Citrus Sinensis ID: 040640

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
cccccccHHHHHHHHHHHHHHHccccHHHHHHHccccccEEEEccccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEHHHccccccEEEEc
cccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEEEEEEEEEcccccccHHHHEEEEEccHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEccccccccccEEEccccccccccEEEEEEccccccEEEEEcccEEEEcccccEEEEEEccHEHEHccccEEEEEEc
LVNHGVSSSLVEKMRAETQkdffdlpieeknkywhrpgdiegfGQLFIASeeqkldwgygftiftlpihsrrphlfpklplpfrdTLEVYLTEVKNLTLKMLDQMEKALrmdpnemkemnydppcqqpeqviglnshsdASALTILLQINEmdglqikkdgnWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
lvnhgvssslvEKMRaetqkdffdlpIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
*********************FFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKML*************************************ASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFL*
LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
*********LVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCFLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.933 0.508 0.543 4e-59
D4N500364 Thebaine 6-O-demethylase N/A no 0.964 0.516 0.514 1e-55
D4N501364 Probable 2-oxoglutarate/F N/A no 0.964 0.516 0.519 1e-55
D4N502360 Codeine O-demethylase OS= N/A no 0.964 0.522 0.505 8e-54
A2A1A0352 S-norcoclaurine synthase N/A no 0.964 0.534 0.383 6e-36
P51091357 Leucoanthocyanidin dioxyg N/A no 0.928 0.507 0.323 6e-25
Q7XZQ8365 Flavone synthase OS=Petro N/A no 0.907 0.484 0.324 3e-23
Q96323356 Leucoanthocyanidin dioxyg no no 0.928 0.508 0.297 3e-23
P51092 430 Leucoanthocyanidin dioxyg N/A no 0.928 0.420 0.303 6e-23
P51093362 Leucoanthocyanidin dioxyg no no 0.928 0.5 0.318 2e-21
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/195 (54%), Positives = 146/195 (74%), Gaps = 13/195 (6%)

Query: 1   LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYG 60
           LVNHG+ SS ++K+++E Q DFF+LP+EEK K+W RP +IEGFGQ F+ SE+QKLDW   
Sbjct: 86  LVNHGIDSSFLDKVKSEIQ-DFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADL 144

Query: 61  FTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-- 118
           F     P+  R+PHLFPKLPLPFRDTLE+Y +EV+++   ++ +M +AL + P E+++  
Sbjct: 145 FFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLF 204

Query: 119 ----------MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKL 168
                     MNY PPC QP+QVIGL  HSD+  LT+L+Q+N+++GLQIKKDG WV VK 
Sbjct: 205 DDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKP 264

Query: 169 LPDAFIINVGDVLDV 183
           LP+AFI+N+GDVL++
Sbjct: 265 LPNAFIVNIGDVLEI 279

Arabidopsis thaliana (taxid: 3702)
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|P51092|LDOX_PETHY Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1 Back     alignment and function description
>sp|P51093|LDOX_VITVI Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
225453297 364 PREDICTED: protein SRG1 [Vitis vinifera] 0.933 0.5 0.626 7e-67
297734657 316 unnamed protein product [Vitis vinifera] 0.933 0.575 0.626 7e-67
147776748 395 hypothetical protein VITISV_032872 [Viti 0.933 0.460 0.621 6e-66
225453295 348 PREDICTED: protein SRG1 [Vitis vinifera] 0.933 0.522 0.611 4e-65
297734658 367 unnamed protein product [Vitis vinifera] 0.933 0.495 0.611 5e-65
255575141 364 Leucoanthocyanidin dioxygenase, putative 0.964 0.516 0.605 9e-65
224061381 359 predicted protein [Populus trichocarpa] 0.964 0.523 0.587 2e-61
449434270 358 PREDICTED: protein SRG1-like [Cucumis sa 0.964 0.525 0.572 4e-61
224061385 355 predicted protein [Populus trichocarpa] 0.933 0.512 0.585 4e-61
359483589 361 PREDICTED: LOW QUALITY PROTEIN: protein 0.948 0.512 0.578 2e-60
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 156/193 (80%), Gaps = 11/193 (5%)

Query: 1   LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYG 60
           L+NHGVSSSLVEK++AETQ +FF+LP+EEK K+W +PG++EGFGQ F+ SEEQKLDWG  
Sbjct: 85  LINHGVSSSLVEKVKAETQ-EFFNLPLEEKKKFWQKPGEVEGFGQAFVVSEEQKLDWGDI 143

Query: 61  FTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-- 118
           F + TLP H R+PHLFPKLPLPFRDTLEVY+ E++NL L ML  MEKAL+++ NEM++  
Sbjct: 144 FFMSTLPTHFRKPHLFPKLPLPFRDTLEVYVVEMRNLALTMLSFMEKALKIEVNEMRKLF 203

Query: 119 --------MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLLP 170
                   MNY PPC +PEQVIGL  HSD+  LTILLQ+NE++GLQI+KDG W+ +  LP
Sbjct: 204 EQGLQAMRMNYYPPCPKPEQVIGLTPHSDSVGLTILLQVNEVEGLQIRKDGMWIPITPLP 263

Query: 171 DAFIINVGDVLDV 183
           +AFI+N+GD+L++
Sbjct: 264 NAFIVNIGDILEI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453295|ref|XP_002269432.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734658|emb|CBI16709.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434270|ref|XP_004134919.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479526|ref|XP_004155625.1| PREDICTED: protein SRG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483589|ref|XP_003632983.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.933 0.508 0.543 2.3e-55
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.917 0.507 0.530 1.7e-52
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.933 0.504 0.546 4.4e-52
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.933 0.511 0.520 1.5e-51
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.933 0.511 0.528 2.4e-51
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.933 0.5 0.427 4.9e-37
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.933 0.515 0.357 2.6e-31
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.933 0.521 0.360 1.3e-29
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.933 0.522 0.345 2.1e-29
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.933 0.522 0.345 9.1e-29
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 106/195 (54%), Positives = 146/195 (74%)

Query:     1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYG 60
             LVNHG+ SS ++K+++E Q DFF+LP+EEK K+W RP +IEGFGQ F+ SE+QKLDW   
Sbjct:    86 LVNHGIDSSFLDKVKSEIQ-DFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADL 144

Query:    61 FTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-- 118
             F     P+  R+PHLFPKLPLPFRDTLE+Y +EV+++   ++ +M +AL + P E+++  
Sbjct:   145 FFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLF 204

Query:   119 ----------MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKL 168
                       MNY PPC QP+QVIGL  HSD+  LT+L+Q+N+++GLQIKKDG WV VK 
Sbjct:   205 DDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKP 264

Query:   169 LPDAFIINVGDVLDV 183
             LP+AFI+N+GDVL++
Sbjct:   265 LPNAFIVNIGDVLEI 279
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-86
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-56
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 7e-43
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 9e-40
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-39
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 9e-35
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-31
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-29
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-27
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-27
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-25
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-25
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-23
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-21
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 3e-20
PLN02904357 PLN02904, PLN02904, oxidoreductase 5e-19
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 6e-19
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 7e-19
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-17
PLN02997325 PLN02997, PLN02997, flavonol synthase 7e-16
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-15
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-13
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-12
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-12
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-09
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-07
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 6e-07
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  258 bits (661), Expect = 2e-86
 Identities = 111/194 (57%), Positives = 142/194 (73%), Gaps = 12/194 (6%)

Query: 1   LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYG 60
           LVNHG+ SS ++K+++E Q DFF+LP+EEK K W RPG+IEGFGQ F+ SE+QKLDW   
Sbjct: 86  LVNHGIDSSFLDKVKSEIQ-DFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADM 144

Query: 61  FTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-- 118
           F +   P+  R+PHLFPKLPLPFRDTLE Y  EVK++   +  +M  AL + P EM++  
Sbjct: 145 FFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLF 204

Query: 119 ---------MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVLVKLL 169
                    MNY PPC QP+QVIGL  HSDA  LTILLQ+NE++GLQIKKDG WV VK L
Sbjct: 205 DDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPL 264

Query: 170 PDAFIINVGDVLDV 183
           P+A ++NVGD+L++
Sbjct: 265 PNALVVNVGDILEI 278

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02997325 flavonol synthase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02704335 flavonol synthase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02904357 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.75
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.63
PLN03176120 flavanone-3-hydroxylase; Provisional 98.92
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 86.71
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 81.84
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.9e-57  Score=378.31  Aligned_cols=192  Identities=58%  Similarity=1.036  Sum_probs=174.8

Q ss_pred             CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640            1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP   80 (195)
Q Consensus         1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~   80 (195)
                      |+||||+.+++++++++++ +||+||.|+|+++....+..+||+........+..||+|.|.+...|.....+|.||+.+
T Consensus        86 v~nHGI~~~li~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p  164 (357)
T PLN02216         86 LVNHGIDSSFLDKVKSEIQ-DFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLP  164 (357)
T ss_pred             EECCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccch
Confidence            6899999999999999999 999999999999977555678997655444456689999998876665556789999988


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-----------CcCCCCCCCCCcccccccccCCCceEEEEec
Q 040640           81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-----------MNYDPPCQQPEQVIGLNSHSDASALTILLQI  149 (195)
Q Consensus        81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~  149 (195)
                      +.||+.+++|+++|.+|+.+|+++||++||+++++|.+           ++|||||++++..+|+++|||+|+||||+|+
T Consensus       165 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~  244 (357)
T PLN02216        165 LPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQV  244 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEec
Confidence            99999999999999999999999999999999988765           8999999998889999999999999999995


Q ss_pred             CCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640          150 NEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF  193 (195)
Q Consensus       150 ~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~  193 (195)
                      ++++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus       245 ~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~  288 (357)
T PLN02216        245 NEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIE  288 (357)
T ss_pred             CCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccC
Confidence            56999999999999999999999999999999999999999985

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-24
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-24
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 4e-24
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-13
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-06
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-05
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 107/198 (54%), Gaps = 17/198 (8%)
Query: 1   LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWH--RPGDIEGFGQLFIASEEQKLDWG 58
           L+NHG+ + L+E+++ +  ++FF L +EEK KY +    G I+G+G     +   +L+W 
Sbjct: 82  LINHGIPADLMERVK-KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWE 140
Query: 59  YGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE 118
             F     P   R   ++PK P  + +    Y   ++ L  K+   +   L ++P+ +++
Sbjct: 141 DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK 200
Query: 119 -------------MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVL 165
                        +NY P C QPE  +G+ +H+D SALT +L  N + GLQ+  +G WV 
Sbjct: 201 EVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVT 259
Query: 166 VKLLPDAFIINVGDVLDV 183
            K +PD+ ++++GD L++
Sbjct: 260 AKCVPDSIVMHIGDTLEI 277
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 4e-76
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-73
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 9e-43
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-38
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-31
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 7e-31
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  231 bits (591), Expect = 4e-76
 Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 17/198 (8%)

Query: 1   LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHR--PGDIEGFGQLFIASEEQKLDWG 58
           L+NHG+ + L+E+++    ++FF L +EEK KY +    G I+G+G     +   +L+W 
Sbjct: 82  LINHGIPADLMERVKKAG-EEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWE 140

Query: 59  YGFTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE 118
             F     P   R   ++PK P  + +    Y   ++ L  K+   +   L ++P+ +++
Sbjct: 141 DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK 200

Query: 119 -------------MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDGNWVL 165
                        +NY P C QPE  +G+ +H+D SALT +L  N + GLQ+  +G WV 
Sbjct: 201 EVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVT 259

Query: 166 VKLLPDAFIINVGDVLDV 183
            K +PD+ ++++GD L++
Sbjct: 260 AKCVPDSIVMHIGDTLEI 277
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-56  Score=371.09  Aligned_cols=191  Identities=31%  Similarity=0.666  Sum_probs=174.6

Q ss_pred             CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC--CCccccccccccccccccCCcccccccccCCCCCCCCCCCC
Q 040640            1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP--GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPK   78 (195)
Q Consensus         1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~   78 (195)
                      |+||||+.++++++++.++ +||+||.|+|+++....  ..++||+........+..||+|+|.+...|.....+|.||+
T Consensus        82 v~nHGi~~~l~~~~~~~~~-~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~  160 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGE-EFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  160 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHH-HHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EeCCCCCHHHHHHHHHHHH-HHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCC
Confidence            6899999999999999999 99999999999998754  36899987665555667899999999876643356799999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-------------CcCCCCCCCCCcccccccccCCCceEE
Q 040640           79 LPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-------------MNYDPPCQQPEQVIGLNSHSDASALTI  145 (195)
Q Consensus        79 ~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------~~~yp~~~~~~~~~g~~~HtD~~~lTl  145 (195)
                      .+++||+.+++|+++|.+++.+|+++||++||+++++|.+             ++|||||++++..+|+++|||+|+|||
T Consensus       161 ~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTl  240 (356)
T 1gp6_A          161 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF  240 (356)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEE
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEE
Confidence            9999999999999999999999999999999999887743             899999999888899999999999999


Q ss_pred             EEecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640          146 LLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF  193 (195)
Q Consensus       146 L~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~  193 (195)
                      |+| +.++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus       241 L~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~  287 (356)
T 1gp6_A          241 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL  287 (356)
T ss_dssp             EEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCC
T ss_pred             EEE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccC
Confidence            999 77999999999999999999999999999999999999999985
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 8e-23
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-22
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 5e-22
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 7e-07
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 90.8 bits (224), Expect = 8e-23
 Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 18/200 (9%)

Query: 1   LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYG 60
           L + G++ + ++  +     DFF+   E + +    P      G   + SE        G
Sbjct: 34  LTDCGLTDTELKSAKDLV-IDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTG 92

Query: 61  FTIFTLPIHSRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMN 120
                   +S            F      Y       +  +  ++ +A   +P+   E  
Sbjct: 93  SYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAF 152

Query: 121 YDPPCQQ--------------PEQVIGLNSHSDASALTILLQIN---EMDGLQIKKDGNW 163
            D                    EQ + +  H D S +T++ Q         LQ +  G +
Sbjct: 153 LDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAF 212

Query: 164 VLVKLLPDAFIINVGDVLDV 183
             +   PDA ++  G +  +
Sbjct: 213 TDLPYRPDAVLVFCGAIATL 232
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.1e-51  Score=335.75  Aligned_cols=191  Identities=31%  Similarity=0.666  Sum_probs=168.1

Q ss_pred             CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC--CCccccccccccccccccCCcccccccccCCCCCCCCCCCC
Q 040640            1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP--GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPK   78 (195)
Q Consensus         1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~   78 (195)
                      |+||||+.+++++++++++ +||+||.|+|+++....  +.+.||+...........++.+.+.....+.....+|.||+
T Consensus        81 l~nHGI~~~li~~~~~~~~-~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~  159 (349)
T d1gp6a_          81 LINHGIPADLMERVKKAGE-EFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  159 (349)
T ss_dssp             EESCSCCHHHHHHHHHHHH-HHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EEccCCCHHHHHHHHHHHH-HHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccc
Confidence            5899999999999999999 99999999999998754  34556655444445556677666554444444457789999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-------------CcCCCCCCCCCcccccccccCCCceEE
Q 040640           79 LPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-------------MNYDPPCQQPEQVIGLNSHSDASALTI  145 (195)
Q Consensus        79 ~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------~~~yp~~~~~~~~~g~~~HtD~~~lTl  145 (195)
                      .++.|++.+++|+++|.+++.+|+++++.+||+++++|.+             ++|||+++.+...+|+++|||+|+|||
T Consensus       160 ~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTl  239 (349)
T d1gp6a_         160 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF  239 (349)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEE
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEE
Confidence            9999999999999999999999999999999999988764             789999998888999999999999999


Q ss_pred             EEecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640          146 LLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF  193 (195)
Q Consensus       146 L~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~  193 (195)
                      |+| +.++||||.++|+|++|+|.+|++|||+||+||+||||+||||+
T Consensus       240 L~q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~  286 (349)
T d1gp6a_         240 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL  286 (349)
T ss_dssp             EEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCC
T ss_pred             Eec-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcC
Confidence            999 78999999999999999999999999999999999999999985
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure