----TC
T ss_pred             hCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcC-Ccccccccccccccccc-----cc
Confidence              5999999999865                   222    3334432  33444 57899999987765432     34


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+...+
T Consensus       151 ~~Y~asKaal~~l  163 (257)
T d2rhca1         151 APYSASKHGVVGF  163 (257)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            5788888876665

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.69  E-value=5.3e-16  Score=112.31  Aligned_cols=132  Identities=15%  Similarity=0.163  Sum_probs=96.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCC-ChHHHHHHhc-----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVL-NHESLVKAIK-----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~-~~~~~~~~~~-----   75 (157)
                      +.++++||||+++||.+++++|+++|++|+++.|+...  .+..+.+ ......++.++.+|++ +.+++++++.     
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN--PTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC--HHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCccc--HHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999988543  2222222 2334457899999997 5566766654     


Q ss_pred             --CcCEEEEcCCCcc---------------hHHHHHHHHHHHHhc--CCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           76 --QVDVVISTVGHTL---------------LADQVKIIAAIKEAE--GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        76 --~~d~vv~~a~~~~---------------~~~~~~l~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                        ++|++|||||...               ...++.+++.+.+.+  ..+++|++||..++...+     ....|..+|.
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~-----~~~~Y~asKa  156 (254)
T d1sbya1          82 LKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH-----QVPVYSASKA  156 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT-----TSHHHHHHHH
T ss_pred             cCCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCC-----CCHHHHHHHH
Confidence              6999999999876               333666667775542  146899999988765422     3456888887


Q ss_pred             hhhHH
Q 040431          137 IDQKI  141 (157)
Q Consensus       137 ~~~~~  141 (157)
                      +...+
T Consensus       157 al~~~  161 (254)
T d1sbya1         157 AVVSF  161 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65444

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5e-16  Score=114.81  Aligned_cols=127  Identities=12%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hh----hcCCCeEEEEccCCChHHHHHHh
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DH----FKNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~----~~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      +.++++||||+++||.++|++|++.|++|++.+|+     .++++..    ..    ....++.++.+|++|++++.+++
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~-----~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK-----LERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            47899999999999999999999999999999998     5444322    11    12346889999999999998887


Q ss_pred             c-------CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc
Q 040431           75 K-------QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        75 ~-------~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                      +       ++|++|||||...                       ...++.+++.+.+.+ ...+|++|+..... .    
T Consensus        86 ~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~~-~----  159 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKAG-F----  159 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTTC-C----
T ss_pred             HHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-cccccccccccccc-c----
Confidence            5       6899999999765                       233666777777776 67888887643322 1    


Q ss_pred             CCccchhhHhHhhhhHH
Q 040431          125 TTTLDMLEMTELIDQKI  141 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~  141 (157)
                       .....|..+|.+...+
T Consensus       160 -~~~~~Y~asKaal~~l  175 (297)
T d1yxma1         160 -PLAVHSGAARAGVYNL  175 (297)
T ss_dssp             -TTCHHHHHHHHHHHHH
T ss_pred             -cccccchhHHHHHHHH
Confidence             2345677778766555

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.68  E-value=2e-16  Score=114.77  Aligned_cols=113  Identities=16%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVIS   82 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~   82 (157)
                      |||+|||||||||++|+++|.++|++|++++|+.                       +|+.|.++++++++  ++|+|||
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~~~d~vih   58 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEKKPNVVIN   58 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHcCCCEEEe
Confidence            6899999999999999999999999999998761                       48899999999987  6899999


Q ss_pred             cCCCcc---------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC------ccCCccchhhHhHhhhhHH
Q 040431           83 TVGHTL---------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS------EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus        83 ~a~~~~---------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  141 (157)
                      +|+...               ......+...+...+  ..+++.||..+++....      ....+...|...+...+.+
T Consensus        59 ~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~~~~k~~~e~~  136 (281)
T d1vl0a_          59 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG--AEIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENF  136 (281)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             eccccccccccccchhhccccccccccccccccccc--ccccccccceeeeccccccccccccccchhhhhhhhhHHHHH
Confidence            999876               222444555555554  57778888777654321      1256777788888888777


Q ss_pred             H
Q 040431          142 F  142 (157)
Q Consensus       142 ~  142 (157)
                      .
T Consensus       137 ~  137 (281)
T d1vl0a_         137 V  137 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=1.9e-16  Score=111.25  Aligned_cols=116  Identities=12%  Similarity=0.140  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~~d~v   80 (157)
                      ++||+|||||||+|++++++|+++|+  +|++++|++...            ...+   ..+..|..++.+.+. .+|+|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------------~~~~---~~~~~d~~~~~~~~~~~~d~v   66 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRL---DNPVGPLAELLPQLDGSIDTA   66 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTE---ECCBSCHHHHGGGCCSCCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------------cccc---cccccchhhhhhccccchhee
Confidence            47999999999999999999999997  566666663321            1122   333444444444443 58999


Q ss_pred             EEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhhHHH
Q 040431           81 ISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus        81 v~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ||++|...             ...+.++++++++.+ +++++++||.+++..       +...|..+|...|..+
T Consensus        67 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-v~~~i~~Ss~~~~~~-------~~~~y~~~K~~~E~~l  133 (212)
T d2a35a1          67 FCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADAK-------SSIFYNRVKGELEQAL  133 (212)
T ss_dssp             EECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCTT-------CSSHHHHHHHHHHHHH
T ss_pred             eeeeeeeccccccccccccchhhhhhhccccccccc-ccccccccccccccc-------cccchhHHHHHHhhhc
Confidence            99998864             455788999999988 899999999888753       3456778887776653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.67  E-value=1.6e-15  Score=109.95  Aligned_cols=128  Identities=15%  Similarity=0.222  Sum_probs=98.5

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      +.++++||||+++||++++++|+++|++|++.+|+     +++++.. ++.  ...++.++.+|++++++++++++    
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~-----~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN-----EKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999998     5444422 222  24567889999999999887764    


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ..|+++|+||...                       ...++.+++.+.+.+ .++++++||..+....+     ..
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~~~~~-----~~  153 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFSALP-----SV  153 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTSCCT-----TC
T ss_pred             HhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-ccccccccccccccccc-----cc
Confidence                3899999999876                       223556666777776 78999999988765432     35


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+-+.+
T Consensus       154 ~~Y~~sK~al~~l  166 (258)
T d1ae1a_         154 SLYSASKGAINQM  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            5777888766555

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.67  E-value=7.6e-16  Score=112.45  Aligned_cols=128  Identities=13%  Similarity=0.188  Sum_probs=92.3

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh-----cCCCeEEEEccCCChHHHHHHhc-
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF-----KNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~-----~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      +.|+++||||+++||+++|+.|+++|++|++.+|+     .++++... +.     ...++.++.+|++|+++++++++ 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~-----~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   78 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS-----SERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS   78 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999998     55544322 21     22468899999999999988875 


Q ss_pred             ------CcCEEEEcCCCcc---------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCC
Q 040431           76 ------QVDVVISTVGHTL---------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSS  122 (157)
Q Consensus        76 ------~~d~vv~~a~~~~---------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~  122 (157)
                            ++|++|||||...                           ...++.+++.+++.+ ...++++||.+.....  
T Consensus        79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~~~--  155 (272)
T d1xkqa_          79 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQ--  155 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCC--
T ss_pred             HHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-CccccccchhccccCC--
Confidence                  6899999999853                           223566777777664 3444444444433322  


Q ss_pred             ccCCccchhhHhHhhhhHH
Q 040431          123 EMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (157)
                         .....|..+|.+...+
T Consensus       156 ---~~~~~Y~asKaal~~l  171 (272)
T d1xkqa_         156 ---PDFLYYAIAKAALDQY  171 (272)
T ss_dssp             ---CSSHHHHHHHHHHHHH
T ss_pred             ---CCcchhhhHHHHHHHH
Confidence               2245788888866555

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.67  E-value=8.3e-16  Score=112.39  Aligned_cols=128  Identities=13%  Similarity=0.159  Sum_probs=97.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hh--cCCCeEEEEccCCChHHHHHHhc-
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HF--KNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~--~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      +.++++||||+++||+++|+.|++.|++|++.+|+     .++++...    ..  ...++.++.+|++|+++++++++ 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   77 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN-----EDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT   77 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999998     55544322    21  12468899999999999888875 


Q ss_pred             ------CcCEEEEcCCCcc-------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCcc
Q 040431           76 ------QVDVVISTVGHTL-------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEM  124 (157)
Q Consensus        76 ------~~d~vv~~a~~~~-------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~  124 (157)
                            ++|++|||||...                         ...++.+++.+.+.+ ...++++||.......+   
T Consensus        78 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~ii~~ss~~~~~~~~---  153 (274)
T d1xhla_          78 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHS---  153 (274)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCCT---
T ss_pred             HHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc-cccccchhhhhccccCC---
Confidence                  5899999999753                         333667777777776 67888888866543322   


Q ss_pred             CCccchhhHhHhhhhHH
Q 040431          125 TTTLDMLEMTELIDQKI  141 (157)
Q Consensus       125 ~~~~~~~~~~~~~~~~~  141 (157)
                        ....|..+|.+-..+
T Consensus       154 --~~~~Y~asKaal~~l  168 (274)
T d1xhla_         154 --GYPYYACAKAALDQY  168 (274)
T ss_dssp             --TSHHHHHHHHHHHHH
T ss_pred             --CCceehhhhhHHHHH
Confidence              345788888866555

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.66  E-value=3.1e-16  Score=112.72  Aligned_cols=128  Identities=15%  Similarity=0.100  Sum_probs=91.3

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      ..++++||||+++||+++|++|+++|++|++.+|+     .++++.+.+..+.++.++++|++++++++++++       
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g   78 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDRE-----ERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFG   78 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            36899999999999999999999999999999998     666655544445678899999999999988775       


Q ss_pred             CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhc-CCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           76 QVDVVISTVGHTL-------------------LADQVKIIAAIKEAE-GASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                      ++|++||||+...                   ......+.+++...- +.+.++++|+.+....      +....|..+|
T Consensus        79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~------~~~~~Y~~sK  152 (241)
T d2a4ka1          79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA------FGLAHYAAGK  152 (241)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH------HHHHHHHHCS
T ss_pred             CccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc------cCccccchhh
Confidence            5999999999865                   222333333332221 1234555555433221      2345677888


Q ss_pred             hhhhHH
Q 040431          136 LIDQKI  141 (157)
Q Consensus       136 ~~~~~~  141 (157)
                      .+-+.+
T Consensus       153 ~al~~l  158 (241)
T d2a4ka1         153 LGVVGL  158 (241)
T ss_dssp             SHHHHH
T ss_pred             HHHHHH
Confidence            776666

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=4.5e-16  Score=115.29  Aligned_cols=133  Identities=14%  Similarity=0.071  Sum_probs=98.0

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCC----CchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG----PSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~----~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      +.++++||||+++||+++++.|+++|++|++.+|+.+...    .+.++.+.+..........+|+.|.++.+++++   
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            3578999999999999999999999999999988754321    223332222222334556778888777666654   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ++|++|||||...                       ...++.+++.+++.+ .++||++||..+....+     ..
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~~~~~~-----~~  159 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGIYGNF-----GQ  159 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCCT-----TC
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhhcCCCC-----Cc
Confidence                6999999999876                       334777888888887 78999999987764322     34


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+...+
T Consensus       160 ~~Y~asKaal~~l  172 (302)
T d1gz6a_         160 ANYSAAKLGLLGL  172 (302)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6788888876665

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=9.5e-16  Score=111.47  Aligned_cols=127  Identities=12%  Similarity=0.197  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh-hh-----cCCCeEEEEccCCChHHHHHHhc-
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD-HF-----KNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~-----~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      +.|+++||||+++||++++++|+++|++|++.+|+     .++++.+. +.     ...++.++.+|++|+++++++++ 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~-----~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~   78 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRH-----AERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILST   78 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHH
Confidence            36889999999999999999999999999999998     55544322 11     22468999999999999988875 


Q ss_pred             ------CcCEEEEcCCCcc---------------------------hHHHHHHHHHHHHhcCCccEEEecccc-ccccCC
Q 040431           76 ------QVDVVISTVGHTL---------------------------LADQVKIIAAIKEAEGASRGTLRTQKG-KMSSLS  121 (157)
Q Consensus        76 ------~~d~vv~~a~~~~---------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~-~~~~~~  121 (157)
                            ++|++|||||...                           ...++.+++.+++.+  ..+|+++|.. ..... 
T Consensus        79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~--g~iI~~~S~~~~~~~~-  155 (264)
T d1spxa_          79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHAT-  155 (264)
T ss_dssp             HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSSCC-
T ss_pred             HHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc--CcceeeeeeccccccC-
Confidence                  6999999999742                           233667777777765  4566655543 33221 


Q ss_pred             CccCCccchhhHhHhhhhHH
Q 040431          122 SEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~  141 (157)
                          .....|..+|.+...+
T Consensus       156 ----~~~~~Y~asKaal~~l  171 (264)
T d1spxa_         156 ----PDFPYYSIAKAAIDQY  171 (264)
T ss_dssp             ----TTSHHHHHHHHHHHHH
T ss_pred             ----CCchhhhhhhhhHHHH
Confidence                2345688888876555

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-15  Score=111.67  Aligned_cols=132  Identities=14%  Similarity=0.141  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCC-Cchhh-Hhhhh--cCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISG-PSKSQ-LLDHF--KNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~-~~~~~-~~~~~--~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      ++.++||||+++||.++++.|++.|++|+.+.+...+.+ .++++ ..++.  ...++.++.+|++|++++.+++.    
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            466789999999999999999999998766554332211 12222 12222  24578999999999999998875    


Q ss_pred             -CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchh
Q 040431           76 -QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDML  131 (157)
Q Consensus        76 -~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~  131 (157)
                       .+|++|||+|...                       +..++.+++.|++.+ .+++|++||..+....+     ....|
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~~g~~~~~-----~~~~Y  155 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLMGLP-----FNDVY  155 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTSCCT-----TCHHH
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEechhhcCCCC-----CchHH
Confidence             5899999999876                       444777888888887 78999999987765432     34679


Q ss_pred             hHhHhhhhHH
Q 040431          132 EMTELIDQKI  141 (157)
Q Consensus       132 ~~~~~~~~~~  141 (157)
                      ..+|.+...+
T Consensus       156 ~asKaal~~l  165 (285)
T d1jtva_         156 CASKFALEGL  165 (285)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999876665

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.7e-16  Score=111.67  Aligned_cols=127  Identities=11%  Similarity=0.113  Sum_probs=98.1

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      +.++++||||+++||.++|+.|+++|++|++++|+     .++++.+.    ......+..+.+|..+.++......   
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~-----~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   87 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARS-----KETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG   87 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH
Confidence            46899999999999999999999999999999998     65555332    2334567888999998887776654   


Q ss_pred             ----CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCcc
Q 040431           76 ----QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ----~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                          ..|+++||||...                       +..++.+++.+++.+  ++++++||.+++...+     ..
T Consensus        88 ~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~--G~ii~isS~~~~~~~p-----~~  160 (269)
T d1xu9a_          88 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN--GSIVVVSSLAGKVAYP-----MV  160 (269)
T ss_dssp             HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEGGGTSCCT-----TC
T ss_pred             HHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC--CcceEeccchhcCCCC-----Cc
Confidence                6899999999865                       333667777776543  7899999987765432     35


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       161 ~~Y~asKaal~~~  173 (269)
T d1xu9a_         161 AAYSASKFALDGF  173 (269)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            6888998876655

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=7.3e-15  Score=104.96  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~~~d~vv~   82 (157)
                      .|+++||||+++||+++++.|++.|++|++.+|+     ++.++.      ...+++.+|+++ .+.+.+.+.++|++||
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~-----~~~l~~------~~~~~~~~Dv~~~~~~~~~~~g~iD~lVn   72 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARN-----EELLKR------SGHRYVVCDLRKDLDLLFEKVKEVDILVL   72 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHH------TCSEEEECCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHh------cCCcEEEcchHHHHHHHHHHhCCCcEEEe
Confidence            6899999999999999999999999999999998     444322      245678899976 4556666668999999


Q ss_pred             cCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHhhhh
Q 040431           83 TVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTELIDQ  139 (157)
Q Consensus        83 ~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (157)
                      |||...                       ...++.+++.+++.+ .+++|++||.......     .....|..+|.+-.
T Consensus        73 nAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~S~~~~~~~-----~~~~~Y~asKaal~  146 (234)
T d1o5ia_          73 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVISPI-----ENLYTSNSARMALT  146 (234)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-----TTBHHHHHHHHHHH
T ss_pred             cccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccccccccccc-----cccccchhHHHHHH
Confidence            999765                       333677788888876 6899999997665432     23446667777655


Q ss_pred             HH
Q 040431          140 KI  141 (157)
Q Consensus       140 ~~  141 (157)
                      .+
T Consensus       147 ~l  148 (234)
T d1o5ia_         147 GF  148 (234)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.62  E-value=5.4e-15  Score=106.86  Aligned_cols=131  Identities=14%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      ..+++||||+|+||.+++++|+++|++ |++++|+..+. ....+.+++.  ....+.++.+|++|++++.+++.     
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~-~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~   87 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA-DGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD   87 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS-TTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCH-HHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence            358999999999999999999999985 77788864332 1112222222  24568999999999999998876     


Q ss_pred             -CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhH
Q 040431           76 -QVDVVISTVGHTL-------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTE  135 (157)
Q Consensus        76 -~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~  135 (157)
                       .+|.|||++|...                   ..+...+.+++...+ ..+||++||..+....+.     ...|..+|
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~iv~~SS~a~~~g~~~-----~~~YaAak  161 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFSSFASAFGAPG-----LGGYAPGN  161 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEEEHHHHTCCTT-----CTTTHHHH
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccC-CceEeeecchhhccCCcc-----cHHHHHHH
Confidence             4889999999876                   444666666666665 689999999887654333     34577888


Q ss_pred             hhhhHH
Q 040431          136 LIDQKI  141 (157)
Q Consensus       136 ~~~~~~  141 (157)
                      .+.+.+
T Consensus       162 a~l~~l  167 (259)
T d2fr1a1         162 AYLDGL  167 (259)
T ss_dssp             HHHHHH
T ss_pred             HhHHHH
Confidence            776665

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-14  Score=104.35  Aligned_cols=127  Identities=13%  Similarity=0.088  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---CcCE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---QVDV   79 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---~~d~   79 (157)
                      +.++++||||+++||+++++.|+++|++|++.+|+     +++++.+.+  ..++....+|+.+.+.++....   ++|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~-----~~~l~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~id~   77 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN-----ESKLQELEK--YPGIQTRVLDVTKKKQIDQFANEVERLDV   77 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHGGGGG--STTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHh--ccCCceeeeecccccccccccccccccee
Confidence            35899999999999999999999999999999998     555554433  3468889999988877766654   7999


Q ss_pred             EEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHhHh
Q 040431           80 VISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMTEL  136 (157)
Q Consensus        80 vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~  136 (157)
                      +||++|...                       ...++.+++.+.+.+ .++++++||..+...    .......|..+|.
T Consensus        78 lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~~~----~~~~~~~Y~~sKa  152 (245)
T d2ag5a1          78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSVK----GVVNRCVYSTTKA  152 (245)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTB----CCTTBHHHHHHHH
T ss_pred             EEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC-CceeeeeechhhccC----CccchhHHHHHHH
Confidence            999999876                       333666777777776 689999998654211    1234567888888


Q ss_pred             hhhHH
Q 040431          137 IDQKI  141 (157)
Q Consensus       137 ~~~~~  141 (157)
                      +-+.+
T Consensus       153 al~~l  157 (245)
T d2ag5a1         153 AVIGL  157 (245)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77666

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.60  E-value=7.2e-15  Score=108.07  Aligned_cols=128  Identities=11%  Similarity=0.038  Sum_probs=90.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh----HhhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ----LLDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~----~~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .|+++||||+|+||+++|++|++.|++|++++|+     .++++    .+.......+.++.+|+++++++++++.    
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~-----~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK-----MDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence            3789999999999999999999999999999998     44433    2333335678899999999999887764    


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLD  129 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~  129 (157)
                         ++|++||+||...                       .......+..+........++.+||.......+     ...
T Consensus       100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~-----~~~  174 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG-----FVV  174 (294)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT-----TCH
T ss_pred             hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccc-----ccc
Confidence               6999999999875                       111222233333333245677777765544322     244


Q ss_pred             hhhHhHhhhhHH
Q 040431          130 MLEMTELIDQKI  141 (157)
Q Consensus       130 ~~~~~~~~~~~~  141 (157)
                      .|..+|.+-..+
T Consensus       175 ~YsasKaal~~l  186 (294)
T d1w6ua_         175 PSASAKAGVEAM  186 (294)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            688888876665

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.60  E-value=5.9e-15  Score=107.58  Aligned_cols=127  Identities=14%  Similarity=0.076  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-h--hhcCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-D--HFKNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~--~~~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||++++++|+++|++|++++|++.    +.++.+ +  +....++.++++|++|++++.++++     
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~----~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST----ESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch----HHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999988732    222222 1  1224578899999999999988875     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHH----HHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-------------------LAD----QVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~----~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++||+++...                   ..+    .+.+++.+.+.   +++++++|......    .......
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~---g~~i~i~s~~~~~~----~~~~~~~  166 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG---GRLILMGSITGQAK----AVPKHAV  166 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT---CEEEEECCGGGTCS----SCSSCHH
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc---cccccccccccccc----cccchhh
Confidence              5899999999876                   122    34444444433   46777776543321    1234566


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+-+.+
T Consensus       167 Y~asKaal~~l  177 (272)
T d1g0oa_         167 YSGSKGAIETF  177 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888766555

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-15  Score=110.42  Aligned_cols=108  Identities=14%  Similarity=0.160  Sum_probs=78.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      +..+||||+++||.+++++|++. |++|++..|+     .++++.. +++  ...++.++.+|++|.++++++++     
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-----VTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-----HHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHh
Confidence            34599999999999999999986 8999999999     5555432 222  24578999999999999887765     


Q ss_pred             --CcCEEEEcCCCcc-------------------hHHHHHHHHHHHHh-cCCccEEEecccccc
Q 040431           76 --QVDVVISTVGHTL-------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKM  117 (157)
Q Consensus        76 --~~d~vv~~a~~~~-------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~  117 (157)
                        ++|++|||||...                   ..++..+++++... ...+++|++||..+.
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~  142 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSV  142 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccee
Confidence              6999999999865                   22233333333221 013589999997653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.60  E-value=1.9e-15  Score=109.16  Aligned_cols=122  Identities=13%  Similarity=0.073  Sum_probs=90.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------CcC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------QVD   78 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------~~d   78 (157)
                      +++||||+++||+++++.|++.|++|++.+|+     .++.+.++...   ..+..+|++|+++++++++       ++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~-----~~~~~~~~~~~---~~~~~~dv~~~~~~~~~~~~~~~~~G~iD   73 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDES-----FKQKDELEAFA---ETYPQLKPMSEQEPAELIEAVTSAYGQVD   73 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGG-----GGSHHHHHHHH---HHCTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHhhh---CcEEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999999988     44444333221   1234578877776666654       699


Q ss_pred             EEEEcCCCcc------------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccchhhHh
Q 040431           79 VVISTVGHTL------------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDMLEMT  134 (157)
Q Consensus        79 ~vv~~a~~~~------------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~  134 (157)
                      ++|||||...                        ...++.+++.+++.+ .++||++||..+....+     ....|..+
T Consensus        74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~~~~-----~~~~Y~as  147 (252)
T d1zmta1          74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFGPWK-----ELSTYTSA  147 (252)
T ss_dssp             EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTSCCT-----TCHHHHHH
T ss_pred             EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccccccccccc-----cccccccc
Confidence            9999998753                        233667788888877 68999999987765432     34578888


Q ss_pred             HhhhhHH
Q 040431          135 ELIDQKI  141 (157)
Q Consensus       135 ~~~~~~~  141 (157)
                      |.+...+
T Consensus       148 Kaal~~l  154 (252)
T d1zmta1         148 RAGACTL  154 (252)
T ss_dssp             HHHHHHH
T ss_pred             cccHHHH
Confidence            8876655

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=7.9e-15  Score=105.94  Aligned_cols=128  Identities=13%  Similarity=0.066  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh--hcCCCeEEEEccCCChHHHHHHhc----
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH--FKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .|+++||||+|  +||++++++|++.|++|++.+|+     ++..+...+  ....+..++++|++|+++++++++    
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA-----ERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS-----GGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc-----HHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHH
Confidence            57899999987  89999999999999999888876     222221111  123457789999999999988875    


Q ss_pred             ---CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCcc
Q 040431           76 ---QVDVVISTVGHTL-----------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTL  128 (157)
Q Consensus        76 ---~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~  128 (157)
                         ++|++||||+...                       ......+.+++... ...+++|++||..+....+     ..
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~-----~~  157 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP-----KY  157 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT-----TC
T ss_pred             hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCC-----Cc
Confidence               6899999999753                       11122222222211 0135799999977654332     34


Q ss_pred             chhhHhHhhhhHH
Q 040431          129 DMLEMTELIDQKI  141 (157)
Q Consensus       129 ~~~~~~~~~~~~~  141 (157)
                      ..|..+|.+.+.+
T Consensus       158 ~~Y~asKaal~~l  170 (256)
T d1ulua_         158 NVMAIAKAALEAS  170 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            5788888866555

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2e-15  Score=109.36  Aligned_cols=129  Identities=12%  Similarity=0.117  Sum_probs=93.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh---CCCcEEEEecCCCCCCCchhhHhh-h----hcCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK---AGHPTFVLVRESTISGPSKSQLLD-H----FKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~---~g~~v~~~~r~~~~~~~~~~~~~~-~----~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      .+.++||||+++||.+++++|++   +|++|++++|+     .++++.+. +    ..+.++.++.+|++|++++.++++
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~-----~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~   80 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARS-----ESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLS   80 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESC-----HHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECC-----HHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHH
Confidence            57889999999999999999986   69999999998     55554332 1    224468889999999999888763


Q ss_pred             -----------CcCEEEEcCCCcc----------------------hHH----HHHHHHHHHHhc-CCccEEEecccccc
Q 040431           76 -----------QVDVVISTVGHTL----------------------LAD----QVKIIAAIKEAE-GASRGTLRTQKGKM  117 (157)
Q Consensus        76 -----------~~d~vv~~a~~~~----------------------~~~----~~~l~~~~~~~~-~~~~~v~~Ss~~~~  117 (157)
                                 ..|++|||||...                      ..+    ++.+++.+++.+ ..+++|++||..+.
T Consensus        81 ~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~  160 (259)
T d1oaaa_          81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL  160 (259)
T ss_dssp             HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred             HHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence                       3679999998642                      222    334444444432 13589999998776


Q ss_pred             ccCCCccCCccchhhHhHhhhhHHH
Q 040431          118 SSLSSEMTTTLDMLEMTELIDQKIF  142 (157)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~  142 (157)
                      ...+     ....|..+|.+...+.
T Consensus       161 ~~~~-----~~~~Y~asKaal~~lt  180 (259)
T d1oaaa_         161 QPYK-----GWGLYCAGKAARDMLY  180 (259)
T ss_dssp             SCCT-----TCHHHHHHHHHHHHHH
T ss_pred             CCCc-----cchHHHHHHHHHHHHH
Confidence            5432     3568888888776663

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.58  E-value=5.1e-15  Score=107.25  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=88.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhh--cCCCeEEEEccCCChHHHHHHhc-----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHF--KNLGVNLVIGDVLNHESLVKAIK-----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~--~~~~v~~~~~D~~~~~~~~~~~~-----   75 (157)
                      .++++||||+++||.++++.|++.|++|++..+++    .+..+.. ++.  ...++.++.+|++|+++++++++     
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~----~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS----SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC----hHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999877663    2222222 121  24578899999999999988775     


Q ss_pred             --CcCEEEEcCCCcc-----------------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCccCCccch
Q 040431           76 --QVDVVISTVGHTL-----------------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSEMTTTLDM  130 (157)
Q Consensus        76 --~~d~vv~~a~~~~-----------------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~  130 (157)
                        ++|++|||||...                       ....+.+++.+++.   ++++.++|..+... +   ......
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~---g~~iii~s~~~~~~-~---~~~~~~  154 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG---GRIILTSSIAAVMT-G---IPNHAL  154 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE---EEEEEECCGGGTCC-S---CCSCHH
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC---Cccccccccccccc-C---CCCchh
Confidence              6999999999976                       22244444444433   45666665433221 1   123457


Q ss_pred             hhHhHhhhhHH
Q 040431          131 LEMTELIDQKI  141 (157)
Q Consensus       131 ~~~~~~~~~~~  141 (157)
                      |..+|.+-+.+
T Consensus       155 Y~asK~al~~l  165 (259)
T d1ja9a_         155 YAGSKAAVEGF  165 (259)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888766555

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.51  E-value=4.4e-14  Score=100.81  Aligned_cols=123  Identities=16%  Similarity=0.096  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-------h--
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-------I--   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-------~--   74 (157)
                      ..||+||||+++||.+++++|+++|++|++++|+....            ......+.+|..+.+.....       +  
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ------------ADSNILVDGNKNWTEQEQSILEQTASSLQG   69 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT------------SSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc------------ccccceeccccCchhHHHHHHHHHHHHhcC
Confidence            45799999999999999999999999999999985432            11223344555543333222       2  


Q ss_pred             cCcCEEEEcCCCcc--------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhH
Q 040431           75 KQVDVVISTVGHTL--------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        75 ~~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                      .++|++|||||...                    +.++..+.+++... ....+++++||..+....+     ....|..
T Consensus        70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~-----~~~~Y~a  144 (235)
T d1ooea_          70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP-----SMIGYGM  144 (235)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----TBHHHHH
T ss_pred             CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcc-----cccchHH
Confidence            25899999999643                    11222333333222 1136899999987665433     3568999


Q ss_pred             hHhhhhHHHH
Q 040431          134 TELIDQKIFI  143 (157)
Q Consensus       134 ~~~~~~~~~~  143 (157)
                      +|.+...+..
T Consensus       145 sKaal~~l~~  154 (235)
T d1ooea_         145 AKAAVHHLTS  154 (235)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998877743

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=6.5e-14  Score=100.01  Aligned_cols=126  Identities=13%  Similarity=0.029  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh-------c-
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI-------K-   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~-------~-   75 (157)
                      .|+|+||||+|+||.++++.|+++|++|+++++.....            ........+|..+.++...+.       . 
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE------------ASASVIVKMTDSFTEQADQVTAEVGKLLGD   69 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT------------SSEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccccceeecccCcHHHHHHHHHHHHHHhCC
Confidence            68999999999999999999999999999998874322            112233445555444443332       1 


Q ss_pred             -CcCEEEEcCCCcc--------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCccchhhH
Q 040431           76 -QVDVVISTVGHTL--------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTTLDMLEM  133 (157)
Q Consensus        76 -~~d~vv~~a~~~~--------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~~~  133 (157)
                       ++|++|||||...                    +.....+.+++... +..++||++||..+....+     ....|..
T Consensus        70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~-----~~~~Y~a  144 (236)
T d1dhra_          70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP-----GMIGYGM  144 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----TBHHHHH
T ss_pred             CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCcc-----CCcccHH
Confidence             4899999999543                    11222233332221 1136899999987764332     3568999


Q ss_pred             hHhhhhHHHHHHHh
Q 040431          134 TELIDQKIFIYFWG  147 (157)
Q Consensus       134 ~~~~~~~~~~~~~~  147 (157)
                      +|.+...+ ...++
T Consensus       145 sKaal~~l-t~~la  157 (236)
T d1dhra_         145 AKGAVHQL-CQSLA  157 (236)
T ss_dssp             HHHHHHHH-HHHHT
T ss_pred             HHHHHHHH-HHHHH
Confidence            99988777 44443

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.6e-13  Score=99.96  Aligned_cols=127  Identities=16%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHH-HHHh-----cCcCE
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESL-VKAI-----KQVDV   79 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~-----~~~d~   79 (157)
                      |||||||||||++|++.|+++|+ +|+++++-..+   .+...+.+.   .    ..|..+.+.+ ...+     ..++.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~---~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~   71 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG---TKFVNLVDL---N----IADYMDKEDFLIQIMAGEEFGDVEA   71 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSG---GGGHHHHTS---C----CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCc---chhhccccc---c----hhhhccchHHHHHHhhhhcccchhh
Confidence            89999999999999999999995 78888644221   111111111   1    1222232222 2222     36889


Q ss_pred             EEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEeccccccccCCCc------cCCccchhhHhHhhhhH
Q 040431           80 VISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLRTQKGKMSSLSSE------MTTTLDMLEMTELIDQK  140 (157)
Q Consensus        80 vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~  140 (157)
                      |+|.|+...             ..++..+++++.+.+ ++ +++.||..++......      ...+...|+.+|...+.
T Consensus        72 i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-i~-~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~~~e~  149 (307)
T d1eq2a_          72 IFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-IP-FLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDE  149 (307)
T ss_dssp             EEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-CC-EEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHHH
T ss_pred             hhhhccccccccccccccccccccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccchhhh
Confidence            999987654             556788888888887 54 5666665555433221      14678899999999988


Q ss_pred             HHHHH
Q 040431          141 IFIYF  145 (157)
Q Consensus       141 ~~~~~  145 (157)
                      +...+
T Consensus       150 ~~~~~  154 (307)
T d1eq2a_         150 YVRQI  154 (307)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            85444

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.49  E-value=2.7e-14  Score=98.98  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc--CCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK--NLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++||||+|+||+++++.|++.|++|++++|+     .++.+.+.+..  ..++.+..+|+.|.+++++.+.++|+||
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK-----LDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccc-----hHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            6899999999999999999999999999999999     55554433221  2356778999999999999999999999


Q ss_pred             EcCCCcc
Q 040431           82 STVGHTL   88 (157)
Q Consensus        82 ~~a~~~~   88 (157)
                      |+||...
T Consensus        98 n~Ag~g~  104 (191)
T d1luaa1          98 TAGAIGL  104 (191)
T ss_dssp             ECCCTTC
T ss_pred             ecCcccc
Confidence            9999753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.1e-13  Score=94.41  Aligned_cols=129  Identities=14%  Similarity=0.104  Sum_probs=90.9

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-------
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-------   75 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-------   75 (157)
                      +.++++||||+++||.+++++|+++|++|++++|+     .++++.+.+...........|+.+.+++++...       
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLP-----NSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFG   78 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECT-----TSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC-----hHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence            36889999999999999999999999999999998     444444333335678888999998877766553       


Q ss_pred             CcCEEEEcCCCcc-------------------------hHHHHHHHHHH----HHh-----cCCccEEEeccccccccCC
Q 040431           76 QVDVVISTVGHTL-------------------------LADQVKIIAAI----KEA-----EGASRGTLRTQKGKMSSLS  121 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------------------~~~~~~l~~~~----~~~-----~~~~~~v~~Ss~~~~~~~~  121 (157)
                      ..|.++++++...                         ..++..+.+++    ...     .+.++||++||..+.... 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~-  157 (248)
T d2o23a1          79 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQ-  157 (248)
T ss_dssp             CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC-
T ss_pred             cccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCC-
Confidence            5788888876543                         11223333333    222     013589999998876532 


Q ss_pred             CccCCccchhhHhHhhhhHH
Q 040431          122 SEMTTTLDMLEMTELIDQKI  141 (157)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~  141 (157)
                          .....|..+|.+-+.+
T Consensus       158 ----~~~~~Y~asKaal~~l  173 (248)
T d2o23a1         158 ----VGQAAYSASKGGIVGM  173 (248)
T ss_dssp             ----TTCHHHHHHHHHHHHH
T ss_pred             ----CCchHHHHHHHHHHHH
Confidence                2346788888876665

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.38  E-value=7.3e-12  Score=90.70  Aligned_cols=85  Identities=12%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc---
Q 040431            1 MASKSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK---   75 (157)
Q Consensus         1 M~~~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~---   75 (157)
                      |.+.|+++||||+|  +||.++|++|+++|++|++++|+...  .+.++.+... .....+..+|+++.+++.+++.   
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~--~~~~~~l~~~-~~~~~~~~~d~~~~~~~~~~~~~~~   78 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL--EKRVRPIAQE-LNSPYVYELDVSKEEHFKSLYNSVK   78 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT--HHHHHHHHHH-TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHhh-CCceeEeeecccchhhHHHHHHHHH
Confidence            34578999999876  89999999999999999999998321  2233333322 3456788999999988887764   


Q ss_pred             ----CcCEEEEcCCCcc
Q 040431           76 ----QVDVVISTVGHTL   88 (157)
Q Consensus        76 ----~~d~vv~~a~~~~   88 (157)
                          .+|++|||++...
T Consensus        79 ~~~g~id~lV~nag~~~   95 (274)
T d2pd4a1          79 KDLGSLDFIVHSVAFAP   95 (274)
T ss_dssp             HHTSCEEEEEECCCCCC
T ss_pred             HHcCCCCeEEeeccccc
Confidence                6899999999865

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.2e-11  Score=88.78  Aligned_cols=133  Identities=12%  Similarity=0.091  Sum_probs=88.4

Q ss_pred             CCCCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc----
Q 040431            2 ASKSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK----   75 (157)
Q Consensus         2 ~~~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~----   75 (157)
                      .+.++++||||+|  +||+++++.|+++|++|++.+|++..  .+.++.+.. ..........|+.+..+..+.+.    
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL--KGRVEEFAA-QLGSDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT--HHHHHHHHH-HTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHHHHHh-hcCCcceeecccchHHHHHHHHHHhhh
Confidence            3478999999998  79999999999999999999987321  122221111 23456778899998887777664    


Q ss_pred             ---CcCEEEEcCCCcc------------------------hHHHHHHHHHHHHh-cCCccEEEeccccccccCCCccCCc
Q 040431           76 ---QVDVVISTVGHTL------------------------LADQVKIIAAIKEA-EGASRGTLRTQKGKMSSLSSEMTTT  127 (157)
Q Consensus        76 ---~~d~vv~~a~~~~------------------------~~~~~~l~~~~~~~-~~~~~~v~~Ss~~~~~~~~~~~~~~  127 (157)
                         ..|++||+++...                        ......+.+++... +....++++||.++....+     .
T Consensus        80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~-----~  154 (258)
T d1qsga_          80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP-----N  154 (258)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT-----T
T ss_pred             cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCC-----C
Confidence               5899999998864                        11122233333222 1135688888876543322     3


Q ss_pred             cchhhHhHhhhhHHH
Q 040431          128 LDMLEMTELIDQKIF  142 (157)
Q Consensus       128 ~~~~~~~~~~~~~~~  142 (157)
                      ...|..+|.+-+.+.
T Consensus       155 ~~~Y~~sKaal~~lt  169 (258)
T d1qsga_         155 YNVMGLAKASLEANV  169 (258)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            457888888776663

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.35  E-value=5.2e-12  Score=91.78  Aligned_cols=85  Identities=13%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEE-----------------EEccCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNL-----------------VIGDVLN   66 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~-----------------~~~D~~~   66 (157)
                      ++.++||||+++||++++++|+++|++|++.++++.....+..+.+..........                 ..+|+++
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence            45789999999999999999999999999988763211001111222222233333                 4556888


Q ss_pred             hHHHHHHhc-------CcCEEEEcCCCcc
Q 040431           67 HESLVKAIK-------QVDVVISTVGHTL   88 (157)
Q Consensus        67 ~~~~~~~~~-------~~d~vv~~a~~~~   88 (157)
                      +++++++++       ++|++|||||...
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~  110 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFY  110 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccC
Confidence            888887764       6999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.35  E-value=1.2e-11  Score=89.14  Aligned_cols=83  Identities=18%  Similarity=0.155  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCC--CcchHHHHHHHHhCCCcEEEEecCCCCCCCchh-hHhhhhcCCCeEEEEccCCChHHHHHHhc--
Q 040431            1 MASKSKILFIGGT--GYIGKFTVEASVKAGHPTFVLVRESTISGPSKS-QLLDHFKNLGVNLVIGDVLNHESLVKAIK--   75 (157)
Q Consensus         1 M~~~~~ilitGat--G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--   75 (157)
                      |.+.++++||||+  .+||.+++++|+++|++|++.+|+     .++. +.+.+....+...+++|++++++...+++  
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~-----~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v   77 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD-----RLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRV   77 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS-----CHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC-----hHHHHHHHHHHcCCceeeEeeecccccccccccchh
Confidence            4457899999954  579999999999999999999888     4443 44445556678889999999877665543  


Q ss_pred             --------CcCEEEEcCCCcc
Q 040431           76 --------QVDVVISTVGHTL   88 (157)
Q Consensus        76 --------~~d~vv~~a~~~~   88 (157)
                              ..|+++|+++...
T Consensus        78 ~~~~~~~~~ld~~i~~ag~~~   98 (268)
T d2h7ma1          78 TEAIGAGNKLDGVVHSIGFMP   98 (268)
T ss_dssp             HHHHCTTCCEEEEEECCCCCC
T ss_pred             hhccccCCCcceeeecccccC
Confidence                    4799999999753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=3.2e-11  Score=85.47  Aligned_cols=117  Identities=18%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc------CcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK------QVD   78 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~------~~d   78 (157)
                      |+++||||+++||++++++|+++|++|++++|+.+.              .+....++|+.+......+..      ..+
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   67 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG--------------EDLIYVEGDVTREEDVRRAVARAQEEAPLF   67 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS--------------SSSEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc--------------ccceEeeccccchhhhHHHHHhhhcccccc
Confidence            689999999999999999999999999999998432              245677899988777666653      345


Q ss_pred             EEEEcCCCcc-----------------------hHH----HHHHHHHHH------HhcCCccEEEeccccccccCCCccC
Q 040431           79 VVISTVGHTL-----------------------LAD----QVKIIAAIK------EAEGASRGTLRTQKGKMSSLSSEMT  125 (157)
Q Consensus        79 ~vv~~a~~~~-----------------------~~~----~~~l~~~~~------~~~~~~~~v~~Ss~~~~~~~~~~~~  125 (157)
                      .++++++...                       ...    .+.++..+.      +.+ .++||++||..+....+    
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~G~Ii~isS~~~~~~~~----  142 (241)
T d1uaya_          68 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQ-RGVIVNTASVAAFEGQI----  142 (241)
T ss_dssp             EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSC-SEEEEEECCTHHHHCCT----
T ss_pred             chhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccC-ceeeeeecchhhccCCC----
Confidence            5555554432                       111    222222221      222 46899999987765432    


Q ss_pred             CccchhhHhHhhhhHH
Q 040431          126 TTLDMLEMTELIDQKI  141 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~  141 (157)
                       ....|..+|.+...+
T Consensus       143 -~~~~Y~asKaal~~l  157 (241)
T d1uaya_         143 -GQAAYAASKGGVVAL  157 (241)
T ss_dssp             -TCHHHHHHHHHHHHH
T ss_pred             -CchhhHHHHHHHHHH
Confidence             345788888876655

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.23  E-value=2.7e-11  Score=87.05  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC----hHHHHHHh------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN----HESLVKAI------   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~~~~~~------   74 (157)
                      ++.+||||+++||.++|++|+++|++|++++|+......+..+.+...........+.|..+    .+.+.+++      
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999843210111223334445567777766643    33343333      


Q ss_pred             -cCcCEEEEcCCCcc
Q 040431           75 -KQVDVVISTVGHTL   88 (157)
Q Consensus        75 -~~~d~vv~~a~~~~   88 (157)
                       ..+|++|||||...
T Consensus        82 ~g~iDilvnnAG~~~   96 (266)
T d1mxha_          82 FGRCDVLVNNASAYY   96 (266)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCCEEEECCccCC
Confidence             26999999999754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.09  E-value=1.3e-09  Score=70.57  Aligned_cols=95  Identities=16%  Similarity=0.163  Sum_probs=73.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      |+|+|+|+ |.+|+.+++.|.+.|++|++++++     +++++.+.+..  ++.++.+|.+|++.+.++ ++++|.++-.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d-----~~~~~~~~~~~--~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDID-----KDICKKASAEI--DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHC--SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCC-----hhhhhhhhhhh--hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            58999996 999999999999999999999998     77776654432  578899999999999988 5789999976


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      .....  ....+...+++.+ .++++-
T Consensus        73 t~~d~--~N~~~~~~~k~~~-~~~iI~   96 (132)
T d1lssa_          73 TGKEE--VNLMSSLLAKSYG-INKTIA   96 (132)
T ss_dssp             CSCHH--HHHHHHHHHHHTT-CCCEEE
T ss_pred             CCcHH--HHHHHHHHHHHcC-CceEEE
Confidence            66542  2233444456666 666654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.03  E-value=1.6e-09  Score=77.27  Aligned_cols=66  Identities=27%  Similarity=0.231  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh--------c
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI--------K   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~--------~   75 (157)
                      ||.|+||||+++||++++++|++.|++|++++|+...                   ...|+.+.+......        .
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-------------------~~~d~~~~~~~~~~~~~~~~~~~~   61 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLSTAEGRKQAIADVLAKCSK   61 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-------------------EECCTTSHHHHHHHHHHHHTTCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-------------------HHHHhcCHHHHHHHHHHHHHHhCC
Confidence            5688999999999999999999999999999987321                   134666655544432        1


Q ss_pred             CcCEEEEcCCCcc
Q 040431           76 QVDVVISTVGHTL   88 (157)
Q Consensus        76 ~~d~vv~~a~~~~   88 (157)
                      ..|+++|+|+...
T Consensus        62 ~id~lv~~Ag~~~   74 (257)
T d1fjha_          62 GMDGLVLCAGLGP   74 (257)
T ss_dssp             CCSEEEECCCCCT
T ss_pred             CCcEEEEcCCCCC
Confidence            4899999998754

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.93  E-value=8.1e-10  Score=81.98  Aligned_cols=35  Identities=11%  Similarity=-0.007  Sum_probs=30.9

Q ss_pred             CCeEEEEc--CCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIG--GTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitG--atG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .+..||||  ++.+||.++++.|+++|.+|++..+..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~   38 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPP   38 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCch
Confidence            56889999  557999999999999999999988763

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=98.91  E-value=2.9e-09  Score=77.43  Aligned_cols=34  Identities=15%  Similarity=0.067  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCC--cchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTG--YIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG--~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .|+++||||+|  +||.+++++|+++|++|++.+|+
T Consensus         8 gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            58999999876  89999999999999999999886

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.85  E-value=3.4e-08  Score=66.08  Aligned_cols=90  Identities=19%  Similarity=0.264  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++|+|.|| |.+|++++++|.++|++|++++|+     .++++.+.+.. ........+..+.......+...|.++..
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~-----~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRT-----LESAKKLSAGV-QHSTPISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESC-----HHHHHHHHTTC-TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECC-----hHHHHHHHhcc-cccccccccccchhhhHhhhhccceeEee
Confidence            689999996 999999999999999999999999     77777665543 33555566777778888888888988877


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .....   .......+.+.+
T Consensus        75 ~~~~~---~~~~~~~~~~~~   91 (182)
T d1e5qa1          75 IPYTF---HATVIKSAIRQK   91 (182)
T ss_dssp             SCGGG---HHHHHHHHHHHT
T ss_pred             ccchh---hhHHHHHHHhhc
Confidence            65543   333444555544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.79  E-value=6e-08  Score=62.42  Aligned_cols=97  Identities=15%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      |+++|.|+ |.+|+++++.|.+.|++|++++.+     +++.+.+.   ......+.+|.++++.+.++ +.++|.+|-.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d-----~~~~~~~~---~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDIN-----EEKVNAYA---SYATHAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESC-----HHHHHHTT---TTCSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCc-----HHHHHHHH---HhCCcceeeecccchhhhccCCccccEEEEE
Confidence            47899985 999999999999999999999988     77665553   34567888999999999888 7789998877


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      .+...  ....++....+.....+++-..
T Consensus        72 ~~~~~--~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          72 IGANI--QASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             CCSCH--HHHHHHHHHHHHTTCSEEEEEC
T ss_pred             cCchH--HhHHHHHHHHHHcCCCcEEeec
Confidence            76542  2223333333333255655443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.60  E-value=8.4e-07  Score=57.88  Aligned_cols=99  Identities=18%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhcCCC-eEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFKNLG-VNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ||.|+||+|.+|++++..|...+.  +++.++.+     +.+.+.+. ..+.. ...... .....+..+.++++|+||.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~-----~~~~~a~D-l~~~~~~~~~~~-~~~~~~~~~~~~~aDivVi   74 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA-----HTPGVAAD-LSHIETRATVKG-YLGPEQLPDCLKGCDVVVI   74 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS-----SHHHHHHH-HTTSSSSCEEEE-EESGGGHHHHHTTCSEEEE
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc-----ccchhhHH-HhhhhhhcCCCe-EEcCCChHHHhCCCCEEEE
Confidence            899999999999999999998884  68888765     33333222 22211 111121 2235556677899999999


Q ss_pred             cCCCcc-------------hHHHHHHHHHHHHhcCCccEEEec
Q 040431           83 TVGHTL-------------LADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        83 ~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      .+|...             ....+.+++.+.+.+ ..-++.+.
T Consensus        75 tag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivv  116 (144)
T d1mlda1          75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICII  116 (144)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred             CCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEe
Confidence            999754             444777888888887 44454443

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.55  E-value=6.2e-07  Score=58.66  Aligned_cols=97  Identities=18%  Similarity=0.223  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhH----hhh--hcCCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQL----LDH--FKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~----~~~--~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      |.+.|||.|+|+ |++|..++..|+..|  .+++.++++     +++.+-    +.+  ...........|+.       
T Consensus         2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~-----~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-------   68 (146)
T d1ez4a1           2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVV-----KDRTKGDALDLEDAQAFTAPKKIYSGEYS-------   68 (146)
T ss_dssp             BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSS-----HHHHHHHHHHHHGGGGGSCCCEEEECCGG-------
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecc-----cchhHHHHHHHhccccccCCceEeeccHH-------
Confidence            666789999995 999999999999987  589999987     433321    111  11233445555542       


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      .++++|+||..+|...             ....+.+.+.+.+.+ ...++.+
T Consensus        69 ~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~-p~aiviv  119 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLV  119 (146)
T ss_dssp             GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred             HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCcEEEE
Confidence            2578999999998865             223556777777776 4444444

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=4.1e-07  Score=59.56  Aligned_cols=94  Identities=15%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-C---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-H---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |++|.|.||||++|+.+++.|+++. +   +++.+.++......  ..    .....+  ...++.+.+.    +.++|+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~--~~----~~~~~~--~~~~~~~~~~----~~~~Di   68 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA--PS----FGGTTG--TLQDAFDLEA----LKALDI   68 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC--CG----GGTCCC--BCEETTCHHH----HHTCSE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc--cc----ccCCce--eeecccchhh----hhcCcE
Confidence            4589999999999999999988864 2   56666555433211  10    111111  1222334332    468999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCc-cEEEecc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGAS-RGTLRTQ  113 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~-~~v~~Ss  113 (157)
                      +|.+++..   ....+.+.+.+.| .+ .+|-.||
T Consensus        69 vF~a~~~~---~s~~~~~~~~~~g-~~~~VID~Ss   99 (146)
T d1t4ba1          69 IVTCQGGD---YTNEIYPKLRESG-WQGYWIDAAS   99 (146)
T ss_dssp             EEECSCHH---HHHHHHHHHHHTT-CCCEEEECSS
T ss_pred             EEEecCch---HHHHhhHHHHhcC-CCeecccCCc
Confidence            99988664   4677888888887 32 3444444

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=3.5e-06  Score=55.09  Aligned_cols=100  Identities=17%  Similarity=0.247  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-HhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv   81 (157)
                      +.+|+|+|. |-+|..+++.|.+.|++|+++..+     +++.. ...+....++.++.+|.+|++.++++ +.++|.+|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d-----~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNL-----PEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECC-----CHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecc-----chhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEE
Confidence            347999996 899999999999999999999887     54432 33444566899999999999998877 56899999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      -.....  .....++..+++.+...+++-.
T Consensus        77 ~~~~~d--~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          77 ALSDND--ADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             ECSSCH--HHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EccccH--HHHHHHHHHHHHhCCCCceEEE
Confidence            877653  2334455556665424455443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.46  E-value=7.7e-08  Score=64.87  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=35.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      |||.|+||+|.+|+++++.|++.|++|++.+|+     +++++.+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~-----~e~~~~l   40 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR-----EEKAEAK   40 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS-----HHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHH
Confidence            589999999999999999999999999999998     5555433

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.41  E-value=1e-06  Score=59.02  Aligned_cols=90  Identities=16%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc-----CCCeEEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK-----NLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      .+||.|+|| |.+|.+++..|.+.|++|.+++|+     +++.+.+....     ...............++.+.++++|
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   74 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDID-----AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD   74 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence            378999996 999999999999999999999998     65555443321     1122222222222233566778899


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHh
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~  102 (157)
                      +||.......   ...+++.+...
T Consensus        75 ~iii~v~~~~---~~~~~~~i~~~   95 (184)
T d1bg6a2          75 VILIVVPAIH---HASIAANIASY   95 (184)
T ss_dssp             EEEECSCGGG---HHHHHHHHGGG
T ss_pred             EEEEEEchhH---HHHHHHHhhhc
Confidence            9998776654   44555555444

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=2.7e-07  Score=60.91  Aligned_cols=98  Identities=11%  Similarity=-0.019  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCC----cEEEEecCCCCCCCchhhHhh-hhc---CCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGH----PTFVLVRESTISGPSKSQLLD-HFK---NLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~----~v~~~~r~~~~~~~~~~~~~~-~~~---~~~v~~~~~D~~~~~~~~~   72 (157)
                      |++++||.|+||+|++|++++..|...+.    +.+.+.--..+...++.+.+. +..   ......+...    ....+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~   76 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEAT----DDPKV   76 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE----SCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccC----Cchhh
Confidence            77778999999999999999999988652    212221111111123333221 111   1223333332    22235


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHh
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEA  102 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~  102 (157)
                      .++++|+||..+|...             ....+.+.+.+.+.
T Consensus        77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~  119 (154)
T d1y7ta1          77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV  119 (154)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999876             33356666676665

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.39  E-value=4.2e-07  Score=61.37  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      ..+|+|+||+|.+|...++.....|.+|++++++     +++.+.+++.... ..+..-|-...+.+.+...  ++|+|+
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~-----~~~~~~~~~~Ga~-~vi~~~~~~~~~~~~~~~~~~Gvd~v~  103 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKIAYLKQIGFD-AAFNYKTVNSLEEALKKASPDGYDCYF  103 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCS-EEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCC-----HHHHHHHHhhhhh-hhcccccccHHHHHHHHhhcCCCceeE
Confidence            4689999999999999999999999999999988     7777666655322 2222222223333433333  699999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEecccccccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMSS  119 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~~  119 (157)
                      ++.|..   .....++++...   ++++.++....+..
T Consensus       104 D~vG~~---~~~~~~~~l~~~---G~~v~~G~~~~~~~  135 (182)
T d1v3va2         104 DNVGGE---FLNTVLSQMKDF---GKIAICGAISVYNR  135 (182)
T ss_dssp             ESSCHH---HHHHHGGGEEEE---EEEEECCCGGGTTC
T ss_pred             EecCch---hhhhhhhhccCC---CeEEeecceeeccc
Confidence            999853   233444444443   47888776665543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.5e-07  Score=62.10  Aligned_cols=96  Identities=11%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++++     +++.+.+++.....    ..|.++++..+++.+     ++|
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~-----~~~~~~~~~~Ga~~----vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGT-----EEGQKIVLQNGAHE----VFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCSE----EEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCEEEEEeccccccccccccccccCccccccccc-----ccccccccccCccc----ccccccccHHHHhhhhhccCCce
Confidence            4689999999999999999999999999999987     66666666553221    246666554444332     589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      ++++++|..   .....++.+...   ++++.++..
T Consensus       100 ~v~d~~g~~---~~~~~~~~l~~~---G~iv~~G~~  129 (174)
T d1yb5a2         100 IIIEMLANV---NLSKDLSLLSHG---GRVIVVGSR  129 (174)
T ss_dssp             EEEESCHHH---HHHHHHHHEEEE---EEEEECCCC
T ss_pred             EEeecccHH---HHHHHHhccCCC---CEEEEEecC
Confidence            999998853   233444444443   578887653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.9e-06  Score=56.23  Aligned_cols=99  Identities=14%  Similarity=0.128  Sum_probs=59.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHh-CC--CcEEEEecCCCCCCCchhhHhhhhcCCCeEEE-EccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVK-AG--HPTFVLVRESTISGPSKSQLLDHFKNLGVNLV-IGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~-~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~-~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |||.|+|++|.+|++++..|.. .+  .++..++..+ .. ......+.+... ..... ...-.+.    +.++++|+|
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~-~g~a~Dl~h~~~-~~~~~~~~~~~~~----~~~~~aDvv   73 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VT-PGVAVDLSHIPT-AVKIKGFSGEDAT----PALEGADVV   73 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-TH-HHHHHHHHTSCS-SCEEEEECSSCCH----HHHTTCSEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cc-hhHHHHHHCCcc-ccCCcEEEcCCCc----cccCCCCEE
Confidence            5899999999999999988754 34  6888887642 11 111111222111 11111 1111222    246799999


Q ss_pred             EEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           81 ISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        81 v~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      |..+|...             ....+.+.+.+.+.+ ...++.+
T Consensus        74 vitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aiviv  116 (145)
T d2cmda1          74 LISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGI  116 (145)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred             EECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEE
Confidence            99999865             334667777887776 4444433

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=1.9e-07  Score=62.99  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH---h--cCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA---I--KQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~---~--~~~d   78 (157)
                      ..+|+|+||+|.+|...++.+...|.+|++++++     +++.+.+++...   .. ..|..+++-.+++   .  +++|
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~-----~~~~~~l~~~Ga---~~-vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS-----DAKREMLSRLGV---EY-VGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHTTCC---SE-EEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecc-----cccccccccccc---cc-cccCCccCHHHHHHHHhCCCCEE
Confidence            4689999999999999999999999999999987     667776665532   22 2355554433333   3  2699


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      ++++++|..   .....++.++..   ++++.++.....
T Consensus        97 ~v~d~~g~~---~~~~~~~~l~~~---G~~v~~G~~~~~  129 (183)
T d1pqwa_          97 VVLNSLAGE---AIQRGVQILAPG---GRFIELGKKDVY  129 (183)
T ss_dssp             EEEECCCTH---HHHHHHHTEEEE---EEEEECSCGGGT
T ss_pred             EEEecccch---HHHHHHHHhcCC---CEEEEEccCCCC
Confidence            999999853   233344444332   578888655443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=3.9e-07  Score=61.06  Aligned_cols=95  Identities=16%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+|+|+||+|.+|+..++.+...|.+|++++++     +++.+.+++.....    ..|..+...-...-.++|+||++
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~-----~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR-----PEKLALPLALGAEE----AATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS-----GGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCEEEEEeccccchhhhhhhhccccccccccccc-----ccccccccccccce----eeehhhhhhhhhccccccccccc
Confidence            4689999999999999999999999999999887     55666555543221    12444433333334579999998


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .|..    ..+.++.++..   ++++.++..
T Consensus        99 ~G~~----~~~~~~~l~~~---G~~v~~G~~  122 (171)
T d1iz0a2          99 RGKE----VEESLGLLAHG---GRLVYIGAA  122 (171)
T ss_dssp             SCTT----HHHHHTTEEEE---EEEEEC---
T ss_pred             cchh----HHHHHHHHhcC---CcEEEEeCC
Confidence            8743    23344444333   478887643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.32  E-value=4.8e-06  Score=54.39  Aligned_cols=95  Identities=19%  Similarity=0.260  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhh----Hhh---hhcCCCeEEEEccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQ----LLD---HFKNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~----~~~---~~~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      .+||.|+|| |++|++++..|+..+.  ++..++++     +++++    .+.   .+....+.+...|.       +.+
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~-----~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l   72 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDAN-----ESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDC   72 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSS-----HHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGT
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeec-----cccccchhccHhhCccccCCCeEEEECCH-------HHh
Confidence            369999996 9999999999999874  79998887     44322    111   12233455555554       236


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      .++|+||..+|...             ....+.+.+.+.+.+....++.+
T Consensus        73 ~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivv  122 (148)
T d1ldna1          73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA  122 (148)
T ss_dssp             TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred             ccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence            78999999999866             33355667777777622334443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.30  E-value=2.2e-06  Score=56.70  Aligned_cols=86  Identities=21%  Similarity=0.292  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++|+|+|+ |.+|+.++++|.+.|. ++++..|.     .++++.+....+  ...     .+.+++.+.+..+|+||+
T Consensus        24 ~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt-----~~ka~~l~~~~~--~~~-----~~~~~~~~~l~~~Divi~   90 (159)
T d1gpja2          24 DKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRT-----YERAVELARDLG--GEA-----VRFDELVDHLARSDVVVS   90 (159)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSS-----HHHHHHHHHHHT--CEE-----CCGGGHHHHHHTCSEEEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCc-----HHHHHHHHHhhh--ccc-----ccchhHHHHhccCCEEEE
Confidence            678999996 9999999999999997 58888888     667665543322  221     244577788899999999


Q ss_pred             cCCCcchHHHHHHHH-HHHHh
Q 040431           83 TVGHTLLADQVKIIA-AIKEA  102 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~-~~~~~  102 (157)
                      +.+....-.....++ .+...
T Consensus        91 atss~~~ii~~~~i~~~~~~r  111 (159)
T d1gpja2          91 ATAAPHPVIHVDDVREALRKR  111 (159)
T ss_dssp             CCSSSSCCBCHHHHHHHHHHC
T ss_pred             ecCCCCccccHhhhHHHHHhc
Confidence            998765333344444 44443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=6.2e-07  Score=58.53  Aligned_cols=94  Identities=11%  Similarity=0.049  Sum_probs=58.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +|+|.|.||||++|+.+++-|.+++|   ++..+..+++..  .+.   . ...........+.       ..+.++|++
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G--k~i---~-~~~~~~~~~~~~~-------~~~~~~d~v   68 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG--QRM---G-FAESSLRVGDVDS-------FDFSSVGLA   68 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT--CEE---E-ETTEEEECEEGGG-------CCGGGCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC--cce---e-eccccchhccchh-------hhhccceEE
Confidence            68999999999999999999976543   677665443322  111   0 1111122222211       124578999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |.+++..   ....+...+.+.+  .++|-.|+..
T Consensus        69 f~a~p~~---~s~~~~~~~~~~g--~~VID~Ss~f   98 (144)
T d2hjsa1          69 FFAAAAE---VSRAHAERARAAG--CSVIDLSGAL   98 (144)
T ss_dssp             EECSCHH---HHHHHHHHHHHTT--CEEEETTCTT
T ss_pred             EecCCcc---hhhhhccccccCC--ceEEeechhh
Confidence            8877654   3667777777776  4677777643

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.28  E-value=9.8e-06  Score=52.70  Aligned_cols=92  Identities=24%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhh----Hhhh---hcCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQ----LLDH---FKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~----~~~~---~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |||.|+||+|.+|+.++..|+.++  .++..+++++.   ..+.+    .+.+   ....++.....--.|.+    .++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~---~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~----~l~   73 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS---INKLEGLREDIYDALAGTRSDANIYVESDENLR----IID   73 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG---HHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG----GGT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh---hHhhhcccccchhcccccccCCccccCCcchHH----Hhc
Confidence            589999999999999999999988  48888888732   12222    1221   11223333222112322    467


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~  103 (157)
                      ++|+||..||...             ....+.+++.+.+.+
T Consensus        74 ~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~  114 (145)
T d1hyea1          74 ESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC  114 (145)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC
Confidence            8999999999865             233556677777765

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.27  E-value=3e-06  Score=55.34  Aligned_cols=94  Identities=16%  Similarity=0.210  Sum_probs=57.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-C---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-H---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      |||.|.||||++|+.|++.|+++. |   ++..++.+....  ..    ..+......  ..+..+.    +.++++|++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g--k~----~~~~~~~~~--~~~~~~~----~~~~~~Dvv   68 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--PA----PNFGKDAGM--LHDAFDI----ESLKQLDAV   68 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS--BC----CCSSSCCCB--CEETTCH----HHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc--cc----cccCCccee--eecccch----hhhccccEE
Confidence            589999999999999999998754 3   555554443221  11    011111111  1122233    235789999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCc-cEEEeccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGAS-RGTLRTQK  114 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~-~~v~~Ss~  114 (157)
                      |.+.+..   .+..+.+.+.+.| .+ .+|=.|+.
T Consensus        69 F~alp~~---~s~~~~~~l~~~g-~~~~VIDlSsd   99 (147)
T d1mb4a1          69 ITCQGGS---YTEKVYPALRQAG-WKGYWIDAAST   99 (147)
T ss_dssp             EECSCHH---HHHHHHHHHHHTT-CCSEEEESSST
T ss_pred             EEecCch---HHHHHhHHHHHcC-CceEEEeCCcc
Confidence            9888765   4778888888887 43 46666663

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1e-06  Score=59.03  Aligned_cols=98  Identities=13%  Similarity=0.113  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~d   78 (157)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++     +++.+.+++....    ...|..+++-.+++.+     ++|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s-----~~k~~~~~~lGa~----~vi~~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGT-----AQKAQSALKAGAW----QVINYREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeecccc-----hHHHHHHHhcCCe----EEEECCCCCHHHHHHHHhCCCCeE
Confidence            4689999999999999999999999999999999     7777777666422    2246666544443332     589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      +++++++...   ....++.+...   ++++..+....
T Consensus       100 ~v~d~~g~~~---~~~~~~~l~~~---G~~v~~g~~~~  131 (179)
T d1qora2         100 VVYDSVGRDT---WERSLDCLQRR---GLMVSFGNSSG  131 (179)
T ss_dssp             EEEECSCGGG---HHHHHHTEEEE---EEEEECCCTTC
T ss_pred             EEEeCccHHH---HHHHHHHHhcC---CeeeecccccC
Confidence            9999998653   33344444333   46777655443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.22  E-value=3.1e-06  Score=55.28  Aligned_cols=95  Identities=17%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHH-HHhc---CcC
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLV-KAIK---QVD   78 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~~~~---~~d   78 (157)
                      .+++|.|.||.|.+|+++++.|.+.||+|.+.+|+...     ... .......+.+...++.....+. ++..   .-.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----~~~-~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~   81 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----VAE-SILANADVVIVSVPINLTLETIERLKPYLTENM   81 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----GHH-HHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTS
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----ccc-hhhhhccccccccchhhheeeeecccccccCCc
Confidence            35799999999999999999999999999999988432     211 1112334444555544333322 2222   234


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEE
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGT  109 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v  109 (157)
                      ++++.++...     .+.+.+.+.. ..+++
T Consensus        82 iiiD~~Svk~-----~~~~~~~~~~-~~~~v  106 (152)
T d2pv7a2          82 LLADLTSVKR-----EPLAKMLEVH-TGAVL  106 (152)
T ss_dssp             EEEECCSCCH-----HHHHHHHHHC-SSEEE
T ss_pred             eEEEecccCH-----HHHHHHHHHc-cCCEE
Confidence            6777766532     3445555543 34554

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.4e-06  Score=55.48  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      |||+|+|+ |.+|+.++..|.+.|++|.+++|++...     +...... ............+++    .+..+|+||..
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY-----CSVNLVETDGSIFNESLTANDPD----FLATSDLLLVT   70 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE-----EEEEEECTTSCEEEEEEEESCHH----HHHTCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh-----hhhccccCCccccccccccchhh----hhcccceEEEe
Confidence            58999997 9999999999999999999999985432     1111111 111111111122333    34578999998


Q ss_pred             CCCcchHHHHHHHHHHHHh
Q 040431           84 VGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~  102 (157)
                      .....   +..+++.+...
T Consensus        71 vka~~---~~~~~~~l~~~   86 (167)
T d1ks9a2          71 LKAWQ---VSDAVKSLAST   86 (167)
T ss_dssp             SCGGG---HHHHHHHHHTT
T ss_pred             ecccc---hHHHHHhhccc
Confidence            88765   44555555443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.21  E-value=1.1e-06  Score=59.21  Aligned_cols=99  Identities=13%  Similarity=0.200  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh-HHHHHHhc--CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH-ESLVKAIK--QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~~~~--~~d~v   80 (157)
                      ..+|||+||+|.+|...++-....|.+|++.+++     +++.+.+++.....+    .|..+. ++..+...  ++|+|
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s-----~~k~~~~~~lGa~~v----i~~~~~~~~~~~~~~~~gvD~v  102 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK-----AAEHDYLRVLGAKEV----LAREDVMAERIRPLDKQRWAAA  102 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC-----TTCHHHHHHTTCSEE----EECC---------CCSCCEEEE
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecCc-----hHHHHHHHhccccee----eecchhHHHHHHHhhccCcCEE
Confidence            3579999999999999999999999999999988     666666655533222    133221 22222222  69999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      +++.|...   ....++.++..   ++++.++..+..
T Consensus       103 id~vgg~~---~~~~l~~l~~~---Griv~~G~~~g~  133 (176)
T d1xa0a2         103 VDPVGGRT---LATVLSRMRYG---GAVAVSGLTGGA  133 (176)
T ss_dssp             EECSTTTT---HHHHHHTEEEE---EEEEECSCCSSS
T ss_pred             EEcCCchh---HHHHHHHhCCC---ceEEEeecccCc
Confidence            99999764   33344444443   588888776544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.19  E-value=1.5e-05  Score=52.73  Aligned_cols=97  Identities=21%  Similarity=0.229  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccC--CChHHHHHHhc-----C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV--LNHESLVKAIK-----Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~--~~~~~~~~~~~-----~   76 (157)
                      ..+|+|+| +|.+|...+..+...|.+|++++++     +++.+..+++... .. +..|-  .+.++..+.+.     +
T Consensus        27 g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~-----~~r~~~a~~~ga~-~~-~~~~~~~~~~~~~~~~~~~~~g~g   98 (170)
T d1e3ja2          27 GTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARS-----PRRLEVAKNCGAD-VT-LVVDPAKEEESSIIERIRSAIGDL   98 (170)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCS-EE-EECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCEEEEEc-ccccchhhHhhHhhhcccccccchH-----HHHHHHHHHcCCc-EE-EeccccccccchhhhhhhcccccC
Confidence            45899997 6999999999999999999999988     7777766665422 22 22222  34444444443     5


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +|++|.++|...  .....++.++.   .++++.++.
T Consensus        99 ~D~vid~~g~~~--~~~~a~~~~~~---~G~iv~~G~  130 (170)
T d1e3ja2          99 PNVTIDCSGNEK--CITIGINITRT---GGTLMLVGM  130 (170)
T ss_dssp             CSEEEECSCCHH--HHHHHHHHSCT---TCEEEECSC
T ss_pred             CceeeecCCChH--HHHHHHHHHhc---CCceEEEec
Confidence            899999998742  22333444443   357887764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=8.3e-06  Score=54.89  Aligned_cols=82  Identities=11%  Similarity=0.214  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHh-hhhc-CCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLL-DHFK-NLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~-~~~~-~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++|+|+|+ |+.|++++..|.+.|. ++++.+|+...  .++...+ +++. .........|+.+.+++.+.+..+|+|
T Consensus        18 ~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii   94 (182)
T d1vi2a1          18 GKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEF--FDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL   94 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTT--HHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHH--HHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence            578999995 8999999999999986 68888888432  1222221 2221 234556678899999999999999999


Q ss_pred             EEcCCCcc
Q 040431           81 ISTVGHTL   88 (157)
Q Consensus        81 v~~a~~~~   88 (157)
                      ||+.....
T Consensus        95 IN~Tp~G~  102 (182)
T d1vi2a1          95 TNGTKVGM  102 (182)
T ss_dssp             EECSSTTS
T ss_pred             ccccCCcc
Confidence            99987653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.15  E-value=2.4e-06  Score=56.26  Aligned_cols=99  Identities=19%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHh----hh---hcCCCeEEEEccCCChHHHHH
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLL----DH---FKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~----~~---~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      |++++||.|+|+ |.+|+.++..|...+ .++++++.+     +++++-.    .+   ..........     ....++
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~-----~~~~~g~a~Dl~~~~~~~~~~~~~~~-----~~~~~~   72 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVV-----KGMPEGKALDLSHVTSVVDTNVSVRA-----EYSYEA   72 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS-----SSHHHHHHHHHHHHHHHTTCCCCEEE-----ECSHHH
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEec-----cccchhHHHHHhhhccccCCeeEEec-----cCchhh
Confidence            345679999997 999999999888877 488888877     4343321    11   1111111111     112345


Q ss_pred             HhcCcCEEEEcCCCcc------------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           73 AIKQVDVVISTVGHTL------------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~------------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      .++++|+|+..+|...                  ....+.+++.+.+.+ ...++.+
T Consensus        73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aivii  128 (154)
T d1pzga1          73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIV  128 (154)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEE
Confidence            6789999999998643                  223666777777776 4444444

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.14  E-value=5.9e-06  Score=54.59  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |||.|.| .|.+|+.+++.|.+.|++|++++|+
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899998 5999999999999999999999988

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.13  E-value=8.4e-06  Score=54.78  Aligned_cols=102  Identities=16%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEe-cCCCCCCCchhhHh-hhhcC-CCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLV-RESTISGPSKSQLL-DHFKN-LGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~-r~~~~~~~~~~~~~-~~~~~-~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |++|.|.||||++|+.|++-|..+. .++..+. +.+.+....+.... ..+.. ....+...  .+.+   ....+.|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~dv   75 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM--SDVR---DFSADVDV   75 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE--SCGG---GTCTTCCE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccc--hhhh---hhhcccce
Confidence            5799999999999999999999984 4666554 33222212222211 11111 11222222  1111   12346899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      +|.+.+..   ....+.....+.+  .+++-.|+..
T Consensus        76 vf~alp~~---~s~~~~~~~~~~~--~~vIDlSadf  106 (179)
T d2g17a1          76 VFLATAHE---VSHDLAPQFLQAG--CVVFDLSGAF  106 (179)
T ss_dssp             EEECSCHH---HHHHHHHHHHHTT--CEEEECSSTT
T ss_pred             eeccccch---hHHHHhhhhhhcC--ceeecccccc
Confidence            99887764   3556667777765  4677777643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.11  E-value=1.5e-06  Score=58.57  Aligned_cols=100  Identities=17%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc-CC--CeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK-NL--GVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~--~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |+|.|.|| |..|.+++..|.++|++|++.+|..+   ++..+.+...+ +.  .......++.-.+++.++++++|+|+
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~---~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD---TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG---HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc---HHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhh
Confidence            58999995 99999999999999999999988522   22233332211 11  11111222334567888899999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      .......   .+.+++.+...-....++.+
T Consensus        77 ~avps~~---~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          77 LGVSTDG---VLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             ECSCGGG---HHHHHHHHTTTCCSCEEEEC
T ss_pred             cccchhh---hHHHHHhhccccccceeccc
Confidence            8777653   55566665554312334433

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.11  E-value=3e-05  Score=51.05  Aligned_cols=93  Identities=23%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhc----------CCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFK----------NLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----------~~~v~~~~~D~~~~~~~~~~   73 (157)
                      |++|.+.| .|.+|++++++|++.|++|.+.+|+     +++.+.+....          .....++..-+.+.+..+++
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~-----~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v   74 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLV-----QSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGL   74 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSS-----HHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHH
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECc-----hhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHH
Confidence            45899998 7999999999999999999999988     44443322111          01234444444555555555


Q ss_pred             hc----------CcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           74 IK----------QVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        74 ~~----------~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +.          .=+++++..... ...+..+.+.+.+.+
T Consensus        75 ~~~~~~~~~~l~~g~iiid~st~~-p~~~~~~~~~~~~~g  113 (162)
T d3cuma2          75 YLDDDGLLAHIAPGTLVLECSTIA-PTSARKIHAAARERG  113 (162)
T ss_dssp             HHSTTCHHHHSCTTCEEEECSCCC-HHHHHHHHHHHHHTT
T ss_pred             HhccccccccCCCCCEEEECCCCC-HHHHHHHHHHHHHCC
Confidence            43          224666655554 666777888888876

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=2.5e-05  Score=50.39  Aligned_cols=93  Identities=20%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHh----hh--hcCCCeEEEEccCCChHHHHHHhcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLL----DH--FKNLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~----~~--~~~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      |||.|+|+ |.+|+.++..|+.++  .++..++++     +++++-.    ..  ...........|.   +    .+++
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~-----~~~~~g~~~Dl~~~~~~~~~~~~~~~~~---~----~~~~   67 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVD-----KKRAEGDALDLIHGTPFTRRANIYAGDY---A----DLKG   67 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSS-----HHHHHHHHHHHHHHGGGSCCCEEEECCG---G----GGTT
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecc-----cccccchhccccccccccccccccCCcH---H----HhcC
Confidence            58999996 999999999998887  479888877     4333311    11  1122334444333   2    3578


Q ss_pred             cCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           77 VDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +|+||..||...             ....+.+++.+.+.+ ...++.+
T Consensus        68 adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aiviv  114 (140)
T d1a5za1          68 SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIV  114 (140)
T ss_dssp             CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             CCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEE
Confidence            999999999865             333566777777776 3334443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.10  E-value=1.9e-05  Score=51.11  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhHhhhhc-CCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQLLDHFK-NLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +||.|+|+ |.+|+.++..|+.++.  ++..++++......+..++..-.. ........+|   .+    .++++|+||
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~~----~~~~adivv   73 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---YS----DVKDCDVIV   73 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---GG----GGTTCSEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---HH----HhCCCceEE
Confidence            58999997 9999999999999874  799999885543222222111111 1223333332   22    367899999


Q ss_pred             EcCCCcc-------------hHHHHHHHHHHHHhc
Q 040431           82 STVGHTL-------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        82 ~~a~~~~-------------~~~~~~l~~~~~~~~  103 (157)
                      ..||...             ....+.+++.+.+.+
T Consensus        74 itag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~  108 (142)
T d1y6ja1          74 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY  108 (142)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EecccccCcCcchhHHhhHHHHHHHHHHHHhhccC
Confidence            9999876             333556777777775

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.07  E-value=4.8e-06  Score=57.04  Aligned_cols=77  Identities=23%  Similarity=0.353  Sum_probs=48.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCC----CeE------EEEccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNL----GVN------LVIGDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~----~v~------~~~~D~~~~~~~~~~~   74 (157)
                      |||.|.| .|++|..++..|++.|++|++++.+     +++.+.+.....+    ...      .....+.-..++.+++
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n-----~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i   74 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS-----STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAV   74 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC-----HHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHH
Confidence            5899998 6999999999999999999999987     5554443321110    000      0000111122344556


Q ss_pred             cCcCEEEEcCCCc
Q 040431           75 KQVDVVISTVGHT   87 (157)
Q Consensus        75 ~~~d~vv~~a~~~   87 (157)
                      +.+|+++.+.+..
T Consensus        75 ~~~d~i~i~VpTP   87 (202)
T d1mv8a2          75 LDSDVSFICVGTP   87 (202)
T ss_dssp             HTCSEEEECCCCC
T ss_pred             hhCCEEEEecCcc
Confidence            6789998888763

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=3.4e-06  Score=48.96  Aligned_cols=44  Identities=20%  Similarity=0.313  Sum_probs=37.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF   52 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~   52 (157)
                      ..+|+|+||+|.+|...++.+...|++|++++++     +++.+.++++
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s-----~~k~~~~~~l   75 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR-----ESTHEYLKSL   75 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC-----GGGHHHHHHH
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC-----HHHHHHHHHC
Confidence            4689999999999999999999999999999998     7776666543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.05  E-value=6.8e-06  Score=53.21  Aligned_cols=87  Identities=17%  Similarity=0.094  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhHhh-------hhcCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQLLD-------HFKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |||.|+|| |.+|+.++..|+..+  .++..++++     +++.+...       ........+...  .|.+    .++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~-----~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~----~~~   68 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVV-----EGIPQGKALDMYESGPVGLFDTKVTGS--NDYA----DTA   68 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSS-----SSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGG----GGT
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccc-----cccchhhhhhhhcccchhcccceEEec--CCHH----Hhc
Confidence            58999996 999999999999987  589999888     43332111       111223333322  2222    357


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~  103 (157)
                      ++|++|..+|...             ....+.+++.+.+.+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~  109 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS  109 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC
Confidence            8999999999765             333566777777776

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.05  E-value=9.5e-07  Score=60.19  Aligned_cols=81  Identities=15%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC-----CCeEEEEccCCChHHHHHHhc
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN-----LGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      |++|+||.|.|| |..|.+++..|.+.|++|++..|+     ++..+.+.+...     +++.+ .-++.-..++.++++
T Consensus         4 ~~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~-----~~~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~   76 (189)
T d1n1ea2           4 LLYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMN-----EEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYN   76 (189)
T ss_dssp             CCCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSC-----HHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHT
T ss_pred             cceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEec-----HHHHHHHhhccccccccccccc-ccccccchhhhhccC
Confidence            444778999995 888999999999999999999988     666554433211     12211 112222234677788


Q ss_pred             CcCEEEEcCCCcc
Q 040431           76 QVDVVISTVGHTL   88 (157)
Q Consensus        76 ~~d~vv~~a~~~~   88 (157)
                      ++|.||.......
T Consensus        77 ~ad~iiiavPs~~   89 (189)
T d1n1ea2          77 GAEIILFVIPTQF   89 (189)
T ss_dssp             TCSCEEECSCHHH
T ss_pred             CCCEEEEcCcHHH
Confidence            9999988765543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.02  E-value=2.2e-05  Score=50.77  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=57.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhh----Hhhh--hcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQ----LLDH--FKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~----~~~~--~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      ||.|+||+|.+|+.++..|+.++.  ++.+++.+..   ++..+    .+.+  ...........|+.       .++++
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~---~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-------~~~~a   71 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDK---EDDTVGQAADTNHGIAYDSNTRVRQGGYE-------DTAGS   71 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGG---HHHHHHHHHHHHHHHTTTCCCEEEECCGG-------GGTTC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCc---ccccceeecchhhcccccCCceEeeCCHH-------Hhhhc
Confidence            799999999999999999999984  6888775321   11211    1211  11334455555442       25789


Q ss_pred             CEEEEcCCCcc-------------hHHHHHHHHHHHHhc
Q 040431           78 DVVISTVGHTL-------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        78 d~vv~~a~~~~-------------~~~~~~l~~~~~~~~  103 (157)
                      |+||..||...             ....+.+.+.+.+.+
T Consensus        72 DiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~  110 (142)
T d1o6za1          72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN  110 (142)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC
Confidence            99999999765             223556666666665

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=3.4e-05  Score=50.97  Aligned_cols=75  Identities=15%  Similarity=0.236  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+|+|.|+ |.+|...++.+...|.++++++++     +++.+..+++...    ...|..+++......+++|++|.+
T Consensus        31 G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~-----~~~~~~a~~lGad----~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          31 GKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTS-----EAKREAAKALGAD----EVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS-----GGGHHHHHHHTCS----EEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCEEEEecc-chHHHHHHHHhhcccccchhhccc-----hhHHHHHhccCCc----EEEECchhhHHHHhcCCCceeeee
Confidence            468999985 899999999998899999998887     6666666555432    224667777666666789999999


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      +|...
T Consensus       101 ~g~~~  105 (168)
T d1uufa2         101 VAAPH  105 (168)
T ss_dssp             CSSCC
T ss_pred             eecch
Confidence            98753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.01  E-value=2.8e-05  Score=51.08  Aligned_cols=92  Identities=22%  Similarity=0.185  Sum_probs=56.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC----------CCeEEEEccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN----------LGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----------~~v~~~~~D~~~~~~~~~~~   74 (157)
                      |||.|.| .|.+|+.+++.|++.|++|++.+|+     +++.+.+.+...          .+.+++-.-+.+++.+++.+
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~-----~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~   74 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRN-----PEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVA   74 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCC-----cchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            5899999 6999999999999999999999988     555554432110          12233333344555555544


Q ss_pred             c----------CcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           75 K----------QVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        75 ~----------~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .          .-+++|+..... ....+.+.+.+.+.+
T Consensus        75 ~~~~~~~~~~~~g~iiid~sT~~-p~~~~~~~~~~~~~g  112 (161)
T d1vpda2          75 LGENGIIEGAKPGTVLIDMSSIA-PLASREISDALKAKG  112 (161)
T ss_dssp             HSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHHTTT
T ss_pred             hCCcchhhccCCCCEEEECCCCC-HHHHHHHHHHHHHcC
Confidence            1          123555554443 444555666665554

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.2e-06  Score=59.11  Aligned_cols=98  Identities=18%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-CcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-QVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~~d~vv~~   83 (157)
                      .+|+|+||+|.+|...++-....|.+|++++++     +++.+.++++..   +.+ .|..+.+..+.+.+ ..|.+|++
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~-----~~k~~~~~~lGa---d~v-i~~~~~~~~~~l~~~~~~~vvD~  103 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR-----ESTHEYLKSLGA---SRV-LPRDEFAESRPLEKQVWAGAIDT  103 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC-----GGGHHHHHHHTE---EEE-EEGGGSSSCCSSCCCCEEEEEES
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecc-----hhHHHHHHhhcc---ccc-cccccHHHHHHHHhhcCCeeEEE
Confidence            379999999999999999999999999999998     777766665532   221 23333222222222 46899998


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      ++...   ....++.+..   .++++.++....+
T Consensus       104 Vgg~~---~~~~l~~l~~---~Griv~~G~~~~~  131 (177)
T d1o89a2         104 VGDKV---LAKVLAQMNY---GGCVAACGLAGGF  131 (177)
T ss_dssp             SCHHH---HHHHHHTEEE---EEEEEECCCTTCS
T ss_pred             cchHH---HHHHHHHhcc---ccceEeecccCCc
Confidence            87532   2233333333   2588888766543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=7.4e-06  Score=55.01  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=55.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHh-hhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLL-DHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      |++|.|.||||++|+.|++.|.++. .++..+..++..  ..+.... ...    .........+.+.   +..++|++|
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a--G~~i~~~~p~~----~~~~~~~~~~~~~---~~~~~dvvf   71 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA--GKKLEEIFPST----LENSILSEFDPEK---VSKNCDVLF   71 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT--TSBHHHHCGGG----CCCCBCBCCCHHH---HHHHCSEEE
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC--CCcccccCchh----hccccccccCHhH---hccccceEE
Confidence            5699999999999999999998875 366666543222  2222211 111    1111122234443   345789999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      ...+...   ...++.   +.. ..++|=+|+.--+
T Consensus        72 ~a~p~~~---s~~~~~---~~~-~~~VIDlSadfRl  100 (176)
T d1vkna1          72 TALPAGA---SYDLVR---ELK-GVKIIDLGADFRF  100 (176)
T ss_dssp             ECCSTTH---HHHHHT---TCC-SCEEEESSSTTTC
T ss_pred             EccccHH---HHHHHH---hhc-cceEEecCccccc
Confidence            8777753   223332   222 3467777764433

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=3.5e-05  Score=46.00  Aligned_cols=84  Identities=21%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++|+|.|. |..|.++++.|.+.|++|++.+.+....   ..+.+    ...+.+..... +.+    .+.++|.||-.
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~---~~~~~----~~~~~~~~~~~-~~~----~~~~~d~vi~S   71 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKL----PEAVERHTGSL-NDE----WLMAADLIVAS   71 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCT---TGGGS----CTTSCEEESBC-CHH----HHHHCSEEEEC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCch---hHHHH----hhccceeeccc-chh----hhccCCEEEEC
Confidence            578999996 8899999999999999999999764422   11111    22344444443 222    34678999999


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .|...   ...++..+++.|
T Consensus        72 PGi~~---~~~~~~~a~~~g   88 (93)
T d2jfga1          72 PGIAL---AHPSLSAAADAG   88 (93)
T ss_dssp             TTSCT---TSHHHHHHHHTT
T ss_pred             CCCCC---CCHHHHHHHHcC
Confidence            99875   345777777776

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=9.8e-06  Score=53.93  Aligned_cols=74  Identities=15%  Similarity=0.144  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++|+|.|+ |+.+++++..|.+.|.+|++++|+     .++.+.+.+...........+..+.+     ...+|+|||+
T Consensus        18 ~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt-----~~ka~~l~~~~~~~~~~~~~~~~~~~-----~~~~dliIN~   86 (170)
T d1nyta1          18 GLRILLIGA-GGASRGVLLPLLSLDCAVTITNRT-----VSRAEELAKLFAHTGSIQALSMDELE-----GHEFDLIINA   86 (170)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS-----HHHHHHHHHHTGGGSSEEECCSGGGT-----TCCCSEEEEC
T ss_pred             CCEEEEECC-cHHHHHHHHHhcccceEEEeccch-----HHHHHHHHHHHhhccccccccccccc-----ccccceeecc
Confidence            578999995 899999999999999999999998     77776554432221122223332221     2468999998


Q ss_pred             CCCcc
Q 040431           84 VGHTL   88 (157)
Q Consensus        84 a~~~~   88 (157)
                      .....
T Consensus        87 Tp~G~   91 (170)
T d1nyta1          87 TSSGI   91 (170)
T ss_dssp             CSCGG
T ss_pred             cccCc
Confidence            87754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.96  E-value=2.9e-05  Score=51.21  Aligned_cols=87  Identities=18%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhh----Hhhh---hcCCCeEEEEccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQ----LLDH---FKNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~----~~~~---~~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      .+||.|+|+ |.+|+.++..|...|.  ++..++++     +++++    .+.+   +..........|+.+       +
T Consensus        20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~-----~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~-------~   86 (160)
T d1i0za1          20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVL-----EDKLKGEMMDLQHGSLFLQTPKIVADKDYSV-------T   86 (160)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC-----HHHHHHHHHHHHHTGGGCCCSEEEECSSGGG-------G
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEec-----cchhHHHHHHHhccccccCCCeEEeccchhh-------c
Confidence            469999996 9999999999999984  78888877     33332    1111   112222223333322       5


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~  103 (157)
                      +++|+||..||...             ....+.+.+.+.+.+
T Consensus        87 ~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~  128 (160)
T d1i0za1          87 ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS  128 (160)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcC
Confidence            78999999999876             333566777777776

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.94  E-value=3.9e-06  Score=55.15  Aligned_cols=94  Identities=15%  Similarity=-0.042  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCCCCCchhhHhhh----hcCCCeEEEEccCCChHHH
Q 040431            2 ASKSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTISGPSKSQLLDH----FKNLGVNLVIGDVLNHESL   70 (157)
Q Consensus         2 ~~~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~~~   70 (157)
                      |.++||.|+||+|.+|++++..|+..+-       +++.++.+..   .++++.+..    ........+..- .+   .
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~-~~---~   73 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM---MGVLDGVLMELQDCALPLLKDVIAT-DK---E   73 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG---HHHHHHHHHHHHHTCCTTEEEEEEE-SC---H
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc---hhhhhhhhhhhcccccccccccccC-cc---c
Confidence            3478999999999999999999986541       2333333311   233332211    111122222221 12   2


Q ss_pred             HHHhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHh
Q 040431           71 VKAIKQVDVVISTVGHTL-------------LADQVKIIAAIKEA  102 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~  102 (157)
                      .+.++++|+||-.+|...             ....+.+.+.+.+.
T Consensus        74 ~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~  118 (154)
T d5mdha1          74 EIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY  118 (154)
T ss_dssp             HHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence            356789999999999866             33355666666664

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.93  E-value=0.00012  Score=48.61  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      +.+|.|.| .|.+|.+++++|++.|++|++.+|+     +++.+.+
T Consensus         2 ~~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~-----~~~~~~l   41 (176)
T d2pgda2           2 QADIALIG-LAVMGQNLILNMNDHGFVVCAFNRT-----VSKVDDF   41 (176)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS-----THHHHHH
T ss_pred             CCcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCC-----HHHHHHH
Confidence            56899999 6999999999999999999999998     6665544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.92  E-value=2.1e-05  Score=51.20  Aligned_cols=32  Identities=16%  Similarity=0.198  Sum_probs=29.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |||.|.| .|.+|+++++.|+++|++|++.++.
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~   32 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEG   32 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred             CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCc
Confidence            5899998 7999999999999999999888766

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=1.4e-06  Score=58.12  Aligned_cols=97  Identities=16%  Similarity=0.187  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC--hHHHHHHh-cCcCEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN--HESLVKAI-KQVDVVI   81 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~~~~-~~~d~vv   81 (157)
                      .+|||+||+|.+|...++.....|.+|+.++++     +++.+.++++....+    .|..+  .+.+...- ++.|+|+
T Consensus        25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s-----~~k~~~~~~lGad~v----i~~~~~~~~~~~~~~~~gvd~vi   95 (167)
T d1tt7a2          25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN-----REAADYLKQLGASEV----ISREDVYDGTLKALSKQQWQGAV   95 (167)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS-----SSTHHHHHHHTCSEE----EEHHHHCSSCCCSSCCCCEEEEE
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCCceEEEecC-----HHHHHHHHhhcccce----EeccchhchhhhcccCCCceEEE
Confidence            469999999999999999988889999999998     777777766643222    12211  11111111 2589999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      ++.|...   ....++.+...   .+++.++..+.
T Consensus        96 d~vgg~~---~~~~~~~l~~~---G~iv~~G~~~g  124 (167)
T d1tt7a2          96 DPVGGKQ---LASLLSKIQYG---GSVAVSGLTGG  124 (167)
T ss_dssp             ESCCTHH---HHHHHTTEEEE---EEEEECCCSSC
T ss_pred             ecCcHHH---HHHHHHHhccC---ceEEEeeccCC
Confidence            9998752   22334444332   47887776543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=7.8e-06  Score=55.22  Aligned_cols=100  Identities=19%  Similarity=0.185  Sum_probs=57.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChH---HHHHHhc-CcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHE---SLVKAIK-QVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~~-~~d~v   80 (157)
                      .+|+|+||+|.+|+..++.....|.++++.+.++    +++...+.......   ...|..+++   .+.++.. ++|+|
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~----~e~~~~l~~~~gad---~vi~~~~~~~~~~~~~~~~~GvDvv  104 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT----QEKCLFLTSELGFD---AAVNYKTGNVAEQLREACPGGVDVY  104 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS----HHHHHHHHHHSCCS---EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccch----HHHHhhhhhcccce---EEeeccchhHHHHHHHHhccCceEE
Confidence            5799999999999999999988998765544331    44443333222222   233444332   2333322 69999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEecccccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKM  117 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~  117 (157)
                      +++.|..   ...+.++.+...   ++++.++.++.|
T Consensus       105 ~D~vGg~---~~~~~~~~l~~~---G~iv~~G~~s~~  135 (187)
T d1vj1a2         105 FDNVGGD---ISNTVISQMNEN---SHIILCGQISQY  135 (187)
T ss_dssp             EESSCHH---HHHHHHTTEEEE---EEEEEC------
T ss_pred             EecCCch---hHHHHhhhcccc---ccEEEecccccc
Confidence            9999843   233344444332   588888776654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.00013  Score=48.10  Aligned_cols=97  Identities=15%  Similarity=0.127  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~   77 (157)
                      ..+|+|.|+ |.+|...+..+...|. +|++++++     +.+++..+++...  .++..+-.+..+..+.+.     ++
T Consensus        27 gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~-----~~rl~~a~~~Ga~--~~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          27 GHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLS-----ATRLSKAKEIGAD--LVLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCS--EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCEEEEECC-CccHHHHHHHHHHcCCceEEeccCC-----HHHHHHHHHhCCc--ccccccccccccccccccccCCCCc
Confidence            458999986 9999999999999998 68888888     7777766655321  233344455555555443     68


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      |++|.++|...  .....++.++.   .+++++++.
T Consensus        99 Dvvid~~G~~~--~~~~a~~~~~~---gG~iv~~G~  129 (171)
T d1pl8a2          99 EVTIECTGAEA--SIQAGIYATRS---GGTLVLVGL  129 (171)
T ss_dssp             SEEEECSCCHH--HHHHHHHHSCT---TCEEEECSC
T ss_pred             eEEEeccCCch--hHHHHHHHhcC---CCEEEEEec
Confidence            99999999742  22233333433   357888764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.91  E-value=6.4e-05  Score=47.44  Aligned_cols=86  Identities=20%  Similarity=0.294  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH-hcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA-IKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-~~~~d~vv~~   83 (157)
                      ++++|.|. |-+|+.+++.|  ++++|.++..+     +++.+.+   ...++.++.+|.++++.++++ +.+++.++-+
T Consensus         1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d-----~~~~~~~---~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~   69 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLREL--RGSEVFVLAED-----ENVRKKV---LRSGANFVHGDPTRVSDLEKANVRGARAVIVN   69 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTS--CGGGEEEEESC-----TTHHHHH---HHTTCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcc-----hHHHHHH---HhcCccccccccCCHHHHHHhhhhcCcEEEEe
Confidence            46899995 88899999998  46788888877     5555443   334789999999999998876 5689999976


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ....  .....++..+++.+
T Consensus        70 ~~~d--~~n~~~~~~~r~~~   87 (129)
T d2fy8a1          70 LESD--SETIHCILGIRKID   87 (129)
T ss_dssp             CSSH--HHHHHHHHHHHHHC
T ss_pred             ccch--hhhHHHHHHHHHHC
Confidence            6553  33444555566665

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.91  E-value=9.4e-05  Score=47.92  Aligned_cols=93  Identities=24%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhH----hhh---hcCCCeEEEEccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQL----LDH---FKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~----~~~---~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      +||.|+|+ |++|+.++..|+.+|  .+++.++++     +++++-    +.+   ...........|.   +    .++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~-----~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~---~----~l~   68 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDAN-----EAKVKADQIDFQDAMANLEAHGNIVINDW---A----ALA   68 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSS-----HHHHHHHHHHHHHHGGGSSSCCEEEESCG---G----GGT
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecc-----cchhhhHHHhhhccccccCCccceeccCH---H----Hhc
Confidence            68999995 999999999999887  478888877     444321    111   1223344444443   2    257


Q ss_pred             CcCEEEEcCCCcc-----------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           76 QVDVVISTVGHTL-----------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        76 ~~d~vv~~a~~~~-----------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ++|+||..||...                 ....+.+.+.+.+.+ ..-++.+
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aiviv  120 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVV  120 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEE
Confidence            8999999999643                 222555666666665 3334443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.89  E-value=1.7e-05  Score=53.08  Aligned_cols=93  Identities=11%  Similarity=0.005  Sum_probs=54.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---C----cEEEEecCCCCCCCchhhHhh-hhcC---CCeEEEEccCCChHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---H----PTFVLVRESTISGPSKSQLLD-HFKN---LGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~----~v~~~~r~~~~~~~~~~~~~~-~~~~---~~v~~~~~D~~~~~~~~~   72 (157)
                      ..||.|+||+|.||++++..|+...   .    ++..++.+..   ...++-+. +..+   .....+..- ++   ..+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~---~~~l~g~~mdl~d~a~~~~~~~~~~-~~---~~~   96 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS---FQALEGVAMELEDSLYPLLREVSIG-ID---PYE   96 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG---HHHHHHHHHHHHTTTCTTEEEEEEE-SC---HHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc---cchhcchhhhhcccccccccCcccc-cc---chh
Confidence            3489999999999999999998743   2    3334443311   12222221 1111   122222111 22   345


Q ss_pred             HhcCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc
Q 040431           73 AIKQVDVVISTVGHTL-------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        73 ~~~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~  103 (157)
                      .++++|+||..+|...             ....+.+.+++.+..
T Consensus        97 ~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a  140 (175)
T d7mdha1          97 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA  140 (175)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC
Confidence            6789999999999876             333566667777753

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.88  E-value=1.1e-05  Score=52.77  Aligned_cols=67  Identities=21%  Similarity=0.233  Sum_probs=47.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      |||.+.| +|.+|+++++.|++.|+++++.+|+     +++.+.+.+....  .+    ..+   ..++++++|+||-+.
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~-----~~~~~~l~~~~g~--~~----~~~---~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSS-----LERSKEIAEQLAL--PY----AMS---HQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSS-----HHHHHHHHHHHTC--CB----CSS---HHHHHHTCSEEEECS
T ss_pred             CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcCh-----HHhHHhhccccce--ee----ech---hhhhhhccceeeeec
Confidence            5899998 6999999999999999999999888     6666655332221  11    012   344456778777666


Q ss_pred             CC
Q 040431           85 GH   86 (157)
Q Consensus        85 ~~   86 (157)
                      -+
T Consensus        66 kp   67 (152)
T d2ahra2          66 KP   67 (152)
T ss_dssp             CG
T ss_pred             ch
Confidence            54

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.88  E-value=3.8e-05  Score=50.84  Aligned_cols=98  Identities=15%  Similarity=0.228  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+++|.|| |..|..-++.....|.+|++++.+     .++++.++.....+++..   ..+.+.+.+.++.+|+||..
T Consensus        32 pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~-----~~~l~~l~~~~~~~~~~~---~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          32 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDIN-----VERLSYLETLFGSRVELL---YSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHGGGSEEE---ECCHHHHHHHHHTCSEEEEC
T ss_pred             CcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCc-----HHHHHHHHHhhcccceee---hhhhhhHHHhhccCcEEEEe
Confidence            458999995 999999999999999999999998     777777776655555544   35788899999999999999


Q ss_pred             CCCcc----hHHHHHHHHHHHHhcCCccEEEecc
Q 040431           84 VGHTL----LADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        84 a~~~~----~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +-...    .-.++.+++.|+.-.   -+|=++-
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GS---VIVDvai  133 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGS---VIVDVAV  133 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTC---EEEETTC
T ss_pred             eecCCcccCeeecHHHHhhcCCCc---EEEEeec
Confidence            88765    222455555555432   3444443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=2.8e-05  Score=52.06  Aligned_cols=94  Identities=14%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC--ChHHHHH-Hhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL--NHESLVK-AIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~--~~~~~~~-~~~----   75 (157)
                      ..+|+|+|+ |.+|...+..+...|. +|++++++     +++.+..+++.. . .+  .|..  +..+..+ +.+    
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~-----~~~~~~a~~lGa-~-~v--i~~~~~~~~~~~~~i~~~~~~   98 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGS-----PNRLKLAEEIGA-D-LT--LNRRETSVEERRKAIMDITHG   98 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESC-----HHHHHHHHHTTC-S-EE--EETTTSCHHHHHHHHHHHTTT
T ss_pred             CCEEEEECC-Cccchhheecccccccccccccccc-----cccccccccccc-e-EE--EeccccchHHHHHHHHHhhCC
Confidence            368999996 9999999999999997 69999888     777776666532 1 12  2333  3222222 222    


Q ss_pred             -CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           76 -QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        76 -~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                       ++|+||.++|...  .....++.++..   ++++.++
T Consensus        99 ~g~Dvvid~vG~~~--~~~~a~~~l~~~---G~iv~~G  131 (182)
T d1vj0a2          99 RGADFILEATGDSR--ALLEGSELLRRG---GFYSVAG  131 (182)
T ss_dssp             SCEEEEEECSSCTT--HHHHHHHHEEEE---EEEEECC
T ss_pred             CCceEEeecCCchh--HHHHHHHHhcCC---CEEEEEe
Confidence             5899999998753  223344444443   4777775

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=2.2e-05  Score=51.71  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhh----Hhhh---hcCCCeEEEEccCCChHHHHHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQ----LLDH---FKNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~----~~~~---~~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      ..||.|+|+ |.+|..++..|...|.  ++..++++     +++++    .+.+   +..........|+.       .+
T Consensus        19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~-----~~~a~g~alDl~~~~~~~~~~~~~~~~d~~-------~~   85 (159)
T d2ldxa1          19 RCKITVVGV-GDVGMACAISILLKGLADELALVDAD-----TDKLRGEALDLQHGSLFLSTPKIVFGKDYN-------VS   85 (159)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSC-----HHHHHHHHHHHHHTTTTCSCCEEEEESSGG-------GG
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC-----chhhhccHHHHhCcchhcCCCeEEeccchh-------hh
Confidence            458999996 9999999999999984  79888877     44332    1111   11222223334432       24


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhc
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~  103 (157)
                      .++|+||..||...             ....+.+.+.+.+.+
T Consensus        86 ~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~  127 (159)
T d2ldxa1          86 ANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS  127 (159)
T ss_dssp             TTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence            68999999999865             333555666666665

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.82  E-value=0.00024  Score=45.77  Aligned_cols=94  Identities=16%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCCCCCCCchhhH----hhhh--cCCCeEEEEccCCChHHHHHHhcC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRESTISGPSKSQL----LDHF--KNLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~----~~~~--~~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      .||.|+|+ |++|++++..|+.++.  ++..++++     +++++-    +.+-  ......+...  .+.+    .+++
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~-----~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~----~~~d   69 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIA-----KERVEAEVLDMQHGSSFYPTVSIDGS--DDPE----ICRD   69 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSS-----HHHHHHHHHHHHHTGGGSTTCEEEEE--SCGG----GGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEec-----cccchhHHHHHHhccccCCCceeecC--CCHH----HhhC
Confidence            58999996 9999999999999884  79988877     443321    1111  1122333222  1222    2568


Q ss_pred             cCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           77 VDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        77 ~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +|+||..||...             ....+.+.+.+.+.+ ...++.+
T Consensus        70 aDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~iv  116 (143)
T d1llda1          70 ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYML  116 (143)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred             CcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEE
Confidence            999999999876             333556667777776 3334333

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.81  E-value=2.3e-05  Score=50.71  Aligned_cols=93  Identities=17%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCCCCCCchhhH----hhh---hcCCCeEEEE-ccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRESTISGPSKSQL----LDH---FKNLGVNLVI-GDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~----~~~---~~~~~v~~~~-~D~~~~~~~~~~~   74 (157)
                      |||.|+|+ |.+|.+++..|+.+|  .++..++++     +++++-    +.+   ..+....... .|+   +    .+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~-----~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~----~~   67 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIA-----EDLAVGEAMDLAHAAAGIDKYPKIVGGADY---S----LL   67 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSS-----HHHHHHHHHHHHHHHHTTTCCCEEEEESCG---G----GG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecc-----cchhhHHHHHHhhhccccCCCCccccCCCH---H----Hh
Confidence            58999996 999999999999887  479888877     444321    111   1122223332 233   2    46


Q ss_pred             cCcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           75 KQVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        75 ~~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +++|+||..||...             ....+.+.+.+.+.+ ...++.+
T Consensus        68 ~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aiviv  116 (142)
T d1ojua1          68 KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILV  116 (142)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEE
T ss_pred             ccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEE
Confidence            78999999999755             223455666666665 3344444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.77  E-value=0.00039  Score=42.68  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++++|+|| |.+|..-++.|++.|.+|++++....    +....+  ....++..+.-++.+.+     +.+.+.|+..
T Consensus        12 ~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~----~~~~~~--~~~~~i~~~~~~~~~~d-----l~~~~lv~~a   79 (113)
T d1pjqa1          12 DRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI----PQFTVW--ANEGMLTLVEGPFDETL-----LDSCWLAIAA   79 (113)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC----HHHHHH--HTTTSCEEEESSCCGGG-----GTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC----hHHHHH--HhcCCceeeccCCCHHH-----hCCCcEEeec
Confidence            679999995 99999999999999999999875532    112111  12346777777765433     5678888865


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .+..  .....+...+++.+   .+|++..
T Consensus        80 t~d~--~~n~~i~~~a~~~~---ilVNv~D  104 (113)
T d1pjqa1          80 TDDD--TVNQRVSDAAESRR---IFCNVVD  104 (113)
T ss_dssp             CSCH--HHHHHHHHHHHHTT---CEEEETT
T ss_pred             CCCH--HHHHHHHHHHHHcC---CEEEeCC
Confidence            5543  34457778888876   5777754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=1.5e-05  Score=53.18  Aligned_cols=72  Identities=21%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC--CCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN--LGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++++|.|+ |+.+++++..|.+.+.+|+++.|+     .++++.+.+...  .++.....|-.+       +..+|+||
T Consensus        18 ~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~-----~~~a~~l~~~~~~~~~~~~~~~~~~~-------~~~~diiI   84 (171)
T d1p77a1          18 NQHVLILGA-GGATKGVLLPLLQAQQNIVLANRT-----FSKTKELAERFQPYGNIQAVSMDSIP-------LQTYDLVI   84 (171)
T ss_dssp             TCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESS-----HHHHHHHHHHHGGGSCEEEEEGGGCC-------CSCCSEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHcccCceeeeccch-----HHHHHHHHHHHhhccccchhhhcccc-------ccccceee
Confidence            568999995 888999999999988899999999     777765544322  234444443221       35789999


Q ss_pred             EcCCCcc
Q 040431           82 STVGHTL   88 (157)
Q Consensus        82 ~~a~~~~   88 (157)
                      |+.+...
T Consensus        85 N~tp~g~   91 (171)
T d1p77a1          85 NATSAGL   91 (171)
T ss_dssp             ECCCC--
T ss_pred             ecccccc
Confidence            9988764

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=0.00011  Score=50.83  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             CCeEEEEcC----------------CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh
Q 040431            4 KSKILFIGG----------------TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGa----------------tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   67 (157)
                      .++||||+|                ||..|.+|++++...|++|+++.-.....           .+..+..+..  ...
T Consensus         6 g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~-----------~p~~~~~~~~--~t~   72 (223)
T d1u7za_           6 HLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP-----------TPPFVKRVDV--MTA   72 (223)
T ss_dssp             TCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC-----------CCTTEEEEEC--CSH
T ss_pred             CCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC-----------ccccccccee--hhh
Confidence            578888876                79999999999999999999887654322           1234555544  344


Q ss_pred             HHHH----HHhcCcCEEEEcCCCcc
Q 040431           68 ESLV----KAIKQVDVVISTVGHTL   88 (157)
Q Consensus        68 ~~~~----~~~~~~d~vv~~a~~~~   88 (157)
                      +++.    +.++..|++|+.|+...
T Consensus        73 ~~m~~~~~~~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          73 LEMEAAVNASVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             HHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             HHHHHHHHhhhccceeEeeeechhh
Confidence            4443    44468999999999976

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=5.3e-05  Score=50.03  Aligned_cols=97  Identities=19%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC-ChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL-NHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~~~~d~vv~   82 (157)
                      ..+|+|.|+ |.+|...+..+...|.+|++++++     +++.+..+++.. + .+  .|.. +.+..++...+.|.++.
T Consensus        28 g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~-----~~k~~~a~~lGa-~-~~--i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          28 GKKVGIVGL-GGIGSMGTLISKAMGAETYVISRS-----SRKREDAMKMGA-D-HY--IATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESS-----STTHHHHHHHTC-S-EE--EEGGGTSCHHHHSCSCEEEEEE
T ss_pred             CCEEEEECC-CCcchhHHHHhhhccccccccccc-----hhHHHHhhccCC-c-EE--eeccchHHHHHhhhcccceEEE
Confidence            468999986 999999998888889999999998     667766665532 1 11  2332 33444455567999999


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      +.+..........++.++..   ++++.++-
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~---G~iv~~G~  125 (168)
T d1piwa2          98 CASSLTDIDFNIMPKAMKVG---GRIVSISI  125 (168)
T ss_dssp             CCSCSTTCCTTTGGGGEEEE---EEEEECCC
T ss_pred             EecCCccchHHHHHHHhhcc---ceEEEecc
Confidence            87765311111222233332   47777753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.70  E-value=0.00019  Score=47.56  Aligned_cols=39  Identities=23%  Similarity=0.250  Sum_probs=34.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      |||.|.| .|.+|.+++++|++.|++|++.+|+     +++.+.+
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~-----~~~~~~l   40 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRT-----YSKSEEF   40 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS-----HHHHHHH
T ss_pred             CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECC-----HHHHHHH
Confidence            5799999 7999999999999999999999988     6666544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.00013  Score=45.01  Aligned_cols=85  Identities=11%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv   81 (157)
                      ..||.|.| +|.+|+-++....+.|+++++++.+++..  ..        ...-.++.+|+.|.+.+.++..  ++|+|-
T Consensus        11 ~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~P--A~--------~va~~~i~~~~~d~~~l~~~~~~~~~DviT   79 (111)
T d1kjqa2          11 ATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAP--AM--------HVAHRSHVINMLDGDALRRVVELEKPHYIV   79 (111)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCG--GG--------GGSSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCc--hh--------hcCCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence            35899999 59999999999999999999998875431  10        1123678899999999988875  579997


Q ss_pred             EcCCCcchHHHHHHHHHHHHhc
Q 040431           82 STVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .-.-...    ...++.+.+.+
T Consensus        80 ~E~EnI~----~~~L~~le~~g   97 (111)
T d1kjqa2          80 PEIEAIA----TDMLIQLEEEG   97 (111)
T ss_dssp             ECSSCSC----HHHHHHHHHTT
T ss_pred             EEecCcC----HHHHHHHHHCC
Confidence            5554443    34555555554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.68  E-value=5.5e-05  Score=50.37  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh---HHHHHHhc--Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH---ESLVKAIK--QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~~--~~   77 (157)
                      ..+|+|.|+ |.+|...+..+...|. +|++++++     +++.+..+++...  .  ..|..+.   +.+.++..  ++
T Consensus        28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~-----~~r~~~a~~lGa~--~--~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          28 GSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSR-----PICVEAAKFYGAT--D--ILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCC-----HHHHHHHHHHTCS--E--EECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEEcC-Ccchhhhhhhhhcccccccccccch-----hhhHHHHHhhCcc--c--cccccchhHHHHHHHHhhccCc
Confidence            458999985 9999999999998896 68888877     6776666555321  1  2344433   33333332  59


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      |++|.++|...  ...+.++.++..   ++++.++-
T Consensus        98 D~vid~~g~~~--~~~~a~~~~~~~---G~iv~~G~  128 (174)
T d1jqba2          98 DRVIMAGGGSE--TLSQAVKMVKPG---GIISNINY  128 (174)
T ss_dssp             EEEEECSSCTT--HHHHHHHHEEEE---EEEEECCC
T ss_pred             ceEEEccCCHH--HHHHHHHHHhcC---CEEEEEee
Confidence            99999999754  123334444332   57777753

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.9e-05  Score=52.27  Aligned_cols=91  Identities=20%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhC-CCcEE-EEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKA-GHPTF-VLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~-g~~v~-~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +++||.|.|++|.+|+.+++.+.+. +.++. +++|.....-......+......++.+ .-      ++.++++.+|++
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~-~~------~~~~~~~~~DVi   75 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QS------SLDAVKDDFDVF   75 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ES------CSTTTTTSCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee-ec------cHHHHhcccceE
Confidence            3679999999999999999999886 45655 344443221111111100000111111 11      222345678888


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      |.+..+.   .+...++.+.+.+
T Consensus        76 IDFs~p~---~~~~~~~~a~~~~   95 (162)
T d1diha1          76 IDFTRPE---GTLNHLAFCRQHG   95 (162)
T ss_dssp             EECSCHH---HHHHHHHHHHHTT
T ss_pred             EEeccHH---HHHHHHHHHHhcc
Confidence            8886664   4667777777776

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.67  E-value=5.7e-05  Score=50.79  Aligned_cols=96  Identities=15%  Similarity=0.127  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhH-hhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQL-LDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +.||.|.||||++|+.|++.|.++.+ ++..+..++..  ..+... ........      +..........+.++|++|
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~a--G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~Dvvf   76 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKA--GEQFGSVFPHLITQD------LPNLVAVKDADFSNVDAVF   76 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTT--TSCHHHHCGGGTTSC------CCCCBCGGGCCGGGCSEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccC--CCccccccccccccc------cccchhhhhhhhcccceee
Confidence            56899999999999999999998753 66666533222  112211 11111111      1111111222345789999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .......   ...++..+.+.   ..++..|+
T Consensus        77 ~alp~~~---s~~~~~~l~~~---~~~v~~~~  102 (183)
T d2cvoa1          77 CCLPHGT---TQEIIKGLPQE---LKIVDLSA  102 (183)
T ss_dssp             ECCSSSH---HHHHHHTSCSS---CEEEECSS
T ss_pred             eccccch---HHHHHHHHHhc---Ccccccch
Confidence            8877763   34444444333   24455554

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=0.00012  Score=46.40  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVL   34 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~   34 (157)
                      |||.|.|++|..|+.+++.+.+.++++...
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            589999999999999999999999987654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.65  E-value=0.00013  Score=46.97  Aligned_cols=93  Identities=16%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhh-h------hcCCCeEEE-EccCCChHHHHHHhc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLD-H------FKNLGVNLV-IGDVLNHESLVKAIK   75 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~-~------~~~~~v~~~-~~D~~~~~~~~~~~~   75 (157)
                      +||.|+|+ |.+|+.++-.|+.++ .++..++.+     +++.+-.. +      .......+. ..|+.+       ++
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~-----~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-------~~   68 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIV-----EGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-------TA   68 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSS-----SSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-------GT
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeec-----cccchhHHHHhhccccccCCCCEEEecCcHHH-------hc
Confidence            68999996 999999999998877 488888877     33322111 1      112223332 233322       46


Q ss_pred             CcCEEEEcCCCcc-------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           76 QVDVVISTVGHTL-------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        76 ~~d~vv~~a~~~~-------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ++|+||..||...             ....+.+++.+.+.+ ...++.+
T Consensus        69 ~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aiviv  116 (142)
T d1uxja1          69 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIM  116 (142)
T ss_dssp             TCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEE
T ss_pred             CCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEE
Confidence            7999999999865             222456666666665 3334333

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.65  E-value=7e-05  Score=49.37  Aligned_cols=96  Identities=11%  Similarity=0.095  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-----Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-----QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-----~~   77 (157)
                      ..+|+|+|++|.+|...+..+...| .+|++.+++     +++.+.++++...  .+  .|..+++..++..+     ++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~-----~~~~~~~~~~Ga~--~~--i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR-----EEAVEAAKRAGAD--YV--INASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS-----HHHHHHHHHHTCS--EE--EETTTSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccc-----hhhHHHHHHcCCc--ee--eccCCcCHHHHHHHHhhcccc
Confidence            3589999999999999999998888 478888888     7777766665322  22  23444433333332     58


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      |++|+++|...  .....++.++..   ++++.++.
T Consensus        99 d~vid~~g~~~--~~~~a~~~l~~~---G~iv~~G~  129 (170)
T d1jvba2          99 DAVIDLNNSEK--TLSVYPKALAKQ---GKYVMVGL  129 (170)
T ss_dssp             EEEEESCCCHH--HHTTGGGGEEEE---EEEEECCS
T ss_pred             hhhhcccccch--HHHhhhhhcccC---CEEEEecc
Confidence            99999998742  111222233322   47777753

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.64  E-value=0.00018  Score=46.93  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=52.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      +|.|.||||++|+.|++.|.++.+   ++..++.+++..  .+      .....-.....+..+.     .+.+.|.++.
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G--~~------~~~~~~~~~~~~~~~~-----~~~~~d~~f~   69 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG--KS------LKFKDQDITIEETTET-----AFEGVDIALF   69 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT--CE------EEETTEEEEEEECCTT-----TTTTCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc--cc------ccccCCcccccccchh-----hhhhhhhhhh
Confidence            799999999999999999988864   333333221111  00      0011111111222221     2346788888


Q ss_pred             cCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           83 TVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      .++..   .+..+...+.+.+  .++|=.|+.-
T Consensus        70 ~~~~~---~s~~~~~~~~~~~--~~VIDlSsdf   97 (154)
T d2gz1a1          70 SAGSS---TSAKYAPYAVKAG--VVVVDNTSYF   97 (154)
T ss_dssp             CSCHH---HHHHHHHHHHHTT--CEEEECSSTT
T ss_pred             ccCcc---chhhHHhhhcccc--ceehhcChhh
Confidence            77764   3556666666665  4677777643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.60  E-value=7.4e-05  Score=49.22  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~   37 (157)
                      |++|+|.| .|.+|..+++.|.+.|+  +|++++++
T Consensus         1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            45799998 69999999999999996  57777776

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.50  E-value=5.1e-05  Score=51.08  Aligned_cols=104  Identities=12%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             CeEEE-EcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEE-EccCCCh-HHHHHHh----cCc
Q 040431            5 SKILF-IGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV-IGDVLNH-ESLVKAI----KQV   77 (157)
Q Consensus         5 ~~ili-tGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~-~~D~~~~-~~~~~~~----~~~   77 (157)
                      .+++| .||+|.+|...++-....|.+|++++|++... .++.+.++++....+... ..|..+. +.+.+..    .++
T Consensus        30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~-~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~v  108 (189)
T d1gu7a2          30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNL-DEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA  108 (189)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTH-HHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCE
T ss_pred             CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccccc-chHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCCc
Confidence            45666 58999999999999988899999999875432 333444444432211111 1122221 2233332    258


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecccc
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKG  115 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~  115 (157)
                      |+++++.|...   ....++.+...   ++++.++..+
T Consensus       109 dvv~D~vg~~~---~~~~~~~l~~~---G~~v~~G~~~  140 (189)
T d1gu7a2         109 KLALNCVGGKS---STGIARKLNNN---GLMLTYGGMS  140 (189)
T ss_dssp             EEEEESSCHHH---HHHHHHTSCTT---CEEEECCCCS
T ss_pred             eEEEECCCcch---hhhhhhhhcCC---cEEEEECCcc
Confidence            99999988543   34445554333   5788876543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.48  E-value=0.00011  Score=48.45  Aligned_cols=67  Identities=19%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      .++|+|.|+ |+.+++++..|.+.|. +|.+++|+     .++.+.+.+..+  ...+  +-.+       ...+|+|||
T Consensus        17 ~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~-----~~ka~~L~~~~~--~~~~--~~~~-------~~~~DliIN   79 (167)
T d1npya1          17 NAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARN-----VKTGQYLAALYG--YAYI--NSLE-------NQQADILVN   79 (167)
T ss_dssp             TSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSC-----HHHHHHHHHHHT--CEEE--SCCT-------TCCCSEEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeccc-----HHHHHHHHHhhh--hhhh--hccc-------ccchhhhee
Confidence            568999995 9999999999999995 79999998     777776654332  1111  1111       135799998


Q ss_pred             cCCCc
Q 040431           83 TVGHT   87 (157)
Q Consensus        83 ~a~~~   87 (157)
                      +....
T Consensus        80 aTpiG   84 (167)
T d1npya1          80 VTSIG   84 (167)
T ss_dssp             CSSTT
T ss_pred             ccccC
Confidence            76654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.47  E-value=0.00024  Score=47.04  Aligned_cols=95  Identities=12%  Similarity=0.118  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEE-EEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHH---Hhc-CcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTF-VLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVK---AIK-QVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~-~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~---~~~-~~d   78 (157)
                      ..+|+|.|+ |.+|...+..+...|.+++ +.+++     +++.+..+++...  ++  .|..+++..++   +.. ++|
T Consensus        29 g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~-----~~k~~~a~~~Ga~--~~--i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          29 ASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIV-----ESRLELAKQLGAT--HV--INSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESC-----HHHHHHHHHHTCS--EE--EETTTSCHHHHHHHHTTSCEE
T ss_pred             CCEEEEeCC-CHHHhhhhhcccccccceeeeeccH-----HHHHHHHHHcCCe--EE--EeCCCcCHHHHHHHHcCCCCc
Confidence            458999986 9999999999988888655 45555     6677776666422  22  34444333333   222 589


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++|.+.|...  .....++.++.   .++++.++.
T Consensus        99 ~vid~~G~~~--~~~~~~~~~~~---~G~i~~~G~  128 (174)
T d1f8fa2          99 FALESTGSPE--ILKQGVDALGI---LGKIAVVGA  128 (174)
T ss_dssp             EEEECSCCHH--HHHHHHHTEEE---EEEEEECCC
T ss_pred             EEEEcCCcHH--HHHHHHhcccC---ceEEEEEee
Confidence            9999999753  11222333333   257887764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.45  E-value=7.7e-05  Score=51.49  Aligned_cols=37  Identities=24%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |.+.++|+|+|| |..|...|..|.++|++|+++.|+.
T Consensus         3 ~~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            344679999996 9999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=5.7e-05  Score=51.16  Aligned_cols=105  Identities=10%  Similarity=0.223  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh--------hhhcCCCe-----------EEEEccC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL--------DHFKNLGV-----------NLVIGDV   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~--------~~~~~~~v-----------~~~~~D~   64 (157)
                      -++|.|.|| |.+|+.++..++..|++|+++++++     +.++..        ......+.           ......+
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~-----~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i   77 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTE-----DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTI   77 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH-----HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTE
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECCh-----HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhc
Confidence            479999996 9999999999999999999999884     332211        10000000           0000011


Q ss_pred             CChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           65 LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        65 ~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                      ....++.+++.++|.|+-++.-. ...-+.++..+.+.- .+.-++.|+.+.
T Consensus        78 ~~~~d~~~a~~~ad~ViEav~E~-l~~K~~v~~~l~~~~-~~~~ilasnTS~  127 (192)
T d1f0ya2          78 ATSTDAASVVHSTDLVVEAIVEN-LKVKNELFKRLDKFA-AEHTIFASNTSS  127 (192)
T ss_dssp             EEESCHHHHTTSCSEEEECCCSC-HHHHHHHHHHHTTTS-CTTCEEEECCSS
T ss_pred             cccchhHhhhcccceehhhcccc-hhHHHHHHHHHhhhc-ccCceeeccCcc
Confidence            11223445667889988876653 444556666666653 445556655443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.39  E-value=0.00099  Score=44.64  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=27.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |||.|.| .|++|..++..| ++|++|++++-+
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din   31 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDIL   31 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSC
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECC
Confidence            5899998 799999999755 579999999877

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.39  E-value=0.00028  Score=45.79  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHh----h---hhcCCCeEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLL----D---HFKNLGVNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~----~---~~~~~~v~~~~~D~~~~~~~~~~~~   75 (157)
                      ..||.|+|+ |.+|+.++..|...+ .++.+++++     +++++-.    .   .+...+..+...+  +.+    .++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~-----~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~----~~~   70 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIV-----KNMPHGKALDTSHTNVMAYSNCKVSGSN--TYD----DLA   70 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSS-----SSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGG----GGT
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEecc-----CCcceeeecchhhhccccCCCcEEEecc--ccc----ccC
Confidence            569999995 999999998887776 478888887     4333211    1   1122233333322  222    357


Q ss_pred             CcCEEEEcCCCcc------------------hHHHHHHHHHHHHhcCCccEEEe
Q 040431           76 QVDVVISTVGHTL------------------LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        76 ~~d~vv~~a~~~~------------------~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ++|+|+..+|...                  ....+.+++.+.+.+ ...++.+
T Consensus        71 ~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aiviv  123 (150)
T d1t2da1          71 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIV  123 (150)
T ss_dssp             TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred             CCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEE
Confidence            8999999999653                  223556677777776 4444444

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.39  E-value=0.00016  Score=48.63  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHH------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKA------   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~------   73 (157)
                      -++|.|.|| |.+|+.++..++..|++|++++++     ++.++..    ......   ........+......      
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~-----~~~l~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~~~i~~   74 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDIN-----EHGIEQGLAEAAKLLVG---RVDKGRMTPAKMAEVLNGIRP   74 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSS-----HHHHHHHHHHHHHHHHH---HHTTTSSCHHHHHHHHHHEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECC-----HHHHhhhhhhhhhhHHh---hhcccccchhhhhhhhceeec
Confidence            368999996 999999999999999999999998     4332211    100000   000001111112111      


Q ss_pred             ------hcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccc
Q 040431           74 ------IKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGK  116 (157)
Q Consensus        74 ------~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~  116 (157)
                            +.++|.|+-++.- ....-+.++..+.+.- .+..|+.|+.+.
T Consensus        75 ~~~~~~~~~adlViEav~E-~l~~K~~lf~~l~~~~-~~~~IiaSnTS~  121 (186)
T d1wdka3          75 TLSYGDFGNVDLVVEAVVE-NPKVKQAVLAEVENHV-REDAILASNTST  121 (186)
T ss_dssp             ESSSTTGGGCSEEEECCCS-CHHHHHHHHHHHHTTS-CTTCEEEECCSS
T ss_pred             ccccccccccceeeeeecc-hHHHHHHHHHHHHhhc-CCCeeEEecccc
Confidence                  3468999985444 4666667887777765 455556655444

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.36  E-value=0.00045  Score=41.32  Aligned_cols=86  Identities=22%  Similarity=0.186  Sum_probs=55.4

Q ss_pred             CCCCCeEEEEcCCCcch-HHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            1 MASKSKILFIGGTGYIG-KFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         1 M~~~~~ilitGatG~iG-~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      |...++|.+.|- |++| ++||+.|.+.|++|...++..    ....+.+.   ..++.+..++-  ++    .+.++|.
T Consensus         5 ~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~----~~~~~~L~---~~Gi~v~~g~~--~~----~i~~~d~   70 (96)
T d1p3da1           5 MRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIAD----GVVTQRLA---QAGAKIYIGHA--EE----HIEGASV   70 (96)
T ss_dssp             CTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCC----SHHHHHHH---HTTCEEEESCC--GG----GGTTCSE
T ss_pred             chhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCC----ChhhhHHH---HCCCeEEECCc--cc----cCCCCCE
Confidence            344678999994 5666 778999999999999988763    22233332   23566655433  22    2357899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      ||...++...+   .-+..+++.|
T Consensus        71 vV~S~AI~~~n---pel~~A~~~g   91 (96)
T d1p3da1          71 VVVSSAIKDDN---PELVTSKQKR   91 (96)
T ss_dssp             EEECTTSCTTC---HHHHHHHHTT
T ss_pred             EEECCCcCCCC---HHHHHHHHcC
Confidence            99888876422   2344556655

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.34  E-value=0.00084  Score=44.79  Aligned_cols=98  Identities=16%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-hcCCCeEEEEccCCCh------HHHHHHhcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-FKNLGVNLVIGDVLNH------ESLVKAIKQ   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~------~~~~~~~~~   76 (157)
                      .+++.|.| .|.||+.+++.+...|.+|+..+|............+.+ +...++..+.+.+++.      ++..+.+ +
T Consensus        42 gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~m-k  119 (181)
T d1qp8a1          42 GEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM-A  119 (181)
T ss_dssp             TCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTS-C
T ss_pred             CceEEEec-cccccccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeeec-c
Confidence            57899999 699999999999999999999988754321111111222 2233444444444321      1111122 2


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .+.++-|++...+.....+++++.+..
T Consensus       120 ~~ailIN~~RG~ivd~~aL~~aL~~~~  146 (181)
T d1qp8a1         120 EDAVFVNVGRAEVLDRDGVLRILKERP  146 (181)
T ss_dssp             TTCEEEECSCGGGBCHHHHHHHHHHCT
T ss_pred             ccceEEeccccccccchhhhhhcccCc
Confidence            344555555555555666777666643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=0.0006  Score=44.47  Aligned_cols=95  Identities=13%  Similarity=0.067  Sum_probs=59.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~~~d~v   80 (157)
                      ..+|+|.|+ |.+|...+..+...|.+|++++++     +++.+..+++...  .+  .|..+.+.   +.+...+.+.+
T Consensus        28 g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~-----~~~~~~a~~~Ga~--~~--i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          28 GQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID-----DAKLELARKLGAS--LT--VNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCS--EE--EETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCEEEEeec-cccHHHHHHHHHHcCCccceecch-----hhHHHhhhccCcc--cc--ccccchhHHHHHHHhhcCCccc
Confidence            468999885 999999999998899999999988     7777766655321  22  24444333   33333456666


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      |.+++...  .....++.++.   .++++.++-
T Consensus        98 i~~~~~~~--~~~~~~~~l~~---~G~iv~~G~  125 (166)
T d1llua2          98 LVTAVSNS--AFGQAIGMARR---GGTIALVGL  125 (166)
T ss_dssp             EECCSCHH--HHHHHHTTEEE---EEEEEECCC
T ss_pred             ccccccch--HHHHHHHHhcC---CcEEEEEEe
Confidence            66665532  22223333332   257777753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.23  E-value=0.0019  Score=42.64  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhc--CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIK--QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~--~~d~   79 (157)
                      ..+|+|+|+ |.+|...+..+...|. +|++++++     +++++..+++... ..+-.-|-.+ .+.+.+...  ++|+
T Consensus        30 g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~-----~~kl~~Ak~~GA~-~~in~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          30 GSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLN-----KDKFEKAMAVGAT-ECISPKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC-----GGGHHHHHHHTCS-EEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCEEEEECC-CchhHHHHHHHHHcCCceEEEecCc-----HHHHHHHHhcCCc-EEECccccchHHHHHHHHhccccceE
Confidence            357999985 9999999999999995 79999988     7788776666432 1111122222 233333332  6999


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcC-CccEEEecc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEG-ASRGTLRTQ  113 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~-~~~~v~~Ss  113 (157)
                      +|.+.+...     .+..++..... .++++.++.
T Consensus       103 vi~~~g~~~-----~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         103 TFEVIGHLE-----TMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             EEECSCCHH-----HHHHHHTTSCTTTCEEEECSC
T ss_pred             EEEeCCchH-----HHHHHHHHhhcCCeEEEEEEc
Confidence            999999853     22333322211 368888764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.17  E-value=0.00065  Score=45.34  Aligned_cols=92  Identities=12%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEE-----------------cc--C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI-----------------GD--V   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~-----------------~D--~   64 (157)
                      .-+|+|+|| |..|..-++.....|.+|.+++.+     +++.+.+++.....+....                 -+  .
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~-----~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~  102 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVR-----AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  102 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC-----STTHHHHHHTTCEECCC-----------------------C
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEecc-----HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence            358999996 999999999999999999999998     6666666554332221100                 01  1


Q ss_pred             CChHHHHHHhcCcCEEEEcCCCcc----hHHHHHHHHHHHH
Q 040431           65 LNHESLVKAIKQVDVVISTVGHTL----LADQVKIIAAIKE  101 (157)
Q Consensus        65 ~~~~~~~~~~~~~d~vv~~a~~~~----~~~~~~l~~~~~~  101 (157)
                      .+.+.+.+.++++|+||-.+-...    .-.++.+++.|+.
T Consensus       103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~  143 (183)
T d1l7da1         103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKP  143 (183)
T ss_dssp             CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCT
T ss_pred             HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCC
Confidence            235667777889999999887765    2224455555544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.15  E-value=0.00017  Score=46.68  Aligned_cols=41  Identities=24%  Similarity=0.464  Sum_probs=34.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhh
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDH   51 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~   51 (157)
                      |+|.+.|+ |.+|+++++.|++.| ++|++.+|+     +++.+.+.+
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~-----~~~~~~l~~   42 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRG-----AEKRERLEK   42 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSS-----HHHHHHHHH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCC-----hhHHHHhhh
Confidence            58999985 999999999999887 899999988     666665543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.15  E-value=1.2e-05  Score=53.74  Aligned_cols=39  Identities=18%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL   49 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (157)
                      .++++|.|+ |+.+++++..|.+.| +|+++.|+     .++++.+
T Consensus        18 ~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~-----~~ka~~l   56 (177)
T d1nvta1          18 DKNIVIYGA-GGAARAVAFELAKDN-NIIIANRT-----VEKAEAL   56 (177)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSS-----HHHHHHH
T ss_pred             CCEEEEECC-cHHHHHHHHHHcccc-ceeeehhh-----hhHHHHH
Confidence            578999994 889999999997766 89999998     7776654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.11  E-value=0.0013  Score=43.17  Aligned_cols=77  Identities=14%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-hHHHHHHhc--CcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-HESLVKAIK--QVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~--~~d~   79 (157)
                      ..+|+|.|+ |.+|...+..+...|. +|++++++     +++.+...+.... -.+...|..+ .+...+...  ++|+
T Consensus        29 GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~-----~~k~~~a~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~G~D~  101 (176)
T d2jhfa2          29 GSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDIN-----KDKFAKAKEVGAT-ECVNPQDYKKPIQEVLTEMSNGGVDF  101 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC-----GGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCc-----HHHHHHHHHhCCe-eEEecCCchhHHHHHHHHHhcCCCCE
Confidence            458999998 6789999999999885 78888888     7777665555321 1111112212 222222322  6999


Q ss_pred             EEEcCCCc
Q 040431           80 VISTVGHT   87 (157)
Q Consensus        80 vv~~a~~~   87 (157)
                      +|.+.|..
T Consensus       102 vid~~G~~  109 (176)
T d2jhfa2         102 SFEVIGRL  109 (176)
T ss_dssp             EEECSCCH
T ss_pred             EEecCCch
Confidence            99999985

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.06  E-value=0.0011  Score=43.36  Aligned_cols=74  Identities=15%  Similarity=0.105  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCC-ChHHHHHHh-----cC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL-NHESLVKAI-----KQ   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~-----~~   76 (157)
                      ..+|+|.|+ |.+|...+..+...|.. |++.+++     +++.+..+++....  +  .|.. +.+.+.+.+     .+
T Consensus        29 G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~-----~~k~~~ak~lGa~~--~--i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          29 GSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDIN-----KDKFARAKEFGATE--C--INPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC-----GGGHHHHHHHTCSE--E--ECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCEEEEecc-hhHHHHHHHHHHHHhcCceEEEccc-----HHHHHHHHHhCCcE--E--EeCCchhhHHHHHHHHHcCCC
Confidence            458999997 67899999999888965 5566555     66776666664321  1  2232 122233222     26


Q ss_pred             cCEEEEcCCCc
Q 040431           77 VDVVISTVGHT   87 (157)
Q Consensus        77 ~d~vv~~a~~~   87 (157)
                      +|++|.++|..
T Consensus        99 ~D~vid~~G~~  109 (176)
T d2fzwa2          99 VDYSFECIGNV  109 (176)
T ss_dssp             BSEEEECSCCH
T ss_pred             CcEeeecCCCH
Confidence            99999999875

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0024  Score=41.27  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~   37 (157)
                      |++|.|.|+||-||....+-+.+..  ++|..++=+
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            5689999999999999999887764  678877654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.05  E-value=0.0011  Score=41.05  Aligned_cols=36  Identities=25%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      +++++|.|| |++|-.++..|.+.|.+|+++.+...-
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            478999995 999999999999999999999988653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.04  E-value=0.0014  Score=44.32  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|.|.| .|.||+.+++.|...|.+|++.++..
T Consensus        43 gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          43 DQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCeEEEec-ccccchhHHHhHhhhcccccccCccc
Confidence            57899999 79999999999999999999887653

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.04  E-value=0.0028  Score=40.90  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~   37 (157)
                      +++|.|.|+||-||....+-+.+..  ++|+.++=.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence            6899999999999999988887763  678877654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.00051  Score=42.34  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      +++++|.|| |++|-.++..|.+.|.+|+++.|.+.
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            478999995 99999999999999999999998854

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.99  E-value=0.0022  Score=42.05  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEec
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVR   36 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r   36 (157)
                      |+ +++|.|.| +|++|+.+++.|.+. +.+++.+..
T Consensus         1 M~-kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~   35 (170)
T d1f06a1           1 MT-NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFS   35 (170)
T ss_dssp             CC-CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred             CC-cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEe
Confidence            65 67899999 699999999999876 467665443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.96  E-value=0.0019  Score=42.57  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC--hHHHHHHh--cCcC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN--HESLVKAI--KQVD   78 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~~~~--~~~d   78 (157)
                      ..+|+|+| .|.+|...+..+...|. .|++.+++     +++++..+++...  .++...-.|  ...+.+..  .++|
T Consensus        29 G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~-----~~r~~~a~~~Ga~--~~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          29 GSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDIN-----GEKFPKAKALGAT--DCLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSC-----GGGHHHHHHTTCS--EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccc-----hHHHHHHHHhCCC--cccCCccchhhhhhhHhhhhcCCCc
Confidence            46899998 59999999999999997 57677777     6777666665422  122111111  22222222  2799


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcC-CccEEEecc
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEG-ASRGTLRTQ  113 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~-~~~~v~~Ss  113 (157)
                      ++|.++|...     .+-.++..... .++++.++-
T Consensus       101 ~vie~~G~~~-----~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2         101 YSLDCAGTAQ-----TLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             EEEESSCCHH-----HHHHHHHTBCTTTCEEEECCC
T ss_pred             EEEEecccch-----HHHHHHHHhhcCCeEEEecCC
Confidence            9999999853     22222322221 257888764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.96  E-value=0.0077  Score=38.02  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=24.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHhC-CCcEEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKA-GHPTFVL   34 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~-g~~v~~~   34 (157)
                      ||.|.|++|.+|+.+++.+.+. ++++...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            6899999999999999998775 4666543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.95  E-value=0.0015  Score=42.43  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC---hHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN---HESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~~~~~~~~d~v   80 (157)
                      ..+|+|.|+ |.+|...+..+...|.+|++++++     +++.+..+++..   ..+ .|..+   .+.+.+.-.+.+.+
T Consensus        28 g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~-----~~r~~~~k~~Ga---~~~-~~~~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          28 GEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIG-----DEKLELAKELGA---DLV-VNPLKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHTTC---SEE-ECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCEEEEeec-ccchhhhhHHHhcCCCeEeccCCC-----HHHhhhhhhcCc---cee-cccccchhhhhcccccCCCceE
Confidence            457888874 999999999999999999999888     777776666532   222 23333   23344444566677


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      |.+++..  ......+++++..   ++++.++
T Consensus        98 v~~~~~~--~~~~~a~~~l~~~---G~i~~~g  124 (168)
T d1rjwa2          98 VVTAVSK--PAFQSAYNSIRRG---GACVLVG  124 (168)
T ss_dssp             EESSCCH--HHHHHHHHHEEEE---EEEEECC
T ss_pred             EeecCCH--HHHHHHHHHhccC---CceEecc
Confidence            7666543  2233344444332   4666664

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.94  E-value=0.00059  Score=42.20  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .++++|.|| |++|-.++..|...|.+|+++.|.+.
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence            578999995 99999999999999999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.89  E-value=0.00088  Score=41.63  Aligned_cols=36  Identities=25%  Similarity=0.450  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      .++++|.|| |++|-.++..|.+.|.+|+++.+.+.-
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccceEEEEeecccc
Confidence            468999995 999999999999999999999998654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.87  E-value=0.0037  Score=42.10  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .+++.|.| .|.||+.+++.|...|.+|++.++...
T Consensus        45 ~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeee-cccccccccccccccceeeeccCCccc
Confidence            47899999 799999999999999999999987644

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00068  Score=42.19  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      +++++|.|| |++|-.++..|.+.|.+|+++.+.+.-
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecccc
Confidence            478999995 999999999999999999999987543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.014  Score=40.18  Aligned_cols=103  Identities=18%  Similarity=0.211  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC--------------CCCCchhhHh----hhhcCCCeEEEEccC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST--------------ISGPSKSQLL----DHFKNLGVNLVIGDV   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~--------------~~~~~~~~~~----~~~~~~~v~~~~~D~   64 (157)
                      ..+|+|.| .|++|++++..|...|. ++++++.+.-              +....|.+.+    .+. ++.+.+...+.
T Consensus        30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~  107 (247)
T d1jw9b_          30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNA  107 (247)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECS
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhh
Confidence            35899999 59999999999999996 6777775441              1112233322    222 34555554444


Q ss_pred             -CChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           65 -LNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        65 -~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                       .+.+.....+...|+++......  .....+-+++.+.+ ++ +++.+
T Consensus       108 ~~~~~~~~~~~~~~divid~~d~~--~~~~~in~~~~~~~-ip-~i~g~  152 (247)
T d1jw9b_         108 LLDDAELAALIAEHDLVLDCTDNV--AVRNQLNAGCFAAK-VP-LVSGA  152 (247)
T ss_dssp             CCCHHHHHHHHHTSSEEEECCSSH--HHHHHHHHHHHHHT-CC-EEEEE
T ss_pred             hhhhccccccccccceeeeccchh--hhhhhHHHHHHHhC-CC-ccccc
Confidence             24556677778899999877654  33345556677776 44 55543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00075  Score=41.56  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      +++++|.|| |++|..++..|.+.|.+|+++.|.+.-
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecchh
Confidence            468999995 999999999999999999999988643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.82  E-value=0.00046  Score=46.61  Aligned_cols=98  Identities=14%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc-----hhhHhhhh-cCCCeEEEEccCCChHH-H--HHHh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS-----KSQLLDHF-KNLGVNLVIGDVLNHES-L--VKAI   74 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~-----~~~~~~~~-~~~~v~~~~~D~~~~~~-~--~~~~   74 (157)
                      .+++.|.| .|.||+.+++.|...|.+|+..++........     +...+.+. ...++..+.+.+++... +  .+.+
T Consensus        49 gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l  127 (193)
T d1mx3a1          49 GETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTV  127 (193)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHH
T ss_pred             CceEEEec-cccccccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHH
Confidence            46899999 69999999999999999999988764322000     00111221 22345555555543211 0  0111


Q ss_pred             c--CcCEEEEcCCCcchHHHHHHHHHHHHh
Q 040431           75 K--QVDVVISTVGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        75 ~--~~d~vv~~a~~~~~~~~~~l~~~~~~~  102 (157)
                      +  +.+.++-|.+-..+-....+++++.+.
T Consensus       128 ~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  157 (193)
T d1mx3a1         128 KQMRQGAFLVNTARGGLVDEKALAQALKEG  157 (193)
T ss_dssp             TTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             hccCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence            1  456677777776666677777777764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.00088  Score=41.68  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +++++|.|| |++|..++..|.+.|.+|+++.|+.
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEech
Confidence            468999995 9999999999999999999998763

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.75  E-value=0.0011  Score=41.17  Aligned_cols=35  Identities=34%  Similarity=0.452  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .++++|.|| |++|..++..|.+.|.+|+++.+.+.
T Consensus        30 ~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          30 VNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence            468999995 99999999999999999999988754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.74  E-value=0.0008  Score=48.64  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAG--HPTFVLVREST   39 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~~   39 (157)
                      |..+++|+|+|| |..|...+..|++.|  ++|+++.|++.
T Consensus         1 m~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           1 LPTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            777899999995 999999999999877  58999999853

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.73  E-value=0.0037  Score=40.81  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~v   80 (157)
                      ..+|+|.|+ |.+|...+..+...|. .|++.+++     +++.+..++....  .++.-+-.+.+...+...  ++|++
T Consensus        33 g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~-----~~k~~~~~~~ga~--~~i~~~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          33 GAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK-----EEKLKLAERLGAD--HVVDARRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS-----HHHHHHHHHTTCS--EEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEeCC-ChHHHHHHHHHHhhcCcccccccch-----hHHHHHHhhcccc--eeecCcccHHHHHHHhhCCCCceEE
Confidence            357888885 9999999999888885 56666676     6677666655322  223222122233333332  58999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEec
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                      |.++|...  .....++.++.   .++++.++
T Consensus       105 id~~g~~~--~~~~a~~~l~~---~G~iv~~G  131 (172)
T d1h2ba2         105 MDFVGSQA--TVDYTPYLLGR---MGRLIIVG  131 (172)
T ss_dssp             EESSCCHH--HHHHGGGGEEE---EEEEEECC
T ss_pred             EEecCcch--HHHHHHHHHhC---CCEEEEEe
Confidence            99999853  11222222322   25787765

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.0024  Score=42.50  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=54.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-------hhh-hcCCCeEEEEccCCCh-------H
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-------LDH-FKNLGVNLVIGDVLNH-------E   68 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~-~~~~~v~~~~~D~~~~-------~   68 (157)
                      .+++.|.| .|.||+.+++.+...|.+|+..++....   +....       +++ +...++..+.+.+++.       +
T Consensus        44 ~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~---~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~  119 (184)
T d1ygya1          44 GKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSP---ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKE  119 (184)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCH---HHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred             ceeeeecc-ccchhHHHHHHhhhccceEEeecCCCCh---hHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHH
Confidence            46788888 6999999999999999999988776321   11110       111 1123444444444322       1


Q ss_pred             HHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHh
Q 040431           69 SLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        69 ~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~  102 (157)
                      .+ +.+ +.++++-|++-..+-....+++++.+.
T Consensus       120 ~l-~~m-k~~a~lIN~sRG~iVde~aL~~aL~~~  151 (184)
T d1ygya1         120 AL-AKT-KPGVIIVNAARGGLVDEAALADAITGG  151 (184)
T ss_dssp             HH-TTS-CTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred             HH-hhh-CCCceEEEecchhhhhhHHHHHHHhcC
Confidence            11 111 345666666666555566666666654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.68  E-value=0.0029  Score=42.21  Aligned_cols=98  Identities=11%  Similarity=0.064  Sum_probs=60.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchh------hHhh-hhcCCCeEEEEccCCCh------HHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKS------QLLD-HFKNLGVNLVIGDVLNH------ESL   70 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~------~~~~-~~~~~~v~~~~~D~~~~------~~~   70 (157)
                      .+++.|.| .|.||+.+++.|...|.+|...++........+.      ..+. -+...++..+.+.+++.      .+.
T Consensus        44 ~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~  122 (188)
T d2naca1          44 AMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET  122 (188)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHH
T ss_pred             ccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHH
Confidence            56899999 6999999999999999999999886432111110      0011 12234555555665432      111


Q ss_pred             HHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           71 VKAIKQVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .+.+ +.+.++-|++...+-....+++++.+..
T Consensus       123 l~~m-k~ga~lIN~aRG~ivd~~aL~~aL~~g~  154 (188)
T d2naca1         123 LKLF-KRGAYIVNTARGKLCDRDAVARALESGR  154 (188)
T ss_dssp             HTTS-CTTEEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred             HHhC-CCCCEEEecCchhhhhHHHHHHHHhCCC
Confidence            1222 4566777777777666777877777653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0079  Score=37.12  Aligned_cols=89  Identities=17%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCC----------CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHH
Q 040431            3 SKSKILFIGGT----------GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVK   72 (157)
Q Consensus         3 ~~~~ilitGat----------G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~   72 (157)
                      ..++|+|.|+.          -+.+.+.+++|.+.|+++++++.++.....        . ..-..-+...-...+.+.+
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVst--------d-~d~aD~lYfeplt~e~v~~   73 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVST--------D-YDTSDRLYFEPVTLEDVLE   73 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTT--------S-TTSSSEEECCCCSHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhc--------C-hhhcCceEEccCCHHHHHH
Confidence            46799999974          277889999999999999999877543211        0 1112334455557777888


Q ss_pred             Hhc--CcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           73 AIK--QVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        73 ~~~--~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      +++  ++|.|+-..|--   ...++...+.+.|
T Consensus        74 Ii~~E~p~~ii~~~GGQ---talnla~~L~~~g  103 (121)
T d1a9xa4          74 IVRIEKPKGVIVQYGGQ---TPLKLARALEAAG  103 (121)
T ss_dssp             HHHHHCCSEEECSSSTH---HHHTTHHHHHHTT
T ss_pred             HHHHhCCCEEEeehhhh---hHHHHHHHHHHcC
Confidence            775  788887554432   2555666677776

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0011  Score=41.33  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      +++++|.|| |++|-.++..|...|.+|+++.|.+.-
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecccc
Confidence            468999995 999999999999999999999998643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.67  E-value=0.001  Score=41.26  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      ++++|.|| |++|-.++..|.+.|++|+++.|.+.
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence            57899995 99999999999999999999998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0034  Score=41.00  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      ..++++|.| .|.||+.+++.+...|.+|++...+
T Consensus        23 ~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          23 AGKVAVVAG-YGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEec-cccccHHHHHHHHhCCCeeEeeecc
Confidence            367899999 8999999999999999999999877

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.65  E-value=0.0034  Score=42.06  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchh------hHhhh-hcCCCeEEEEccCCCh------HHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKS------QLLDH-FKNLGVNLVIGDVLNH------ESL   70 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~------~~~~~-~~~~~v~~~~~D~~~~------~~~   70 (157)
                      .+++.|.| .|.||+.+++.+...|.+|...++..........      +.+.+ +...++..+.+.+++.      ...
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~  125 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKAT  125 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHH
T ss_pred             ccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHH
Confidence            47899999 6999999999999999999988865432100000      00111 1123444444544321      011


Q ss_pred             HHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           71 VKAIKQVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .+.+ +.+.++-|.+-..+-....+++++.+..
T Consensus       126 l~~m-k~~a~lIN~sRG~ivde~aL~~aL~~g~  157 (191)
T d1gdha1         126 IKSL-PQGAIVVNTARGDLVDNELVVAALEAGR  157 (191)
T ss_dssp             HTTS-CTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred             hhCc-CCccEEEecCCccchhhHHHHHHHHcCC
Confidence            1111 3566666777766666777777777753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.011  Score=37.68  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++++|+|| |.+|..-++.|++.|.+|++++-.
T Consensus        13 gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            589999997 999999999999999999999644

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.63  E-value=0.001  Score=40.83  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      +++++|.|| |++|-.++..|.+.|++|+++.+.+.-
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeeccc
Confidence            468999995 999999999999999999999887543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.62  E-value=0.0039  Score=40.95  Aligned_cols=96  Identities=10%  Similarity=0.012  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh----HHHHHHhc--C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH----ESLVKAIK--Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~----~~~~~~~~--~   76 (157)
                      ..+|+|.|+ |.+|...+..+...|. +|++++++     +++++..+++...  .+  .|..+.    ++..+...  +
T Consensus        28 G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~-----~~kl~~a~~lGa~--~~--i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          28 GSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTH-----KDKFPKAIELGAT--EC--LNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC-----GGGHHHHHHTTCS--EE--ECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCEEEEECC-CchhHHHHHHHHHcCCceeeccCCh-----HHHHHHHHHcCCc--EE--EcCCCchhHHHHHHHHhcCCC
Confidence            458999985 9999999999999996 68888887     7777766655322  11  233222    22222222  6


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .|++|.+++...  ...+.+..+...  ..+++.++-
T Consensus        98 ~d~vid~~g~~~--~~~~~~~~~~~~--~G~~v~vG~  130 (174)
T d1p0fa2          98 VDYAVECAGRIE--TMMNALQSTYCG--SGVTVVLGL  130 (174)
T ss_dssp             BSEEEECSCCHH--HHHHHHHTBCTT--TCEEEECCC
T ss_pred             CcEEEEcCCCch--HHHHHHHHHHHh--cCceEEEEE
Confidence            999999999852  112222222221  256777754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.61  E-value=0.0015  Score=41.13  Aligned_cols=36  Identities=28%  Similarity=0.538  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      .++++|.|| |++|-.++..|.+.|.+|+++.+.+..
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCcceeeeeecccc
Confidence            578999995 999999999999999999999987643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.012  Score=39.09  Aligned_cols=96  Identities=14%  Similarity=0.090  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCc--hhhHhhhh-cCCCeEEEEccCCC-------hHHHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS--KSQLLDHF-KNLGVNLVIGDVLN-------HESLVKA   73 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~--~~~~~~~~-~~~~v~~~~~D~~~-------~~~~~~~   73 (157)
                      .+++.|.| .|.||+.+++.+...|.+|+..++........  ..+.+++. ...++..+.+.+++       .+.+ +.
T Consensus        44 ~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l-~~  121 (188)
T d1sc6a1          44 GKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEI-SL  121 (188)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHH-HH
T ss_pred             ceEEEEee-cccchhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHH-hh
Confidence            46889998 79999999999999999999998764322110  11112211 22345555555432       2222 22


Q ss_pred             hcCcCEEEEcCCCcchHHHHHHHHHHHHh
Q 040431           74 IKQVDVVISTVGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        74 ~~~~d~vv~~a~~~~~~~~~~l~~~~~~~  102 (157)
                      + +.+.++-|++...+-....|++++.+.
T Consensus       122 m-k~~a~lIN~aRG~lvde~aL~~aL~~~  149 (188)
T d1sc6a1         122 M-KPGSLLINASRGTVVDIPALADALASK  149 (188)
T ss_dssp             S-CTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred             C-CCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence            2 345566666666555566666666664

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.59  E-value=0.0072  Score=39.12  Aligned_cols=100  Identities=20%  Similarity=0.174  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEcCCCcchHHH-HHHHHhCC-CcEEEEe-cCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh--c
Q 040431            1 MASKSKILFIGGTGYIGKFT-VEASVKAG-HPTFVLV-RESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI--K   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l-~~~l~~~g-~~v~~~~-r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~--~   75 (157)
                      |+++.++.|.| +|.+|+.+ .+.|.... .+++.+. |++..   ...+..++.   ++.+..   ...+++.+..  .
T Consensus         1 M~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~---~~~~~a~~~---~i~~~~---~~~d~l~~~~~~~   70 (157)
T d1nvmb1           1 MNQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS---DGLARAQRM---GVTTTY---AGVEGLIKLPEFA   70 (157)
T ss_dssp             CCSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTC---HHHHHHHHT---TCCEES---SHHHHHHHSGGGG
T ss_pred             CCCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhc---cchhhhhhc---CCcccc---cceeeeeeccccc
Confidence            77678999999 89999864 55554443 4666654 44221   111111111   232222   2344444433  4


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++|+||....... .........+.+.|  .+++-.|+
T Consensus        71 ~iDiVf~ATpag~-h~~~~~~~~aa~~G--~~VID~s~  105 (157)
T d1nvmb1          71 DIDFVFDATSASA-HVQNEALLRQAKPG--IRLIDLTP  105 (157)
T ss_dssp             GEEEEEECSCHHH-HHHHHHHHHHHCTT--CEEEECST
T ss_pred             ccCEEEEcCCchh-HHHhHHHHHHHHcC--CEEEEccc
Confidence            6899987655431 12222333333444  45666666

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0042  Score=38.83  Aligned_cols=73  Identities=19%  Similarity=0.232  Sum_probs=51.1

Q ss_pred             CCeEEEEcCC----------CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGT----------GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGat----------G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .+||+|.|+.          .+.+.+.+++|.+.|++++.++.++.     ....-.+    -.+-+...-...+.+.++
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~-----TVstd~d----~aD~lYfePlt~e~v~~I   77 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA-----TIMTDPE----MADATYIEPIHWEVVRKI   77 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT-----CGGGCGG----GSSEEECSCCCHHHHHHH
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH-----hhhcChh----hcceeeeecCCHHHHHHH
Confidence            4799999973          36788999999999999999887743     2211111    123345555678888888


Q ss_pred             hc--CcCEEEEcCC
Q 040431           74 IK--QVDVVISTVG   85 (157)
Q Consensus        74 ~~--~~d~vv~~a~   85 (157)
                      ++  ++|.|+-..|
T Consensus        78 i~~E~pd~il~~~G   91 (127)
T d1a9xa3          78 IEKERPDAVLPTMG   91 (127)
T ss_dssp             HHHHCCSEEECSSS
T ss_pred             HHHhCcCCeEEEee
Confidence            86  7999874443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.57  E-value=0.0011  Score=46.19  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |+..-.|+|+|| |.+|..+|.+|.+.|.+|+++.+..
T Consensus         1 m~~~~DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           1 MKRHYEAVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             CCSEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCccCCEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            532336999995 9999999999999999999999865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.53  E-value=0.0013  Score=47.36  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      +++|+|+|| |..|...|..|.+.|++|.++.+++.
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            689999995 99999999999999999999998753

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.53  E-value=0.0026  Score=42.24  Aligned_cols=101  Identities=13%  Similarity=0.111  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCC------C-eEEEEccCCChHHHHHHhc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNL------G-VNLVIGDVLNHESLVKAIK   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~------~-v~~~~~D~~~~~~~~~~~~   75 (157)
                      |-||.|-| .|.||+.+++.+.+++ .+|+.+....+   ......+......      . ..+-...+.-...+..++.
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSP---NYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK   76 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSC---SHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCC---cHHHHHhcccCcceeccCccceeccccceecCCchhhhhh
Confidence            34899998 8999999999999875 57777754321   2222211111100      0 0000001111123445556


Q ss_pred             CcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           76 QVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        76 ~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++|+|+.+.|.+.   ...-.+...+.|  .++|+.++
T Consensus        77 ~vDiViecTG~f~---~~e~a~~hl~~G--~KvIi~~~  109 (178)
T d1b7go1          77 TSDIVVDTTPNGV---GAQYKPIYLQLQ--RNAIFQGG  109 (178)
T ss_dssp             HCSEEEECCSTTH---HHHHHHHHHHTT--CEEEECTT
T ss_pred             cCCEEEECCCCcC---CHHHHHHHHHcC--CEEEEECC
Confidence            7999999999874   334455555666  46666543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.51  E-value=0.015  Score=38.08  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC-----------hHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN-----------HESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-----------~~~~~   71 (157)
                      +++|.|-| .|.||+.+++.+.+++ .+|+.+.-..+   ......+.+.   +...+..+-..           ...+.
T Consensus         2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~---~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (172)
T d2czca2           2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKP---DFEAYRAKEL---GIPVYAASEEFIPRFEKEGFEVAGTLN   74 (172)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSC---SHHHHHHHHT---TCCEEESSGGGHHHHHHHTCCCSCBHH
T ss_pred             cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCC---hHHHHHhhhc---CceeecccccceeeecccCccccchhh
Confidence            67999999 6999999999998865 57776653211   2222222211   12222222211           22344


Q ss_pred             HHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           72 KAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .++.++|+|+-+.|.+.   +..-++.-.+.| . +.|++|+
T Consensus        75 ~~~~~vDvViEcTG~f~---~~~~~~~hl~~G-~-k~Vi~s~  111 (172)
T d2czca2          75 DLLEKVDIIVDATPGGI---GAKNKPLYEKAG-V-KAIFQGG  111 (172)
T ss_dssp             HHHTTCSEEEECCSTTH---HHHHHHHHHHHT-C-EEEECTT
T ss_pred             hhhccCCEEEECCCCCC---CHHHHHHHHHcC-C-CEEEECC
Confidence            44568999999999985   444445566777 5 4556655

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.47  E-value=0.0026  Score=41.80  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCCcchHH-HHHHHHhCC-----CcEEEEecCCCCCCCchhhHhhh-------hcCCCeEEEEccCCChHHH
Q 040431            4 KSKILFIGGTGYIGKF-TVEASVKAG-----HPTFVLVRESTISGPSKSQLLDH-------FKNLGVNLVIGDVLNHESL   70 (157)
Q Consensus         4 ~~~ilitGatG~iG~~-l~~~l~~~g-----~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~v~~~~~D~~~~~~~   70 (157)
                      ..||.|.|| |.+|.. ++..++..-     .+++.++.+     +++++....       ...........  +   +.
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---d~   71 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDND-----KERQDRIAGACDVFIREKAPDIEFAAT--T---DP   71 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSC-----HHHHHHHHHHHHHHHHHHCTTSEEEEE--S---CH
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCC-----hhHHHHHHHHHHHHHHHhCCCcceEec--C---Ch
Confidence            568999998 555654 444555431     378888887     555542211       11223333322  1   24


Q ss_pred             HHHhcCcCEEEEcCCCcch
Q 040431           71 VKAIKQVDVVISTVGHTLL   89 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~~   89 (157)
                      .++++++|+||..++....
T Consensus        72 ~eal~~AD~Vvitag~~~~   90 (167)
T d1u8xx1          72 EEAFTDVDFVMAHIRVGKY   90 (167)
T ss_dssp             HHHHSSCSEEEECCCTTHH
T ss_pred             hhccCCCCEEEECCCcCCC
Confidence            5667899999999998763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.46  E-value=0.0066  Score=40.61  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCCh---HHHHHHhc--Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNH---ESLVKAIK--QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~~--~~   77 (157)
                      ..+|+|.|+ |.+|...+..+...|. +|++++++     +++++..++..   ... ..|..+.   +.+.++..  ++
T Consensus        26 G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~-----~~rl~~a~~~G---a~~-~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          26 GSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLN-----PARLAHAKAQG---FEI-ADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTT---CEE-EETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhhcccceeeeccc-----chhhHhhhhcc---ccE-EEeCCCcCHHHHHHHHhCCCCc
Confidence            568999985 9999888888877786 67787777     77776665553   232 2333333   23334333  58


Q ss_pred             CEEEEcCCCc
Q 040431           78 DVVISTVGHT   87 (157)
Q Consensus        78 d~vv~~a~~~   87 (157)
                      |++|.+.|..
T Consensus        96 D~vid~vG~~  105 (195)
T d1kola2          96 DCAVDAVGFE  105 (195)
T ss_dssp             EEEEECCCTT
T ss_pred             EEEEECcccc
Confidence            9999999853

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.0018  Score=43.53  Aligned_cols=37  Identities=11%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |+..-.|+|+| +|..|...|..|.+.|++|.++.+++
T Consensus         2 m~~~yDviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           2 IDTDYDVIVLG-TGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             CCCBCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCcCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            55455789999 59999999999999999999999875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.43  E-value=0.0013  Score=45.50  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |+|+|+|| |..|...+..|.+.|++|+++.+++
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            58999996 9999999999999999999998764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.027  Score=35.88  Aligned_cols=90  Identities=12%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh-hhhc--------CCCeEEEEccCCChHHHHHHhc-
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL-DHFK--------NLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~--------~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      ||.+.| .|.+|.+++++|++.|+.+ +.+|.     .++...+ +...        -.+...+...+.+.+.+..... 
T Consensus         2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~   74 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRT-----FEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEA   74 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSS-----THHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHH
T ss_pred             eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCC-----HHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcc
Confidence            688999 6999999999999988865 56666     3332221 1110        0122333333444444443332 


Q ss_pred             ------CcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           76 ------QVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        76 ------~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                            .-.++++.... .....+.+.+.+.+.+
T Consensus        75 l~~~~~~~~~iid~sT~-~p~~~~~~~~~~~~~g  107 (156)
T d2cvza2          75 LYPYLREGTYWVDATSG-EPEASRRLAERLREKG  107 (156)
T ss_dssp             HTTTCCTTEEEEECSCC-CHHHHHHHHHHHHTTT
T ss_pred             ccccccccccccccccC-CHHHHHHHHHHHHHcC
Confidence                  23344444444 4666677777777665

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.42  E-value=0.002  Score=39.94  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=32.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS   41 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~   41 (157)
                      +++++|.|| |++|-.+|..|.+.|.+|+++.|.+...
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            468999995 9999999999999999999999986543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.39  E-value=0.0021  Score=44.27  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .+||+|+|| |..|..++..|.+.|++|+++.|++.
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            579999996 99999999999999999999998753

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.37  E-value=0.0016  Score=42.90  Aligned_cols=77  Identities=19%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             CCeEEEEcCCCcchHH--HHHHHHhC----CCcEEEEecCCCCCCCchhhHhh-------hhcCCCeEEEEccCCChHHH
Q 040431            4 KSKILFIGGTGYIGKF--TVEASVKA----GHPTFVLVRESTISGPSKSQLLD-------HFKNLGVNLVIGDVLNHESL   70 (157)
Q Consensus         4 ~~~ilitGatG~iG~~--l~~~l~~~----g~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~v~~~~~D~~~~~~~   70 (157)
                      .|||.|.|| |.+|..  ++..|+..    +.+++.++.+     +++++...       ........+...  +|   .
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did-----~~~~~~~~~~~~~~~~~~~~~~~i~~~--td---~   70 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDID-----EERLDAILTIAKKYVEEVGADLKFEKT--MN---L   70 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSC-----HHHHHHHHHHHHHHHHHTTCCCEEEEE--SC---H
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCC-----chHHHHHHHHHHHHHHhcCCCeEEEEe--CC---h
Confidence            579999996 888865  34445543    3589999988     55544211       111222332222  23   4


Q ss_pred             HHHhcCcCEEEEcCCCcchHH
Q 040431           71 VKAIKQVDVVISTVGHTLLAD   91 (157)
Q Consensus        71 ~~~~~~~d~vv~~a~~~~~~~   91 (157)
                      .++++++|+|++.++......
T Consensus        71 ~eaL~dad~Vv~~~~~g~~~~   91 (171)
T d1obba1          71 DDVIIDADFVINTAMVGGHTY   91 (171)
T ss_dssp             HHHHTTCSEEEECCCTTHHHH
T ss_pred             hhcccCCCeEeeecccccccc
Confidence            567899999999998876443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.0051  Score=40.49  Aligned_cols=78  Identities=17%  Similarity=0.164  Sum_probs=52.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCC-eEEEEccC--CChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG-VNLVIGDV--LNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~-v~~~~~D~--~~~~~~~~~~~~~d~v   80 (157)
                      .++++|.|-+.-+|+.++..|+++|..|+.........    .   ....... ......|+  ..++.+++....+|++
T Consensus        29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          29 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK----F---TRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE----E---ESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc----c---ccccceeeeeeccccccccchhHHhhccccCCEE
Confidence            57999999999999999999999999998765442110    0   0000000 01112222  3567788888899999


Q ss_pred             EEcCCCcc
Q 040431           81 ISTVGHTL   88 (157)
Q Consensus        81 v~~a~~~~   88 (157)
                      |..+|...
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99888754

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.33  E-value=0.00017  Score=46.61  Aligned_cols=65  Identities=20%  Similarity=0.238  Sum_probs=36.0

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcCCC
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTVGH   86 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a~~   86 (157)
                      |-+.| +|.+|+++++.|.+.++.+.+.+|+     +++++.+.+.....    ..+.      .++.+..|+||-+...
T Consensus         2 IgfIG-~G~mg~~l~~~L~~~~~~~~v~~R~-----~~~~~~l~~~~~~~----~~~~------~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLKDRYEIGYILSRS-----IDRARNLAEVYGGK----AATL------EKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC----CCCEECSS-----HHHHHHHHHHTCCC----CCSS------CCCCC---CEEECSCT
T ss_pred             EEEEe-CcHHHHHHHHHHHhCCCEEEEEeCC-----hhhhcchhhccccc----ccch------hhhhccCcEEEEeccc
Confidence            45667 7999999999886544444577887     77777665543211    1111      1234556777766655


Q ss_pred             c
Q 040431           87 T   87 (157)
Q Consensus        87 ~   87 (157)
                      .
T Consensus        66 ~   66 (153)
T d2i76a2          66 R   66 (153)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.32  E-value=0.0023  Score=42.16  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~   39 (157)
                      .+||+|.|| |..|...|..|.+.|+ +|+++.|.+.
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            579999995 9999999999999998 5999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.28  E-value=0.0073  Score=39.31  Aligned_cols=74  Identities=19%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCC----hHHHHHHhc--C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLN----HESLVKAIK--Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~~~~~~~--~   76 (157)
                      ..+|+|.|+ |.+|...+..+...|. +|++++++     +++++..+++...  .+  .|..+    .+.+.+...  +
T Consensus        29 g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~-----~~rl~~a~~~GAd--~~--in~~~~~~~~~~~~~~~~~~G   98 (175)
T d1cdoa2          29 GSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLN-----PDKFEKAKVFGAT--DF--VNPNDHSEPISQVLSKMTNGG   98 (175)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC-----GGGHHHHHHTTCC--EE--ECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCEEEEEec-CCccchHHHHHHHHhhchheeecch-----HHHHHHHHHcCCc--EE--EcCCCcchhHHHHHHhhccCC
Confidence            357999986 6678888888888775 68888777     7777766665422  22  23322    233333332  6


Q ss_pred             cCEEEEcCCCc
Q 040431           77 VDVVISTVGHT   87 (157)
Q Consensus        77 ~d~vv~~a~~~   87 (157)
                      +|+++.+.|..
T Consensus        99 ~d~vid~~G~~  109 (175)
T d1cdoa2          99 VDFSLECVGNV  109 (175)
T ss_dssp             BSEEEECSCCH
T ss_pred             cceeeeecCCH
Confidence            99999999985

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.28  E-value=0.0022  Score=40.03  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      .++++|.|| |++|-.++..|.+.|.+|+++.+.+.-
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            468999995 999999999999999999999987643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0058  Score=45.94  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCC--------------CCCchhh----Hhhhhc-CCCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTI--------------SGPSKSQ----LLDHFK-NLGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~--------------~~~~~~~----~~~~~~-~~~v~~~~~D   63 (157)
                      ..||+|.|+ |++|.++++.|+..|. ++++++.+.-.              ....|++    .+.... ..++..+..+
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  115 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK  115 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence            358999996 7899999999999996 78888866411              1112222    222222 3356666666


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCc
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHT   87 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~   87 (157)
                      +.+..  .+.++++|+||+..-..
T Consensus       116 i~~~~--~~~~~~~DlVi~~~Dn~  137 (426)
T d1yovb1         116 IQDFN--DTFYRQFHIIVCGLDSI  137 (426)
T ss_dssp             GGGBC--HHHHTTCSEEEECCSCH
T ss_pred             ccchH--HHHHHhcchheeccCcH
Confidence            65433  35688999999887764

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.22  E-value=0.004  Score=39.05  Aligned_cols=86  Identities=14%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             CCeEEEEcCC---CcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGT---GYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGat---G~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++|.|.|||   +..|..+.+.|.+.| .+|+.+..+.     ...        .++.+ .-++.|.+      ..+|.
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~-----~~i--------~G~~~-y~sl~dlp------~~vDl   67 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE-----EEV--------QGVKA-YKSVKDIP------DEIDL   67 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC-----SEE--------TTEEC-BSSTTSCS------SCCSE
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc-----ccc--------CCeEe-ecchhhcC------CCCce
Confidence            5899999998   888999999997766 5788775431     100        01111 12233321      35788


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           80 VISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ++-+....   ....+++.+.+.| ++.++.+|+
T Consensus        68 vvi~vp~~---~~~~~~~~~~~~g-~~~~vi~s~   97 (129)
T d2csua1          68 AIIVVPKR---FVKDTLIQCGEKG-VKGVVIITA   97 (129)
T ss_dssp             EEECSCHH---HHHHHHHHHHHHT-CCEEEECCC
T ss_pred             EEEecChH---HhHHHHHHHHHcC-CCEEEEecc
Confidence            88777654   3667888888888 777777766

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0018  Score=46.25  Aligned_cols=35  Identities=14%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      |..|+|+|| |..|..+|+.|.+.|++|.++.+++.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            458999995 99999999999999999999988753

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.019  Score=38.59  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEe-cCCCCCCCchhhHhhhhcCCCeEEEE------ccCCChHHHHHHhc-C
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLV-RESTISGPSKSQLLDHFKNLGVNLVI------GDVLNHESLVKAIK-Q   76 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~v~~~~------~D~~~~~~~~~~~~-~   76 (157)
                      |||++.| ++..|..+.+.|++.|++|..+. ..............+...  ++.+..      -+..+++.+..+-. +
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~--~ipv~~~~~~~~~~~~~~~~~~~l~~~~   77 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKD--GVPVFKYSRWRAKGQALPDVVAKYQALG   77 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHH--TCCEEECSCCEETTEECHHHHHHHHTTC
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhc--CCcccccccccccccccHHHHHHHHHhC
Confidence            5899998 57789999999999999988554 322222123333322222  222222      23334554444333 6


Q ss_pred             cCEEEEcC
Q 040431           77 VDVVISTV   84 (157)
Q Consensus        77 ~d~vv~~a   84 (157)
                      +|.+|...
T Consensus        78 ~Dliv~~~   85 (203)
T d2bw0a2          78 AELNVLPF   85 (203)
T ss_dssp             CSEEEESS
T ss_pred             CCceEEee
Confidence            88887654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.19  E-value=0.0038  Score=38.92  Aligned_cols=92  Identities=11%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh-CCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-CcCEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-QVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~~d~vv   81 (157)
                      +.+++|.|| |.+|.+|++++.. .+++++++.-+....    ..  ..  -.++.++     ..+.++++.+ ..+.++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k----~G--~~--I~Gi~V~-----~~~~l~~~~~~~i~iai   68 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEK----VG--RP--VRGGVIE-----HVDLLPQRVPGRIEIAL   68 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTT----TT--CE--ETTEEEE-----EGGGHHHHSTTTCCEEE
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHh----cC--CE--ECCEEEe-----cHHHHHHHHhhcccEEE
Confidence            348999995 9999999998754 367877665443221    10  00  1244444     3344666555 466655


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      -++..   ...+.+++.|.+.| ++.+...+.
T Consensus        69 ~~i~~---~~~~~I~d~l~~~g-Ik~I~~f~~   96 (126)
T d2dt5a2          69 LTVPR---EAAQKAADLLVAAG-IKGILNFAP   96 (126)
T ss_dssp             ECSCH---HHHHHHHHHHHHHT-CCEEEECSS
T ss_pred             EeCCH---HHHHHHHHHHHHcC-CCEEeecCc
Confidence            55443   34677999999998 887777654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.012  Score=38.42  Aligned_cols=34  Identities=24%  Similarity=0.223  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++++|.|-+.-+|+.++..|.++|+.|+++...
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~   70 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF   70 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             cceEEEEeccccccHHHHHHHHHhhccccccccc
Confidence            5899999999999999999999999999877544

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.06  E-value=0.0028  Score=43.75  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |||+|+|| |.-|...+..|.+.|++|+++.+++
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            68999995 9999999999999999999998764

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.014  Score=39.17  Aligned_cols=83  Identities=16%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCC-ch---hhHh-hhhcCCCeEEEEccCCChHHHHHHhc-
Q 040431            2 ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGP-SK---SQLL-DHFKNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         2 ~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~-~~---~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      |+.|||+++| ++..+..+.+.|++.|++|..+.-.+..... ..   .... ......++.....+..+.+...+.++ 
T Consensus         1 ~~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (206)
T d1fmta2           1 SESLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAE   79 (206)
T ss_dssp             CCCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHH
T ss_pred             CCCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhh
Confidence            4578999998 5778999999999999997755433211100 00   0001 11112356666666655666666665 


Q ss_pred             -CcCEEEEcCC
Q 040431           76 -QVDVVISTVG   85 (157)
Q Consensus        76 -~~d~vv~~a~   85 (157)
                       ++|.++....
T Consensus        80 ~~~d~~v~~~~   90 (206)
T d1fmta2          80 LQADVMVVVAY   90 (206)
T ss_dssp             TTCSEEEEESC
T ss_pred             hcceEEEeecc
Confidence             5777665444

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.01  E-value=0.0028  Score=44.58  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|+|+|| |..|...+..|.+.|++|+++.+.+
T Consensus        30 pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          30 PKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            478999995 9999999999999999999998764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.99  E-value=0.0052  Score=41.49  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++|+|-| -|.+|+++++.|.+.|.+|++.+.+
T Consensus        27 gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecch
Confidence            57899998 7999999999999999999988765

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.021  Score=37.36  Aligned_cols=34  Identities=6%  Similarity=0.043  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++++|.|-+.-+|+.++..|+++|..|+++...
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~   72 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK   72 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence            5799999999999999999999999999987665

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.96  E-value=0.01  Score=37.57  Aligned_cols=83  Identities=12%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             CCeEEEEcCC---CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGT---GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGat---G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++|.|.||+   +..|..+++.|.+.|++|+.+.-+.     ..      ..  +..+ .-++      .++-..+|.+
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~-----~~------i~--G~~~-~~sl------~dlp~~iD~v   78 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY-----EE------VL--GRKC-YPSV------LDIPDKIEVV   78 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC-----SE------ET--TEEC-BSSG------GGCSSCCSEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcc-----cc------cC--CCcc-cccc------cccCccceEE
Confidence            5789999998   7899999999999999988775331     00      00  1111 1111      1122357877


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      +-+....   ....+++.+.+.| .+.+.+
T Consensus        79 ~i~vp~~---~~~~~~~e~~~~g-~k~v~~  104 (139)
T d2d59a1          79 DLFVKPK---LTMEYVEQAIKKG-AKVVWF  104 (139)
T ss_dssp             EECSCHH---HHHHHHHHHHHHT-CSEEEE
T ss_pred             EEEeCHH---HHHHHHHHHHHhC-CCEEEE
Confidence            7666654   3666777777777 554444

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0049  Score=40.82  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|+|.|| |..|...+..|.++||+|+++.+.+
T Consensus        43 ~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          43 KKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            579999995 9999999999999999999999976

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.94  E-value=0.0055  Score=37.49  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .++++|.|| |++|..++..|...|.+|.++.|.+.
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            468999995 99999999999999999999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.0032  Score=44.12  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +.+|+|.|| |-.|..++..|.+.|++|.++.+.+
T Consensus         2 k~~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            457999996 8999999999999999999999874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.92  E-value=0.05  Score=35.29  Aligned_cols=79  Identities=18%  Similarity=0.202  Sum_probs=43.0

Q ss_pred             CCeEEEEcCC-CcchHHHHHHHHhCC----CcEEEEecCCCCCCCchhhHhhh-----hcCCCeEEEEccCCChHHHHHH
Q 040431            4 KSKILFIGGT-GYIGKFTVEASVKAG----HPTFVLVRESTISGPSKSQLLDH-----FKNLGVNLVIGDVLNHESLVKA   73 (157)
Q Consensus         4 ~~~ilitGat-G~iG~~l~~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~v~~~~~D~~~~~~~~~~   73 (157)
                      .+||.|.||. .+.+..++..+....    -++..++.++.   ..+.+.+..     +...+........+|.   .+.
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~---~~~~~~~d~~~~~~~~~~~~~~~~~~~td~---~~a   74 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEG---KEKLEIVGALAKRMVEKAGVPIEIHLTLDR---RRA   74 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGG---HHHHHHHHHHHHHHHHHTTCCCEEEEESCH---HHH
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCcc---HHHHHHHHHHHHHHHHhcCCCceeeecCCc---hhh
Confidence            3689999963 233455555554432    37888887722   122332221     1111222222222443   346


Q ss_pred             hcCcCEEEEcCCCcc
Q 040431           74 IKQVDVVISTVGHTL   88 (157)
Q Consensus        74 ~~~~d~vv~~a~~~~   88 (157)
                      ++++|+||+.++...
T Consensus        75 l~gaDvVv~ta~~~~   89 (169)
T d1s6ya1          75 LDGADFVTTQFRVGG   89 (169)
T ss_dssp             HTTCSEEEECCCTTH
T ss_pred             cCCCCEEEEccccCC
Confidence            789999999999875

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.88  E-value=0.046  Score=35.66  Aligned_cols=99  Identities=13%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEcc-----------CCChHHHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD-----------VLNHESLV   71 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D-----------~~~~~~~~   71 (157)
                      |++|.|-| -|.||+.+++.+.+++ .+|+.+.-..+   ......+...   +......+           +.-...+.
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~---~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~v~g~~~   73 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRP---DFEARMALKK---GYDLYVAIPERVKLFEKAGIEVAGTVD   73 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSC---SHHHHHHHHT---TCCEEESSGGGHHHHHHTTCCCCEEHH
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCc---HHHHHHHHhc---CCceEecccccceeecccCcccCCChh
Confidence            45899998 8999999999998876 46766653321   2222221111   11111111           11112344


Q ss_pred             HHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           72 KAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        72 ~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      .+++++|+|+-+.|.+.   +..-++.-.+.| + +.|.+|+.
T Consensus        74 ~~~~~vDvViEcTG~f~---~~~~~~~hl~~G-~-K~vi~~~~  111 (171)
T d1cf2o1          74 DMLDEADIVIDCTPEGI---GAKNLKMYKEKG-I-KAIFQGGE  111 (171)
T ss_dssp             HHHHTCSEEEECCSTTH---HHHHHHHHHHTT-C-EEEECTTS
T ss_pred             HhhcCCCEEEEccCCCC---CHHHHHHHHHcC-C-CEEEECCC
Confidence            55668999999999974   333344445666 4 56666543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.0079  Score=35.15  Aligned_cols=82  Identities=21%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             CeEEEEcCCCcchH-HHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            5 SKILFIGGTGYIGK-FTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         5 ~~ilitGatG~iG~-~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      |+|-++|- |++|- +||+.|.+.|++|...++..    .+..+.|   ...++.+..+  .+++.    ++++|.||..
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~----~~~t~~L---~~~Gi~i~~g--h~~~~----i~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEE----TERTAYL---RKLGIPIFVP--HSADN----WYDPDLVIKT   67 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSC----CHHHHHH---HHTTCCEESS--CCTTS----CCCCSEEEEC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCC----ChhHHHH---HHCCCeEEee--ecccc----cCCCCEEEEe
Confidence            67888885 55564 78999999999999988773    2222233   3345655544  22222    3579999999


Q ss_pred             CCCcchHHHHHHHHHHHHhc
Q 040431           84 VGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .++...+   --+.++++.|
T Consensus        68 sAI~~~n---pel~~A~~~g   84 (89)
T d1j6ua1          68 PAVRDDN---PEIVRARMER   84 (89)
T ss_dssp             TTCCTTC---HHHHHHHHTT
T ss_pred             cCcCCCC---HHHHHHHHcC
Confidence            8886422   2456666665

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.87  E-value=0.06  Score=35.05  Aligned_cols=72  Identities=15%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             CCCCCeEEEEcCCCcchHH-HHHHHHhCC--CcEEEE-ecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc-
Q 040431            1 MASKSKILFIGGTGYIGKF-TVEASVKAG--HPTFVL-VRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK-   75 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~-l~~~l~~~g--~~v~~~-~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~-   75 (157)
                      |. +.+|.|.| +|.+|+. .+..+.+.+  .+|+.+ +++     +++++.+.+..+.  ....   .|   ++++++ 
T Consensus         1 Mk-kirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~-----~~~~~~~~~~~~~--~~~~---~~---~~ell~~   65 (181)
T d1zh8a1           1 LR-KIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRT-----RSHAEEFAKMVGN--PAVF---DS---YEELLES   65 (181)
T ss_dssp             CC-CEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSS-----HHHHHHHHHHHSS--CEEE---SC---HHHHHHS
T ss_pred             CC-CcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEecc-----Hhhhhhhhccccc--ccee---ee---eeccccc
Confidence            54 56899999 6999986 467776644  366644 444     5555544333221  1111   23   334454 


Q ss_pred             -CcCEEEEcCCCc
Q 040431           76 -QVDVVISTVGHT   87 (157)
Q Consensus        76 -~~d~vv~~a~~~   87 (157)
                       ++|+|+-+....
T Consensus        66 ~~id~v~I~tp~~   78 (181)
T d1zh8a1          66 GLVDAVDLTLPVE   78 (181)
T ss_dssp             SCCSEEEECCCGG
T ss_pred             cccceeecccccc
Confidence             578887665544

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0063  Score=41.03  Aligned_cols=77  Identities=18%  Similarity=0.103  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEe-cCCCCC---CCchhhHhhhhcCCCeEEEE-ccCCChHHHHHHhc--Cc
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLV-RESTIS---GPSKSQLLDHFKNLGVNLVI-GDVLNHESLVKAIK--QV   77 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~-r~~~~~---~~~~~~~~~~~~~~~v~~~~-~D~~~~~~~~~~~~--~~   77 (157)
                      |||++.| ++..|..+.++|++.|++|..+. +.+...   .....+.+...  .++.++. -++.+++. .+.++  ++
T Consensus         1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~--~~i~~~~~~~~~~~~~-~~~i~~~~~   76 (203)
T d2blna2           1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAE--RGIPVYAPDNVNHPLW-VERIAQLSP   76 (203)
T ss_dssp             CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHH--HTCCEECCSCCCSHHH-HHHHHHTCC
T ss_pred             CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHH--cCCcceecccccchhh-hhhhhhhcc
Confidence            5899997 46679999999999999987554 332110   01112222222  2455554 34545544 44444  68


Q ss_pred             CEEEEcCC
Q 040431           78 DVVISTVG   85 (157)
Q Consensus        78 d~vv~~a~   85 (157)
                      |.+|....
T Consensus        77 Dlii~~g~   84 (203)
T d2blna2          77 DVIFSFYY   84 (203)
T ss_dssp             SEEEEESC
T ss_pred             cceeeeec
Confidence            98876653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.78  E-value=0.014  Score=35.77  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=50.6

Q ss_pred             CeEEEEcCC---CcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            5 SKILFIGGT---GYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         5 ~~ilitGat---G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      ++|.|.|+|   +..|..+.+.|++.|++|+-+..+     .+..        .++.++ -++.|      +=..+|.++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~-----~~~i--------~G~~~y-~sl~~------lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN-----YDEI--------EGLKCY-RSVRE------LPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT-----CSEE--------TTEECB-SSGGG------SCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc-----cccc--------cCcccc-ccchh------ccccceEEE
Confidence            579999988   678999999999999998876432     1110        011111 11111      112568777


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      -+....   ....+++.+.+.| .+.+.+
T Consensus        62 i~vp~~---~~~~~l~~~~~~g-~k~v~~   86 (116)
T d1y81a1          62 FVVPPK---VGLQVAKEAVEAG-FKKLWF   86 (116)
T ss_dssp             ECSCHH---HHHHHHHHHHHTT-CCEEEE
T ss_pred             EEeCHH---HHHHHHHHHHhcC-CceEEe
Confidence            665554   3566777777777 655433

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.71  E-value=0.0053  Score=43.25  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~   38 (157)
                      .+|+|+|| |.+|..+|.+|.+.|+ +|+++.|+.
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            47999995 9999999999999995 799999874

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.68  E-value=0.011  Score=38.40  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         3 ~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      ..++++|.| -|.+|+.+|++|...|.+|+++..+
T Consensus        22 aGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~D   55 (163)
T d1v8ba1          22 SGKIVVICG-YGDVGKGCASSMKGLGARVYITEID   55 (163)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             cCCEEEEec-ccccchhHHHHHHhCCCEEEEEecC
Confidence            367899999 8999999999999999999999877

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.037  Score=40.67  Aligned_cols=105  Identities=10%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-HhhhhcCCCeEEEEccCCChHH---HHHHhcCcCEEE
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHFKNLGVNLVIGDVLNHES---LVKAIKQVDVVI   81 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~---~~~~~~~~d~vv   81 (157)
                      +|+=++ ...-|...++.|.+.|.+|+-+.+...+. ..+.. ......+.+-+.+.+|+.+++.   +.++++.+|+||
T Consensus        13 rVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd-~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aDv~i   90 (402)
T d1xk7a1          13 RVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWAD-TIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFI   90 (402)
T ss_dssp             EEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCC-GGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCSEEE
T ss_pred             EEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCC-ccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcCCce
Confidence            455444 45558888888899999999887654221 11111 1222335677899999987655   556677999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|.-+.....--.=.+.+++.+  +++||+|-.
T Consensus        91 ~n~rpg~~~~lGl~~~~L~~~n--P~lI~~sis  121 (402)
T d1xk7a1          91 EASKGPAFARRGITDEVLWQHN--PKLVIAHLS  121 (402)
T ss_dssp             EECSSSHHHHTTCCHHHHHHHC--TTCEEEEEE
T ss_pred             eeecccccccccccccchhhcc--ccccceeee
Confidence            9988764222111224456665  789998643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0061  Score=42.57  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +.||+|+|| |.-|...|..|.+.|++|+++-.++
T Consensus         5 ~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            468999995 9999999999999999999998664

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.53  E-value=0.0065  Score=39.03  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=29.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~   38 (157)
                      .++|+|.|| |++|-.++..|.+.++  +|+++.+.+
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            589999996 9999999999999885  678887665

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.49  E-value=0.033  Score=40.33  Aligned_cols=94  Identities=13%  Similarity=0.011  Sum_probs=60.1

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHH---HHHHhcCcCEEEEcCCCcch
Q 040431           13 TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHES---LVKAIKQVDVVISTVGHTLL   89 (157)
Q Consensus        13 tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~~~d~vv~~a~~~~~   89 (157)
                      ...-|....+.|.+.|.+|+-+.+..... ...    ....+.+-+.+.+|+.+++.   +.++++++|+||+|-.+...
T Consensus        14 ~~~agp~~~~~lad~GA~VikvE~p~~~~-~~~----~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n~~pg~~   88 (359)
T d1x74a1          14 GIGPGPHAAMILGDLGADVVRIDRPSSVD-GIS----RDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVT   88 (359)
T ss_dssp             CSTHHHHHHHHHHHTTCEEEEEECC------CC----CCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEECSCTTHH
T ss_pred             CchHHHHHHHHHHHhCCEEEEECCCCCCC-chh----hhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEecCCCCch
Confidence            34557777788888899999887653221 111    11224567889999987654   55667799999999988742


Q ss_pred             HHHHHHHHHHHHhcCCccEEEecc
Q 040431           90 ADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ...--=.+.+++.+  +++||+|-
T Consensus        89 ~~lgl~~~~l~~~n--P~lI~~si  110 (359)
T d1x74a1          89 ERLGLGPEECAKVN--DRLIYARM  110 (359)
T ss_dssp             HHHTCSHHHHHHHC--TTCEEEEE
T ss_pred             hhcCCCHHHHHhhc--CCceEEEE
Confidence            22111223455664  78998863

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.069  Score=34.10  Aligned_cols=69  Identities=16%  Similarity=0.051  Sum_probs=39.0

Q ss_pred             CCeEEEEcCCCcchHH-HHHHHHhC-CCcEEEEe-cCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKF-TVEASVKA-GHPTFVLV-RESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~-l~~~l~~~-g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      +++|.|.| +|.+|+. ....+.+. +.+++.+. ++     +++.+.+.+...  +     +..+  +++++..++|+|
T Consensus         1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~-----~~~~~~~~~~~~--~-----~~~~--~~~~l~~~~D~V   65 (164)
T d1tlta1           1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPT-----RAKALPICESWR--I-----PYAD--SLSSLAASCDAV   65 (164)
T ss_dssp             CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSS-----CTTHHHHHHHHT--C-----CBCS--SHHHHHTTCSEE
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEech-----hHhhhhhhhccc--c-----cccc--cchhhhhhcccc
Confidence            35899999 6899975 46666554 46766544 44     444443332221  1     1222  233445678988


Q ss_pred             EEcCCCc
Q 040431           81 ISTVGHT   87 (157)
Q Consensus        81 v~~a~~~   87 (157)
                      +-+....
T Consensus        66 ~I~tp~~   72 (164)
T d1tlta1          66 FVHSSTA   72 (164)
T ss_dssp             EECSCTT
T ss_pred             cccccch
Confidence            7665544

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.0091  Score=40.98  Aligned_cols=35  Identities=29%  Similarity=0.222  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~   39 (157)
                      +++|+|+|| |..|..++..|.+.|. +|.++.|.+.
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            368999996 9999999999999995 8999988754

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=95.44  E-value=0.074  Score=39.22  Aligned_cols=98  Identities=19%  Similarity=0.126  Sum_probs=62.8

Q ss_pred             CcchHHHHHHHHhCCCcEEEEecCCCCCCCch---------hhHhhhhcCCCeEEEEccCCChHH---HHHHhcCcCEEE
Q 040431           14 GYIGKFTVEASVKAGHPTFVLVRESTISGPSK---------SQLLDHFKNLGVNLVIGDVLNHES---LVKAIKQVDVVI   81 (157)
Q Consensus        14 G~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~---------~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~~~d~vv   81 (157)
                      ...|...++.|.+.|.+|+-+.+...+- ..+         ........+.+=+.+.+|+.+++.   +.++++.+|+||
T Consensus        15 ~~agp~~~~~LadlGAeVIkvE~p~~gd-~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~~~Lv~~aDv~i   93 (427)
T d2vjma1          15 VQAGPACTQMMGFLGANVIKIERRGSGD-MTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELLEQMIKKADVMV   93 (427)
T ss_dssp             TTHHHHHHHHHHHTTCEEEEEECTTTCS-GGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHHHHHHHHHCSEEE
T ss_pred             hhHHHHHHHHHHHhCCeEEEECCCCCCC-cccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHHHHHHHhCCeee
Confidence            4447777788889999999988653210 111         011112235567899999987764   667778999999


Q ss_pred             EcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           82 STVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        82 ~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      +|-.+......-.=-+.+++.+  +++||.|-.
T Consensus        94 ~n~~pg~~~rlGL~~~~l~~~N--P~LI~~sis  124 (427)
T d2vjma1          94 ENFGPGALDRMGFTWEYIQELN--PRVILASVK  124 (427)
T ss_dssp             ECCSTTHHHHTTCCHHHHHHHC--TTCEEEEEE
T ss_pred             ECCCcchHHHcCCCchhhhhhC--Cccceeeee
Confidence            9988764222111234456665  889998643

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.43  E-value=0.0076  Score=40.42  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~   38 (157)
                      .+|+|+|| |..|...|..|.+.|. +|+++.+++
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            37999995 9999999999999995 799998864

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.41  E-value=0.033  Score=35.78  Aligned_cols=71  Identities=18%  Similarity=0.157  Sum_probs=38.4

Q ss_pred             CCeEEEEcCCCcchHH-HHHHHHhCC-CcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIGGTGYIGKF-TVEASVKAG-HPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitGatG~iG~~-l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      +++|.|.| .|.+|+. ....|.+.+ .++++++++     +++.+.+.+..+  +....   .|.+++.+  .++|+|+
T Consensus         1 tirvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~-----~~~~~~~~~~~~--~~~~~---~~~~~ll~--~~iD~V~   67 (167)
T d1xeaa1           1 SLKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRN-----PKVLGTLATRYR--VSATC---TDYRDVLQ--YGVDAVM   67 (167)
T ss_dssp             CEEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSC-----HHHHHHHHHHTT--CCCCC---SSTTGGGG--GCCSEEE
T ss_pred             CeEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECC-----HHHHHHHHHhcc--ccccc---ccHHHhcc--cccceec
Confidence            36899999 5888876 456665553 466666555     555555443322  11111   23232211  3678877


Q ss_pred             EcCCCc
Q 040431           82 STVGHT   87 (157)
Q Consensus        82 ~~a~~~   87 (157)
                      -+....
T Consensus        68 I~tp~~   73 (167)
T d1xeaa1          68 IHAATD   73 (167)
T ss_dssp             ECSCGG
T ss_pred             cccccc
Confidence            655544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.38  E-value=0.013  Score=37.91  Aligned_cols=35  Identities=11%  Similarity=0.181  Sum_probs=29.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .++|+|.|| |++|-.++..|.+.|+++.++.+.+.
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            568999995 99999999999999998777665543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.36  E-value=0.0083  Score=41.68  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      -.|+|.|| |..|..+|.+|.++|++|+++.+..
T Consensus         4 yDvvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           4 FDVIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            36899995 9999999999999999999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.34  E-value=0.0012  Score=44.91  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPT   31 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v   31 (157)
                      |+|+|+|| |.+|...|.+|++.|++|
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCc
Confidence            58999996 999999999999999753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.27  E-value=0.007  Score=41.69  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      |++...|+|+|| |-.|...|..|.+.|.+|.++.+.+.
T Consensus         1 M~~~~DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           1 MSQYSENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             CEEECSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCcEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            655568999996 99999999999999999999998753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.24  E-value=0.0091  Score=39.51  Aligned_cols=33  Identities=15%  Similarity=0.111  Sum_probs=28.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC--CcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG--HPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g--~~v~~~~r~~   38 (157)
                      |||+|.|| |++|-.++..|.+.+  .+|+++.|.+
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999996 999999999998875  5788888764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.23  E-value=0.013  Score=39.83  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .++|+|.|| |..|...+..|.+.|++|+++.+.+.
T Consensus        49 ~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          49 KDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CceEEEEcc-cHHHHHHHHHHHHhccceeeEeeccc
Confidence            578999995 99999999999999999999987763

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.15  E-value=0.11  Score=33.69  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=41.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC-CCcEEEE-ecCCCCCCCchhhHhhhhcC--CCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA-GHPTFVL-VRESTISGPSKSQLLDHFKN--LGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      ++|.|.| +|.+|+..++.|... +.+|+.+ +++     +++.+.+.+...  ....+    ..|.+++.+ -.++|+|
T Consensus         2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~ll~-~~~iD~v   70 (184)
T d1ydwa1           2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRS-----LEKAKAFATANNYPESTKI----HGSYESLLE-DPEIDAL   70 (184)
T ss_dssp             EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSS-----HHHHHHHHHHTTCCTTCEE----ESSHHHHHH-CTTCCEE
T ss_pred             eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCC-----ccccccchhccccccceee----cCcHHHhhh-cccccee
Confidence            5899999 689999999999876 4677754 454     455444332211  11111    123333322 1257888


Q ss_pred             EEcCCCc
Q 040431           81 ISTVGHT   87 (157)
Q Consensus        81 v~~a~~~   87 (157)
                      +-+....
T Consensus        71 ~I~tp~~   77 (184)
T d1ydwa1          71 YVPLPTS   77 (184)
T ss_dssp             EECCCGG
T ss_pred             eecccch
Confidence            7655443

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.93  E-value=0.0079  Score=39.27  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      +.+|+|.|| |++|-.++..|.+.|.++.++.+.
T Consensus         3 ~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           3 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhcCCceEEEEEe
Confidence            567999995 999999999999999776555443

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.039  Score=42.41  Aligned_cols=110  Identities=11%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCC--------------CCCCchhh----HhhhhcC-CCeEEEEcc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVREST--------------ISGPSKSQ----LLDHFKN-LGVNLVIGD   63 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~--------------~~~~~~~~----~~~~~~~-~~v~~~~~D   63 (157)
                      ..+|+|.|+ |.+|.++++.|+-.|. ++++++.+.-              +....+++    .+.++.+ .++..+..+
T Consensus        25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~  103 (529)
T d1yova1          25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  103 (529)
T ss_dssp             HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            358999996 8899999999999995 6777765431              11122222    2333321 233444433


Q ss_pred             CCCh-HHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEeccccccc
Q 040431           64 VLNH-ESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQKGKMS  118 (157)
Q Consensus        64 ~~~~-~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~~~~~  118 (157)
                      ..+. +.-.+.+.+.|+||.+...  ......+-+.|.+.+ + .+|..++.|-++
T Consensus       104 ~~~~~~~~~~~~~~~dvVv~~~~~--~~~~~~l~~~c~~~~-i-p~i~~~~~G~~G  155 (529)
T d1yova1         104 PENLLDNDPSFFCRFTVVVATQLP--ESTSLRLADVLWNSQ-I-PLLICRTYGLVG  155 (529)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCC--HHHHHHHHHHHHHHT-C-CEEEEEEETTEE
T ss_pred             chhhhhhHHHHhcCCCEEEECCCC--HHHHHHHHHHHHHcC-C-CEEEEeccCCEE
Confidence            3221 1112446689999977554  444556788888887 4 477777666543

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.14  Score=37.60  Aligned_cols=99  Identities=13%  Similarity=0.064  Sum_probs=60.5

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEecCCCCCCCchh---------hHhhhhcCCCeEEEEccCCChHH---HHHHhcCcCEE
Q 040431           13 TGYIGKFTVEASVKAGHPTFVLVRESTISGPSKS---------QLLDHFKNLGVNLVIGDVLNHES---LVKAIKQVDVV   80 (157)
Q Consensus        13 tG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~---------~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~~~d~v   80 (157)
                      ....|-...+.|.+.|.+|+-+.+...+. +.+.         .......+.+=+-+.+|+.+++.   +.++++++|+|
T Consensus        15 ~~~agp~~~~~Lad~GAeVIkvE~p~~gd-~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~~~Li~~aDv~   93 (417)
T d1q7ea_          15 GVQSGPSCTQMLAWFGADVIKIERPGVGD-VTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADIL   93 (417)
T ss_dssp             CTTHHHHHHHHHHHTTCEEEEEECTTTCC-GGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHHHHHHHHHHCSEE
T ss_pred             ChhHHHHHHHHHHHhCCeEEEECCCCCCC-chhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHHHHHHhcCccc
Confidence            34556677778888899999988643211 1110         11112234577899999987655   45777899999


Q ss_pred             EEcCCCcchHHHHHHHHHHHHhcCCccEEEeccc
Q 040431           81 ISTVGHTLLADQVKIIAAIKEAEGASRGTLRTQK  114 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss~  114 (157)
                      |+|--+......-.=-+.+.+.+  +++||+|-.
T Consensus        94 i~n~~pg~~~rlGl~~~~l~~~n--P~lI~~sis  125 (417)
T d1q7ea_          94 VENFHPGAIDHMGFTWEHIQEIN--PRLIFGSIK  125 (417)
T ss_dssp             EECCCC-------CCHHHHHHHC--TTCEEEEEE
T ss_pred             EeccCCCcHhhcCCCHHHHHhhC--CCEEEEeee
Confidence            99988865222211234456664  889998643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.015  Score=33.03  Aligned_cols=34  Identities=15%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +++|.|.| +|.+|+-++.+-...|.++++++-++
T Consensus         1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            46899999 59999999999999999999998664

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.62  E-value=0.025  Score=35.89  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=28.6

Q ss_pred             CeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +.++|.+ +.||+|..++..|.+.|++|+++.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            4555652 469999999999999999999999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.60  E-value=0.019  Score=40.76  Aligned_cols=33  Identities=18%  Similarity=0.439  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      -.|+|+|| |..|...+.+|.+.|.+|+++.+.+
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            47999996 9999999999999999999999864

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.56  E-value=0.022  Score=38.64  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .-.|+|+|| |..|...+..|.+.|++|.++.+.+
T Consensus         2 ~yDViIIGa-G~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           2 HYDVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            557999995 9999999999999999999999875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.021  Score=40.17  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=28.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .|+|+|| |..|...|..|.+.|++|+++.+++
T Consensus         1 DViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3789995 9999999999999999999998764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.42  E-value=0.12  Score=33.98  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             EEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHh--cCcCEEEEcCCC
Q 040431            9 FIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAI--KQVDVVISTVGH   86 (157)
Q Consensus         9 itGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~--~~~d~vv~~a~~   86 (157)
                      +.-+|-+-|.| .+.+++.+.+|++++|+     ++.++..+.....++.++..+.++.++.....  ..+|.|+.-.|.
T Consensus        22 ~vD~T~G~GGh-s~~iL~~~~~viaiD~D-----~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGv   95 (182)
T d1wg8a2          22 YVDATLGGAGH-ARGILERGGRVIGLDQD-----PEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGV   95 (182)
T ss_dssp             EEETTCTTSHH-HHHHHHTTCEEEEEESC-----HHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred             EEEeCCCCcHH-HHHHhcccCcEEEEhhh-----hhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccC
Confidence            34456555777 56666777799999999     66665555555678999999998877665443  368999988888


Q ss_pred             cc
Q 040431           87 TL   88 (157)
Q Consensus        87 ~~   88 (157)
                      ..
T Consensus        96 Ss   97 (182)
T d1wg8a2          96 SS   97 (182)
T ss_dssp             CH
T ss_pred             CH
Confidence            76

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.40  E-value=0.026  Score=34.18  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh---CCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK---AGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~---~g~~v~~~~r~~~~   40 (157)
                      +++++|.|| |++|-.++..|.+   .|.+|+++.|.+.-
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccccc
Confidence            478999996 9999999987654   37899999987643

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.35  E-value=0.023  Score=38.99  Aligned_cols=33  Identities=15%  Similarity=0.083  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++|+|-| -|.+|+++++.|.+.|.+|++.+.+
T Consensus        39 g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          39 GLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEeeccc
Confidence            57899999 6999999999999999999987665

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.35  E-value=0.031  Score=38.38  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=26.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHh-CCCcEEEEe
Q 040431            4 KSKILFIGGTGYIGKFTVEASVK-AGHPTFVLV   35 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~-~g~~v~~~~   35 (157)
                      .++|+|-| .|.+|+++++.|.+ .|.+|+.++
T Consensus        31 g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          31 KATVAVQG-FGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence            56899998 79999999999975 599988776

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.33  Score=33.77  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             CeEEEEc-CC-Ccc--hHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIG-GT-GYI--GKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitG-at-G~i--G~~l~~~l~~~g~~v~~~~r~   37 (157)
                      +||+|++ || |++  +.+|+++|.++|++|..++..
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            4677766 33 444  445889999999999987743

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.23  E-value=0.047  Score=34.84  Aligned_cols=34  Identities=15%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-EEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-TFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v~~~~r~~   38 (157)
                      .++|+|.|| |.+|--.+..+++.|.+ |+++.|..
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            468999995 99999999999999865 77887764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.07  E-value=0.13  Score=34.42  Aligned_cols=88  Identities=10%  Similarity=0.168  Sum_probs=59.3

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++||=.| |+|..-.++++.. ..| +|++++.+     +..++.+.+.  ...++.++..|..+++.....+..+|++
T Consensus        57 g~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis-----~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v  129 (209)
T d1nt2a_          57 DERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYS-----AKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI  129 (209)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCC-----HHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             CCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCC-----HHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEE
Confidence            46899999 6677777777655 444 89999888     6555544321  2358999999999988776666678888


Q ss_pred             EEcCCCcchHHHHHHHHHHH
Q 040431           81 ISTVGHTLLADQVKIIAAIK  100 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~  100 (157)
                      ++......  ....++..+.
T Consensus       130 ~~~~~~~~--~~~~~l~~~~  147 (209)
T d1nt2a_         130 YQDIAQKN--QIEILKANAE  147 (209)
T ss_dssp             EECCCSTT--HHHHHHHHHH
T ss_pred             EecccChh--hHHHHHHHHH
Confidence            88655433  3334444443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.05  E-value=0.026  Score=35.94  Aligned_cols=31  Identities=19%  Similarity=0.196  Sum_probs=26.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      ||+|.|| |++|-.++..|. ++.+|+++.+.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence            7999995 999999999985 478999998765

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.02  E-value=0.22  Score=33.38  Aligned_cols=97  Identities=20%  Similarity=0.195  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCc-E--EEEecCCCCCCCchhhHhhhhcCCCeEEEEccC----------------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHP-T--FVLVRESTISGPSKSQLLDHFKNLGVNLVIGDV----------------   64 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~-v--~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~----------------   64 (157)
                      +.+|.|.| -|+.|..++.++.+.+.+ |  ++++-+     .+.+   ... .....+..+.-                
T Consensus        15 ~~ki~ViG-vGGaG~n~v~~l~~~~~~~v~~iainTD-----~~~L---~~~-~~~~ki~ig~~~t~g~Gag~~p~~g~~   84 (209)
T d2vapa1          15 KAKITVVG-CGGAGNNTITRLKMEGIEGAKTVAINTD-----AQQL---IRT-KADKKILIGKKLTRGLGAGGNPKIGEE   84 (209)
T ss_dssp             CCCEEEEE-EHHHHHHHHHHHHHHTCTTEEEEEEESB-----HHHH---HTS-CCSEEEECCTTTTTTBCCTTCHHHHHH
T ss_pred             CCcEEEEE-eCChHHHHHHHHHHcCCCceEEEEEeCC-----HHHH---hcC-CcchhcccccccccccccccchHHHHH
Confidence            46899999 588899999999998742 4  444433     2222   111 11122222211                


Q ss_pred             ---CChHHHHHHhcCcCEEEEcCCCcc---hHHHHHHHHHHHHhcCCccEEEe
Q 040431           65 ---LNHESLVKAIKQVDVVISTVGHTL---LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        65 ---~~~~~~~~~~~~~d~vv~~a~~~~---~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                         .+.+++.+.++++|.||-.||...   .-.+..+.+.+++.+ ...+-++
T Consensus        85 aa~e~~~~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake~g-~lvv~iv  136 (209)
T d2vapa1          85 AAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIG-ALTVAVV  136 (209)
T ss_dssp             HHHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             HHHHHHHHHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHHcC-CcEEEEE
Confidence               234577788889999999999987   334566777888877 4444443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.90  E-value=0.012  Score=38.12  Aligned_cols=73  Identities=14%  Similarity=0.084  Sum_probs=44.5

Q ss_pred             CeEEEEcCCCcchHHHHHH-HHhC-----CCcEEEEecCCCCCCCchhhHhhh----hcCCCeEEEEccCCChHHHHHHh
Q 040431            5 SKILFIGGTGYIGKFTVEA-SVKA-----GHPTFVLVRESTISGPSKSQLLDH----FKNLGVNLVIGDVLNHESLVKAI   74 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~-l~~~-----g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~~~~~~~   74 (157)
                      |||.|.|| |.+|...+-. |+..     ..++..++.+     +++++...+    .......+...  ++   ..+.+
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did-----~~k~~~~~d~~~~~~~~~~~~~~t--~~---~~~~l   69 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDID-----EEKQKIVVDFVKRLVKDRFKVLIS--DT---FEGAV   69 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSC-----HHHHHHHHHHHHHHHTTSSEEEEC--SS---HHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecC-----cHHHHHHHHHHHhhhccCceEEEe--cC---ccccc
Confidence            58999997 5578776643 3321     2479999887     555442222    11223333221  22   33567


Q ss_pred             cCcCEEEEcCCCcc
Q 040431           75 KQVDVVISTVGHTL   88 (157)
Q Consensus        75 ~~~d~vv~~a~~~~   88 (157)
                      +++|+||..++...
T Consensus        70 ~~aDvVVita~~~~   83 (162)
T d1up7a1          70 VDAKYVIFQFRPGG   83 (162)
T ss_dssp             TTCSEEEECCCTTH
T ss_pred             CCCCEEEEecccCC
Confidence            89999999999875

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.85  E-value=0.03  Score=33.94  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC---CCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA---GHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~---g~~v~~~~r~~~~   40 (157)
                      .++++|.|| |++|-.++..|...   |.+|+++.|.+.-
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            468999996 99999999776654   4579999887543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=93.83  E-value=0.029  Score=40.09  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |...-.++|+| +|.-|.-+|.+|.+.|++|.++-+..
T Consensus         1 md~~yDviIVG-sG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           1 MDIKYDVVIVG-SGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             CCSEEEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCcccEEEEC-cCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            54455899999 59999999999999999999998864

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.74  E-value=0.28  Score=32.33  Aligned_cols=100  Identities=18%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC---C--cEEEEecCCCCCCCchhhH-hhhhc-----CCCeEE-------------
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG---H--PTFVLVRESTISGPSKSQL-LDHFK-----NLGVNL-------------   59 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g---~--~v~~~~r~~~~~~~~~~~~-~~~~~-----~~~v~~-------------   59 (157)
                      +++|.|=| =|.||+.+.+.+++++   .  +|+.+.-...+  .+.+.. ++...     +..+..             
T Consensus         2 ~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~--~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~   78 (190)
T d1k3ta1           2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTD--AEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTL   78 (190)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCC--HHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEE
T ss_pred             CeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCC--HHHHHHHhhccccccCCCceEEEccCccccccccce
Confidence            67999999 7999999999999875   2  44444332111  333332 22110     111211             


Q ss_pred             -E-------EccCCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           60 -V-------IGDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        60 -~-------~~D~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                       +       ...-.||.++.=--.++|+|+-+.|.+.   ++..+..-.+.| .++++.
T Consensus        79 i~~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~---~~~~a~~hl~~G-akkVii  133 (190)
T d1k3ta1          79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFT---AKAAAEGHLRGG-ARKVVI  133 (190)
T ss_dssp             EETTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCC---BHHHHTHHHHTT-CSEEEE
T ss_pred             EEcCceEEecccCCChhHCCHhhcCCcEEEEeccccc---ccccchhhcccC-cceeee
Confidence             1       1112455554322237999999999886   333444445666 777766

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=93.65  E-value=0.037  Score=39.79  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .|+|+| +|+-|..+|.+|.+.|++|.++-+..
T Consensus         4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            478999 69999999999999999999999864

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.49  E-value=0.041  Score=39.97  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=26.0

Q ss_pred             CeEEEEcC------CCcch---HHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILFIGG------TGYIG---KFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ilitGa------tG~iG---~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |||++++.      +|++|   ..|+++|.+.||+|++++..
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~   42 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPS   42 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            58888775      46665   66799999999999998744

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.45  E-value=0.19  Score=32.22  Aligned_cols=75  Identities=9%  Similarity=0.007  Sum_probs=46.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh----------------cCCCeEEEEccCCCh
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF----------------KNLGVNLVIGDVLNH   67 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----------------~~~~v~~~~~D~~~~   67 (157)
                      ..+||..|. |. |. .+..|+++|++|+.++.+     +..++..++.                ....+.++.+|..+.
T Consensus        21 ~~rvLd~GC-G~-G~-~a~~la~~G~~V~gvD~S-----~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          21 GARVLVPLC-GK-SQ-DMSWLSGQGYHVVGAELS-----EAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             TCEEEETTT-CC-SH-HHHHHHHHCCEEEEEEEC-----HHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             CCEEEEecC-cC-CH-HHHHHHHcCCceEeeccc-----HHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence            468999992 22 44 455677789999999988     4444333221                124567888888765


Q ss_pred             HHHHHHhcCcCEEEEcCCCcc
Q 040431           68 ESLVKAIKQVDVVISTVGHTL   88 (157)
Q Consensus        68 ~~~~~~~~~~d~vv~~a~~~~   88 (157)
                      ....  ....|.|+.......
T Consensus        93 ~~~~--~~~~D~i~~~~~l~~  111 (201)
T d1pjza_          93 TARD--IGHCAAFYDRAAMIA  111 (201)
T ss_dssp             THHH--HHSEEEEEEESCGGG
T ss_pred             cccc--ccceeEEEEEeeeEe
Confidence            4321  234688776555443

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.37  E-value=0.32  Score=32.10  Aligned_cols=96  Identities=19%  Similarity=0.219  Sum_probs=60.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEcc-C----------------
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD-V----------------   64 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D-~----------------   64 (157)
                      +||.|.| -|+.|..++.++.+.+.   +.++++-+     .+.+   ... +....++.+. .                
T Consensus         1 ~kI~viG-vGGaG~n~v~~l~~~~~~~v~~iainTD-----~~~L---~~~-~a~~ki~iG~~~t~G~G~g~~p~~g~~a   70 (194)
T d1w5fa1           1 LKIKVIG-VGGAGNNAINRMIEIGIHGVEFVAVNTD-----LQVL---EAS-NADVKIQIGENITRGLGAGGRPEIGEQA   70 (194)
T ss_dssp             CCEEEEE-EHHHHHHHHHHHHHHCCTTEEEEEEESC-----HHHH---HTC-CCSEEEECCTTTTTTSCCTTCHHHHHHH
T ss_pred             CeEEEEE-eCchHHHHHHHHHHcCCCceEEEEEcCC-----HHHH---hcC-CcceEEecccccCCCcccccCchhhHhH
Confidence            4789999 58889999999999874   33444433     2211   111 1122222221 1                


Q ss_pred             --CChHHHHHHhcCcCEEEEcCCCcc---hHHHHHHHHHHHHhcCCccEEEe
Q 040431           65 --LNHESLVKAIKQVDVVISTVGHTL---LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        65 --~~~~~~~~~~~~~d~vv~~a~~~~---~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                        .+.+++.+.++++|.||-.||...   .-.+..+.+.+++.+ ...+-++
T Consensus        71 a~e~~~~I~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake~g-~lvv~iv  121 (194)
T d1w5fa1          71 ALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMG-ILTVAIV  121 (194)
T ss_dssp             HHHTHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHHHcC-CceEEEE
Confidence              245677777889999999999887   444667888888887 4444333

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.9  Score=32.15  Aligned_cols=100  Identities=12%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHh----hh---------hcCCCeEEEEccCCChHH
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLL----DH---------FKNLGVNLVIGDVLNHES   69 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~----~~---------~~~~~v~~~~~D~~~~~~   69 (157)
                      ..+|+=.| +| .|..+.......+. +++.++.+     +...+..    ++         ....++.++.+|+.+.+ 
T Consensus       152 ~~~vlD~G-cG-~G~~~~~~a~~~~~~~~~Gid~s-----~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~-  223 (328)
T d1nw3a_         152 DDLFVDLG-SG-VGQVVLQVAAATNCKHHYGVEKA-----DIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE-  223 (328)
T ss_dssp             TCEEEEET-CT-TSHHHHHHHHHCCCSEEEEEECS-----HHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH-
T ss_pred             CCEEEEcC-CC-CCHHHHHHHHHhCCCeEEEEeCC-----HHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc-
Confidence            45677777 33 36666655556665 68888877     4332211    11         12457999999998876 


Q ss_pred             HHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           70 LVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        70 ~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ..+.+.++|+|+.+.-.+.......+.+..+..+...+||..
T Consensus       224 ~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         224 WRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence            444445688887654444333334444444443322466543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.043  Score=34.17  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHH----hCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASV----KAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~----~~g~~v~~~~r~~~   39 (157)
                      .++++|.|| |++|-.++..|.    +.|.+|+++.+.+.
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            368999995 999999998885    35889999988764

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.054  Score=39.11  Aligned_cols=92  Identities=11%  Similarity=-0.023  Sum_probs=60.9

Q ss_pred             EEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhcCCCeEEEEccCCChH-HHHHHhcCcCEEEEc
Q 040431            9 FIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFKNLGVNLVIGDVLNHE-SLVKAIKQVDVVIST   83 (157)
Q Consensus         9 itGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~-~~~~~~~~~d~vv~~   83 (157)
                      +..|+|.+|..|+    +.+.+|+.+..+     ++..+..+    ...-.++.++.+|..+.- ........+|+||-.
T Consensus       219 LycG~G~fsl~La----~~~~~V~gvE~~-----~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         219 LFCGMGNFTLPLA----TQAASVVGVEGV-----PALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             ESCTTTTTHHHHH----TTSSEEEEEESC-----HHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             ecccccccchhcc----ccccEEEeccCc-----HHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            4567888887764    467899999877     43333222    223357899999886532 111222358999888


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEecc
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      ..-.+.   ..++..+.+.+ .++|||+|=
T Consensus       290 PPR~G~---~~~~~~l~~~~-~~~ivYVSC  315 (358)
T d1uwva2         290 PARAGA---AGVMQQIIKLE-PIRIVYVSC  315 (358)
T ss_dssp             CCTTCC---HHHHHHHHHHC-CSEEEEEES
T ss_pred             CCCccH---HHHHHHHHHcC-CCEEEEEeC
Confidence            777663   24677777777 899999984

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.84  E-value=0.34  Score=32.75  Aligned_cols=88  Identities=18%  Similarity=0.298  Sum_probs=57.9

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++||=.| |+|+.-.++++. ... -.|++++.+     +..++.+.+.  ...++..+..|..+++.........|++
T Consensus        75 G~~VLDlGcGsG~~~~~la~~-~~~-g~V~aVDiS-----~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i  147 (230)
T d1g8sa_          75 DSKILYLGASAGTTPSHVADI-ADK-GIVYAIEYA-----PRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHH-TTT-SEEEEEESC-----HHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCEEEEeCEEcCHHHHHHHHh-CCC-CEEEEEeCc-----HHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence            57899999 778888888875 333 489999988     6555544332  2357888999998888765544456666


Q ss_pred             EEcCCCcchHHHHHHHHHHH
Q 040431           81 ISTVGHTLLADQVKIIAAIK  100 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~  100 (157)
                      ++.....  .....++..+.
T Consensus       148 ~~~~~~~--~~~~~~l~~~~  165 (230)
T d1g8sa_         148 YEDVAQP--NQAEILIKNAK  165 (230)
T ss_dssp             EECCCST--THHHHHHHHHH
T ss_pred             eccccch--HHHHHHHHHHH
Confidence            6655543  33444444444

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.06  Score=35.46  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             CeEEEEcCCC-cchH-----HHHHHHHhCCCcEEEEe
Q 040431            5 SKILFIGGTG-YIGK-----FTVEASVKAGHPTFVLV   35 (157)
Q Consensus         5 ~~ilitGatG-~iG~-----~l~~~l~~~g~~v~~~~   35 (157)
                      |+++|+| || ++|+     .|+..|.++|++|.+++
T Consensus         2 ~~~~i~g-t~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTG-TDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            6799999 55 8886     67888899999999886

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.58  E-value=0.072  Score=36.64  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEec
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVR   36 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r   36 (157)
                      .++|+|-| -|.+|+++++.|.+.|.+|+.++-
T Consensus        31 g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          31 GKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence            57899998 799999999999999999987763

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=92.55  E-value=0.14  Score=31.91  Aligned_cols=34  Identities=9%  Similarity=0.106  Sum_probs=29.0

Q ss_pred             CCeEEEEcCC---CcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGT---GYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGat---G~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .++|.|.|||   +..|..+.+.|.+.|++++.+.-+
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~   49 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR   49 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEec
Confidence            5789999998   678999999999999998876533

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.42  E-value=0.06  Score=36.02  Aligned_cols=83  Identities=12%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCCCC-------CCc-----hh-h-HhhhhcCCCeEEEEcc-CCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA--GHPTFVLVRESTIS-------GPS-----KS-Q-LLDHFKNLGVNLVIGD-VLN   66 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~~~-------~~~-----~~-~-~~~~~~~~~v~~~~~D-~~~   66 (157)
                      +.||+|+|| |-.|...|.+|.+.  |++|+++.+.+...       .+.     .. . ........++.+...- +..
T Consensus         1 ~~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   79 (230)
T d1cjca2           1 TPQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR   79 (230)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc
Confidence            358999995 99999999999765  78999999876321       010     00 1 1112234456655332 222


Q ss_pred             hHHHHHHhcCcCEEEEcCCCc
Q 040431           67 HESLVKAIKQVDVVISTVGHT   87 (157)
Q Consensus        67 ~~~~~~~~~~~d~vv~~a~~~   87 (157)
                      ..++.++....|.++-..|..
T Consensus        80 ~~~~~~l~~~~d~v~~a~Ga~  100 (230)
T d1cjca2          80 DVTVQELQDAYHAVVLSYGAE  100 (230)
T ss_dssp             TBCHHHHHHHSSEEEECCCCC
T ss_pred             cccHHHHHhhhceEEEEeecc
Confidence            223444445678888777763

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.24  E-value=0.18  Score=33.83  Aligned_cols=87  Identities=20%  Similarity=0.195  Sum_probs=48.1

Q ss_pred             eEEEEcCCCcchH-HHHHHHHhC-CCcEEEE-ecCCCCCCCchhhHhhhhcCC-CeEEEEccCCChHHHHHHhc--CcCE
Q 040431            6 KILFIGGTGYIGK-FTVEASVKA-GHPTFVL-VRESTISGPSKSQLLDHFKNL-GVNLVIGDVLNHESLVKAIK--QVDV   79 (157)
Q Consensus         6 ~ilitGatG~iG~-~l~~~l~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~~~~--~~d~   79 (157)
                      +|.|.| +|.+|+ +++..+... +.+|+.+ +++     +++++...+..+. .....  ..+|.   ++++.  ++|+
T Consensus        35 riaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~-----~~~a~~~~~~~~i~~~~~~--~~~d~---~ell~~~~iD~  103 (221)
T d1h6da1          35 GYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGN-----AEKAKIVAAEYGVDPRKIY--DYSNF---DKIAKDPKIDA  103 (221)
T ss_dssp             EEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSC-----HHHHHHHHHHTTCCGGGEE--CSSSG---GGGGGCTTCCE
T ss_pred             EEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCC-----HHHHHHHHHhhcccccccc--ccCch---hhhccccccee
Confidence            799999 589996 566666554 5677744 555     5555544332211 11111  11232   23343  4777


Q ss_pred             EEEcCCCcc------------------------hHHHHHHHHHHHHhc
Q 040431           80 VISTVGHTL------------------------LADQVKIIAAIKEAE  103 (157)
Q Consensus        80 vv~~a~~~~------------------------~~~~~~l~~~~~~~~  103 (157)
                      |+-+.....                        ......+++++++.+
T Consensus       104 V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~  151 (221)
T d1h6da1         104 VYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAAN  151 (221)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred             eeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcC
Confidence            776555543                        444677777777765

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.22  E-value=0.77  Score=30.32  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEcc-------------------
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD-------------------   63 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D-------------------   63 (157)
                      +|-|.| -|+.|..++.++.+.+.   +.++++-+     .+.+   ... .....+..+.                   
T Consensus         3 ~IkViG-vGGaG~n~vn~~~~~~~~~v~~iainTD-----~~~L---~~~-~~~~ki~iG~~~t~G~Gagg~p~~g~~aa   72 (198)
T d1rq2a1           3 VIKVVG-IGGGGVNAVNRMIEQGLKGVEFIAINTD-----AQAL---LMS-DADVKLDVGRDSTRGLGAGADPEVGRKAA   72 (198)
T ss_dssp             CEEEEE-EHHHHHHHHHHHHHTTCCSEEEEEEESC-----HHHH---HHC-CCSEEEECCTTTC-----CCCHHHHHHHH
T ss_pred             eEEEEE-eCchHHHHHHHHHHcCCCCceEEEEcch-----HHHH---hcC-CcchhhccccccccCCCcCcChhhhHhhH
Confidence            466777 57779999999999874   34444433     1111   111 1222222221                   


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcc---hHHHHHHHHHHHHhcCCccEEEe
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTL---LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~---~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ..+.+++.+.++++|.||-.||...   .-.+.-+.+.+++.+ ...+-++
T Consensus        73 ~e~~~~I~~~l~~~d~vfi~AGlGGgTGtGaaPviA~iake~g-~l~v~iv  122 (198)
T d1rq2a1          73 EDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLG-ALTVGVV  122 (198)
T ss_dssp             HHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEEEecCCCCCcchHHHHHHHHHHcC-CcEEEEE
Confidence            1356778888889999999999987   444666888888887 5444443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.19  E-value=0.075  Score=37.12  Aligned_cols=32  Identities=16%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .|+|+|| |..|...+..|.+.|.+|+++.+.+
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            6999995 9999999999999999999999875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.02  E-value=0.075  Score=38.13  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=28.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|+| +|+-|..+|.+|.+.|++|.++-+..
T Consensus         9 dvIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIG-SGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            589999 59999999999999999999999863

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.96  E-value=0.1  Score=36.97  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=28.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEec
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVR   36 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r   36 (157)
                      .++|+|-| -|.+|+++++.|.+.|.+|+.++-
T Consensus        36 gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          36 DKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence            46899999 699999999999999999987763

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=91.68  E-value=0.095  Score=36.89  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHH-----hCCCcEEEEecCCCC
Q 040431            5 SKILFIGGTGYIGKFTVEASV-----KAGHPTFVLVRESTI   40 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~-----~~g~~v~~~~r~~~~   40 (157)
                      -.|+|.|| |-.|..++..|.     ..|++|+++.|.+..
T Consensus         8 yDV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           8 CDVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            36999996 999999999996     469999999987643

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.48  E-value=0.45  Score=30.03  Aligned_cols=101  Identities=23%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEE-EEccC---CChHHHHHHhc----
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNL-VIGDV---LNHESLVKAIK----   75 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~-~~~D~---~~~~~~~~~~~----   75 (157)
                      .+++.|++.+|+.|--+++.+...|-++--++       ++..+.+++........ -.+|+   .+++.+.++++    
T Consensus         3 G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~-------~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~   75 (163)
T d2csua3           3 GNKVAIMTNAGGPGVLTADELDKRGLKLATLE-------EKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ   75 (163)
T ss_dssp             SSEEEEEESCHHHHHHHHHHHHTTTCEECCCC-------HHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECChHHHHHHHHHHHHcCCccCCCC-------HHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHc
Confidence            56888999899999999999999997774332       33444444433221111 11233   24555555554    


Q ss_pred             --CcCEEEEcCCC------cchHHHHHHHHHHHHhcCCccEEEec
Q 040431           76 --QVDVVISTVGH------TLLADQVKIIAAIKEAEGASRGTLRT  112 (157)
Q Consensus        76 --~~d~vv~~a~~------~~~~~~~~l~~~~~~~~~~~~~v~~S  112 (157)
                        +.|.|+.....      ........+++++++.+ .++-+..+
T Consensus        76 d~~vd~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kpv~~~  119 (163)
T d2csua3          76 DPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVN-NEKPVLAM  119 (163)
T ss_dssp             STTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHC-CCCCEEEE
T ss_pred             CCCcCEEEEeeccCCcccccHHHHHHHHHHHHHHhc-CCCcEEEE
Confidence              57766432221      12455677888888776 44444433

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=91.30  E-value=0.13  Score=35.54  Aligned_cols=32  Identities=13%  Similarity=0.210  Sum_probs=28.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhC-CCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKA-GHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r~~   38 (157)
                      .|+|+|| |..|...+.+|.++ |++|.++.+.+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCCeEEEEecCC
Confidence            5999996 99999999999875 99999999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.27  E-value=0.79  Score=30.81  Aligned_cols=90  Identities=16%  Similarity=0.229  Sum_probs=61.5

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++||=.| |+|..-.++++..-. .-.|++++.+     +..++.+...  ...++..+..|..+++........+|+|
T Consensus        74 G~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s-----~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i  147 (227)
T d1g8aa_          74 GKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFS-----PRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESC-----HHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCc-----HHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEE
Confidence            46899899 678888888876532 4579999888     6555544332  2356888999998888776666678989


Q ss_pred             EEcCCCcchHHHHHHHHHHHH
Q 040431           81 ISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        81 v~~a~~~~~~~~~~l~~~~~~  101 (157)
                      ++......  ....++..+..
T Consensus       148 ~~d~~~~~--~~~~~l~~~~~  166 (227)
T d1g8aa_         148 FEDVAQPT--QAKILIDNAEV  166 (227)
T ss_dssp             EECCCSTT--HHHHHHHHHHH
T ss_pred             EEEccccc--hHHHHHHHHHH
Confidence            88766543  33445555443

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.26  E-value=0.15  Score=29.48  Aligned_cols=29  Identities=17%  Similarity=0.115  Sum_probs=24.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEE
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVL   34 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~   34 (157)
                      |||||.|+ |.=-.+++..|.++.+++++.
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~~v~~~   29 (90)
T d1vkza2           1 VRVHILGS-GGREHAIGWAFAKQGYEVHFY   29 (90)
T ss_dssp             CEEEEEEC-SHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCeEEEe
Confidence            58999995 666889999999988888876

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.13  Score=33.91  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      -.++|+|| |..|...+..+.+.|.+|.++.++.
T Consensus         3 yDvvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           3 YDYIAIGG-GSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            36899996 9999999999999999999998764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.19  E-value=0.19  Score=33.76  Aligned_cols=91  Identities=20%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ..+||.+| ||||...-++ .+.  |.+|+.+.+++.-. ....+.++...-.++.++.+|..+-..   .-...|.|+.
T Consensus        79 g~~VLeIGsGsGY~taila-~l~--g~~V~~ie~~~~l~-~~a~~~l~~~g~~nv~~~~gd~~~g~~---~~~pfD~Iiv  151 (215)
T d1jg1a_          79 GMNILEVGTGSGWNAALIS-EIV--KTDVYTIERIPELV-EFAKRNLERAGVKNVHVILGDGSKGFP---PKAPYDVIIV  151 (215)
T ss_dssp             TCCEEEECCTTSHHHHHHH-HHH--CSCEEEEESCHHHH-HHHHHHHHHTTCCSEEEEESCGGGCCG---GGCCEEEEEE
T ss_pred             cceEEEecCCCChhHHHHH-Hhh--CceeEEEeccHHHH-HHHHHHHHHcCCceeEEEECccccCCc---ccCcceeEEe
Confidence            46899888 5677554444 444  46798888873211 111123344445789999999864211   1235899998


Q ss_pred             cCCCcchHHHHHHHHHHHHhc
Q 040431           83 TVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        83 ~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .++...+  ...+++.++..|
T Consensus       152 ~~a~~~i--p~~l~~qL~~gG  170 (215)
T d1jg1a_         152 TAGAPKI--PEPLIEQLKIGG  170 (215)
T ss_dssp             CSBBSSC--CHHHHHTEEEEE
T ss_pred             ecccccC--CHHHHHhcCCCC
Confidence            8888652  345666664433

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.18  E-value=0.29  Score=32.88  Aligned_cols=86  Identities=17%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++||=.| |+|.    ++..|++.|.+|+.++.+     ++.++..++   ....++.++.+|+.+.+    .-...|.
T Consensus        38 ~~~vLDiGCG~G~----~~~~l~~~g~~v~GvD~S-----~~ml~~A~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~  104 (246)
T d1y8ca_          38 FDDYLDLACGTGN----LTENLCPKFKNTWAVDLS-----QEMLSEAENKFRSQGLKPRLACQDISNLN----INRKFDL  104 (246)
T ss_dssp             TTEEEEETCTTST----THHHHGGGSSEEEEECSC-----HHHHHHHHHHHHHTTCCCEEECCCGGGCC----CSCCEEE
T ss_pred             CCeEEEEeCcCCH----HHHHHHHhCCccEeeccc-----hhhhhhccccccccCccceeeccchhhhc----ccccccc
Confidence            35788888 4454    455666789999999877     544443222   22447899999997643    1236899


Q ss_pred             EEEcCCCcc----hHHHHHHHHHHHHh
Q 040431           80 VISTVGHTL----LADQVKIIAAIKEA  102 (157)
Q Consensus        80 vv~~a~~~~----~~~~~~l~~~~~~~  102 (157)
                      |+...+...    ......+++.+.+.
T Consensus       105 i~~~~~~~~~~~~~~~~~~~l~~~~~~  131 (246)
T d1y8ca_         105 ITCCLDSTNYIIDSDDLKKYFKAVSNH  131 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTT
T ss_pred             cceeeeeeeccCCHHHHHHHHHHHHHh
Confidence            987544332    33444455555443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.05  E-value=0.091  Score=36.44  Aligned_cols=31  Identities=13%  Similarity=0.164  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEe
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV   35 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~   35 (157)
                      .++++|-| -|.+|+++++.|.+.|.+|+.++
T Consensus        36 g~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs   66 (255)
T d1bgva1          36 GKTVALAG-FGNVAWGAAKKLAELGAKAVTLS   66 (255)
T ss_dssp             TCEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence            57899999 69999999999999999998775

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.74  E-value=0.096  Score=34.77  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      |.++-.|+|+|| |-.|...+.++.+.|.+|.++.+.+
T Consensus         2 m~~~yDviVIG~-GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           2 INKSHDVVIIGG-GPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCcccCEEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            333447999995 9999999999999999999998753

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.48  E-value=0.53  Score=29.92  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=18.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA   27 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~   27 (157)
                      +++|.|.| +|++|+..++.|.+.
T Consensus         7 k~kv~iIG-~G~~g~~h~~~l~~~   29 (172)
T d1lc0a1           7 KFGVVVVG-VGRAGSVRLRDLKDP   29 (172)
T ss_dssp             SEEEEEEC-CSHHHHHHHHHHTSH
T ss_pred             CcEEEEEc-CCHHHHHHHHHHHhC
Confidence            46899999 599999988888654

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.42  E-value=1.1  Score=29.49  Aligned_cols=95  Identities=18%  Similarity=0.118  Sum_probs=60.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCC---cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEcc-------------------
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGH---PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD-------------------   63 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D-------------------   63 (157)
                      +|.|.| -|+.|..++.++.+.+.   +.++++-+.......         +....+..++                   
T Consensus         3 ~IkViG-vGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~---------~~~~ki~iG~~~~~g~G~gg~p~~g~~aa   72 (198)
T d1ofua1           3 VIKVIG-VGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNI---------AARTVLQLGPGVTKGLGAGANPEVGRQAA   72 (198)
T ss_dssp             CEEEEE-EHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSC---------SCSEEEECCHHHHTTBCCCSCHHHHHHHH
T ss_pred             eEEEEE-ECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcC---------CccceeccccccccCCCCCCChHHHHHHH
Confidence            578888 58889999999999874   455555443211100         0111111111                   


Q ss_pred             CCChHHHHHHhcCcCEEEEcCCCcc---hHHHHHHHHHHHHhcCCccEEEe
Q 040431           64 VLNHESLVKAIKQVDVVISTVGHTL---LADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        64 ~~~~~~~~~~~~~~d~vv~~a~~~~---~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ..+.+.+.+.+++.|.||-.||...   .-.+.-+.+.+++.+ ...+-++
T Consensus        73 ~e~~~~I~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake~g-~lvvaiv  122 (198)
T d1ofua1          73 LEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMG-ILTVAVV  122 (198)
T ss_dssp             HHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             HHHHHHHHHHhCCCCeEEEEecCCCCccccHHHHHHHHHHHcC-CCEEEEE
Confidence            1256678888889999999999987   444566788888887 5444333

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.32  E-value=0.74  Score=29.53  Aligned_cols=99  Identities=19%  Similarity=0.077  Sum_probs=58.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH-hhhhc-----CCCe------------EEEEccCCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL-LDHFK-----NLGV------------NLVIGDVLN   66 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~~-----~~~v------------~~~~~D~~~   66 (157)
                      |||.|=| =|.||+.+.+.|.+.+.+|+++.-. .+  .+.... ++...     ...+            .+....-.|
T Consensus         1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd~-~~--~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGING-FGRIGRQVFRILHSRGVEVALINDL-TD--NKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECS-SC--HHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECCC-cc--hhhhhheeecccccCccccccccccceeEecceeEEEEecCC
Confidence            4788888 7999999999999999998887632 21  222222 22110     0111            111122235


Q ss_pred             hHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           67 HESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        67 ~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ++++.=.-.++|+|+-+.|.+.   +...+..-.+.| .++++..
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~---~~~~~~~hl~~g-akkViiS  117 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFT---DADKAKAHLEGG-AKKVIIT  117 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCC---BHHHHTHHHHTT-CSEEEES
T ss_pred             hHHCcccccCCceeEecccccc---chHHhhhhhccc-cceeeec
Confidence            5544322237899999999986   333444444566 7777763

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.28  E-value=0.095  Score=38.27  Aligned_cols=33  Identities=9%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHh------CCCcEEEEecCCC
Q 040431            6 KILFIGGTGYIGKFTVEASVK------AGHPTFVLVREST   39 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~------~g~~v~~~~r~~~   39 (157)
                      .|+|+|| |-.|...+..|++      .|.+|.++.|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            7999996 9999999999987      7999999998854

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.16  E-value=0.15  Score=35.89  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      ..|+|+|| |..|...+..|.+.|.+|+++.+.+
T Consensus        24 ~DVvVIG~-G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGS-GGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECS-SHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46999994 9999999999999999999999865

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.99  E-value=0.19  Score=32.96  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .-.++|+|| |..|...+..+.+.|.+|.++.+..
T Consensus         3 ~yDvvVIGg-GpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           3 ENDVVIIGG-GPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            457999996 9999999999999999999998764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.66  E-value=0.19  Score=29.67  Aligned_cols=35  Identities=9%  Similarity=-0.003  Sum_probs=29.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .++|+|.| +|.-|.-++..|.+...+++...|.+.
T Consensus        32 gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          32 GESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            57899999 589999999999988888777666643

>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.73  Score=30.55  Aligned_cols=96  Identities=15%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             CeEEEEcCCCcchHH-HH---HHHHhCC-----CcEEEEecCCCCCC-------------CchhhHhhhhcCCCeEEEEc
Q 040431            5 SKILFIGGTGYIGKF-TV---EASVKAG-----HPTFVLVRESTISG-------------PSKSQLLDHFKNLGVNLVIG   62 (157)
Q Consensus         5 ~~ilitGatG~iG~~-l~---~~l~~~g-----~~v~~~~r~~~~~~-------------~~~~~~~~~~~~~~v~~~~~   62 (157)
                      -+++|+||||=+..- |.   -+|...|     ..|+.+.|++.+.+             .+....+.++ ...+.++.+
T Consensus        21 ~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f-~~~~~Y~~~   99 (203)
T d1qkia1          21 HIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDF-FARNSYVAG   99 (203)
T ss_dssp             EEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHH-HTTEECCBC
T ss_pred             cEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHH-HHhhccccC
Confidence            479999999987652 22   2233434     46888888764310             0111122222 246888999


Q ss_pred             cCCChHHHHHHhc---------CcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           63 DVLNHESLVKAIK---------QVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        63 D~~~~~~~~~~~~---------~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      |++|+++..++-.         ....|+.+|-+..  ....+++.+.+.+
T Consensus       100 d~~~~~~~~~L~~~l~~~~~~~~~~rifYLAvpP~--~f~~i~~~L~~~~  147 (203)
T d1qkia1         100 QYDDAASYQRLNSHMNALHLGSQANRLFYLALPPT--VYEAVTKNIHESC  147 (203)
T ss_dssp             CTTCHHHHHHHHHHHHHTTTTTTSEEEEEECSCHH--HHHHHHHHHHHHS
T ss_pred             cCCChhhHHHHHHHHHHHhcCCCcceEEEEecCHH--HHHHHHHHHHHhc
Confidence            9999888766522         2457888877754  3345666666655

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.37  E-value=0.27  Score=33.56  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCCcchHH-----HHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKF-----TVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~-----l~~~l~~~g~~v~~~~r~~~   39 (157)
                      |++|.|+| =|++|+-     |+..|.+.|++|.+++-++.
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            57899998 8888875     55688889999999999864

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=89.25  E-value=0.88  Score=29.21  Aligned_cols=99  Identities=13%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhh-Hhhhhc-----CCCeE------------EEEccCCCh
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQ-LLDHFK-----NLGVN------------LVIGDVLNH   67 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~-----~~~v~------------~~~~D~~~~   67 (157)
                      ||.|-| =|.||+.+.+.+++.+.+|+.+.-...+  .+.+. +++...     +..+.            +....-.++
T Consensus         2 kIgING-fGRIGR~~~R~~~~~~~~ivaINd~~~~--~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p   78 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEMGAQVVAVNDPFIA--LEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP   78 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECTTSC--HHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhCCCcEEEECCCCcC--HHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh
Confidence            677888 7999999999999999888877533211  22222 222110     11111            111122355


Q ss_pred             HHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           68 ESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        68 ~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +++.=.-.++|+|+-+.|.+.   +..-+..-.+.| .++++..
T Consensus        79 ~~i~W~~~gvD~ViEcTG~f~---~~~~~~~hl~~g-akkViis  118 (169)
T d1dssg1          79 ENIPWSKAGAEYIVESTGVFT---TIEKASAHFKGG-AKKVIIS  118 (169)
T ss_dssp             GGCCHHHHTCCEEEECSSSCC---SHHHHGGGGTTT-CSEEEES
T ss_pred             HHCCccccCCCEEEecCceEc---CHHHHHHHHhcC-CceEeec
Confidence            544222237999999999986   222333333456 6776653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.22  E-value=0.97  Score=30.02  Aligned_cols=86  Identities=19%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .++||=.|. |. |.. +..|++.|++|++++.+     +.-++..++   ..+.++.++.+|+.+.+.    -...|.|
T Consensus        42 ~~~iLDiGc-Gt-G~~-~~~l~~~~~~v~gvD~s-----~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~----~~~fD~I  109 (251)
T d1wzna1          42 VRRVLDLAC-GT-GIP-TLELAERGYEVVGLDLH-----EEMLRVARRKAKERNLKIEFLQGDVLEIAF----KNEFDAV  109 (251)
T ss_dssp             CCEEEEETC-TT-CHH-HHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCCCEEEESCGGGCCC----CSCEEEE
T ss_pred             CCEEEEeCC-CC-Ccc-chhhcccceEEEEEeec-----cccccccccccccccccchheehhhhhccc----ccccchH
Confidence            357888883 32 433 55677889999999877     544443322   224478999999876431    1357988


Q ss_pred             EEcCCCcc---hHHHHHHHHHHHH
Q 040431           81 ISTVGHTL---LADQVKIIAAIKE  101 (157)
Q Consensus        81 v~~a~~~~---~~~~~~l~~~~~~  101 (157)
                      +..-+...   ......+++.+.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~  133 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAE  133 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHH
Confidence            87543322   2333444444443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=89.18  E-value=1.3  Score=28.45  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCC----CcEEEEecCCCCCCCchhh-Hhhhhc-----CCCeE------------EEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAG----HPTFVLVRESTISGPSKSQ-LLDHFK-----NLGVN------------LVI   61 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g----~~v~~~~r~~~~~~~~~~~-~~~~~~-----~~~v~------------~~~   61 (157)
                      ++||.|=| =|.||+.+.+.+++.+    .+|+.+. +. .. .+... +++...     +..+.            ...
T Consensus         1 tikigING-fGRIGR~v~R~~~~~~~~~~~~vvaIN-d~-~~-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i   76 (173)
T d1obfo1           1 TIRVAING-YGRIGRNILRAHYEGGKSHDIEIVAIN-DL-GD-PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRV   76 (173)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEE-CS-SC-HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEE
T ss_pred             CeEEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEc-CC-CC-hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEE
Confidence            35888888 7999999999999754    2444443 22 21 33332 222110     11111            111


Q ss_pred             ccCCChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           62 GDVLNHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        62 ~D~~~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      ..-.|++++.=.-.++|+|+-+.|.+.   +..-+..-.+.| .++++..
T Consensus        77 ~~~~~p~~i~W~~~gvDiViEcTG~f~---~~~~a~~hl~~G-akkViiS  122 (173)
T d1obfo1          77 DANRNPAQLPWGALKVDVVLECTGFFT---TKEKAGAHIKGG-AKKVIIS  122 (173)
T ss_dssp             ECCSCGGGSCTTTTTCSEEEECSSSCC---SHHHHHHHHHHT-CSEEEES
T ss_pred             EecCCHHHCcccccccceEEEeccccc---CHHHHHHHhccC-CcceEEe
Confidence            112345543322227899999999975   333333344556 6777654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.13  E-value=0.77  Score=30.74  Aligned_cols=90  Identities=12%  Similarity=0.116  Sum_probs=57.2

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCC----cEEEEecCCCCCCCchhhHhh---------hhcCCCeEEEEccCCChHH
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGH----PTFVLVRESTISGPSKSQLLD---------HFKNLGVNLVIGDVLNHES   69 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~----~v~~~~r~~~~~~~~~~~~~~---------~~~~~~v~~~~~D~~~~~~   69 (157)
                      ..+||..| ||||....+++.+...|.    +|+.+.+.     ++..+...         .....++.++.+|..+-..
T Consensus        81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~-----~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~  155 (223)
T d1r18a_          81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQ-----AELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP  155 (223)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESC-----HHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred             CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecC-----HHHHHHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence            46899999 788888777777777763    79888877     33322111         1123578999999864211


Q ss_pred             HHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           70 LVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        70 ~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                         --..+|.|+..++...+  ...+++.++..|
T Consensus       156 ---~~~~fD~Iiv~~a~~~~--p~~l~~~Lk~gG  184 (223)
T d1r18a_         156 ---PNAPYNAIHVGAAAPDT--PTELINQLASGG  184 (223)
T ss_dssp             ---GGCSEEEEEECSCBSSC--CHHHHHTEEEEE
T ss_pred             ---cccceeeEEEEeechhc--hHHHHHhcCCCc
Confidence               11358999998887652  234555554433

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.99  E-value=0.55  Score=30.96  Aligned_cols=68  Identities=19%  Similarity=0.217  Sum_probs=45.9

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCC-cEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGH-PTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVI   81 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv   81 (157)
                      .++|+=.| |||.+|    -.++..|. +|+.++.+     +..++...+. ..++.++.+|+.+.+      ..+|+||
T Consensus        49 Gk~VLDlGcGtG~l~----i~a~~~ga~~V~~vDid-----~~a~~~ar~N-~~~~~~~~~D~~~l~------~~fD~Vi  112 (197)
T d1ne2a_          49 GRSVIDAGTGNGILA----CGSYLLGAESVTAFDID-----PDAIETAKRN-CGGVNFMVADVSEIS------GKYDTWI  112 (197)
T ss_dssp             TSEEEEETCTTCHHH----HHHHHTTBSEEEEEESC-----HHHHHHHHHH-CTTSEEEECCGGGCC------CCEEEEE
T ss_pred             CCEEEEeCCCCcHHH----HHHHHcCCCcccccccC-----HHHHHHHHHc-cccccEEEEehhhcC------CcceEEE
Confidence            46788888 445443    34556674 69999887     5555544443 357899999986543      4689999


Q ss_pred             EcCCCc
Q 040431           82 STVGHT   87 (157)
Q Consensus        82 ~~a~~~   87 (157)
                      .|..+.
T Consensus       113 ~NPPfg  118 (197)
T d1ne2a_         113 MNPPFG  118 (197)
T ss_dssp             ECCCC-
T ss_pred             eCcccc
Confidence            997764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.92  E-value=0.51  Score=31.32  Aligned_cols=35  Identities=14%  Similarity=0.285  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHH--------------------hCC-CcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASV--------------------KAG-HPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~--------------------~~g-~~v~~~~r~~~   39 (157)
                      .++|+|+|+ |.++.-+++.|+                    ..| .+|+++.|...
T Consensus        39 gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            578999995 999999999887                    455 46999998854

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=88.81  E-value=0.23  Score=35.65  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|+| +|.-|.-+|.+|.+.|.+|.++-+..
T Consensus         4 D~IIVG-sG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVG-AGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            589999 58999999999999999999999874

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.77  E-value=0.31  Score=32.22  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCcchH-----HHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGK-----FTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~-----~l~~~l~~~g~~v~~~~r~   37 (157)
                      .+.|.|+|+-|++|+     .|+..|.+.|++|.+++-+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            567999999999997     4677778889999999865

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.71  E-value=0.22  Score=36.86  Aligned_cols=31  Identities=23%  Similarity=0.154  Sum_probs=23.4

Q ss_pred             CeEEEEcC-------CCcch---HHHHHHHHhCCCcEEEEe
Q 040431            5 SKILFIGG-------TGYIG---KFTVEASVKAGHPTFVLV   35 (157)
Q Consensus         5 ~~ilitGa-------tG~iG---~~l~~~l~~~g~~v~~~~   35 (157)
                      |||+....       +|++|   .+|+++|.++||+|.+++
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~   41 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLI   41 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45666543       36655   678999999999999985

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.71  E-value=0.19  Score=35.25  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      ..|+|+| +|..|...+.++.+.|.+|+++.+.+
T Consensus        20 ~DVvVIG-aG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVG-AGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3699999 49999999999999999999998865

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=88.68  E-value=0.25  Score=34.01  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhh-cCCCeEEEEccCCChHHHHHHhcCc
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHF-KNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~-~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      .++|+=.| |+|.+..++++.+.. +-+|+.++++     ++.++..    +++ ...++.+...|+.+.-.    -..+
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~-----e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~----~~~f  155 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYALNG-KGTLTVVERD-----EDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS----DQMY  155 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSC-----HHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC----SCCE
T ss_pred             cCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECC-----HHHHHHHHHHHHHhcCCCceEEEEeeeecccc----ccee
Confidence            46888888 677777888877743 3578888887     5444432    222 23578888888865310    0246


Q ss_pred             CEEEEcCCC
Q 040431           78 DVVISTVGH   86 (157)
Q Consensus        78 d~vv~~a~~   86 (157)
                      |.|+.....
T Consensus       156 D~V~ld~p~  164 (250)
T d1yb2a1         156 DAVIADIPD  164 (250)
T ss_dssp             EEEEECCSC
T ss_pred             eeeeecCCc
Confidence            777765443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.65  E-value=0.37  Score=31.81  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCCcchH-----HHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGK-----FTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~-----~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      ||.|.|+++-|++|+     +|+..|.+.|++|.+++-+..
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~   41 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   41 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            568999999999997     567788888999999987653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=0.19  Score=32.47  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|+|.|| |..|..-+..+.+.|.+|+++.+..
T Consensus         5 ~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGS-GPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEEeec
Confidence            357999996 9999999999999999999998654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=0.3  Score=31.03  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      .|+|.|| |..|...+..+.+.|.+|.++.+.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCCeEEEEEEe
Confidence            5899995 999999999999999999999865

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.26  Score=32.68  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC--cEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH--PTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~--~v~~~~r~~   38 (157)
                      ...++|.|| |++|-.++..|.+.++  +|+++++.+
T Consensus         4 ~~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           4 HVPFLLIGG-GTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            346889985 9999999999988876  588887653

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.2  Score=35.27  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431           12 GTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus        12 atG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      +||..|.++|+.+...|++|+.+.+..+
T Consensus        44 SSGk~G~alA~~~~~~Ga~V~li~g~~s   71 (290)
T d1p9oa_          44 SSGRRGATSAEAFLAAGYGVLFLYRARS   71 (290)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred             CchHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            5799999999999999999999987644

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=1.8  Score=25.99  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      ..+|+|-|-||..|+.-++..++.|-+|++-....
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPg   40 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPG   40 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccC
Confidence            46899999999999999999999999998776653

>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methionine synthase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.27  E-value=2.3  Score=26.72  Aligned_cols=70  Identities=17%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             chHHHHHHHHhC-CCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhc--CcCEEEEcCCCcc-hHH
Q 040431           16 IGKFTVEASVKA-GHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVVISTVGHTL-LAD   91 (157)
Q Consensus        16 iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~--~~d~vv~~a~~~~-~~~   91 (157)
                      +|..++..+++. ||+|+-+..+                           ..++++.+++.  ++|+|.-.+-... ...
T Consensus        21 iG~~iv~~~l~~~G~~Vi~LG~~---------------------------~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~   73 (156)
T d3bula2          21 IGKNIVGVVLQCNNYEIVDLGVM---------------------------VPAEKILRTAKEVNADLIGLSGLITPSLDE   73 (156)
T ss_dssp             HHHHHHHHHHHTTTCEEEECCSS---------------------------BCHHHHHHHHHHHTCSEEEEECCSTHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEECCCC---------------------------CCHHHHHHHHHhhCCCEEEEecccccchHH
Confidence            688887777665 7888766544                           13444444443  6888776666554 555


Q ss_pred             HHHHHHHHHHhcCCccEEEecc
Q 040431           92 QVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        92 ~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                      .+.+++.+++.+ ....++++.
T Consensus        74 ~~~~~~~l~~~g-~~~~vivGG   94 (156)
T d3bula2          74 MVNVAKEMERQG-FTIPLLIGG   94 (156)
T ss_dssp             HHHHHHHHHHTT-CCSCEEEES
T ss_pred             HHHHHHHHHhcc-ccceEEEec
Confidence            777888888887 444455554

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.23  E-value=0.25  Score=32.56  Aligned_cols=33  Identities=27%  Similarity=0.443  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      ..++|+|| |..|...+..+.+.|.+|.++.++.
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            47999994 9999999999999999999998763

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.18  E-value=0.66  Score=30.98  Aligned_cols=35  Identities=9%  Similarity=0.199  Sum_probs=28.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC--------------------C-CcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA--------------------G-HPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~--------------------g-~~v~~~~r~~~   39 (157)
                      .++|+|.|+ |.++.-+++.|++.                    | .+|+++.|...
T Consensus        39 gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            578999995 99999999999883                    5 47999998753

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.11  E-value=0.42  Score=32.55  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-CCcEEEEec
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-GHPTFVLVR   36 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g~~v~~~~r   36 (157)
                      .++|+|-| -|.+|+++++.|.+. |.+|+.++-
T Consensus        32 g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1          32 GKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccc
Confidence            47899999 699999999999864 888887653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.10  E-value=0.18  Score=33.40  Aligned_cols=82  Identities=21%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCC-------cEEEEecCCCCC-------CCc---h---hh-HhhhhcCCCeEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGH-------PTFVLVRESTIS-------GPS---K---SQ-LLDHFKNLGVNLVIG   62 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~-------~v~~~~r~~~~~-------~~~---~---~~-~~~~~~~~~v~~~~~   62 (157)
                      +.+|+|+| +|--|...|.+|.+.|+       +|+++.+.+..-       .+.   .   .. ........++.+...
T Consensus         2 p~~VaVIG-aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (239)
T d1lqta2           2 PYYIAIVG-SGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN   80 (239)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred             CcEEEEEC-cCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEE
Confidence            45899999 59999999999999884       799999876211       011   0   01 112223456666543


Q ss_pred             -cCCChHHHHHHhcCcCEEEEcCCC
Q 040431           63 -DVLNHESLVKAIKQVDVVISTVGH   86 (157)
Q Consensus        63 -D~~~~~~~~~~~~~~d~vv~~a~~   86 (157)
                       .+.....+.++....|.++...|.
T Consensus        81 ~~v~~~~~~~~~~~~~~~v~~atGa  105 (239)
T d1lqta2          81 VVVGEHVQPGELSERYDAVIYAVGA  105 (239)
T ss_dssp             CCBTTTBCHHHHHHHSSEEEECCCC
T ss_pred             EEeccccchhhhhccccceeeecCC
Confidence             333334445555567888877664

>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=2  Score=25.63  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEE-----ccCCChHHHHHHhc--C
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI-----GDVLNHESLVKAIK--Q   76 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~-----~D~~~~~~~~~~~~--~   76 (157)
                      .+||||.- -|=+.--+++.+.+.|.+.+++....+.. .....    ..+ ....+.     -.+.|.+.+.++.+  +
T Consensus         2 ~~kvLIAN-RGeiA~Ri~ra~~elgi~tvavys~~D~~-~~h~~----~ad-e~v~lg~~~~~~sYl~~~~Ii~~A~~~~   74 (114)
T d2j9ga2           2 LDKIVIAN-RGEIALRILRACKELGIKTVAVHSSADRD-LKHVL----LAD-ETVCIGPAPSVKSYLNIPAIISAAEITG   74 (114)
T ss_dssp             CSEEEECC-CHHHHHHHHHHHHHHTCEEEEEEEGGGTT-CHHHH----HSS-EEEEEECSSGGGTTTCHHHHHHHHHHHT
T ss_pred             CceeeEec-CCHHHHHHHHHHHHhCCceEEEecccccc-cccee----cCC-ceeecCCCchhhhhcCHHHHHHHHHHhC
Confidence            57888877 68899999999999998876665443221 11111    111 111221     13567888877776  6


Q ss_pred             cCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           77 VDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        77 ~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +|.|-  .|.........+.+++.+.|    ++|+
T Consensus        75 ~dAiH--PGyGFLSEn~~Fa~~~~~ag----i~FI  103 (114)
T d2j9ga2          75 AVAIH--PGYGFLSENANFAEQVERSG----FIFI  103 (114)
T ss_dssp             CSEEE--CCSSTTTTCHHHHHHHHHTT----CEES
T ss_pred             Cceee--cchhhhhhhHHHHHHHHHCC----CEEE
Confidence            88665  56655555667888888877    5565

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.64  Score=30.88  Aligned_cols=75  Identities=11%  Similarity=0.051  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---------------------hcCCCeEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---------------------FKNLGVNLVIG   62 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---------------------~~~~~v~~~~~   62 (157)
                      ..+||..| +|. |. .+..|++.|++|+.++-+     +..++..+.                     ....++.++.+
T Consensus        46 ~~rvLd~G-CG~-G~-~a~~LA~~G~~V~gvD~S-----~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  117 (229)
T d2bzga1          46 GLRVFFPL-CGK-AV-EMKWFADRGHSVVGVEIS-----ELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC  117 (229)
T ss_dssp             SCEEEETT-CTT-CT-HHHHHHHTTCEEEEECSC-----HHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             CCEEEEeC-CCC-cH-HHHHHHhCCCcEEEEeCC-----HHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence            46899999 333 43 366777889999999887     433332211                     12346888999


Q ss_pred             cCCChHHHHHHhcCcCEEEEcCCCcc
Q 040431           63 DVLNHESLVKAIKQVDVVISTVGHTL   88 (157)
Q Consensus        63 D~~~~~~~~~~~~~~d~vv~~a~~~~   88 (157)
                      |+.+....  .-...|+|+.......
T Consensus       118 d~~~l~~~--~~~~fd~i~~~~~l~~  141 (229)
T d2bzga1         118 SIFDLPRT--NIGKFDMIWDRGALVA  141 (229)
T ss_dssp             CGGGGGGS--CCCCEEEEEESSSTTT
T ss_pred             chhhcccc--ccCceeEEEEEEEEEe
Confidence            88664421  1124688877665544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.84  E-value=0.31  Score=31.52  Aligned_cols=34  Identities=9%  Similarity=0.150  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      ..+|+|.|| |..|...+..|.+.|.+++++.+..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCCcEEEEEeec
Confidence            468999995 9999999999999999999987653

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.54  E-value=2.2  Score=25.97  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      ..+|+|-|-||..|+.-+++.++.|-+|++-+...
T Consensus        15 ~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPg   49 (130)
T d1euca1          15 NTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPG   49 (130)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccC
Confidence            45899999999999999999999999998776553

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=86.49  E-value=2  Score=30.60  Aligned_cols=72  Identities=24%  Similarity=0.362  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-C-CcEEEEecCCCCCCCchhhHhh-hhcC-CCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-G-HPTFVLVRESTISGPSKSQLLD-HFKN-LGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g-~~v~~~~r~~~~~~~~~~~~~~-~~~~-~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .+++.|+| +|..+..-++.+... + .+|++.+|+     +++.+.+. +... .++.+..+     ++++++++++|+
T Consensus       128 a~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~-----~~~~~~~~~~l~~~~g~~v~~~-----~s~~eav~~ADI  196 (340)
T d1x7da_         128 ARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTD-----PLATAKLIANLKEYSGLTIRRA-----SSVAEAVKGVDI  196 (340)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSS-----HHHHHHHHHHHTTCTTCEEEEC-----SSHHHHHTTCSE
T ss_pred             CceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecC-----hHHHHHHHHhhhhccCCCceec-----CCHHHHHhcCCc
Confidence            36889999 699999888888654 4 579999998     65554333 3322 35655554     336678889999


Q ss_pred             EEEcCCC
Q 040431           80 VISTVGH   86 (157)
Q Consensus        80 vv~~a~~   86 (157)
                      |+-+.+.
T Consensus       197 i~t~Tas  203 (340)
T d1x7da_         197 ITTVTAD  203 (340)
T ss_dssp             EEECCCC
T ss_pred             eeecccc
Confidence            9876543

>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Leuconostoc mesenteroides [TaxId: 1245]

Probab=86.37  E-value=3  Score=27.16  Aligned_cols=100  Identities=18%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             CCCCCeEE-EEcCCCcchHHH----HHHHHhCC-----CcEEEEecCCCCCCCchhhH----hhh---------hcCCCe
Q 040431            1 MASKSKIL-FIGGTGYIGKFT----VEASVKAG-----HPTFVLVRESTISGPSKSQL----LDH---------FKNLGV   57 (157)
Q Consensus         1 M~~~~~il-itGatG~iG~~l----~~~l~~~g-----~~v~~~~r~~~~~~~~~~~~----~~~---------~~~~~v   57 (157)
                      |++.++++ |+||||=+.+--    .-+|...|     ..|+.+.|+.... .+-.+.    +++         .....+
T Consensus         1 ~~e~~t~lVIFGaTGDLa~RKL~PAL~~L~~~g~lp~~~~Iig~aR~~~~~-e~f~~~v~~~l~~~~~~~~~~~~~~~~~   79 (195)
T d1h9aa1           1 VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALND-DEFKQLVRDSIKDFTDDQAQAEAFIEHF   79 (195)
T ss_dssp             CCCCCEEEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCH-HHHHHHHHHHHGGGCSCHHHHHHHHTTE
T ss_pred             CCCCceEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCCEEEEEECCcCcH-HHHHHHHHHHHhhccchHhhHHHHhhcc
Confidence            66556555 789999877531    12222333     3688888875432 111111    111         112467


Q ss_pred             EEEEccCCChHHHHHH---hc--------CcCEEEEcCCCcchHHHHHHHHHHHHhc
Q 040431           58 NLVIGDVLNHESLVKA---IK--------QVDVVISTVGHTLLADQVKIIAAIKEAE  103 (157)
Q Consensus        58 ~~~~~D~~~~~~~~~~---~~--------~~d~vv~~a~~~~~~~~~~l~~~~~~~~  103 (157)
                      .++.+|+.++++..++   +.        ....++.+|-+..  ....+++.+.+.+
T Consensus        80 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~rifYLAvpP~--~F~~i~~~L~~~~  134 (195)
T d1h9aa1          80 SYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPR--FFGTIAKYLKSEG  134 (195)
T ss_dssp             EEEECCTTCTTTHHHHHHHHHHHHHHHTCCSCEEEEECSCGG--GHHHHHHHHHHTT
T ss_pred             ceeeEeeccHhhHHHHHHHHHHHHhhcCCCcceEEEEecCHH--HHHHHHHHHHHhh
Confidence            8888888876554433   21        2346777776654  2334555555554

>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein YNL200c (YNU0 YEAST)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.34  E-value=2  Score=29.05  Aligned_cols=96  Identities=11%  Similarity=0.047  Sum_probs=51.3

Q ss_pred             EEEEc--CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEcC
Q 040431            7 ILFIG--GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVISTV   84 (157)
Q Consensus         7 ilitG--atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~a   84 (157)
                      +++.|  -+|+=|..++++|.+.|++|.++........+.....+.......+.....+..+.... ......|+||+..
T Consensus        59 lil~G~GNNGGDGl~~Ar~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~iVDal  137 (243)
T d1jzta_          59 FVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEY-LKPEKTLCIVDAI  137 (243)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCEECSSTTCGGGG-GSTTTEEEEEEES
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCeeEEEEeCCCcCCHHHHHHHHHHHHCCCceecccccchhhc-cccccccEEEEee
Confidence            44554  34777889999999999998877654332212222222233333444444433332211 1134678888743


Q ss_pred             CCcc-----hHHHHHHHHHHHHhc
Q 040431           85 GHTL-----LADQVKIIAAIKEAE  103 (157)
Q Consensus        85 ~~~~-----~~~~~~l~~~~~~~~  103 (157)
                      =-..     ......+++.+.+..
T Consensus       138 ~G~Gl~~~l~~~~~~li~~iN~~~  161 (243)
T d1jzta_         138 FGFSFKPPMREPFKGIVEELCKVQ  161 (243)
T ss_dssp             CCTTCCSSCCTTHHHHHHHHHHHT
T ss_pred             ecccccCcccHHHHHHHHHHHHhC
Confidence            2221     223566777777654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=86.32  E-value=0.61  Score=31.98  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=54.3

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh-----hcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH-----FKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      ..+||=+| |+|.....++++.   |.+|++++-+     +..++...+     ....++.++.+|..+... .  -..+
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~~---~~~v~gvD~s-----~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~-~--~~sf  136 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRKF---GVSIDCLNIA-----PVQNKRNEEYNNQAGLADNITVKYGSFLEIPC-E--DNSY  136 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH---CCEEEEEESC-----HHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS-C--TTCE
T ss_pred             CCEEEEeCCCCcHHHhhhhccC---CcEEEEEecc-----chhhhhhhcccccccccccccccccccccccc-c--cccc
Confidence            46888888 4555444444332   7899999877     433332221     123579999999976431 0  1257


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHh-cCCccEEEe
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEA-EGASRGTLR  111 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~-~~~~~~v~~  111 (157)
                      |+|+..-....+.....++..+... +..+++++.
T Consensus       137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence            9998876655433333444444332 101355554

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.31  E-value=1.5  Score=28.44  Aligned_cols=68  Identities=21%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      .++|.|+| -|-.|.+=+..|.++|.+|++--|..+.. -+++      ...+.        +.-++.++.+.+|+|..+
T Consensus        16 ~k~IaViG-YGsQG~AhAlNLrDSG~~V~VGLr~gs~s-~~~A------~~~Gf--------~v~~~~eA~~~aDiim~L   79 (182)
T d1np3a2          16 GKKVAIIG-YGSQGHAHACNLKDSGVDVTVGLRSGSAT-VAKA------EAHGL--------KVADVKTAVAAADVVMIL   79 (182)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECCTTCHH-HHHH------HHTTC--------EEECHHHHHHTCSEEEEC
T ss_pred             CCEEEEEe-eCcHhHHHHhhhhhcCCCEEEEcCCCCcc-HHHH------hhhcc--------ccccHHHHhhhcCeeeee
Confidence            57899999 89999999999999999999887774311 1111      11122        334566778889999888


Q ss_pred             CCCc
Q 040431           84 VGHT   87 (157)
Q Consensus        84 a~~~   87 (157)
                      ....
T Consensus        80 ~PD~   83 (182)
T d1np3a2          80 TPDE   83 (182)
T ss_dssp             SCHH
T ss_pred             cchH
Confidence            7753

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=86.27  E-value=0.63  Score=30.33  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=24.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEe
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV   35 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~   35 (157)
                      .++++|.||.|+ |+.+.+-+.+.++++..+.
T Consensus         2 ~kkl~i~Gagg~-~~~v~di~~~~~~~~~~f~   32 (193)
T d3bswa1           2 TEKIYIYGASGH-GLVCEDVAKNMGYKECIFL   32 (193)
T ss_dssp             CSEEEEEC--CH-HHHHHHHHHHHTCCEEEEC
T ss_pred             CCEEEEEcCCHh-HHHHHHHHHhCCCcEEEEE
Confidence            578999997655 8999999888899887664

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.26  E-value=0.38  Score=33.65  Aligned_cols=32  Identities=31%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .|+|+| +|..|...|-.+.+.|.+|+++.+.+
T Consensus         7 DVvVIG-~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIG-GGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            589999 59999999999999999999998754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.48  Score=30.94  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      -.++|+|| |..|...+..+.+.|.+|.++.+..
T Consensus         4 yDviIIG~-GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           4 YDYLVIGG-GSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            35889995 9999999999999999999998754

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=85.89  E-value=1.1  Score=29.39  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh----h-cCCCeEEEEccCCChHHHHHHhcCc
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH----F-KNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~-~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      ..+||=.| |||.+...+++++...+.+|+.++-+     ++.++..++    . ....+.+...|..+.+     ....
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S-----~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~  109 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS-----QPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNA  109 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSC-----HHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-----CCSE
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCC-----HHHHHHHHHHhHhhcccchhhhccchhhccc-----cccc
Confidence            45788899 77877777777766668899999887     544443222    1 2345677777776533     2356


Q ss_pred             CEEEEcCCCcc--hHHHHHHHHHHHHh-cCCccEEEe
Q 040431           78 DVVISTVGHTL--LADQVKIIAAIKEA-EGASRGTLR  111 (157)
Q Consensus        78 d~vv~~a~~~~--~~~~~~l~~~~~~~-~~~~~~v~~  111 (157)
                      |+++.+.....  ......+++-+.+. ...+.+++.
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence            76665544433  23344455554443 112456553

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.88  E-value=0.88  Score=29.73  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHh--cCcCEEEEcCCC
Q 040431           12 GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAI--KQVDVVISTVGH   86 (157)
Q Consensus        12 atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~--~~~d~vv~~a~~   86 (157)
                      |+|+...++.+.+ . +.+|++++++     ++.++..++   ....++.++.++..+.+.+.+-+  ..+|.|+.-.|.
T Consensus        33 G~Gghs~~il~~~-~-~~~vi~~D~d-----~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          33 GEGGHSRAILEHC-P-GCRIIGIDVD-----SEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGV  105 (192)
T ss_dssp             TTSHHHHHHHHHC-T-TCEEEEEESC-----HHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred             CCcHHHHHHHhcC-C-CCeEEEeech-----HHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeeccch
Confidence            3444444444443 2 4689999999     655543322   12457999999998877765554  478999888887


Q ss_pred             cc
Q 040431           87 TL   88 (157)
Q Consensus        87 ~~   88 (157)
                      +.
T Consensus       106 Ss  107 (192)
T d1m6ya2         106 ST  107 (192)
T ss_dssp             CH
T ss_pred             hH
Confidence            55

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.77  E-value=0.44  Score=31.06  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +..++|.|| |..|...+..+.+.|.+|.++.+..
T Consensus         3 ~~DviVIG~-GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           3 ETETLVVGA-GPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             ECSEEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHCCCEEEEEecCC
Confidence            457899995 9999999999999999999998764

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=85.73  E-value=1.2  Score=26.46  Aligned_cols=34  Identities=6%  Similarity=-0.051  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      +++|+|.--.-.+...+...|.+.|++|......
T Consensus         2 p~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~   35 (118)
T d2b4aa1           2 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSG   35 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCCeEEECCH
Confidence            5789999999999999999999999999876533

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.4  Score=33.38  Aligned_cols=74  Identities=19%  Similarity=0.234  Sum_probs=49.6

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh----hhcCCCeEEEEccCCChHHHHHHhcCcC
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD----HFKNLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      ..+|+=.| |||.||-.++..+  ...+|++++.+     +..++..+    ...-.++.+++.|+.++..    -.++|
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~--p~~~v~avDis-----~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~----~~~fD  177 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASER--PDCEIIAVDRM-----PDAVSLAQRNAQHLAIKNIHILQSDWFSALA----GQQFA  177 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHC--TTSEEEEECSS-----HHHHHHHHHHHHHHTCCSEEEECCSTTGGGT----TCCEE
T ss_pred             ccceeeeehhhhHHHHHHHhhC--Ccceeeeccch-----hHHHhHHHHHHHHhCcccceeeecccccccC----CCcee
Confidence            34576666 7888888877654  24689998877     44443322    2222469999999976421    13699


Q ss_pred             EEEEcCCCcc
Q 040431           79 VVISTVGHTL   88 (157)
Q Consensus        79 ~vv~~a~~~~   88 (157)
                      .||.|..+..
T Consensus       178 lIvsNPPYi~  187 (274)
T d2b3ta1         178 MIVSNPPYID  187 (274)
T ss_dssp             EEEECCCCBC
T ss_pred             EEEecchhhh
Confidence            9999988764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=85.36  E-value=0.54  Score=32.44  Aligned_cols=89  Identities=13%  Similarity=0.139  Sum_probs=53.8

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      ..+||=+| |+|..+..+++.+ ..+.+|+.++.+     +..++..++   ..+.++.++..|+.+.+.    -...|+
T Consensus        28 ~~~ILDiGcG~G~~~~~la~~~-~~~~~v~giD~s-----~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~----~~~fD~   97 (281)
T d2gh1a1          28 PVHIVDYGCGYGYLGLVLMPLL-PEGSKYTGIDSG-----ETLLAEARELFRLLPYDSEFLEGDATEIEL----NDKYDI   97 (281)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTS-CTTCEEEEEECC-----HHHHHHHHHHHHSSSSEEEEEESCTTTCCC----SSCEEE
T ss_pred             cCEEEEecCcCCHHHHHHHHhC-CCCCEEEEEecc-----hhHhhhhhcccccccccccccccccccccc----cCCceE
Confidence            46788888 5555544444332 346789998877     444433221   223468899999876431    135899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHh
Q 040431           80 VISTVGHTLLADQVKIIAAIKEA  102 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~  102 (157)
                      |+.+...........+++.+.+.
T Consensus        98 v~~~~~l~~~~d~~~~l~~~~~~  120 (281)
T d2gh1a1          98 AICHAFLLHMTTPETMLQKMIHS  120 (281)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHT
T ss_pred             EEEehhhhcCCCHHHHHHHHHHH
Confidence            99887766544445555555544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=85.09  E-value=1.7  Score=28.54  Aligned_cols=85  Identities=12%  Similarity=0.094  Sum_probs=54.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEEccCCChHHHHHHhcCcCEEEEc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQVDVVIST   83 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~vv~~   83 (157)
                      ..+||=.|. | .|.. ++.|.+.|++|++++-+     ++.++..+.....++.++.+|+.+...    -...|+|+..
T Consensus        21 ~~~VLDiGc-G-~G~~-~~~l~~~g~~v~giD~s-----~~~i~~a~~~~~~~~~~~~~~~~~~~~----~~~fD~I~~~   88 (225)
T d2p7ia1          21 PGNLLELGS-F-KGDF-TSRLQEHFNDITCVEAS-----EEAISHAQGRLKDGITYIHSRFEDAQL----PRRYDNIVLT   88 (225)
T ss_dssp             SSCEEEESC-T-TSHH-HHHHTTTCSCEEEEESC-----HHHHHHHHHHSCSCEEEEESCGGGCCC----SSCEEEEEEE
T ss_pred             CCcEEEEeC-C-CcHH-HHHHHHcCCeEEEEeCc-----HHHhhhhhccccccccccccccccccc----cccccccccc
Confidence            457888882 2 2433 46677789999999877     555555554445679999998865431    1368999876


Q ss_pred             CCCcchHHHHHHHHHHH
Q 040431           84 VGHTLLADQVKIIAAIK  100 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~  100 (157)
                      ...-.+.....++..+.
T Consensus        89 ~vleh~~d~~~~l~~i~  105 (225)
T d2p7ia1          89 HVLEHIDDPVALLKRIN  105 (225)
T ss_dssp             SCGGGCSSHHHHHHHHH
T ss_pred             ceeEecCCHHHHHHHHH
Confidence            65555444555555544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.03  E-value=3  Score=26.60  Aligned_cols=87  Identities=17%  Similarity=0.141  Sum_probs=52.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh----hcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH----FKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      ..+||=.|. | .|. .+..|++.|++|++++.+     +..++..+.    ..-.++.+...|+.+...    -...|.
T Consensus        31 ~grvLDiGc-G-~G~-~~~~la~~g~~v~gvD~s-----~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~   98 (198)
T d2i6ga1          31 PGRTLDLGC-G-NGR-NSLYLAANGYDVTAWDKN-----PASMANLERIKAAEGLDNLQTDLVDLNTLTF----DGEYDF   98 (198)
T ss_dssp             SCEEEEETC-T-TSH-HHHHHHHTTCEEEEEESC-----HHHHHHHHHHHHHTTCTTEEEEECCTTTCCC----CCCEEE
T ss_pred             CCcEEEECC-C-CCH-HHHHHHHHhhhhccccCc-----HHHHHHHHHHhhhccccchhhhheecccccc----cccccE
Confidence            457888883 3 455 356777889999999887     444443221    112457888888865321    135799


Q ss_pred             EEEcCCCcch--HHHHHHHHHHHHh
Q 040431           80 VISTVGHTLL--ADQVKIIAAIKEA  102 (157)
Q Consensus        80 vv~~a~~~~~--~~~~~l~~~~~~~  102 (157)
                      |+.+.....+  .....++..+.+.
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~~~~~  123 (198)
T d2i6ga1          99 ILSTVVMMFLEAQTIPGLIANMQRC  123 (198)
T ss_dssp             EEEESCGGGSCTTHHHHHHHHHHHT
T ss_pred             EEEeeeeecCCHHHHHHHHHHHHHH
Confidence            9877766542  2234455555443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.92  E-value=3.3  Score=26.41  Aligned_cols=85  Identities=21%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh------hhcCCCeEEEEccCCChHHHHHHhcC
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD------HFKNLGVNLVIGDVLNHESLVKAIKQ   76 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~------~~~~~~v~~~~~D~~~~~~~~~~~~~   76 (157)
                      .++|+=.| |+|.++.    .|++.+.+|++++.+     +...+..+      .....+++++.+|..+...    -..
T Consensus        53 ~~~VLDiGcG~G~~~~----~la~~~~~v~~iD~s-----~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~----~~~  119 (194)
T d1dusa_          53 DDDILDLGCGYGVIGI----ALADEVKSTTMADIN-----RRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK----DRK  119 (194)
T ss_dssp             TCEEEEETCTTSHHHH----HHGGGSSEEEEEESC-----HHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT----TSC
T ss_pred             CCeEEEEeecCChhHH----HHHhhccccceeeec-----cccchhHHHHHHHhCCccceEEEEEcchhhhhc----cCC
Confidence            45788777 5565544    444567899999877     43333222      1223568999999865321    136


Q ss_pred             cCEEEEcCCCcc-hHHHHHHHHHHHH
Q 040431           77 VDVVISTVGHTL-LADQVKIIAAIKE  101 (157)
Q Consensus        77 ~d~vv~~a~~~~-~~~~~~l~~~~~~  101 (157)
                      .|.|+.+..... ......+++.+.+
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~l~~~~~  145 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRIIEEGKE  145 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEcccEEecchhhhhHHHHHHH
Confidence            899998876544 2223445555443

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.77  E-value=2.1  Score=25.64  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      .++|+|.|| |..+-.-+..|.+...+|+++.|.+..
T Consensus        30 gk~V~VvGg-G~sA~~~A~~L~~~a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGG-GNSGVEAAIDLAGIVEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CceEEEEeC-CHHHHHHHHhhhccCCceEEEeccccc
Confidence            578999996 666777788888888899999987543

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=3.3  Score=26.28  Aligned_cols=99  Identities=18%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCCCCCchhh-Hhhhhc-----CCCeE------------EEEccCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTISGPSKSQ-LLDHFK-----NLGVN------------LVIGDVL   65 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~-~~~~~~-----~~~v~------------~~~~D~~   65 (157)
                      ++|.|-| =|.||+.+.+.+.++. .+|+++. ++.+  ++.+. +++...     +..+.            +....-.
T Consensus         2 ikigING-FGRIGR~v~R~~~~~~~i~ivaIN-d~~~--~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~   77 (166)
T d1gado1           2 IKVGING-FGRIGRIVFRAAQKRSDIEIVAIN-DLLD--ADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER   77 (166)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEE-CSSC--HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             eEEEEEC-CcHHHHHHHHHHhhCCCeEEEEEe-CCCC--HHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCC
Confidence            5788888 7999999999999885 5676665 3222  33332 222110     11121            1111123


Q ss_pred             ChHHHHHHhcCcCEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           66 NHESLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        66 ~~~~~~~~~~~~d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      +++++.=--.++|+|+-+.|.+.   +..-+..-.+.| .++++..
T Consensus        78 ~p~~i~W~~~gvDiViEcTG~f~---t~~~~~~hl~~g-akkViiS  119 (166)
T d1gado1          78 DPANLKWDEVGVDVVAEATGLFL---TDETARKHITAG-AKKVVMT  119 (166)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCC---SHHHHTHHHHTT-CSEEEES
T ss_pred             ChHHCCccccCCCEEEEcccccc---CHHHHHHHhcCC-CceEEee
Confidence            45543211227999999999986   333444445666 7777653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=84.21  E-value=0.86  Score=32.90  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAG-HPTFVLVRESTI   40 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~~   40 (157)
                      -.++|.|| |.-|..+|.+|.+.| ++|.++-+....
T Consensus        25 yD~IIVGs-G~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          25 YDYIIAGG-GLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eeEEEECc-CHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            36899995 999999999999998 799999998643

>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein PA1204
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.97  E-value=2.9  Score=26.41  Aligned_cols=33  Identities=12%  Similarity=0.049  Sum_probs=23.0

Q ss_pred             HHHHHHhcCcCEEEEcCCCcc---hHHHHHHHHHHH
Q 040431           68 ESLVKAIKQVDVVISTVGHTL---LADQVKIIAAIK  100 (157)
Q Consensus        68 ~~~~~~~~~~d~vv~~a~~~~---~~~~~~l~~~~~  100 (157)
                      ..+.+.+..+|.+|.......   .-..+++++.+.
T Consensus        58 ~~~~~~i~~aD~iii~sP~y~~s~~~~lKn~iD~l~   93 (174)
T d1rtta_          58 ERFREQIRAADALLFATPEYNYSMAGVLKNAIDWAS   93 (174)
T ss_dssp             HHHHHHHHHCSEEEEECCEETTEECHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCeEEEEccchhccccHHHHHHHHHHh
Confidence            445555668999987666654   455788898874

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.88  E-value=0.64  Score=30.21  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      +-.++|+|| |--|...+..+.+.|.+|.++.+..
T Consensus         3 kYDviIIGg-GpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           3 KFDVIVIGA-GPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             cCCEEEECc-CHHHHHHHHHHHHCCCeEEEEeccc
Confidence            457999995 9999999999999999999998754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.77  E-value=0.89  Score=31.18  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCCcchHH-----HHHHHHhCCCcEEEEecCCCC
Q 040431            4 KSKILFIGGTGYIGKF-----TVEASVKAGHPTFVLVRESTI   40 (157)
Q Consensus         4 ~~~ilitGatG~iG~~-----l~~~l~~~g~~v~~~~r~~~~   40 (157)
                      |++|.|.| =|++|+-     |+..|.+.|++|.+++-++..
T Consensus         2 Mr~Iaisg-KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           2 MRQCAIYG-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             ccEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            77899987 6888874     688889999999999988643

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.59  E-value=3.8  Score=26.85  Aligned_cols=93  Identities=17%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             EEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH---hhhhcCCCeEEEEccCCChHHHHHHhc-CcCEEEEc
Q 040431            8 LFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL---LDHFKNLGVNLVIGDVLNHESLVKAIK-QVDVVIST   83 (157)
Q Consensus         8 litGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~v~~~~~D~~~~~~~~~~~~-~~d~vv~~   83 (157)
                      +|.+.+---...+++.|.+.|.+++=++-+.    +...+.   +.....+++.+=.+-+.+.++++++++ +++.++.-
T Consensus        14 vlr~~~~~~a~~~~~al~~~Gi~~iEitlr~----p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP   89 (202)
T d1wa3a1          14 VLRANSVEEAKEKALAVFEGGVHLIEITFTV----PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSP   89 (202)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCEEEEETTS----TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred             EEECCCHHHHHHHHHHHHHcCCCEEEEecCC----ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeCC
Confidence            4666677778899999999998876444432    333333   332233567666789999999999987 89988722


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           84 VGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        84 a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                       +.     ...+++.+.+.+ ...+-=+
T Consensus        90 -~~-----~~~v~~~~~~~~-i~~iPGv  110 (202)
T d1wa3a1          90 -HL-----DEEISQFCKEKG-VFYMPGV  110 (202)
T ss_dssp             -SC-----CHHHHHHHHHHT-CEEECEE
T ss_pred             -CC-----cHHHHHHHHhcC-CceeCCc
Confidence             22     357888888887 4443333

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=83.47  E-value=0.47  Score=33.29  Aligned_cols=33  Identities=12%  Similarity=0.032  Sum_probs=23.4

Q ss_pred             CeEEE-EcCC-Ccc--hHHHHHHHHhCCCcEEEEecC
Q 040431            5 SKILF-IGGT-GYI--GKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         5 ~~ili-tGat-G~i--G~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |||++ +||| |.+  --+|++.|.++||+|++++..
T Consensus         1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~   37 (391)
T d1pn3a_           1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPP   37 (391)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred             CEEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEECh
Confidence            46666 5555 433  235899999999999998743

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=83.24  E-value=1.2  Score=29.48  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=51.7

Q ss_pred             CCCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHh----hhhcCCCeEEEEccCCChHHHHHHhcCc
Q 040431            3 SKSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLL----DHFKNLGVNLVIGDVLNHESLVKAIKQV   77 (157)
Q Consensus         3 ~~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~v~~~~~D~~~~~~~~~~~~~~   77 (157)
                      ..++||=.| |||.+    +..|.+.+.+|+.++-+     +..++..    ......++.++++|..+.+ +.  -..+
T Consensus        16 ~~~rILDiGcGtG~~----~~~la~~~~~v~gvD~S-----~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~f   83 (234)
T d1xxla_          16 AEHRVLDIGAGAGHT----ALAFSPYVQECIGVDAT-----KEMVEVASSFAQEKGVENVRFQQGTAESLP-FP--DDSF   83 (234)
T ss_dssp             TTCEEEEESCTTSHH----HHHHGGGSSEEEEEESC-----HHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SC--TTCE
T ss_pred             CCCEEEEeCCcCcHH----HHHHHHhCCeEEEEeCC-----hhhhhhhhhhhccccccccccccccccccc-cc--cccc
Confidence            356899899 44543    44555668899999877     4433322    2222357999999986532 10  1257


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHH
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~  101 (157)
                      |+|+.+-....+.....+++.+..
T Consensus        84 D~v~~~~~l~~~~d~~~~l~~~~r  107 (234)
T d1xxla_          84 DIITCRYAAHHFSDVRKAVREVAR  107 (234)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHH
T ss_pred             ceeeeeceeecccCHHHHHHHHHH
Confidence            988877666543334444554443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=83.14  E-value=2  Score=28.61  Aligned_cols=88  Identities=22%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhh--cCCCeEEEEccCCC--hHHHHHHhcCcC
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHF--KNLGVNLVIGDVLN--HESLVKAIKQVD   78 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~--~~~~~~~~~~~d   78 (157)
                      ..+||-.| |||+.-    ..|.+.+.+|+.+.++     ++..+..++.  ...++.++.+|..+  ++     -...|
T Consensus        71 g~~VLdIG~GsGy~t----a~La~l~~~V~aiE~~-----~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~-----~~pfD  136 (224)
T d1vbfa_          71 GQKVLEIGTGIGYYT----ALIAEIVDKVVSVEIN-----EKMYNYASKLLSYYNNIKLILGDGTLGYEE-----EKPYD  136 (224)
T ss_dssp             TCEEEEECCTTSHHH----HHHHHHSSEEEEEESC-----HHHHHHHHHHHTTCSSEEEEESCGGGCCGG-----GCCEE
T ss_pred             cceEEEecCCCCHHH----HHHHHHhccccccccc-----HHHHHHHHHHHhcccccccccCchhhcchh-----hhhHH
Confidence            46899999 555543    3344446789999877     4443332221  23589999999754  22     13579


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHHhcCCccEEE
Q 040431           79 VVISTVGHTLLADQVKIIAAIKEAEGASRGTL  110 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~  110 (157)
                      .|+..++...+  ...+++.++..   +++|.
T Consensus       137 ~Iiv~~a~~~i--p~~l~~qLk~G---GrLV~  163 (224)
T d1vbfa_         137 RVVVWATAPTL--LCKPYEQLKEG---GIMIL  163 (224)
T ss_dssp             EEEESSBBSSC--CHHHHHTEEEE---EEEEE
T ss_pred             HHHhhcchhhh--hHHHHHhcCCC---CEEEE
Confidence            99988877542  23455554433   35554

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=82.89  E-value=0.46  Score=33.43  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .|+|.| +|.-|...+..+.++|.+|+++++.+
T Consensus         9 DVlVVG-~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIG-AGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEEC-CSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            589999 59999999999999999999998764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.85  E-value=0.73  Score=30.80  Aligned_cols=79  Identities=18%  Similarity=0.145  Sum_probs=51.6

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhh-cCCCeEEEEccCCCh-HHHHHHh--
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHF-KNLGVNLVIGDVLNH-ESLVKAI--   74 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~-~~~~v~~~~~D~~~~-~~~~~~~--   74 (157)
                      .++|+=+| ++|+...++++.+-+ +-+|+.+..+     ++..+.    ++.. ....++++.+|..+. +++....  
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~-~g~i~tie~~-----~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~  133 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPA-DGRVVTCEVD-----AQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA  133 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESC-----SHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEechhhHHHHHHHHhCCC-CceEEEEeec-----hhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhccc
Confidence            57899999 778888888888744 4589888887     444332    2222 235688999887542 2222211  


Q ss_pred             cCcCEEEEcCCCcc
Q 040431           75 KQVDVVISTVGHTL   88 (157)
Q Consensus        75 ~~~d~vv~~a~~~~   88 (157)
                      ..+|.|+.-+....
T Consensus       134 ~~fD~ifiD~dk~~  147 (219)
T d2avda1         134 GTFDVAVVDADKEN  147 (219)
T ss_dssp             TCEEEEEECSCSTT
T ss_pred             CCccEEEEeCCHHH
Confidence            25888988877765

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.75  E-value=0.72  Score=30.15  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      .++|+|.| +|..|--+|..+.+.+.+++.+.|.+.
T Consensus        32 gK~V~VvG-~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          32 GQRVGVIG-TGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEEC-CCccHHHHHHHHHhhhccccccccccc
Confidence            57899999 699999999999999999888888753

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.39  E-value=0.48  Score=30.10  Aligned_cols=78  Identities=19%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcC-CCeEEEEccCCChHHHHHHhcCcCEEEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKN-LGVNLVIGDVLNHESLVKAIKQVDVVIS   82 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~~~~d~vv~   82 (157)
                      ..+|++.|-.+.+...++..|...|.+++++.=.....+++..+.+.+... ....+     .-.+++.++++++|+|+-
T Consensus         4 gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~ea~~~adviy~   78 (163)
T d1pvva2           4 GVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSF-----ELLHDPVKAVKDADVIYT   78 (163)
T ss_dssp             TCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE-----EEESCHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceE-----EEecCHHHHhhhccEEee
Confidence            679999999889999999999999999887654322221111222221110 01111     112235567788998886


Q ss_pred             cCCC
Q 040431           83 TVGH   86 (157)
Q Consensus        83 ~a~~   86 (157)
                      --..
T Consensus        79 ~~~~   82 (163)
T d1pvva2          79 DVWA   82 (163)
T ss_dssp             CCCC
T ss_pred             ccee
Confidence            4433

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.30  E-value=0.55  Score=32.71  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhC--CCcEEEEecCCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKA--GHPTFVLVREST   39 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~--g~~v~~~~r~~~   39 (157)
                      .+|+|.|| |..|...+..|.++  |++|.++.+.+.
T Consensus        51 ~~~~~~g~-g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGA-GSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECC-SHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            46999995 99999999999865  899999998753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.97  E-value=1.2  Score=30.12  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcchHHH-----HHHHHhCCCcEEEEecCCC
Q 040431            5 SKILFIGGTGYIGKFT-----VEASVKAGHPTFVLVREST   39 (157)
Q Consensus         5 ~~ilitGatG~iG~~l-----~~~l~~~g~~v~~~~r~~~   39 (157)
                      .+|+|+.|=|++|+-.     +..|.+.|++|.+++-++.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5788888899999865     7888999999999998864

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=81.95  E-value=0.81  Score=31.95  Aligned_cols=32  Identities=13%  Similarity=0.057  Sum_probs=23.4

Q ss_pred             CeEEEEc-CC-Ccc--hHHHHHHHHhCCCcEEEEec
Q 040431            5 SKILFIG-GT-GYI--GKFTVEASVKAGHPTFVLVR   36 (157)
Q Consensus         5 ~~ilitG-at-G~i--G~~l~~~l~~~g~~v~~~~r   36 (157)
                      |||++++ || |.+  ..+|+++|.+.||+|++++.
T Consensus         1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~   36 (401)
T d1iira_           1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAP   36 (401)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            4677774 44 333  34689999999999999874

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.93  E-value=2.4  Score=25.09  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecC
Q 040431            1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRE   37 (157)
Q Consensus         1 M~~~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~   37 (157)
                      |+ +.+|||.--.-.+...+.+.|.+.|++|......
T Consensus         1 M~-k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~   36 (123)
T d1krwa_           1 MQ-RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENG   36 (123)
T ss_dssp             CC-CCEEEEESSSHHHHHHHHHHHHHTTCEEEEESSS
T ss_pred             CC-CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCH
Confidence            65 5689999999999999999999999999876443

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=81.86  E-value=1  Score=29.57  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=28.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|+|| |-.|...+..+.+.|.+|.++.+.+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            5899995 9999999999999999999998764

>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein Ylr011wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.76  E-value=0.97  Score=29.10  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=21.2

Q ss_pred             HHHHHhcCcCEEEEcCCCcc---hHHHHHHHHHHHH
Q 040431           69 SLVKAIKQVDVVISTVGHTL---LADQVKIIAAIKE  101 (157)
Q Consensus        69 ~~~~~~~~~d~vv~~a~~~~---~~~~~~l~~~~~~  101 (157)
                      .+.+.+..+|.+|......+   .-..+++++.+..
T Consensus        77 ~~~~~i~~AD~iIi~tP~Y~~~~~~~lK~~iD~~~~  112 (185)
T d1t0ia_          77 SWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH  112 (185)
T ss_dssp             HHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST
T ss_pred             HHHHHHHhCCCeEEEEeeecCCCcHHHHHHHHHhhH
Confidence            34455668998887666554   3446777777644

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=81.61  E-value=0.92  Score=30.60  Aligned_cols=32  Identities=28%  Similarity=0.482  Sum_probs=28.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|+|| |..|...+..+.+.|.+|.++.+.+
T Consensus        44 DvvVIGg-G~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGG-GAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            5899985 9999999999999999999998764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=81.44  E-value=1.4  Score=28.72  Aligned_cols=97  Identities=10%  Similarity=0.116  Sum_probs=56.6

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhH----hhhhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQL----LDHFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++||=.|. | .|.. +..|++.|.+|++++-+     +..++.    .+.....++.++.+|..+.+ +.  -...|+
T Consensus        16 ~~rVLDiGc-G-~G~~-~~~l~~~~~~v~gvD~s-----~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~--~~~fD~   84 (231)
T d1vl5a_          16 NEEVLDVAT-G-GGHV-ANAFAPFVKKVVAFDLT-----EDILKVARAFIEGNGHQQVEYVQGDAEQMP-FT--DERFHI   84 (231)
T ss_dssp             CCEEEEETC-T-TCHH-HHHHGGGSSEEEEEESC-----HHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SC--TTCEEE
T ss_pred             cCEEEEecc-c-CcHH-HHHHHHhCCEEEEEECC-----HHHHhhhhhccccccccccccccccccccc-cc--cccccc
Confidence            468888883 3 3433 45667889999999877     433332    22333467999999987643 10  125899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHh-cCCccEEEe
Q 040431           80 VISTVGHTLLADQVKIIAAIKEA-EGASRGTLR  111 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~~-~~~~~~v~~  111 (157)
                      |+.......+.....+++.+... ...+++++.
T Consensus        85 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          85 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            98887776543444444443332 101456553

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.41  E-value=2.5  Score=29.63  Aligned_cols=71  Identities=17%  Similarity=0.202  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhC-C-CcEEEEecCCCCCCCchhhHhh-hhcCCCeEEEEccCCChHHHHHHhcCcCEE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKA-G-HPTFVLVRESTISGPSKSQLLD-HFKNLGVNLVIGDVLNHESLVKAIKQVDVV   80 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~-g-~~v~~~~r~~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~~~d~v   80 (157)
                      .+++.|+| +|..+.+-++.|... . .+|.+.+|+     +++.+.+. +.....+....   +.    .+.+.++|+|
T Consensus       125 ~~~l~iiG-aG~QA~~~~~al~~~~~i~~i~v~~r~-----~e~~~~~~~~~~~~~~~~~~---~~----~~a~~~aDiV  191 (320)
T d1omoa_         125 SSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVR-----EKAAKKFVSYCEDRGISASV---QP----AEEASRCDVL  191 (320)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSS-----HHHHHHHHHHHHHTTCCEEE---CC----HHHHTSSSEE
T ss_pred             ccEEEEec-CcccHHHHHHHHHHHhhhhhcccccCC-----HHHHHHHHHHHHhcCCcccc---ch----hhhhccccEE
Confidence            35788888 799999999998764 3 479999888     65655432 22222232221   12    2446789999


Q ss_pred             EEcCCCc
Q 040431           81 ISTVGHT   87 (157)
Q Consensus        81 v~~a~~~   87 (157)
                      +......
T Consensus       192 ~taT~s~  198 (320)
T d1omoa_         192 VTTTPSR  198 (320)
T ss_dssp             EECCCCS
T ss_pred             EEeccCc
Confidence            8766554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.35  E-value=0.96  Score=29.00  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=48.7

Q ss_pred             CeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh----hc-CCCeEEEEccCCChHHHHHHhcCcC
Q 040431            5 SKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH----FK-NLGVNLVIGDVLNHESLVKAIKQVD   78 (157)
Q Consensus         5 ~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~-~~~v~~~~~D~~~~~~~~~~~~~~d   78 (157)
                      .+|+=.| |+|.++.+    |+..+.+|+.++.+     ++.++..++    .. ..+++++.+|..+.   ..-...+|
T Consensus        35 ~~VLDiGcGsG~~s~~----lA~~~~~V~avD~~-----~~~l~~a~~n~~~~gl~~~v~~~~gda~~~---~~~~~~~D  102 (186)
T d1l3ia_          35 DVAVDVGCGTGGVTLE----LAGRVRRVYAIDRN-----PEAISTTEMNLQRHGLGDNVTLMEGDAPEA---LCKIPDID  102 (186)
T ss_dssp             CEEEEESCTTSHHHHH----HHTTSSEEEEEESC-----HHHHHHHHHHHHHTTCCTTEEEEESCHHHH---HTTSCCEE
T ss_pred             CEEEEEECCeEccccc----ccccceEEEEecCC-----HHHHHHHHHHHHHcCCCcceEEEECchhhc---ccccCCcC
Confidence            4566666 55655544    44567799999988     555543322    21 25789999976332   22234789


Q ss_pred             EEEEcCCCcchHHHHHHHHHHHH
Q 040431           79 VVISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        79 ~vv~~a~~~~~~~~~~l~~~~~~  101 (157)
                      .|+.+.+....   ..+++.+.+
T Consensus       103 ~v~~~~~~~~~---~~~~~~~~~  122 (186)
T d1l3ia_         103 IAVVGGSGGEL---QEILRIIKD  122 (186)
T ss_dssp             EEEESCCTTCH---HHHHHHHHH
T ss_pred             EEEEeCccccc---hHHHHHHHH
Confidence            99887766542   344444444

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.32  E-value=4.9  Score=25.74  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=20.5

Q ss_pred             EEEEcCCCcchHHHHHHHHhCCCcEE-EEe
Q 040431            7 ILFIGGTGYIGKFTVEASVKAGHPTF-VLV   35 (157)
Q Consensus         7 ilitGatG~iG~~l~~~l~~~g~~v~-~~~   35 (157)
                      ++||||++-==+..|++|+..+.+++ +-+
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT   31 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEEc
Confidence            79999876544578899987766654 444

>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.18  E-value=2  Score=25.62  Aligned_cols=95  Identities=19%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhhhcCCCeEEEE----ccCCChHHHHHHhc--Cc
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI----GDVLNHESLVKAIK--QV   77 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~----~D~~~~~~~~~~~~--~~   77 (157)
                      .++|||.- -|=+.--+++...+.|.+.+++....+.. .....    ..+. ...+-    -.+.|.+.+.++.+  ++
T Consensus         2 ~kkvLIAN-RGEiA~Ri~ra~~elgi~tvav~s~~D~~-s~~~~----~ad~-~~~ig~~~~~sYln~~~Ii~~A~~~~~   74 (114)
T d1ulza2           2 VNKVLVAN-RGEIAVRIIRACKELGIPTVAIYNEVEST-ARHVK----LADE-AYMIGTDPLDTYLNKQRIINLALEVGA   74 (114)
T ss_dssp             CSSEEECC-CHHHHHHHHHHHHHHTCCEEEEECGGGTT-CHHHH----HSSE-EEECCSSTTHHHHCHHHHHHHHHHTTC
T ss_pred             CceeeEec-CCHHHHHHHHHHHHhcCCeEEEecchhhc-Ccchh----hcce-eeecCCChhhhhhcHHHHHHHHHHhCC
Confidence            56888887 68899999999999998877765442221 11111    1111 11111    12346666666665  67


Q ss_pred             CEEEEcCCCcchHHHHHHHHHHHHhcCCccEEEe
Q 040431           78 DVVISTVGHTLLADQVKIIAAIKEAEGASRGTLR  111 (157)
Q Consensus        78 d~vv~~a~~~~~~~~~~l~~~~~~~~~~~~~v~~  111 (157)
                      |.|.  .|.........+.+++.+.|    ++|+
T Consensus        75 daih--PGyGFLSEna~Fa~~~~~~g----i~FI  102 (114)
T d1ulza2          75 DAIH--PGYGFLAENAEFAKMCEEAG----ITFI  102 (114)
T ss_dssp             CEEE--CCSSTTTTCHHHHHHHHHTT----CEES
T ss_pred             CeEe--cchhhhhhHHHHHHHHHHCC----CEEE
Confidence            8776  56655556667888888887    5565

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.16  E-value=0.98  Score=30.43  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCCCcEEEEecCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRES   38 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~   38 (157)
                      .++|.|| |-.|...+..+.+.|.+|.++.+..
T Consensus         3 DviVIG~-G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGG-GSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECC-CHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4789995 9999999999999999999999764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=80.92  E-value=2.4  Score=28.79  Aligned_cols=82  Identities=15%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhh---hhcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLD---HFKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      .++||=.| |||.+    +..+.+.|.+|+.++.+     +..++..+   +..+.++.++.+|+.+..    ....+|.
T Consensus       121 g~~VLDiGcGsG~l----~i~aa~~g~~V~gvDis-----~~av~~A~~na~~n~~~~~~~~~d~~~~~----~~~~fD~  187 (254)
T d2nxca1         121 GDKVLDLGTGSGVL----AIAAEKLGGKALGVDID-----PMVLPQAEANAKRNGVRPRFLEGSLEAAL----PFGPFDL  187 (254)
T ss_dssp             TCEEEEETCTTSHH----HHHHHHTTCEEEEEESC-----GGGHHHHHHHHHHTTCCCEEEESCHHHHG----GGCCEEE
T ss_pred             cCEEEEcccchhHH----HHHHHhcCCEEEEEECC-----hHHHHHHHHHHHHcCCceeEEeccccccc----cccccch
Confidence            46788888 44443    34556679999999988     55444332   223446677887764311    1236899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHH
Q 040431           80 VISTVGHTLLADQVKIIAAIKE  101 (157)
Q Consensus        80 vv~~a~~~~~~~~~~l~~~~~~  101 (157)
                      |+.|....   ....+++.+.+
T Consensus       188 V~ani~~~---~l~~l~~~~~~  206 (254)
T d2nxca1         188 LVANLYAE---LHAALAPRYRE  206 (254)
T ss_dssp             EEEECCHH---HHHHHHHHHHH
T ss_pred             hhhccccc---cHHHHHHHHHH
Confidence            98764432   23445544443

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.83  E-value=0.93  Score=29.80  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHhCCCcEEEEecCCC
Q 040431            5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVREST   39 (157)
Q Consensus         5 ~~ilitGatG~iG~~l~~~l~~~g~~v~~~~r~~~   39 (157)
                      -.++|+|| |-.|...+..+.+.|.+|.++.+.+.
T Consensus         4 YDviVIG~-GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           4 FDLIIIGG-GSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEEECC-SHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            36899995 99999999999999999999986643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.63  E-value=0.29  Score=30.67  Aligned_cols=27  Identities=33%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHhCCCcE
Q 040431            4 KSKILFIGGTGYIGKFTVEASVKAGHPT   31 (157)
Q Consensus         4 ~~~ilitGatG~iG~~l~~~l~~~g~~v   31 (157)
                      .++++|.|| |++|..++..+...|.++
T Consensus        29 gkrVvVIGg-G~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGC-GGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECC-HHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcC-chhHHHHHHHHHHcCCcc
Confidence            468999996 999999999999998653

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=80.36  E-value=6.1  Score=26.23  Aligned_cols=95  Identities=8%  Similarity=-0.007  Sum_probs=51.4

Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCCchh-hHhhhhcCCCeEE--EEccCCChHHHHHHhc--CcCEEEEcCCCc---
Q 040431           16 IGKFTVEASVKAGHPTFVLVRESTISGPSKS-QLLDHFKNLGVNL--VIGDVLNHESLVKAIK--QVDVVISTVGHT---   87 (157)
Q Consensus        16 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~~~v~~--~~~D~~~~~~~~~~~~--~~d~vv~~a~~~---   87 (157)
                      +-.++-+++.+.|+++.+..-+.++  .+.. +.++.+...+++-  +..+..+.+.....+.  ++=+|+......   
T Consensus        18 i~~~i~~~a~~~Gy~v~v~~~~~~~--~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~~~~~   95 (271)
T d1jyea_          18 IVAAILSRADQLGASVVVSMVERSG--VEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPI   95 (271)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSSS--HHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCTTSSS
T ss_pred             HHHHHHHHHHHcCCEEEEEECCCCC--HHHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHHhcCCCeeeeeccccccC
Confidence            4566778888889998776543222  2222 2334443444433  2333333333333333  222333322211   


Q ss_pred             ------chHHHHHHHHHHHHhcCCccEEEecc
Q 040431           88 ------LLADQVKIIAAIKEAEGASRGTLRTQ  113 (157)
Q Consensus        88 ------~~~~~~~l~~~~~~~~~~~~~v~~Ss  113 (157)
                            +....+.+++.+.+.| .+++.++++
T Consensus        96 ~~V~~D~~~~~~~~~~~L~~~G-~~~i~~i~~  126 (271)
T d1jyea_          96 NSIIFSHEDGTRLGVEHLVALG-HQQIALLAG  126 (271)
T ss_dssp             CEEEECHHHHHHHHHHHHHHHT-CCSEEEEEC
T ss_pred             Cccccchhhccccceeeeeccc-ccccccccc
Confidence                  1556777888888888 789999874

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=80.14  E-value=0.84  Score=32.79  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=28.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHhCC-CcEEEEecCCC
Q 040431            6 KILFIGGTGYIGKFTVEASVKAG-HPTFVLVREST   39 (157)
Q Consensus         6 ~ilitGatG~iG~~l~~~l~~~g-~~v~~~~r~~~   39 (157)
                      .++|+|| |.-|..+|.+|.+.+ ++|.++-+...
T Consensus        19 D~IIVGs-G~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          19 DYIIAGG-GLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            6899995 899999999999876 79999998853

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.06  E-value=0.5  Score=29.87  Aligned_cols=77  Identities=18%  Similarity=0.125  Sum_probs=46.4

Q ss_pred             CCeEEEEc-CCCcchHHHHHHHHhCCCcEEEEecCCCCCCCchhhHhhh---hcCCCeEEEEccCCChHHHHHHhcCcCE
Q 040431            4 KSKILFIG-GTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDH---FKNLGVNLVIGDVLNHESLVKAIKQVDV   79 (157)
Q Consensus         4 ~~~ilitG-atG~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~~~~~~~~~d~   79 (157)
                      ..+|++.| +.+.+-..++..+...|.++++.+=.....++...+...+   .....+       .-.++++++++++|+
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~d~~~ai~~aDv   75 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSV-------SFTSNLEEALAGADV   75 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEE-------EEESCHHHHHTTCSE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCce-------EEEecHHHhhhhhhh
Confidence            67999999 5468999999999999999887653221111111111111   111111       112346678899999


Q ss_pred             EEEcCCCc
Q 040431           80 VISTVGHT   87 (157)
Q Consensus        80 vv~~a~~~   87 (157)
                      |+-.....
T Consensus        76 iyt~~~q~   83 (161)
T d1vlva2          76 VYTDVWAS   83 (161)
T ss_dssp             EEECCCC-
T ss_pred             eeccceee
Confidence            99766654