Citrus Sinensis ID: 040711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
Protein Sequence
MEKQQQRRELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPKLDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGNNGNNGTSGKQPGSPQLPQSCTTFSTN
Secondary Structure (PSIPRED)
ccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccccccccccccccEEccccccccccccHHHccccccEEEEEEcccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHcHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHccccccccccHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHcccEEEccccccccEEEEccccccccHHHHEEccccccEEEEEEcccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MEKQQQRRELALLHSgdflrrnsdhrmmensinrdkppiqemdffssnnnqlhdqerkiesSTLVLDsgvniglnlhtscsgisrtanddkshTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKlahgspqgqvnlkagafngmpsplmlaqqfmdprpsaalnvnepsvsddktrelsaspantAEVISKeldhpltknnipgkqvsnsedgaetsqswgspkspkldhqpkndeqvsevpfrkARVSvrarseaplisdgcqwrkygqkmakgnpcprayyrctmavgcpvrkqvqrCAEDRTILITtyegnhnhplppaatAMANTTSAAAAMLLSgsstskdgltssgffhsvpfastmatlsasapfptitldltqspnpmqflrgpsssstfplplhgypqllrygpaagmpnnmqlgqRHASMVETVTAAITSDPNFTAALAAAISTIigsnngnngnngtsgkqpgspqlpqscttfstn
Flexible Loop (DISEMBL)
MEKQQQRRELAllhsgdflrrnsdhrMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGIsrtanddkshtELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKTRELSASPANTAEVISKeldhpltknnipgkqvsnseDGAETsqswgspkspkldhqpkndeqvsevpfrkarvsvrarseaplisdgcqwrkygqKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGNNGNNGtsgkqpgspqlpqscttfstn
Low Complexity Region (SEG)
MEKQQQRRELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPKLDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPaatamanttsaaaamllsgsstsKDGLTSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTaalaaaistiigsnngnngnngtsgKQPGSPQLPQSCTTFSTN
Disordered region (IsUnstruct)
***************************************************************LVLDSGVNIGLNLHTSC**********************************************************************************************************************************************************************************************LISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGN**************************************FFHSVPFASTMATL*****F*TIT************************PLHGYPQLLRYG*****************MVETVTAAITSDPNFTAALAAAISTII********************************
Disordered Region (DISOPRED)
***************************************************************************************************************K****LDQTTKSYNDLQSQLL**********************************************************************************************************************************VRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP*******************************************************************************************************************VTAAITSDPNFTAALAAAIST***************************C******
Disordered Region (DISEMBL)
*********LALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALN******************ANTAEVISKELDHPLTKNNIPGK************************************PFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGNNGNN**********************
Disordered Region (DISPRO)
**************SGDF********************IQE***********************************************DDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAG*******************************************************************************************************FRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL********************************************************T*D************************************************HASMVETVTAAITSDPNFTAALAAAISTIIGS*********************QSC******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKQQQRRELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPKLDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGNNGNNGTSGKQPGSPQLPQSCTTFSTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	501	2.2.26 [Sep-21-2011]
Q9ZSI7	489	Probable WRKY transcripti	yes	no	0.862	0.883	0.446	1e-92
Q9XEC3	528	Probable WRKY transcripti	no	no	0.868	0.823	0.415	2e-80
Q9C519	553	WRKY transcription factor	no	no	0.816	0.739	0.423	7e-76
Q93WT0	538	Probable WRKY transcripti	no	no	0.706	0.657	0.452	8e-67
Q9LXG8	548	Probable WRKY transcripti	no	no	0.712	0.651	0.358	6e-49
Q9C9F0	374	Probable WRKY transcripti	no	no	0.217	0.291	0.672	6e-41
Q8VWV6	480	Probable WRKY transcripti	no	no	0.287	0.3	0.572	4e-37
Q9CAR4	387	Probable WRKY transcripti	no	no	0.596	0.772	0.362	4e-36
Q9SAH7	302	Probable WRKY transcripti	no	no	0.491	0.814	0.312	1e-26
Q8S8P5	519	Probable WRKY transcripti	no	no	0.155	0.150	0.544	6e-22

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  340 bits (873), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 248/555 (44%), Positives = 315/555 (56%), Gaps = 123/555 (22%)

Query: 2   EKQQQRRELALLHSGDFLRRNSD---HRMMENSINRD-KPPIQEMDFFSSNNNQLHDQER 57
           E  Q RRE+A LHSG+FL  +SD   H+  E+ + R  +  I+E+DFF++ +        
Sbjct: 3   EHIQDRREIAFLHSGEFLHGDSDSKDHQPNESPVERHHESSIKEVDFFAAKSQPF--DLG 60

Query: 58  KIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEENRKLRNML 117
            + ++T+V  SG N GL L  SC G S    DDK+ T++S LK EL+RLHEEN KL+++L
Sbjct: 61  HVRTTTIVGSSGFNDGLGLVNSCHGTSSNDGDDKTKTQISRLKLELERLHEENHKLKHLL 120

Query: 118 DQTTKSYNDLQSQLLLAMQKLAHG--SPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAA 175
           D+ ++SYNDLQ ++LLA Q    G    Q +   +AG+                   S A
Sbjct: 121 DEVSESYNDLQRRVLLARQTQVEGLHHKQHEDVPQAGS-------------------SQA 161

Query: 176 LNVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQSWGS 235
           L    P   + +T      PA T +                 ++  +  DG +  +  GS
Sbjct: 162 LENRRPKDMNHET------PATTLK-----------------RRSPDDVDGRDMHR--GS 196

Query: 236 PKSPKLDHQPKNDEQV-----SEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNP 290
           PK+P++D     + +       ++P+RKARVSVRARS+A  ++DGCQWRKYGQKMAKGNP
Sbjct: 197 PKTPRIDQNKSTNHEEQQNPHDQLPYRKARVSVRARSDATTVNDGCQWRKYGQKMAKGNP 256

Query: 291 CPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAML 350
           CPRAYYRCTMAVGCPVRKQVQRCAED TIL TTYEGNHNHPLPP+ATAMA TTSAAAAML
Sbjct: 257 CPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAML 316

Query: 351 LSGSSTSKDGLT--------SSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFL 402
           LSGSS+S    T        SS F+H+ P+ ST+ATLSASAPFPTITLDLT  P P+   
Sbjct: 317 LSGSSSSNLHQTLSSPSATSSSSFYHNFPYTSTIATLSASAPFPTITLDLTNPPRPL--- 373

Query: 403 RGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRH------------------ASMV 444
                   F         L +YGPAA +PN  Q+   +                    MV
Sbjct: 374 ---QPPPQF---------LSQYGPAAFLPNANQIRSMNNNNQQLLIPNLFGPQAPPREMV 421

Query: 445 ETVTAAITSDPNFTAALAAAISTI------------------IGSNNGNNGNNGTSGKQP 486
           ++V AAI  DPNFTAALAAAIS I                  + + +G + N        
Sbjct: 422 DSVRAAIAMDPNFTAALAAAISNIIGGGNNDNNNNTDINDNKVDAKSGGSSNG------- 474

Query: 487 GSPQLPQSCTTFSTN 501
            SPQLPQSCTTFSTN
Sbjct: 475 DSPQLPQSCTTFSTN 489

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  300 bits (767), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 215/517 (41%), Positives = 293/517 (56%), Gaps = 82/517 (15%)

Query: 2   EKQQQRRELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQER--KI 59
           ++Q QR   A+++  DF R         ++  RD+   +E +  +   +++H +    ++
Sbjct: 20  DEQHQR---AVVNEVDFFR---------SAEKRDRVSREEQNIIADETHRVHVKRENSRV 67

Query: 60  ESSTLVLDSGVNIGLNLHTSCSGISRTANDD---------KSHTELSELKGELQRLHEEN 110
           +         +NIGLNL T+ +G   +  DD         ++  E ++L+ EL++  E+N
Sbjct: 68  DDHDDRSTDHINIGLNLLTANTGSDESMVDDGLSVDMEEKRTKCENAQLREELKKASEDN 127

Query: 111 RKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDP 170
           ++L+ ML QTT ++N LQ QL+  M++                 N    P M+ +QF+D 
Sbjct: 128 QRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLATTENNDNVKNRHEVPEMVPRQFIDL 187

Query: 171 RPSAALNVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAET- 229
            P +     +   S+++T   S SP +  E  S   +         GK+V   E+  ET 
Sbjct: 188 GPHS-----DEVSSEERTTVRSGSPPSLLEKSSSRQN---------GKRVLVREESPETE 233

Query: 230 SQSWGSP-KSPKLDHQPKN----------------DEQVSEVPFRKARVSVRARSEAPLI 272
           S  W +P K PK  H   +                ++  +E   RKARVSVRARSEAP++
Sbjct: 234 SNGWRNPNKVPK--HHASSSICGGNGSENASSKVIEQAAAEATMRKARVSVRARSEAPML 291

Query: 273 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL 332
           SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL
Sbjct: 292 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL 351

Query: 333 PPAATAMANTTSAAAAMLLSGSSTS-KDGLTSSGFFHS---VPFASTMATLSASAPFPTI 388
           PPAA  MA+TT+AAA+MLLSGS+ S +DGL +     +   +P +S+MAT+SASAPFPTI
Sbjct: 352 PPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMATISASAPFPTI 411

Query: 389 TLDLTQSPNP--------MQFLR--GPSSSSTFPLPLHGYPQLLRYGPAAG-----MPNN 433
           TLDLT+SPN         MQF +  G    +   LP H   Q L Y   +      MP+ 
Sbjct: 412 TLDLTESPNGNNPTNNPLMQFSQRSGLVELNQSVLP-HMMGQALYYNQQSKFSGLHMPSQ 470

Query: 434 -MQLGQRHASMVETVTAAITSDPNFTAALAAAISTII 469
            +  G+     V   TAAI S+PNF AALAAAI++II
Sbjct: 471 PLNAGES----VSAATAAIASNPNFAAALAAAITSII 503

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  285 bits (728), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 206/486 (42%), Positives = 277/486 (56%), Gaps = 77/486 (15%)

Query: 41  EMDFFSSNNNQL---HDQERKIESSTLVLDSGVNIGLNLHTSCS----------GISRTA 87
           E+DFFS   +++    D+  +++       + VN GLNL T+ +          G S   
Sbjct: 89  EVDFFSDKKSRVCREDDEGFRVKKEEQDDRTDVNTGLNLRTTGNTKSDESMIDDGESSEM 148

Query: 88  NDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQV 147
            D ++  EL +L+ EL+++  +N+KLR +L Q + SY  LQ  L+  MQ+        Q 
Sbjct: 149 EDKRAKNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQQ------QQ 202

Query: 148 NLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEP---SVSDDKTRELSASPANTAEVISK 204
           N K       P   ++ +QF+D  P+ A+   E    S S+D+TR   +S A        
Sbjct: 203 NNKVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNSSSEDRTRSGGSSAAER------ 256

Query: 205 ELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPKLDHQ-PKNDEQVSEVPFRKARVSV 263
                  ++N  GK++     G E S    S K  K++   P   +Q +E   RKARVSV
Sbjct: 257 -------RSN--GKRL-----GREESPETESNKIQKVNSTTPTTFDQTAEATMRKARVSV 302

Query: 264 RARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITT 323
           RARSEAP+ISDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILITT
Sbjct: 303 RARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITT 362

Query: 324 YEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHS---VPFASTMATLS 380
           YEGNHNHPLPPAA AMA+TT+AAA MLLSGS +S DG+ +     +   +P +++MAT+S
Sbjct: 363 YEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATIS 422

Query: 381 ASAPFPTITLDLTQSP----------------NPMQFLRGPSSS----STFP---LP--- 414
           ASAPFPT+TLDLT SP                N    ++ P       +  P   LP   
Sbjct: 423 ASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVI 482

Query: 415 ---LHGYPQLLRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGS 471
              L+   +      + G P+     Q HA + +T+T A+T+DPNFTAALAA IS++I  
Sbjct: 483 GQALYNQSKFSGLQFSGGSPSTAAFSQSHA-VADTIT-ALTADPNFTAALAAVISSMING 540

Query: 472 NNGNNG 477
            N ++G
Sbjct: 541 TNHHDG 546

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  254 bits (650), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 189/418 (45%), Positives = 249/418 (59%), Gaps = 64/418 (15%)

Query: 24  DHRMMENSINRDKPPIQEMDFFSSNNNQL-------HDQER-----KIESSTLVLDS--- 68
           DHR++          + E+DFFS   +++        D E      K+E S +  +    
Sbjct: 25  DHRVV----------VDEVDFFSEKRDRVSRENINDDDDEGNKVLIKMEGSRVEENDRSR 74

