Citrus Sinensis ID: 040653

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSPSSSTACTRKTLNQCQEKPKLGSKKFIAKTDSYPIRTRASKRTKALFFSTPEQEKSYGQDQLPNLDDTDSIGGDIVSAINTCDKDKGYYSSQNSDGKVKDSEFASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCEDRLAI
cccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccc
cHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccc
cgkscrlrwlnylrpdikrgnishdEDELIIRLLNLLANRWSLiagrlpgrtdnenmksriigaptlenkklqdhhqspssstactRKTLnqcqekpklgskkfiaktdsypirtraskrtkalffstpeqeksygqdqlpnlddtdsiggDIVSAINtcdkdkgyyssqnsdgkvkdsefaSVDELIRSEFEWFRALFLYTYIWVLHMNYInndgsicvycedrlai
cgkscrlrwlnylrpdikrgnishdEDELIIRLLNLLANRWSLIAgrlpgrtdnenmKSRIIGAptlenkklqdhhqspssstactrktlnqcqekpklgskkfiaktdsypirtraskrtkalffstpeqeksygqdqlpnlDDTDSIGGDIVSAINTCDKDKGyyssqnsdgkvkdSEFASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCEDRLAI
CGKSCRLRWLNYLRPDIKRGNISHdedeliirllnllanrWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSPSSSTACTRKTLNQCQEKPKLGSKKFIAKTDSYPIRTRASKRTKALFFSTPEQEKSYGQDQLPNLDDTDSIGGDIVSAINTCDKDKGYYSSQNSDGKVKDSEFASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCEDRLAI
****CRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRL******************************************************************************************************GDIVSAINTCDK******************FASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCED****
CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIG**********************************************************************************************************QNSDGKVKDSEFASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCEDRLAI
CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENK****************RKTLNQCQEKPKLGSKKFIAKTDSYPIRTRASKRTKALFFSTPEQEKSYGQDQLPNLDDTDSIGGDIVSAINTCDKDKGYYSSQNSDGKVKDSEFASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCEDRLAI
CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLEN****************************************************************************************************************ASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCEDRL**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSPSSSTACTRKTLNQCQEKPKLGSKKFIAKTDSYPIRTRASKRTKALFFSTPEQEKSYGQDQLPNLDDTDSIGGDIVSAINTCDKDKGYYSSQNSDGKVKDSEFASVDELIRSEFEWFRALFLYTYIWVLHMNYINNDGSICVYCEDRLAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query228 2.2.26 [Sep-21-2011]
Q9FJA2258 Transcription factor TT2 yes no 0.495 0.437 0.445 1e-23
P10290273 Anthocyanin regulatory C1 N/A no 0.241 0.201 0.854 3e-22
P20026267 Myb-related protein Hv1 O N/A no 0.241 0.205 0.836 4e-22
P81393232 Myb-related protein 308 O N/A no 0.614 0.603 0.403 7e-22
Q9SZP1282 Transcription repressor M no no 0.679 0.549 0.378 1e-21
Q9S9K9257 Transcription factor MYB3 no no 0.241 0.214 0.8 5e-21
Q38851236 Transcription repressor M no no 0.241 0.233 0.781 8e-21
Q38850249 Transcription repressor M no no 0.241 0.220 0.763 4e-20
P81395274 Myb-related protein 330 O N/A no 0.241 0.200 0.763 5e-20
P20025255 Myb-related protein Zm38 N/A no 0.241 0.215 0.763 7e-20
>sp|Q9FJA2|TT2_ARATH Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 81/148 (54%), Gaps = 35/148 (23%)

Query: 1   CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNE----- 55
           CGKSCRLRW NYLRP IKRGNIS DE+ELIIRL NLL NRWSLIAGRLPGRTDNE     
Sbjct: 51  CGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHW 110

Query: 56  --NMKSRIIGAPTLENKKLQDHHQSPSSSTACTRKTLNQCQEKPKLGSKKFIAKTDSYPI 113
             N++ R+    T + K+++  H + + +  C                           I
Sbjct: 111 NSNLRKRLPKTQTKQPKRIK--HSTNNENNVCV--------------------------I 142

Query: 114 RTRASKRTKALFFSTPEQEKSYGQDQLP 141
           RT+A + +K L FS    +K      LP
Sbjct: 143 RTKAIRCSKTLLFSDLSLQKKSSTSPLP 170
Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS).
Arabidopsis thaliana (taxid: 3702)
>sp|P10290|MYBC_MAIZE Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1 Back     alignment and function description
>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1 Back     alignment and function description
>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1 Back     alignment and function description
>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1 Back     alignment and function description
>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1 Back     alignment and function description
>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1 Back     alignment and function description
>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
387135362316 tannin-related R2R3 MYB transcription fa 0.530 0.382 0.541 2e-27
387135352316 tannin-related R2R3 MYB transcription fa 0.530 0.382 0.541 2e-27
387135346316 tannin-related R2R3 MYB transcription fa 0.530 0.382 0.534 4e-27
387135342312 tannin-related R2R3 MYB transcription fa 0.824 0.602 0.393 2e-26
387135334311 tannin-related R2R3 MYB transcription fa 0.820 0.601 0.398 2e-26
387135338311 tannin-related R2R3 MYB transcription fa 0.820 0.601 0.398 2e-26
387135336311 tannin-related R2R3 MYB transcription fa 0.714 0.524 0.431 5e-26
356545756304 PREDICTED: transcription factor MYB12-li 0.706 0.529 0.447 6e-26
359484279301 PREDICTED: transcription factor TT2-like 0.631 0.478 0.435 6e-26
387135332310 tannin-related R2R3 MYB transcription fa 0.530 0.390 0.529 1e-25
>gi|387135362|gb|AFJ53059.1| tannin-related R2R3 MYB transcription factor [Medicago sativa] Back     alignment and taxonomy information
 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 93/131 (70%), Gaps = 10/131 (7%)

Query: 1   CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNE--NMK 58
           CGKSCRLRWLNYLRPDIKRGNIS DE+ELIIRL  LL NRWSLIAGRLPGRTDNE  N  
Sbjct: 49  CGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYW 108

Query: 59  SRIIGAPTLENKKLQDHHQSPSSSTACTRKTLNQCQEKPKLGSKKFIAKTDSYPIRTRAS 118
           +  +G      KK++D  Q  +++++ T+  L+   +  K+  K+   K +SY +RT+A+
Sbjct: 109 NTNLG------KKVKDLDQQNTNNSSPTK--LSAQPKNAKIKQKQINPKPNSYVVRTKAT 160

Query: 119 KRTKALFFSTP 129
           K +K LF ++P
Sbjct: 161 KCSKVLFINSP 171

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|387135352|gb|AFJ53057.1| tannin-related R2R3 MYB transcription factor, partial [Medicago truncatula] Back     alignment and taxonomy information
>gi|387135346|gb|AFJ53054.1| tannin-related R2R3 MYB transcription factor [Trifolium arvense] Back     alignment and taxonomy information
>gi|387135342|gb|AFJ53052.1| tannin-related R2R3 MYB transcription factor, partial [Trifolium occidentale] Back     alignment and taxonomy information
>gi|387135334|gb|AFJ53048.1| tannin-related R2R3 MYB transcription factor, partial [Trifolium repens] Back     alignment and taxonomy information
>gi|387135338|gb|AFJ53050.1| tannin-related R2R3 MYB transcription factor, partial [Trifolium repens] Back     alignment and taxonomy information
>gi|387135336|gb|AFJ53049.1| tannin-related R2R3 MYB transcription factor, partial [Trifolium repens] Back     alignment and taxonomy information
>gi|356545756|ref|XP_003541301.1| PREDICTED: transcription factor MYB12-like [Glycine max] Back     alignment and taxonomy information
>gi|359484279|ref|XP_003633091.1| PREDICTED: transcription factor TT2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|387135332|gb|AFJ53047.1| tannin-related R2R3 MYB transcription factor, partial [Trifolium affine] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
TAIR|locus:2169538258 TT2 "TRANSPARENT TESTA 2" [Ara 0.684 0.604 0.329 1.1e-16
TAIR|locus:2038520246 MYB13 "myb domain protein 13" 0.407 0.378 0.427 2.5e-16
TAIR|locus:2149000336 MYB9 "myb domain protein 9" [A 0.241 0.163 0.6 4.9e-16
TAIR|locus:2121259282 MYB4 "myb domain protein 4" [A 0.679 0.549 0.324 2e-15
TAIR|locus:2075387321 MYB107 "myb domain protein 107 0.241 0.171 0.6 3.3e-15
TAIR|locus:2115708324 MYB74 "myb domain protein 74" 0.241 0.169 0.6 4.6e-15
TAIR|locus:2059883269 MYB7 "myb domain protein 7" [A 0.241 0.204 0.618 6.9e-15
TAIR|locus:2009452257 MYB3 "myb domain protein 3" [A 0.614 0.544 0.358 8.8e-15
TAIR|locus:2132584266 MYB85 "myb domain protein 85" 0.763 0.654 0.333 8.8e-15
TAIR|locus:2195528370 AtMYB103 "myb domain protein 1 0.385 0.237 0.417 1.4e-14
TAIR|locus:2169538 TT2 "TRANSPARENT TESTA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 57/173 (32%), Positives = 86/173 (49%)

Query:     1 CGKSCRLRWLNYLRPDIKRGNISHXXXXXXXXXXXXXXXXWSLIAGRLPGRTDNE----- 55
             CGKSCRLRW NYLRP IKRGNIS                 WSLIAGRLPGRTDNE     
Sbjct:    51 CGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHW 110

Query:    56 --NMKSRIIGAPTLENKKLQDHHQSPSSSTACTRKTLN-QCQEKPKLGSKKFIAK---TD 109
               N++ R+    T + K+++  H + + +  C  +T   +C  K  L S   + K   T 
Sbjct:   111 NSNLRKRLPKTQTKQPKRIK--HSTNNENNVCVIRTKAIRCS-KTLLFSDLSLQKKSSTS 167

Query:   110 SYPIRTRASKRTKALFFSTPEQE--KSYGQDQLPNLDDTDSIG-GDIVSAINT 159
               P++ +   +  +      E +  + + +   P+L D D +  G++ S +++
Sbjct:   168 PLPLKEQEMDQGGSSLMGDLEFDFDRIHSEFHFPDLMDFDGLDCGNVTSLVSS 220
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0006633 "fatty acid biosynthetic process" evidence=IMP
GO:0006970 "response to osmotic stress" evidence=IMP
TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132584 MYB85 "myb domain protein 85" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 5e-25
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 1e-23
COG5147 512 COG5147, REB1, Myb superfamily proteins, including 8e-07
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-06
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 3e-05
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-04
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information 
 Score = 98.2 bits (244), Expect = 5e-25
 Identities = 42/55 (76%), Positives = 49/55 (89%)

Query: 1   CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNE 55
           CGKSCRLRW+NYLRP +KRG I+ DE++LI+RL  LL NRWSLIAGR+PGRTDNE
Sbjct: 60  CGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNE 114

Length = 249
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 228
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.95
PLN03212249 Transcription repressor MYB5; Provisional 99.91
PLN03091 459 hypothetical protein; Provisional 99.89
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.41
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.33
PLN03212249 Transcription repressor MYB5; Provisional 99.32
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.26
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.24
PLN03091 459 hypothetical protein; Provisional 99.13
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.12
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.08
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.04
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.04
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 98.78
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.27
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.63
KOG0051607 consensus RNA polymerase I termination factor, Myb 97.63
KOG0051607 consensus RNA polymerase I termination factor, Myb 97.52
COG5147 512 REB1 Myb superfamily proteins, including transcrip 97.51
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 97.35
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.34
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.88
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.37
KOG1279506 consensus Chromatin remodeling factor subunit and 96.23
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 96.06
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 95.97
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 95.81
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.65
PRK13923170 putative spore coat protein regulator protein YlbO 93.81
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 91.89
PLN031421033 Probable chromatin-remodeling complex ATPase chain 88.1
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 85.93
KOG1194 534 consensus Predicted DNA-binding protein, contains 85.72
KOG2656 445 consensus DNA methyltransferase 1-associated prote 85.59
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 83.28
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=99.95  E-value=2.2e-27  Score=208.91  Aligned_cols=72  Identities=68%  Similarity=1.122  Sum_probs=70.5

Q ss_pred             CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhhcC
Q 040653            1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHH   76 (228)
Q Consensus         1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~   76 (228)
                      ||||||+||+|||+|+|+||.||+|||++|++||..+||+|++||++|||||||+| ||+   |+++++|++....
T Consensus        44 ~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeI-KN~---Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   44 CGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEV-KNH---WNTHLKKKLLKMG  115 (238)
T ss_pred             cchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHH-HHH---HHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999999999999 999   9999999998776

>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 1e-04
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 2e-04
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 3e-04
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 3e-04
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 3e-04
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 1  CGKSCRLRWLNYLRPDIKRGNISHXXXXXXXXXXXXXXXXWSLIAGRLPGRTDN 54
           GK CR RW N+L P++K+ + +                 W+ IA  LPGRTDN
Sbjct: 41 LGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDN 94
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 2e-32
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 2e-30
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 2e-29
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 1e-15
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 1e-27
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 1e-04
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 8e-26
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 3e-23
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 3e-14
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 8e-09
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-05
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 1e-07
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 4e-05
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 9e-05
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 4e-04
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-04
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
 Score =  113 bits (286), Expect = 2e-32
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 1   CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNE----- 55
             K CR RW N+L P + +   + +EDE I R    L ++WS+IA  +PGRTDN      
Sbjct: 36  SPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW 95

Query: 56  --NMKSRIIGAPTLENKKLQDHHQSPSSS 82
             ++  RI      +   L D  +   ++
Sbjct: 96  NSSISKRISTNSNHKEILLPDRSKKRKAA 124
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.9
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.89
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.89
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.87
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.87
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.84
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.84
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.82
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.81
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.77
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.75
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.71
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.7
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.67
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.66
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.66
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.64
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.63
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.61
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.41
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.57
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.57
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.47
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.46
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.46
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.41
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.41
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.39
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.37
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.35
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.34
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.33
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.31
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.24
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.21
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 99.15
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.09
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.86
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 98.86
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 98.83
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.77
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.45
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.42
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.39
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.29
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.22
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 97.48
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 98.09
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.0
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.85
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.85
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.76
2crg_A70 Metastasis associated protein MTA3; transcription 97.64
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.27
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 96.17
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.15
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 96.02
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 95.98
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 95.43
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 94.69
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 93.23
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 92.4
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 92.2
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 90.39
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 89.82
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 88.88
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 86.02
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 85.9
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
Probab=99.90  E-value=2e-24  Score=167.47  Aligned_cols=71  Identities=25%  Similarity=0.497  Sum_probs=66.9

Q ss_pred             CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhhc
Q 040653            1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDH   75 (228)
Q Consensus         1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~   75 (228)
                      |++||++||.++|+|++++++||+|||++|+++|.+||++|+.||.+|||||+++| |||   |+.++++..+..
T Consensus        35 t~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~-k~r---w~~l~r~~~~~~  105 (107)
T 2k9n_A           35 NPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNI-RNR---WMMIARHRAKHQ  105 (107)
T ss_dssp             CHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHH-HHH---HHHHHHHHHSST
T ss_pred             CHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHH-HHH---HHHHHhhHHHhh
Confidence            68999999999999999999999999999999999999999999999999999999 999   999888765543
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 228
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 5e-06
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 3e-05
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-04
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 6e-05
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 7e-05
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 8e-05
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 1e-04
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 2e-04
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-04
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 3e-04
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 0.001
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (94), Expect = 5e-06
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 19 RGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNE 55
          + + + +ED +I +    L NRW+ IA  LPGRTDN 
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 37
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.74
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.7
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.61
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.58
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.51
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.5
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.49
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.4
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.38
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.3
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.3
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.27
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.26
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.25
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.72
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.15
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.01
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.87
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 97.37
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.23
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 96.93
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 91.02
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 87.29
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 86.4
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 83.14
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5.4e-19  Score=117.75  Aligned_cols=47  Identities=36%  Similarity=0.536  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhh
Q 040653           19 RGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLEN   69 (228)
Q Consensus        19 k~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~   69 (228)
                      |++||+|||++|+++|.+||++|+.||.+|||||+++| |||   |+.+++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~-knr---~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAI-KNH---WNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHH-HHH---HHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHH-HHH---HHHHcC
Confidence            67999999999999999999999999999999999999 999   888764
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure