Citrus Sinensis ID: 040594

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLPVDDIKASSTAAADDDNDDVYLFGEKTEEEKKAAEERSTAIKTSAKKEEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTILFFVPQPLLLLLNLFLESGVS
ccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHcccccccccEEEccccEEEEEEEEEEcEEEEEEEEcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccEEEEEcccEEEEEEEEEcHHHHHHHHHHHHcccc
ccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEcccccccHHHHHHHHHHccccccEEccEcccccccccccEcccccHHcccccEEEEEEEEEHccccEccccEEEEEEEEEEEcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHEcccccEEEEEEEccHHHHHHHHHHHHcccc
yqaskndltvysalskppsseyvnvsrWYNYIDALLRIsgvsaegsgvivegsapiatlpvddikasstaaadddnddvylfgeKTEEEKKAAEERSTAIKTSAKKEEFGKSLVlldikpwddetdiQKLDEAVRgikmegqcrstevnagqqrpvpfqrksgEFLRRSGEVLVKFRcisgaklvpvgyGIKKLQIMLTIVDDLVSVDNLIEehlmaepineyvqsCDIVAFNKICIIQEslmtdagevsggsfwlaghckvttilffvpQPLLLLLNLFLESGVS
yqaskndltvysalskppsseyvNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLPVDDIKASstaaadddnddVYLFGEKteeekkaaeerstaiktsakkeefgkslvlldikpwddetDIQKLDEAVRGIKmegqcrstevnagqqrpvpfqrksgeflRRSGEVLvkfrcisgaklvpVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTILFFVPQPLLLLLNLFLESGVS
YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLPVddikasstaaadddnddVYLFGekteeekkaaeeRSTAIKTSAKKEEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTIlffvpqplllllnlflESGVS
********************EYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLPVD************************************************KSLVLLDIKPWDDETDIQKLDEAVR*****************************FLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTILFFVPQPLLLLLNLFL*****
YQASKNDLTVYSALSKPPSSEYVNVSRWYNYID**********************************************YLF*******************************VLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTILFFVPQPLLLLLNLFLESG**
YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLPVDDIKASSTAAADDDNDDVYLFGEKT**************KTSAKKEEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTILFFVPQPLLLLLNLFLESGVS
YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRIS****************************************YLFGEKTEEEKKAAEERSTAIKTSAKKEEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTILFFVPQPLLLLLNLFLES***
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YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLPVDDIKASSTAAADDDNDDVYLFGEKTEEEKKAAEERSTAIKTSAKKEEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKICIIQESLMTDAGEVSGGSFWLAGHCKVTTILFFVPQPLLLLLNLFLESGVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
P93447226 Elongation factor 1-delta N/A no 0.685 0.867 0.635 3e-69
Q9SI20231 Elongation factor 1-delta yes no 0.692 0.857 0.620 2e-62
P48006231 Elongation factor 1-delta no no 0.692 0.857 0.604 5e-59
Q40680229 Elongation factor 1-delta yes no 0.695 0.868 0.563 2e-51
Q40682226 Elongation factor 1-delta no no 0.688 0.871 0.561 3e-51
O81918231 Elongation factor 1-delta N/A no 0.692 0.857 0.581 4e-50
P29545224 Elongation factor 1-beta no no 0.671 0.857 0.465 1e-39
Q84WM9228 Elongation factor 1-beta no no 0.692 0.868 0.444 2e-39
Q9SCX3224 Elongation factor 1-beta no no 0.678 0.866 0.482 8e-33
P29546216 Elongation factor 1-beta N/A no 0.643 0.851 0.383 3e-30
>sp|P93447|EF1D_PIMBR Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3 Back     alignment and function desciption
 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/236 (63%), Positives = 176/236 (74%), Gaps = 40/236 (16%)

Query: 1   YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLP 60
           YQASK+DL V++AL+KPPSS+YVNVSRWYN+++ALLRISGVSAEG GV VEGS+ +AT P
Sbjct: 30  YQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSS-VATPP 88

Query: 61  VDDIKASSTAAADDDNDDVYLFGEKTEEEKKAAEERSTAIKTSAKKEEFGKSLVLLDIKP 120
           V D KAS  AA DDD+DDV LFGE+TEEEKKA+EER+ A+K S KK+E GKS VLLD+KP
Sbjct: 89  VADTKAS--AAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKP 146

Query: 121 WDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCIS 180
           WDDETD+ KL+EAVR IKM+G                                     + 
Sbjct: 147 WDDETDMTKLEEAVRSIKMDG------------------------------------LLW 170

Query: 181 GA-KLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 235
           GA KLV VGYGIKKLQIMLTIVDDLVSVD+L+E++L AEP NEY+QSCDIVAFNKI
Sbjct: 171 GASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226
EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.
Pimpinella brachycarpa (taxid: 45043)
>sp|Q9SI20|EF1D2_ARATH Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1 Back     alignment and function description
>sp|P48006|EF1D1_ARATH Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2 Back     alignment and function description
>sp|Q40680|EF1D1_ORYSJ Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3 Back     alignment and function description
>sp|Q40682|EF1D2_ORYSJ Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3 Back     alignment and function description
>sp|O81918|EF1D_BETVU Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3 Back     alignment and function description
>sp|P29545|EF1B_ORYSJ Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3 Back     alignment and function description
>sp|Q84WM9|EF1B1_ARATH Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2 Back     alignment and function description
>sp|Q9SCX3|EF1B2_ARATH Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1 Back     alignment and function description
>sp|P29546|EF1B_WHEAT Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
6015064226 RecName: Full=Elongation factor 1-delta; 0.685 0.867 0.635 2e-67
21593028231 putative elongation factor beta-1 [Arabi 0.692 0.857 0.625 5e-61
15224107231 Elongation factor 1-delta 2 [Arabidopsis 0.692 0.857 0.620 1e-60
378464888231 translation elongation factor [Ammopipta 0.688 0.852 0.637 3e-60
297734404245 unnamed protein product [Vitis vinifera] 0.706 0.824 0.628 2e-59
78191406232 ripening regulated protein DDTFR10-like 0.695 0.857 0.635 2e-59
297845958259 elongation factor 1-beta [Arabidopsis ly 0.713 0.787 0.601 3e-59
297832466252 hypothetical protein ARALYDRAFT_319762 [ 0.727 0.825 0.593 5e-59
225456295230 PREDICTED: elongation factor 1-delta-lik 0.692 0.860 0.634 8e-59
25299531242 probable elongation factor 1-beta [impor 0.716 0.847 0.595 1e-58
>gi|6015064|sp|P93447.3|EF1D_PIMBR RecName: Full=Elongation factor 1-delta; Short=EF-1-delta; AltName: Full=Elongation factor 1B-beta; AltName: Full=eEF-1B beta gi|1841870|gb|AAB68395.1| elongation factor 1-beta [Pimpinella brachycarpa] Back     alignment and taxonomy information
 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/236 (63%), Positives = 176/236 (74%), Gaps = 40/236 (16%)

Query: 1   YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLP 60
           YQASK+DL V++AL+KPPSS+YVNVSRWYN+++ALLRISGVSAEG GV VEGS+ +AT P
Sbjct: 30  YQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSS-VATPP 88

Query: 61  VDDIKASSTAAADDDNDDVYLFGEKTEEEKKAAEERSTAIKTSAKKEEFGKSLVLLDIKP 120
           V D KAS  AA DDD+DDV LFGE+TEEEKKA+EER+ A+K S KK+E GKS VLLD+KP
Sbjct: 89  VADTKAS--AAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKP 146

Query: 121 WDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCIS 180
           WDDETD+ KL+EAVR IKM+G                                     + 
Sbjct: 147 WDDETDMTKLEEAVRSIKMDG------------------------------------LLW 170

Query: 181 GA-KLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI 235
           GA KLV VGYGIKKLQIMLTIVDDLVSVD+L+E++L AEP NEY+QSCDIVAFNKI
Sbjct: 171 GASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226

Source: Pimpinella brachycarpa

Species: Pimpinella brachycarpa

Genus: Pimpinella

Family: Apiaceae

Order: Apiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21593028|gb|AAM64977.1| putative elongation factor beta-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15224107|ref|NP_179402.1| Elongation factor 1-delta 2 [Arabidopsis thaliana] gi|13124232|sp|Q9SI20.1|EF1D2_ARATH RecName: Full=Elongation factor 1-delta 2; Short=EF-1-delta 2; AltName: Full=Elongation factor 1B-beta 2; AltName: Full=eEF-1B beta 2 gi|4874292|gb|AAD31355.1| putative elongation factor beta-1 [Arabidopsis thaliana] gi|17473804|gb|AAL38335.1| putative elongation factor 1-beta [Arabidopsis thaliana] gi|20148479|gb|AAM10130.1| putative elongation factor 1-beta [Arabidopsis thaliana] gi|20197598|gb|AAM15146.1| putative elongation factor beta-1 [Arabidopsis thaliana] gi|330251633|gb|AEC06727.1| Elongation factor 1-delta 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|378464888|gb|AFC01201.1| translation elongation factor [Ammopiptanthus mongolicus] Back     alignment and taxonomy information
>gi|297734404|emb|CBI15651.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|78191406|gb|ABB29924.1| ripening regulated protein DDTFR10-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|297845958|ref|XP_002890860.1| elongation factor 1-beta [Arabidopsis lyrata subsp. lyrata] gi|297336702|gb|EFH67119.1| elongation factor 1-beta [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297832466|ref|XP_002884115.1| hypothetical protein ARALYDRAFT_319762 [Arabidopsis lyrata subsp. lyrata] gi|297329955|gb|EFH60374.1| hypothetical protein ARALYDRAFT_319762 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225456295|ref|XP_002283673.1| PREDICTED: elongation factor 1-delta-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|25299531|pir||E86426 probable elongation factor 1-beta [imported] - Arabidopsis thaliana gi|12320854|gb|AAG50564.1|AC073506_6 elongation factor 1-beta, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2009807260 eEF-1Bb1 "eukaryotic elongatio 0.493 0.542 0.569 4.2e-61
TAIR|locus:2053144231 AT2G18110 [Arabidopsis thalian 0.493 0.610 0.576 6.1e-60
TAIR|locus:2180806224 AT5G19510 [Arabidopsis thalian 0.188 0.241 0.814 6.5e-39
TAIR|locus:2177038228 AT5G12110 [Arabidopsis thalian 0.188 0.236 0.833 2.4e-37
WB|WBGene00018846213 eef-1B.1 [Caenorhabditis elega 0.181 0.244 0.625 1.3e-28
FB|FBgn0028737222 Ef1beta "Elongation factor 1 b 0.465 0.599 0.319 2.8e-27
ZFIN|ZDB-GENE-030131-7310225 eef1b2 "eukaryotic translation 0.479 0.608 0.308 1e-25
UNIPROTKB|Q5E983225 EEF1B "Elongation factor 1-bet 0.178 0.226 0.592 2.1e-24
UNIPROTKB|F1NYA9224 EEF1B2 "Uncharacterized protei 0.178 0.227 0.574 3.7e-24
RGD|1311415225 Eef1b2 "eukaryotic translation 0.178 0.226 0.574 8.3e-24
TAIR|locus:2009807 eEF-1Bb1 "eukaryotic elongation factor 1B beta 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 400 (145.9 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 82/144 (56%), Positives = 100/144 (69%)

Query:     1 YQASKNDLTVYSALSKPPSSEYVNVSRWYNYIDALLRISGVSAEGSGVIVEGSAPIATLP 60
             YQASK+D+TV++AL+KPP+S+YVN SRWYN+IDALLRISGVSAEGSGVIVEGSAPI    
Sbjct:    29 YQASKDDITVFAALAKPPTSQYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEA 88

Query:    61 VXX---XXXXXXXXXXXXXXXVYLFGXXXXXXXXXXXXRSTAIKTSAKKEEFGKSLVLLD 117
             V                    V LFG            R+ ++K S KK+E GKS VL+D
Sbjct:    89 VATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLID 148

Query:   118 IKPWDDETDIQKLDEAVRGIKMEG 141
             IKPWDDETD++KL+EAV+ I+MEG
Sbjct:   149 IKPWDDETDMKKLEEAVKSIQMEG 172
GO:0003746 "translation elongation factor activity" evidence=IEA;ISS
GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006414 "translational elongation" evidence=IEA;ISS
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0009808 "lignin metabolic process" evidence=IMP
GO:0071668 "plant-type cell wall assembly" evidence=IMP
GO:2001006 "regulation of cellulose biosynthetic process" evidence=IMP
TAIR|locus:2053144 AT2G18110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180806 AT5G19510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177038 AT5G12110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00018846 eef-1B.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0028737 Ef1beta "Elongation factor 1 beta" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7310 eef1b2 "eukaryotic translation elongation factor 1 beta 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E983 EEF1B "Elongation factor 1-beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYA9 EEF1B2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1311415 Eef1b2 "eukaryotic translation elongation factor 1 beta 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40680EF1D1_ORYSJNo assigned EC number0.56350.69580.8689yesno
Q9SI20EF1D2_ARATHNo assigned EC number0.62080.69230.8571yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
cd0029288 cd00292, EF1B, Elongation factor 1 beta (EF1B) gua 3e-24
pfam0073687 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchan 9e-21
smart0088888 smart00888, EF1_GNE, EF-1 guanine nucleotide excha 4e-19
COG209288 COG2092, EFB1, Translation elongation factor EF-1b 3e-07
cd1030882 cd10308, GST_C_eEF1b_like, Glutathione S-transfera 7e-07
cd1031073 cd10310, GST_C_CysRS_N, Glutathione S-transferase 2e-04
cd1028982 cd10289, GST_C_AaRS_like, Glutathione S-transferas 0.004
>gnl|CDD|238181 cd00292, EF1B, Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain Back     alignment and domain information 
 Score = 93.4 bits (233), Expect = 3e-24
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 39/126 (30%)

Query: 110 GKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRS 169
            KSLV+L +KPWDDE D+ +L+E +R I M+G                            
Sbjct: 2   AKSLVVLKVKPWDDEVDLDELEEKIRAILMDG---------------------------- 33

Query: 170 GEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDI 229
              L+       +KL P+ +G+K LQI   + DD    D L E  +  E   + VQS D+
Sbjct: 34  ---LL----WGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEA-ISEE---DGVQSVDV 82

Query: 230 VAFNKI 235
            AFNK+
Sbjct: 83  EAFNKL 88

EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction. Length = 88
>gnl|CDD|201421 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain Back     alignment and domain information
>gnl|CDD|214886 smart00888, EF1_GNE, EF-1 guanine nucleotide exchange domain Back     alignment and domain information
>gnl|CDD|225003 COG2092, EFB1, Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|198341 cd10308, GST_C_eEF1b_like, Glutathione S-transferase C-terminal-like, alpha helical domain of eukaryotic translation Elongation Factor 1 beta Back     alignment and domain information
>gnl|CDD|198343 cd10310, GST_C_CysRS_N, Glutathione S-transferase C-terminal-like, alpha helical domain of Cysteinyl-tRNA synthetase from higher eukaryotes Back     alignment and domain information
>gnl|CDD|198322 cd10289, GST_C_AaRS_like, Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA synthetases and similar domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
KOG1668231 consensus Elongation factor 1 beta/delta chain [Tr 100.0
cd0029288 EF1B Elongation factor 1 beta (EF1B) guanine nucle 99.96
PF0073689 EF1_GNE: EF-1 guanine nucleotide exchange domain; 99.95
PRK0043588 ef1B elongation factor 1-beta; Validated 99.95
TIGR0048988 aEF-1_beta translation elongation factor aEF-1 bet 99.89
COG209288 EFB1 Translation elongation factor EF-1beta [Trans 99.75
PF1058728 EF-1_beta_acid: Eukaryotic elongation factor 1 bet 96.99
PF1449799 GST_C_3: Glutathione S-transferase, C-terminal dom 93.16
PF0004395 GST_C: Glutathione S-transferase, C-terminal domai 90.42
cd0320096 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed 87.11
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=8.2e-62  Score=437.75  Aligned_cols=194  Identities=49%  Similarity=0.759  Sum_probs=157.0

Q ss_pred             CCCChhhHHHHHhcCCCCCC-CCchHHHHHHHHHhHhhhh--cCCCCCCCceecCCCCCCCCCccccccccccccCCCCC
Q 040594            1 YQASKNDLTVYSALSKPPSS-EYVNVSRWYNYIDALLRIS--GVSAEGSGVIVEGSAPIATLPVDDIKASSTAAADDDND   77 (286)
Q Consensus         1 Y~PSQADVaVFeALssaP~A-kyPHVaRWYnHIaSf~ees--~~~g~~~~~~~~g~A~~a~~a~~~~ka~s~A~~~~ddD   77 (286)
                      |++|++|+.+|.++...|.+ .|+|+.|||+||.+|....  .++|....+...+++.. +++++  ..++++++.+|||
T Consensus        29 ~~~s~edv~vf~al~~ep~s~~~v~~~~w~~~l~a~~~~~~~~~~G~~~~~~~~~~~~~-a~~~~--~~~a~~ae~dddD  105 (231)
T KOG1668|consen   29 YQLSKEDVVVFAALGVEPQSARLVNAERWYSKLEALLRLLAKLLAGVSKALPAHGAPSV-AAPPA--VEAAAAAEADDDD  105 (231)
T ss_pred             CCcccccceeehhcccCcchhhhhHHHHHHHHHHHHHHHHhhcccccccccccCCCCcC-CCCcc--ccccccccccccc
Confidence            78999999999999988854 9999999999999997642  44454443333333221 11111  1223566788999


Q ss_pred             ccCCCCCCcHHHHH-HH---HHHHHHHHhh--hcccccccceEEEEeecCCCcccHHHHHHHhhceeccCceeccccccC
Q 040594           78 DVYLFGEKTEEEKK-AA---EERSTAIKTS--AKKEEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAG  151 (286)
Q Consensus        78 D~dLFG~~~eee~~-a~---~~r~~~~~~~--~kk~~~~KS~v~ldiKPwddetd~~~l~~~Vr~i~mdGL~w~te~~~~  151 (286)
                      |+||||+++|||++ ++   +||.++|+.+  +|+..++||+||||||||||||||.+|+++||+|+|+||+|       
T Consensus       106 DiDLFGsd~EEEd~eA~~~~eErla~y~~kka~k~~~iakssvlLdvkpwddeTdm~~~e~~vrsi~~~gl~w-------  178 (231)
T KOG1668|consen  106 DVDLFGSDDEEEDEEAARIREERLAAYAAKKAKKPPPIAKSSVLLDVKPWDDETDMKELEECVRSIEMDGLVW-------  178 (231)
T ss_pred             cccccCCccccchhHHHHHHhhhhhhhhHHhccCCcccccceEEeecCCcCCCCCHHHHHHHHHHhhhcccee-------
Confidence            99999999888766 33   3444555432  22345999999999999999999999999999999999999       


Q ss_pred             CCCCCccccccchhhhcccceeeeeeecCCceeeeeeeeeeeEEEEEEEecCccChhhHHHhhhcccCCCCcccchhhhh
Q 040594          152 QQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVA  231 (286)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~v~~~~~c~g~~KlvpvgyGIkKLqi~~vieDd~vsvd~l~e~~~~~e~~ed~VQS~Di~a  231 (286)
                                                  |++||||||||||||||+|||+||+||+|+|+|+   ++.+|||||||||++
T Consensus       179 ----------------------------gasklvpvGygikKlqi~~vveddkvs~D~l~e~---i~~~e~~Vqs~di~a  227 (231)
T KOG1668|consen  179 ----------------------------GASKLVPVGYGIKKLQIQCVVEDDKVSIDDLIEE---ITKFEDHVQSVDIAA  227 (231)
T ss_pred             ----------------------------ccccccccccceeeEEEEEEEEcCccccchhHHH---hhhhhcceeeehhhh
Confidence                                        9999999999999999999999999999999999   567899999999999


Q ss_pred             hhhh
Q 040594          232 FNKI  235 (286)
Q Consensus       232 fnKi  235 (286)
                      ||||
T Consensus       228 fnki  231 (231)
T KOG1668|consen  228 FNKI  231 (231)
T ss_pred             cccC
Confidence            9997

>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain Back     alignment and domain information
>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PRK00435 ef1B elongation factor 1-beta; Validated Back     alignment and domain information
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta Back     alignment and domain information
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B Back     alignment and domain information
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione Back     alignment and domain information
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1b64_A91 Solution Structure Of The Guanine Nucleotide Exchan 7e-16
1ije_B90 Nucleotide Exchange Intermediates In The Eef1a-eef1 1e-10
1f60_B94 Crystal Structure Of The Yeast Elongation Factor Co 1e-10
2b7b_B94 Yeast Guanine Nucleotide Exchange Factor Eef1balpha 6e-10
>pdb|1B64|A Chain A, Solution Structure Of The Guanine Nucleotide Exchange Factor Domain From Human Elongation Factor-One Beta, Nmr, 20 Structures Length = 91 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 65/126 (51%), Gaps = 38/126 (30%)
Query: 110 GKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRS 169
            KS +LLD+KPWDDETD+ KL+E VR I+ +G    +                       
Sbjct: 4   AKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGS----------------------- 40
Query: 170 GEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDI 229
                       +KLVPVGYGIKKLQI   + DD V  D ++EE + A    +YVQS D+
Sbjct: 41  ------------SKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDV 85
Query: 230 VAFNKI 235
            AFNKI
Sbjct: 86  AAFNKI 91
>pdb|1IJE|B Chain B, Nucleotide Exchange Intermediates In The Eef1a-eef1ba Complex Length = 90 Back     alignment and structure
>pdb|1F60|B Chain B, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 94 Back     alignment and structure
>pdb|2B7B|B Chain B, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a Mutant In Complex With Eef1a And Gdp Length = 94 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1f60_B94 Elongation factor EEF1BA; protein-protein complex, 1e-31
1b64_A91 Elongation factor 1-beta; guanine nucleotide excha 2e-28
1gh8_A89 Translation elongation factor 1BETA; alpha-beta sa 4e-14
2yy3_A91 Elongation factor 1-beta; structural genomics, NPP 1e-07
2hra_A209 Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, l 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B* Length = 94 Back     alignment and structure
 Score =  111 bits (280), Expect = 1e-31
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 38/131 (29%)

Query: 105 KKEEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGE 164
             +   KS+V LD+KPWDDET+++++   V+ I+MEG                       
Sbjct: 2   PAKPAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEG----------------------- 38

Query: 165 FLRRSGEVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYV 224
                   L         + +P+G+GIKKLQI   + DD VS+D+L +     E   ++V
Sbjct: 39  --------LT----WGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDEDHV 83

Query: 225 QSCDIVAFNKI 235
           QS DI A  K+
Sbjct: 84  QSTDIAAMQKL 94
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1 Length = 91 Back     alignment and structure
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1 Length = 89 Back     alignment and structure
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii} Length = 91 Back     alignment and structure
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A Length = 209 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
1f60_B94 Elongation factor EEF1BA; protein-protein complex, 100.0
1b64_A91 Elongation factor 1-beta; guanine nucleotide excha 100.0
1gh8_A89 Translation elongation factor 1BETA; alpha-beta sa 99.98
2yy3_A91 Elongation factor 1-beta; structural genomics, NPP 99.97
2hqt_A124 GU4 nucleic-binding protein 1; GST-fold, biosynthe 96.79
3ic8_A310 Uncharacterized GST-like proteinprotein; glutathio 94.75
2hra_A209 Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, l 89.19
3bpd_A100 Uncharacterized protein; heptamer, Mg+2 ION, PSI-2 88.33
2raq_A97 Conserved protein MTH889; alpha-beta protein, stru 86.4
3m8n_A225 Possible glutathione S-transferase; PSI-II, struct 85.76
1r5a_A218 Glutathione transferase; glutathione S-transferase 81.08
3vk9_A216 Glutathione S-transferase delta; glutathione bindi 80.37
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B* Back     alignment and structure
Probab=100.00  E-value=1.7e-37  Score=246.29  Aligned_cols=91  Identities=44%  Similarity=0.728  Sum_probs=87.7

Q ss_pred             cccccceEEEEeecCCCcccHHHHHHHhhceeccCceeccccccCCCCCCccccccchhhhcccceeeeeeecCCceeee
Q 040594          107 EEFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVP  186 (286)
Q Consensus       107 ~~~~KS~v~ldiKPwddetd~~~l~~~Vr~i~mdGL~w~te~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~c~g~~Klvp  186 (286)
                      |+++||+|+|+|||||+||||++|+++||+|+|+||.|                                   |++|++|
T Consensus         4 k~~~ks~v~l~VkP~d~etDl~~L~~~Vr~i~~~Gl~w-----------------------------------g~~k~~p   48 (94)
T 1f60_B            4 KPAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTW-----------------------------------GAHQFIP   48 (94)
T ss_dssp             -CCCEEEEEEEEEESSTTSCHHHHHHHHHTCCCTTEEE-----------------------------------EEEEEEE
T ss_pred             CceeeEEEEEEEccCCCCcCHHHHHHHHHHhCcCCcEE-----------------------------------EEEEEEE
Confidence            46999999999999999999999999999999999999                                   8999999


Q ss_pred             eeeeeeeEEEEEEEecCccChhhHHHhhhcccCCCCcccchhhhhhhhh
Q 040594          187 VGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI  235 (286)
Q Consensus       187 vgyGIkKLqi~~vieDd~vsvd~l~e~~~~~e~~ed~VQS~Di~afnKi  235 (286)
                      ||||||||||+|+|+||++|+|+|+|+   ++.||||||||||++||||
T Consensus        49 iafGlkkL~i~~vveDd~~~tD~lee~---i~~~ed~VqSvdI~~~~ki   94 (94)
T 1f60_B           49 IGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDEDHVQSTDIAAMQKL   94 (94)
T ss_dssp             EETTEEEEEEEEEEETTTCCHHHHHHH---HHTCTTTEEEEEEEEEEEC
T ss_pred             EeeeeEEEEEEEEEECCccChHHHHHH---HHhccCceeEEEEEEEEcC
Confidence            999999999999999999999999999   5789999999999999996
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1 Back     alignment and structure
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1 Back     alignment and structure
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii} Back     alignment and structure
>2hqt_A GU4 nucleic-binding protein 1; GST-fold, biosynthetic protein, RNA binding; 1.90A {Saccharomyces cerevisiae} SCOP: a.45.1.2 PDB: 2hrk_B 2hsm_B 2hsn_B Back     alignment and structure
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV} Back     alignment and structure
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A Back     alignment and structure
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1 Back     alignment and structure
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1 Back     alignment and structure
>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris} Back     alignment and structure
>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5 Back     alignment and structure
>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1f60b_90 d.58.12.1 (B:) Guanine nucleotide exchange factor 5e-30
d1b64a_91 d.58.12.1 (A:) Guanine nucleotide exchange factor 5e-29
d1gh8a_89 d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacteriu 3e-22
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (267), Expect = 5e-30
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 38/125 (30%)

Query: 111 KSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSG 170
           KS+V LD+KPWDDET+++++   V+ I+MEG                             
Sbjct: 4   KSIVTLDVKPWDDETNLEEMVANVKAIEMEG----------------------------- 34

Query: 171 EVLVKFRCISGAKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIV 230
             L         + +P+G+GIKKLQI   + DD VS+D+L +     E   ++VQS DI 
Sbjct: 35  --LT----WGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDEDHVQSTDIA 85

Query: 231 AFNKI 235
           A  K+
Sbjct: 86  AMQKL 90
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1f60b_90 Guanine nucleotide exchange factor (GEF) domain fr 100.0
d1b64a_91 Guanine nucleotide exchange factor (GEF) domain fr 100.0
d1gh8a_89 aEF-1beta {Archaeon Methanobacterium thermoautotro 99.95
d2hrkb1118 GU4 nucleic-binding protein 1, Arc1p {Baker's yeas 96.59
d1v2aa1125 Class delta GST {Mosquito (Anopheles dirus b), iso 90.91
d1r5aa1129 Class delta GST {Mosquito (Anopheles dirus b), iso 88.78
d1ljra1165 Class theta GST {Human (Homo sapiens) [TaxId: 9606 88.36
d1jlwa1127 Class delta GST {Mosquito (Anopheles dirus b), iso 88.18
d1jlva1123 Class delta GST {Mosquito (Anopheles dirus b), iso 87.64
d2cvda1124 Class sigma GST {Human (Homo sapiens) [TaxId: 9606 85.41
d2gsqa1127 Class sigma GST {Squid (Ommastrephes sloani pacifi 85.33
d1k3ya1142 Class alpha GST {Human (Homo sapiens), (a1-1) [Tax 85.2
d1okta1126 Pf GST {Malarial parasite (Plasmodium falciparum) 85.15
d1axda1129 Class phi GST {Maize (Zea mays), type I [TaxId: 45 85.13
d1b48a1143 Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax 84.24
d3gtub1140 Class mu GST {Human (Homo sapiens) [TaxId: 9606]} 82.09
d2gsta1133 Class mu GST {Rat (Rattus norvegicus) [TaxId: 1011 81.87
d2a2ra1132 Class pi GST {Human (Homo sapiens) [TaxId: 9606]} 81.16
d1gsua1133 Class mu GST {Chicken (Gallus gallus) [TaxId: 9031 81.06
d1m0ua1127 Class sigma GST {Fruit fly (Drosophila melanogaste 80.49
d1f2ea1121 Class beta GST {Sphingomonas paucimobilis [TaxId: 80.19
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-36  Score=234.00  Aligned_cols=90  Identities=44%  Similarity=0.732  Sum_probs=87.0

Q ss_pred             ccccceEEEEeecCCCcccHHHHHHHhhceeccCceeccccccCCCCCCccccccchhhhcccceeeeeeecCCceeeee
Q 040594          108 EFGKSLVLLDIKPWDDETDIQKLDEAVRGIKMEGQCRSTEVNAGQQRPVPFQRKSGEFLRRSGEVLVKFRCISGAKLVPV  187 (286)
Q Consensus       108 ~~~KS~v~ldiKPwddetd~~~l~~~Vr~i~mdGL~w~te~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~c~g~~Klvpv  187 (286)
                      +++||+|+|+|||||+||||++|+++||+++++|+.|                                   |++|++||
T Consensus         1 p~aKs~vvl~VkP~d~e~Dl~~l~~~ik~i~~~gl~~-----------------------------------g~~~~~Pi   45 (90)
T d1f60b_           1 PAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTW-----------------------------------GAHQFIPI   45 (90)
T ss_dssp             CCCEEEEEEEEEESSTTSCHHHHHHHHHTCCCTTEEE-----------------------------------EEEEEEEE
T ss_pred             CcceEEEEEEEeeCCCCCCHHHHHHHHHHhCcCccEE-----------------------------------eEEEEEEE
Confidence            4799999999999999999999999999999999999                                   88999999


Q ss_pred             eeeeeeEEEEEEEecCccChhhHHHhhhcccCCCCcccchhhhhhhhh
Q 040594          188 GYGIKKLQIMLTIVDDLVSVDNLIEEHLMAEPINEYVQSCDIVAFNKI  235 (286)
Q Consensus       188 gyGIkKLqi~~vieDd~vsvd~l~e~~~~~e~~ed~VQS~Di~afnKi  235 (286)
                      |||||||||+|+|+||++|+|+|+|+   ++.+||+||||||+|||||
T Consensus        46 afGlkkL~i~~vveDd~~~~D~lee~---i~~~Ed~VqSvdI~~~~ki   90 (90)
T d1f60b_          46 GFGIKKLQINCVVEDDKVSLDDLQQS---IEEDEDHVQSTDIAAMQKL   90 (90)
T ss_dssp             ETTEEEEEEEEEEETTTCCHHHHHHH---HHTCTTTEEEEEEEEEEEC
T ss_pred             eeeeeeEEEEEEEEeCCcCHHHHHHH---HHhhcCceeEEEEEEEecC
Confidence            99999999999999999999999999   5789999999999999996
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} Back     information, alignment and structure
>d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} Back     information, alignment and structure
>d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]} Back     information, alignment and structure
>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} Back     information, alignment and structure
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} Back     information, alignment and structure
>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} Back     information, alignment and structure
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} Back     information, alignment and structure
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} Back     information, alignment and structure
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} Back     information, alignment and structure