Query: 69  GVNIGLNLHTSCSGISRTANDD---------KSHTELSELKGELQRLHEENRKLRNMLDQ 119
            VNIGLNL T+ +G   +  DD         ++  E ++L+ EL+++  EN++LR+ML Q
Sbjct: 75  DVNIGLNLLTANTGSDESTVDDGLSMDMEDKRAKIENAQLQEELKKMKIENQRLRDMLSQ 134

Query: 120 TTKSYNDLQSQLLLAM-QKLAHGSPQGQV---NLKAGAFNGMPSPLMLAQQFMDPRPSAA 175
            T ++N LQ QL+  M Q+    S Q  +     KA         +M+ +QFMD  PS+ 
Sbjct: 135 ATTNFNALQMQLVAVMRQQEQRNSSQDHLLAQESKAEGRKRQELQIMVPRQFMDLGPSSG 194

Query: 176 LNVNEPSVS-DDKTRELSASPANTAEVISKELDHPLTKNNIPGKQV--SNSEDGAETSQS 232
              +   VS +++T   S SP +  E  +   +         GK++           S +
Sbjct: 195 AAEHGAEVSSEERTTVRSGSPPSLLESSNPREN---------GKRLLGREESSEESESNA 245

Query: 233 WGSP-KSPKLDHQPKN----------DEQVSEVPFRKARVSVRARSEAPLISDGCQWRKY 281
           WG+P K PK +    N          D+  +E   RKARVSVRARSEA +ISDGCQWRKY
Sbjct: 246 WGNPNKVPKHNPSSSNSNGNRNGNVIDQSAAEATMRKARVSVRARSEAAMISDGCQWRKY 305

Query: 282 GQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMAN 341
           GQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILITTYEGNHNHPLPPAATAMA+
Sbjct: 306 GQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMAS 365

Query: 342 TTSAAAAMLLSGSSTSKDGLTSSGFFHS---VPFASTMATLSASAPFPTITLDLTQSP 396
           TT+AAA+MLLSGS +S+DGL +     +   +P +S+MAT+SASAPFPTITLDLT SP
Sbjct: 366 TTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSP 423

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score =  195 bits (496), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 166/463 (35%), Positives = 226/463 (48%), Gaps = 106/463 (22%)

Query: 90  DKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNL 149
           D  H EL   K E+  + EEN KL+ ML++    Y  L+ +    +Q+            
Sbjct: 30  DGDHQELESAKAEMSEVKEENEKLKGMLERIESDYKSLKLRFFDIIQQ------------ 77

Query: 150 KAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSD----DKTREL--------SASPAN 197
                   PS      Q M   P       +P+ +D    D+ REL        S+SP++
Sbjct: 78  -------EPSNTATKNQNMVDHP-------KPTTTDLSSFDQERELVSLSLGRRSSSPSD 123

Query: 198 TA-------EVISKEL--DHPLTK-------NNIPG-----------KQVSNSEDGAETS 230
           +        + IS E+  D  LTK       NN  G           +  S SE+     
Sbjct: 124 SVPKKEEKTDAISAEVNADEELTKAGLTLGINNGNGGEPKEGLSMENRANSGSEEAWAPG 183

Query: 231 QSWGSPKSPKLDHQPKND-EQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGN 289
           +  G   SP        D E   +   ++ARV VRAR + P ++DGCQWRKYGQK+AKGN
Sbjct: 184 KVTGKRSSPAPASGGDADGEAGQQNHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGN 243

Query: 290 PCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAM 349
           PCPRAYYRCT+A GCPVRKQVQRCA+D +ILITTYEG H+H LP +AT MA+TTSAAA+M
Sbjct: 244 PCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMASTTSAAASM 303

Query: 350 LLSGSSTSKDG-LTSSGFFHSVPFASTMATLSA----SAPFPTITLDLT---------QS 395
           LLSGSS+S    +  +  + +  F +   +  +    S   PT+TLDLT          S
Sbjct: 304 LLSGSSSSPAAEMIGNNLYDNSRFNNNNKSFYSPTLHSPLHPTVTLDLTAPQHSSSSSSS 363

Query: 396 PNPMQFLRGPSSSSTFP---------------LPLHGYPQLLRYGPAAGMP---NNMQLG 437
              + F +  +S   FP                     P +   G ++  P   NN+Q G
Sbjct: 364 LLSLNFNKFSNSFQRFPSTSLNFSSTSSTSSNPSTLNLPAIWGNGYSSYTPYPYNNVQFG 423

Query: 438 --------QRHASMVETVTAAITSDPNFTAALAAAISTIIGSN 472
                   Q   S+ ET+T A+TSDP+F + +AAAIST++GSN
Sbjct: 424 TSNLGKTVQNSQSLTETLTKALTSDPSFHSVIAAAISTMVGSN 466

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  169 bits (427), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 87/113 (76%), Gaps = 4/113 (3%)

Query: 257 RKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 316
           RKARVSVRAR E   ++DGCQWRKYGQK AKGNPCPRAYYRCT+A GCPVRKQVQRC ED
Sbjct: 219 RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLED 278

Query: 317 RTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHS 369
            +ILITTYEG HNHPLP  ATAMA+T S +  +LL  S    D L+   ++ +
Sbjct: 279 MSILITTYEGTHNHPLPVGATAMASTASTSPFLLLDSS----DNLSHPSYYQT 327

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 114/159 (71%), Gaps = 15/159 (9%)

Query: 256 FRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAE 315
            +K RVSVR+R E P ++DGCQWRKYGQK+AKGNPCPRAYYRCT+A  CPVRKQVQRC+E
Sbjct: 174 VKKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSE 233

Query: 316 DRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHSVPFAST 375
           D +ILI+TYEG HNHPLP +ATAMA+ TSAAA+MLLSG+S+S          H + F+ +
Sbjct: 234 DMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAAD---LHGLNFSLS 290

Query: 376 MATLS-----------ASAPFPTITLDLTQSPNPMQ-FL 402
              ++           +S+  PT+TLDLT S +  Q FL
Sbjct: 291 GNNITPKPKTHFLQSPSSSGHPTVTLDLTTSSSSQQPFL 329

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR4|WRK36_ARATH Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 172/328 (52%), Gaps = 29/328 (8%)

Query: 87  ANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQ 146
           A  DK   EL   K +++++ EEN KL+ +L     +YN LQ Q+   +     G  QG 
Sbjct: 18  AESDKEE-ELDATKAKVEKVREENEKLKLLLSTILNNYNSLQMQVSKVL-----GQQQGA 71

Query: 147 VNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKTRELSA-SPANTAEVISKE 205
            +++    +             D   S  L  +E  +S  +  ++   S  N  E   K 
Sbjct: 72  SSMELDHIDRQDE-----NNDYDVDISLRLGRSEQKISKKEENKVDKISTKNVEESKDKR 126

Query: 206 ---------LDHPLTKNNIPGKQV--SNSEDGAETSQSWGSPKSPKLDHQPKNDEQVSEV 254
                      +  +K +   +QV  +N+E+   +S+     KS + ++     E+  + 
Sbjct: 127 SALGFGFQIQSYEASKLDDLCRQVKLANAENKCVSSRK--DVKSVRNENHQDVLEEHEQT 184

Query: 255 PFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCA 314
             +K RV V+A  E P I+DGCQWRKYGQK AK NP PRAYYRC+M+  CPVRKQVQRC 
Sbjct: 185 GLKKTRVCVKASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCG 244

Query: 315 EDRT-ILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHSVPFA 373
           E+ T   +TTYEGNH+HPLP  A+ MA  TSAAA++L SGSS+S    ++S  +   PF 
Sbjct: 245 EEETSAFMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSSSSTSASLSYF-FPFH 303

Query: 374 STMATLSASAPFPTITLDLTQSPNPMQF 401
               ++S +   PT+TLDLT+   P Q 
Sbjct: 304 H--FSISTTNSHPTVTLDLTRPNYPNQL 329

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 145/317 (45%), Gaps = 71/317 (22%)

Query: 169 DPRPSAAL--NVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNI--------PGK 218
           DP P++AL   +N  S  + K  E+     +   V+ K+L   + K+NI        P K
Sbjct: 27  DP-PTSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEYVNKSNITERDQISPPKK 85

Query: 219 QVSNS-EDGAETSQSWGSPKSPKLDHQPKNDEQVSEVPFRKARVS-VRARSEAP----LI 272
           + S + ED    +   G  +S   D      ++  E    K +VS V  ++EA     ++
Sbjct: 86  RKSPAREDAFSCAVIGGVSESSSTDQDEYLCKKQREETVVKEKVSRVYYKTEASDTTLVV 145

Query: 273 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL 332
            DG QWRKYGQK+ + NP PRAY++C  A  C V+K+VQR  ED+++L+ TYEG HNHP+
Sbjct: 146 KDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPM 205

Query: 333 PPAATAMANTTSAAAAMLLSGSSTSKDGL---TSSGFFHSVPFASTMATLSASAPFPTIT 389
           P                       S +GL    S G   S P A   A   +S   P  T
Sbjct: 206 P-------------------SQIDSNNGLNRHISHGGSASTPVA---ANRRSSLTVPVTT 243

Query: 390 LDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRHASMVETVTA 449
           +D+ +S      +  P+S   FP                         Q    +VE + +
Sbjct: 244 VDMIESKK----VTSPTSRIDFP-------------------------QVQKLLVEQMAS 274

Query: 450 AITSDPNFTAALAAAIS 466
           ++T DPNFTAALAAA++
Sbjct: 275 SLTKDPNFTAALAAAVT 291

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  105 bits (263), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 1/79 (1%)

Query: 257 RKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 316
           R+ R+ V+  S+  ++ DG +WRKYGQK+ KGNP PR+YY+CT  +GCPVRK V+R + D
Sbjct: 346 REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-TIGCPVRKHVERASHD 404

Query: 317 RTILITTYEGNHNHPLPPA 335
              +ITTYEG HNH +P A
Sbjct: 405 MRAVITTYEGKHNHDVPAA 423

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
410111034	510	WRKY transcription factor 47-2 [Dimocarp	0.964	0.947	0.721	0.0
255548239	498	WRKY transcription factor, putative [Ric	0.958	0.963	0.633	1e-167
118489477	502	unknown [Populus trichocarpa x Populus d	0.956	0.954	0.644	1e-156
224128141	502	predicted protein [Populus trichocarpa]	0.956	0.954	0.633	1e-152
225437767	506	PREDICTED: probable WRKY transcription f	0.950	0.940	0.608	1e-152
224068719	506	predicted protein [Populus trichocarpa]	0.962	0.952	0.610	1e-150
297744083	479	unnamed protein product [Vitis vinifera]	0.904	0.945	0.593	1e-145
147859765	968	hypothetical protein VITISV_035325 [Viti	0.922	0.477	0.574	1e-142
356571027	492	PREDICTED: probable WRKY transcription f	0.874	0.890	0.501	1e-116
356505687	541	PREDICTED: probable WRKY transcription f	0.920	0.852	0.534	1e-114

>gi|410111034|gb|AEO31517.2| WRKY transcription factor 47-2 [Dimocarpus longan]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/510 (72%), Positives = 412/510 (80%), Gaps = 27/510 (5%)

Query: 9   ELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLDS 68
           EL  LHSGDFLRRNSD R +ENSI+ D  PI+EMDFFS   + L +Q+RK ESSTL LDS
Sbjct: 11  ELTFLHSGDFLRRNSD-RGIENSIDCDTTPIKEMDFFSRTKHSL-EQDRKNESSTL-LDS 67

Query: 69  GVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQ 128
           GVN GLNL TS  G+S+T NDDKS++E S+L+ EL++LH+E+RKLR+MLDQ ++SYN+LQ
Sbjct: 68  GVNTGLNLLTSSCGVSKTKNDDKSNSETSKLQVELEKLHDESRKLRSMLDQISRSYNELQ 127

Query: 129 SQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKT 188
            QL+LAMQK AHGSPQ Q        N M S  M AQQFMDPRPS  LNVNEPSVSD++ 
Sbjct: 128 GQLVLAMQKQAHGSPQEQ----KSELNRMSSSKMSAQQFMDPRPSGGLNVNEPSVSDERA 183

Query: 189 RELSASPANTA-EVISKELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPKLDHQPKN 247
            ELS SPANT  EVISKE DHP+ +   P +QVSN + G +TSQSWGSP+SPK+D   KN
Sbjct: 184 NELSVSPANTNNEVISKERDHPMLQI-APCRQVSNEDGGDQTSQSWGSPRSPKVDKM-KN 241

Query: 248 DEQ-VSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPV 306
           +EQ   +VP+RKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPV
Sbjct: 242 EEQGPDQVPYRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPV 301

Query: 307 RKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGF 366
           RKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAA+MLLSGS+TSKD LTSSGF
Sbjct: 302 RKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAASMLLSGSTTSKDTLTSSGF 361

Query: 367 FHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLR--- 423
           FHS+P+ASTMATLSASAPFPTITLDLT +PNPMQFLR P   +TFPLPLHG P  LR   
Sbjct: 362 FHSMPYASTMATLSASAPFPTITLDLTHNPNPMQFLRAPHQPATFPLPLHGCPPHLRHPM 421

Query: 424 YGPAA--GMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGNNGNNGT 481
           Y P     MP N+QLGQRHASMVETVTAAI SDPNFTAALAAAIS+IIG+   N G+N +
Sbjct: 422 YAPPKLPAMP-NVQLGQRHASMVETVTAAIASDPNFTAALAAAISSIIGTPRTNEGDNNS 480

Query: 482 SGKQ----------PGSPQLPQSCTTFSTN 501
            G            PGSPQLPQSCTTFSTN
Sbjct: 481 GGTNTVAINGVVGLPGSPQLPQSCTTFSTN 510

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548239|ref|XP_002515176.1| WRKY transcription factor, putative [Ricinus communis] gi|223545656|gb|EEF47160.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 323/510 (63%), Positives = 391/510 (76%), Gaps = 30/510 (5%)

Query: 8   RELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLD 67
           +EL   +S D LR++SD  + ENS+ R K  I+E+DFFS++ N   + +    SS +++D
Sbjct: 3   KELTFFNSSDLLRQSSDQ-LTENSMPRGKSIIKEVDFFSADRNCDQEMKDASSSSAVLVD 61

Query: 68  SGVNIGLNLHTSCSGISRTANDDKSHT-ELSELKGELQRLHEENRKLRNMLDQTTKSYND 126
            G+N GL+L T  SGIS TAN +K +  E+ +L+ EL+RLH+EN+KLR+MLDQ TKSY +
Sbjct: 62  FGLNTGLDLLTPSSGISETANGNKPNIREMRKLQAELERLHDENKKLRSMLDQITKSYKE 121

Query: 127 LQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNE-PSVSD 185
           LQ+QLL+AMQK  HG+ +G+   + G  NG  S +M AQQF+DPRPSAAL VN+ PSVS+
Sbjct: 122 LQAQLLVAMQKQPHGN-RGE---QKGEMNGKTSRIMSAQQFLDPRPSAALEVNDNPSVSE 177

Query: 186 DKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAE-TSQSWGSPKSPKLDHQ 244
           DK +++S SP NT    ++ +    ++ N   KQ   +EDG + TSQSWGSPKS +L+ +
Sbjct: 178 DKAQDVSVSPINTTTTTTEAM----SQINAGNKQ-DCTEDGLDQTSQSWGSPKSARLEQE 232

Query: 245 PKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGC 304
             N +++ EVPFRKARVSVRARSEAPLI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GC
Sbjct: 233 --NKDRIPEVPFRKARVSVRARSEAPLITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGC 290

Query: 305 PVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTS- 363
           PVRKQVQRCAED+TIL TTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSK+GL S 
Sbjct: 291 PVRKQVQRCAEDKTILTTTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKEGLPSN 350

Query: 364 SGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLR 423
           S FF S+P+ASTMATLSASAPFPTITLDLTQSPN M FLR  + S+TFPLPL G PQLL 
Sbjct: 351 STFFPSLPYASTMATLSASAPFPTITLDLTQSPNSMSFLRA-NPSTTFPLPLQGCPQLLG 409

Query: 424 YG-------PAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGNN 476
           +        P   +P ++QLGQRHASMVETVTAAI SDPNFTAALAAAISTIIG+    N
Sbjct: 410 HPLYVPPKLPTVAIP-SLQLGQRHASMVETVTAAIASDPNFTAALAAAISTIIGTQRSTN 468

Query: 477 GNNGTSGKQ-----PGSPQLPQSCTTFSTN 501
            ++ T+        PGSPQLPQSCTTFSTN
Sbjct: 469 RSSNTNTPDGLPGLPGSPQLPQSCTTFSTN 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489477|gb|ABK96541.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 334/518 (64%), Positives = 389/518 (75%), Gaps = 39/518 (7%)

Query: 5   QQRRELALLHSGDFLRRN---SDHRMMENSINRDKPPIQEMDFFSSNNNQL---HDQERK 58
           +Q REL   HSGDFLR+N   SDH   ++S +  KP I+E+DFFSS+        DQE+K
Sbjct: 3   KQGRELVFFHSGDFLRQNPGVSDH-TNDSSSDHTKPIIKEVDFFSSDRTSELPGTDQEKK 61

Query: 59  IES--STLVLDSGVNIGLNLHTSCSGISRTAN-DDKSHTELSELKGELQRLHEENRKLRN 115
           I +  S+ ++DS +N GLNL TS SGIS  AN  +  + ELS L+GEL+RLH+EN+KLR+
Sbjct: 62  IGTIGSSSLVDSSINTGLNLLTSSSGISIIANVKNTDNNELSGLQGELERLHDENKKLRS 121

Query: 116 MLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRP--S 173
           +LDQ TKSY DLQ+QL++A QK      QG    + G  N  P  +M AQ  MDPRP  S
Sbjct: 122 LLDQITKSYRDLQAQLIMATQKQT----QGNRIEQKGELNDTPGSIMSAQHLMDPRPRPS 177

Query: 174 AALNVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQSW 233
             L+VN+PSVSDDKT+E+  S  NT            TK+ + GK+ S  +   +TSQSW
Sbjct: 178 VTLDVNDPSVSDDKTQEVLVSSTNTVG----------TKSQMLGKRASIEDGLDQTSQSW 227

Query: 234 GSPKSPKLDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPR 293
           GSPKSPKL+H+ K DEQ  EVPFRKARVSVRARS+APLISDGCQWRKYGQKMAKGNPCPR
Sbjct: 228 GSPKSPKLEHE-KPDEQTPEVPFRKARVSVRARSDAPLISDGCQWRKYGQKMAKGNPCPR 286

Query: 294 AYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSG 353
           AYYRCTMAVGCPVRKQVQRCAED+TILITTYEGNHNHPLPPAATAMA+TTSAAAAMLLSG
Sbjct: 287 AYYRCTMAVGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAATAMASTTSAAAAMLLSG 346

Query: 354 SSTSKDGL-TSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPN-PMQFLRGPSSSSTF 411
           S+TSK+GL +SS F+ S P+ASTMATLSASAPFPTITLDLTQ PN  M F R   S +TF
Sbjct: 347 STTSKEGLSSSSSFYPSFPYASTMATLSASAPFPTITLDLTQGPNTTMPFHRTSPSPATF 406

Query: 412 PLPLHGYPQLLRYGPAAGMPN-----NMQLGQRHASMVETVTAAITSDPNFTAALAAAIS 466
           PLPLHG+PQLL + P    P      ++QLGQRHASMVETVTAAI SDPNFTAALAAAIS
Sbjct: 407 PLPLHGFPQLLGH-PMYASPKLPAIPSVQLGQRHASMVETVTAAIASDPNFTAALAAAIS 465

Query: 467 TIIG---SNNGNNGNNGTSGKQPGSPQLPQSCTTFSTN 501
           T +G   S++G N +N  SG  PGSPQLPQSCTTFSTN
Sbjct: 466 TFMGTPRSSDGTNNHNAPSGI-PGSPQLPQSCTTFSTN 502

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128141|ref|XP_002320254.1| predicted protein [Populus trichocarpa] gi|222861027|gb|EEE98569.1| predicted protein [Populus trichocarpa]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 328/518 (63%), Positives = 386/518 (74%), Gaps = 39/518 (7%)

Query: 5   QQRRELALLHSGDFLRRN---SDHRMMENSINRDKPPIQEMDFFSSNNNQL---HDQERK 58
           +Q REL   HSGDFLR+N   SDH   ++S +  +   +E+DFFS++        DQE++
Sbjct: 3   KQGRELVFFHSGDFLRQNPGVSDH-TNDSSGDHTRSITKEVDFFSTDRTSELPGTDQEKR 61

Query: 59  IES--STLVLDSGVNIGLNLHTSCSGISRTAN-DDKSHTELSELKGELQRLHEENRKLRN 115
           I +  S+ ++DS +N GLNL TS SGIS  AN  +  + ELS L+GEL+RLH+EN+KLR+
Sbjct: 62  ISTIGSSSLVDSSINTGLNLLTSNSGISIIANVKNPDNNELSGLQGELERLHDENKKLRS 121

Query: 116 MLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRP--S 173
           +LDQ TKSY DLQ+QL++A QK      QG    + G  N  P  +M AQ  MDPRP  S
Sbjct: 122 LLDQITKSYRDLQAQLIMATQKQT----QGNRIEQKGELNDTPGSIMSAQHLMDPRPRPS 177

Query: 174 AALNVNEPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQSW 233
             L+VN+PSVSDDKT+E+  S  NT            TK+ + GK+ S  +   +TSQSW
Sbjct: 178 VTLDVNDPSVSDDKTQEVLVSSTNTVG----------TKSQMLGKRASMEDGLDQTSQSW 227

Query: 234 GSPKSPKLDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPR 293
           GS KSPKL+H+ K DEQ  EVPFRKARVSVRARS+APLISDGCQWRKYGQKMAKGNPCPR
Sbjct: 228 GSSKSPKLEHE-KPDEQTPEVPFRKARVSVRARSDAPLISDGCQWRKYGQKMAKGNPCPR 286

Query: 294 AYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSG 353
           AYYRCTMAVGCPVRKQVQRCAED+TILITTYEGNHNHPLPPAATAMA+TTSAAAAMLLSG
Sbjct: 287 AYYRCTMAVGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAATAMASTTSAAAAMLLSG 346

Query: 354 SSTSKDGL-TSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPN-PMQFLRGPSSSSTF 411
           S+TSK+GL +SS F+ S P+ASTMATLSASAPFPTITLDLTQ PN  M F R   S +TF
Sbjct: 347 STTSKEGLSSSSSFYPSFPYASTMATLSASAPFPTITLDLTQGPNTTMPFHRTSPSPATF 406

Query: 412 PLPLHGYPQLLRYGPAAGMPN-----NMQLGQRHASMVETVTAAITSDPNFTAALAAAIS 466
           PLPLHG+PQLL + P    P      ++QLGQRHASMVETVTAAI SDPNFTAALAAAIS
Sbjct: 407 PLPLHGFPQLLGH-PMYASPKLPAIPSVQLGQRHASMVETVTAAIASDPNFTAALAAAIS 465

Query: 467 TIIG---SNNGNNGNNGTSGKQPGSPQLPQSCTTFSTN 501
           T +G   S++G N +N  SG  PGSPQLPQSCTTFSTN
Sbjct: 466 TFMGTPRSSDGANNHNAPSGI-PGSPQLPQSCTTFSTN 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437767|ref|XP_002281194.1| PREDICTED: probable WRKY transcription factor 47-like [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 317/521 (60%), Positives = 367/521 (70%), Gaps = 45/521 (8%)

Query: 7   RRELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNN--NQLHDQERKIESSTL 64
           R E A L S DFLR NS   + E      K PI+EMDFFS NN  NQ ++QE    SST 
Sbjct: 5   RPEFAFLRSDDFLRPNSS--VHETVSTDQKQPIKEMDFFSRNNQHNQPNEQESNRGSSTR 62

Query: 65  V-LDSGVNIGLNLHTSCSGISRTANDD---KSHTELSELKGELQRLHEENRKLRNMLDQT 120
               +GVN GL+L +  +GI R+ ND+   +  TE   L+ EL+R+ +ENRKLR+ML+Q 
Sbjct: 63  TEAAAGVNTGLDLLSLNTGIQRSGNDNLNIRPKTEFDTLQVELERVRDENRKLRSMLEQI 122

Query: 121 TKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNE 180
           TKSY DLQ QLL+AM + A         LK       P      +Q MDPRPS  L++NE
Sbjct: 123 TKSYGDLQGQLLMAMGEAAR--------LKKDDTTCKPG----TRQLMDPRPSGGLDINE 170

Query: 181 PSVSDDKTRELSASPANTAEVISKELDHPLTKNNIP--GKQVSNSEDGAE--TSQSWGSP 236
            SVSD+K +E S SPANT EV+S E +H    + IP  GK+     DG +  ++ SWGSP
Sbjct: 171 ASVSDEKNQEGSVSPANTTEVMSNESEH----HKIPSAGKKTCFG-DGPDQGSTHSWGSP 225

Query: 237 KSPKLDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYY 296
           KSP +    K++EQ SEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYY
Sbjct: 226 KSPTVLDPSKSEEQASEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYY 285

Query: 297 RCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSST 356
           RCTMA GCPVRKQVQRCAED+TILITTYEGNHNHPLPPAATAMAN+TSAAAAMLLSGS+T
Sbjct: 286 RCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAATAMANSTSAAAAMLLSGSNT 345

Query: 357 SKDGLT-SSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPL 415
           SK+ L  S+GFFH +P+ STMA+LSASAPFPTITLDLTQ  NPM F RGP SS++FP PL
Sbjct: 346 SKEALVNSAGFFHPMPYLSTMASLSASAPFPTITLDLTQGTNPMHFHRGPPSSTSFPSPL 405

Query: 416 HGYPQL----LRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGS 471
           H  PQL    L   P   +  + Q+G RH SMVETVTAAITSDPNFTAALAAAISTIIG+
Sbjct: 406 HACPQLIGQPLYAPPKIPVLPSAQMGHRHPSMVETVTAAITSDPNFTAALAAAISTIIGA 465

Query: 472 NNGNNGNNGTSGKQ-----------PGSPQLPQSCTTFSTN 501
              + GN   S  +           PGSPQLPQSCTTFSTN
Sbjct: 466 PRSSYGNTPNSHGENSKPFSGMPALPGSPQLPQSCTTFSTN 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068719|ref|XP_002302808.1| predicted protein [Populus trichocarpa] gi|222844534|gb|EEE82081.1| predicted protein [Populus trichocarpa]

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 317/519 (61%), Positives = 371/519 (71%), Gaps = 37/519 (7%)

Query: 5   QQRRELALLHSGDFLRRN---SDHRMMENSINRDKPPIQEMDFFSSNNNQL---HDQERK 58
           QQ REL  +HSGDFLR+N   SDH    +S +  KP ++E+DFFS++ N       QE K
Sbjct: 3   QQGRELVFMHSGDFLRQNPGVSDHLNDYSSGDHAKPTMKEVDFFSTDRNGKSPSEHQEMK 62

Query: 59  IE-SSTLVLDSGVNIGLNLHTSCSGISRTAN-DDKSHTELSELKGELQRLHEENRKLRNM 116
           I   S+ ++DS +N GLNL TS SGIS  AN  + +  EL  L+GEL R H+EN+KLR++
Sbjct: 63  INIGSSCLVDSSLNTGLNLSTSSSGISIIANAKEPNDNELRVLRGELGRQHDENKKLRSL 122

Query: 117 LDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAAL 176
           LDQ TKSY DLQ+QLL+AMQK   G    +V  K G  N  P+P+M AQ  MDPRPSA L
Sbjct: 123 LDQITKSYKDLQAQLLVAMQKQTQGC---RVEQK-GELNDTPTPVMSAQLLMDPRPSATL 178

Query: 177 NVN-EPSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAE-TSQSWG 234
           + N EPSVS DKT E+  SP NT E          TK+ I GK+ S  +   + TSQS G
Sbjct: 179 DANIEPSVSYDKTHEMLVSPTNTME----------TKSQISGKRASIGDSNIDQTSQSLG 228

Query: 235 SPKSPKLDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRA 294
           SPKSP+L+ + K +EQV EVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRA
Sbjct: 229 SPKSPRLEEE-KPNEQVPEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRA 287

Query: 295 YYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSG- 353
           YYRC+M VGCPVRKQVQRCAED+TILITTYEGNHNHPLPPAAT MANTTSAAA MLLSG 
Sbjct: 288 YYRCSMTVGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAATVMANTTSAAATMLLSGS 347

Query: 354 SSTSKDGLTSSGFFHSVPFASTMATLSASAPFPTITLDLTQSPN-PMQFLRGPSSSSTFP 412
           +S+ +   +SSGF+ S+P+ASTMAT+SASAPFPTITLDLT  PN  M F     S  TFP
Sbjct: 348 TSSRESLSSSSGFYPSLPYASTMATISASAPFPTITLDLTNGPNTTMPFPCTSPSPVTFP 407

Query: 413 LPLHGYPQL----LRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTI 468
            PLHG PQL    +   P      ++QLGQRH SMVETVTAAI SDPNF+AALAAAIST 
Sbjct: 408 FPLHGCPQLPGNPMYVAPKLPAIPSVQLGQRHGSMVETVTAAIASDPNFSAALAAAISTC 467

Query: 469 IGSNNGNNGNNGTSGKQ-----PGSP-QLPQSCTTFSTN 501
           +G+    +G+N  S        PGSP Q+PQSCTTFSTN
Sbjct: 468 MGTPRSRDGSNNLSTPSVIPGLPGSPVQIPQSCTTFSTN 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744083|emb|CBI37053.3| unnamed protein product [Vitis vinifera]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 307/517 (59%), Positives = 351/517 (67%), Gaps = 64/517 (12%)

Query: 7   RRELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSSNN--NQLHDQERKIESSTL 64
           R E A L S DFLR NS   + E      K PI+EMDFFS NN  NQ ++QE    SST 
Sbjct: 5   RPEFAFLRSDDFLRPNSS--VHETVSTDQKQPIKEMDFFSRNNQHNQPNEQESNRGSSTR 62

Query: 65  V-LDSGVNIGLNLHTSCSGISRTANDD---KSHTELSELKGELQRLHEENRKLRNMLDQT 120
               +GVN GL+L +  +GI R+ ND+   +  TE   L+ EL+R+ +ENRKLR+ML+Q 
Sbjct: 63  TEAAAGVNTGLDLLSLNTGIQRSGNDNLNIRPKTEFDTLQVELERVRDENRKLRSMLEQI 122

Query: 121 TKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNE 180
           TKSY DLQ QLL+AM + A         LK       P      +Q MDPRPS  L++NE
Sbjct: 123 TKSYGDLQGQLLMAMGEAAR--------LKKDDTTCKPG----TRQLMDPRPSGGLDINE 170

Query: 181 PSVSDDKTRELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPK 240
            SVSD+K +E S SPANT EV+S E +H                            K P 
Sbjct: 171 ASVSDEKNQEGSVSPANTTEVMSNESEH---------------------------HKIPI 203

Query: 241 LDHQPKNDEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTM 300
           LD   K++EQ SEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTM
Sbjct: 204 LDPS-KSEEQASEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTM 262

Query: 301 AVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDG 360
           A GCPVRKQVQRCAED+TILITTYEGNHNHPLPPAATAMAN+TSAAAAMLLSGS+TSK+ 
Sbjct: 263 AAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAATAMANSTSAAAAMLLSGSNTSKEA 322

Query: 361 LT-SSGFFHSVPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYP 419
           L  S+GFFH +P+ STMA+LSASAPFPTITLDLTQ  NPM F RGP SS++FP PLH  P
Sbjct: 323 LVNSAGFFHPMPYLSTMASLSASAPFPTITLDLTQGTNPMHFHRGPPSSTSFPSPLHACP 382

Query: 420 QL----LRYGPAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGN 475
           QL    L   P   +  + Q+G RH SMVETVTAAITSDPNFTAALAAAISTIIG+   +
Sbjct: 383 QLIGQPLYAPPKIPVLPSAQMGHRHPSMVETVTAAITSDPNFTAALAAAISTIIGAPRSS 442

Query: 476 NGNNGTSGKQ-----------PGSPQLPQSCTTFSTN 501
            GN   S  +           PGSPQLPQSCTTFSTN
Sbjct: 443 YGNTPNSHGENSKPFSGMPALPGSPQLPQSCTTFSTN 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859765|emb|CAN83141.1| hypothetical protein VITISV_035325 [Vitis vinifera]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 306/533 (57%), Positives = 363/533 (68%), Gaps = 71/533 (13%)

Query: 7   RRELALLHSGDFLRRNSDHRMMENSINRD-KPPIQEMDFFSSNN--NQLHDQERKIESST 63
           R E A L S DFLR NS    +  +++ D K PI+EMDFFS NN  NQ ++QE    SST
Sbjct: 5   RPEFAFLRSDDFLRPNSS---VHETVSTDQKQPIKEMDFFSRNNQHNQPNEQESNRGSST 61

Query: 64  LV-LDSGVNIGLNLHTSCSGISRTANDD---KSHTELSELKGELQRLHEENRKLRNMLDQ 119
                +GVN GL+L +  +GI R+ ND+   +  TE   L+ EL+R+ +ENRKLR+ML+Q
Sbjct: 62  RTEAAAGVNTGLDLLSLNTGIQRSGNDNLNIRPKTEFDTLQVELERVRDENRKLRSMLEQ 121

Query: 120 TTKSYNDLQSQLLLAMQK----------------------------LAHGSPQG--QVNL 149
            TKSY DLQ QLL+AM +                            LA+  P+   ++NL
Sbjct: 122 ITKSYGDLQGQLLMAMGEAARLKSLDFIEFMSTAIALEDSCGRVLHLAYMQPKRIMKLNL 181

Query: 150 KAGAFNGMPSPLMLAQ---------------QFMDPRPSAALNVNEPSVSDDKTRELSAS 194
            A  FN +   LM ++               Q MDPRPS  L +NE SVSD+K +E S S
Sbjct: 182 VARKFNFIS--LMDSRPFEQKDDTTCKPGTRQLMDPRPSGGLXINEASVSDEKNQEGSVS 239

Query: 195 PANTAEVISKELDHPLTKNNIP--GKQVSNSEDGAE--TSQSWGSPKSPKLDHQPKNDEQ 250
           PANT EV+S E +H    + IP  GK+     DG +  ++ SWGSPKSP +    K++EQ
Sbjct: 240 PANTTEVMSNESEH----HKIPSAGKKTCFG-DGPDQGSTHSWGSPKSPTVXDPSKSEEQ 294

Query: 251 VSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQV 310
            SEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQV
Sbjct: 295 ASEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQV 354

Query: 311 QRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLT-SSGFFHS 369
           QRCAED+TILITTYEGNHNHPLPPAATAMAN+TSAAAAMLLSGS+TSK+ L  S+GFFH 
Sbjct: 355 QRCAEDKTILITTYEGNHNHPLPPAATAMANSTSAAAAMLLSGSNTSKEALVNSAGFFHP 414

Query: 370 VPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQL----LRYG 425
           +P+ STMA+LSASAPFPTITLDLTQ  NPM F RGP SS++FP PLH  PQL    L   
Sbjct: 415 MPYLSTMASLSASAPFPTITLDLTQGTNPMHFHRGPPSSTSFPSPLHACPQLIGQPLYAP 474

Query: 426 PAAGMPNNMQLGQRHASMVETVTAAITSDPNFTAALAAAISTIIGSNNGNNGN 478
           P   +  + Q+G RH SMVETVTAAITSDPNFTAALAAAISTIIG+   + GN
Sbjct: 475 PKIPVLPSAQMGHRHPSMVETVTAAITSDPNFTAALAAAISTIIGAPRSSYGN 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571027|ref|XP_003553683.1| PREDICTED: probable WRKY transcription factor 42-like [Glycine max]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 267/532 (50%), Positives = 332/532 (62%), Gaps = 94/532 (17%)

Query: 22  NSDHR----MMENSINRDKPP-IQEMDFFSS-------NNNQLHD-----QERKIESST- 63
           N  HR     + +SI+   PP ++EMDFFS+       NN    D     Q+R  +  T 
Sbjct: 3   NPHHRQLTFFLSHSIDHTDPPSVKEMDFFSTSSAPDHKNNTSTSDTNDDYQKRDDQHDTH 62

Query: 64  -----LVLD------SGVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEENRK 112
                +  D      +  + GLNL  + +G++++ N +   TELS L+ +L +L EEN K
Sbjct: 63  DRHGSITADGSPTRATDHHTGLNLTCASAGMTKSDNSENPETELSSLENQLGKLQEENSK 122

Query: 113 LRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRP 172
           LR++LDQ TK+Y  LQ+QL  A+QK                      P  +  + +DP  
Sbjct: 123 LRSVLDQITKNYAQLQAQLFNALQK-------------------QKLPKNVETKIVDPGA 163

Query: 173 SAALNV-NEPSVSDDKT-RELSASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETS 230
           S  L+V N  SVSD+KT +++S   +N AE      +  L +++      S         
Sbjct: 164 STKLDVVNNASVSDEKTDQDVSVYRSNNAEACPDAAEDVLDRSSSQSWGSS--------- 214

Query: 231 QSWGSPKSPKLDHQPKNDEQV--SEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKG 288
                    KL+ QPK  EQ+   ++P RKARVSVRARSEAP+ISDGCQWRKYGQKMAKG
Sbjct: 215 ---------KLEEQPKTAEQLPAEQIPLRKARVSVRARSEAPMISDGCQWRKYGQKMAKG 265

Query: 289 NPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAATAMANTTSAAAA 348
           NPCPRAYYRCTMAVGCPVRKQVQRCA+D+ +LITTYEGNHNHPLPPAATAMANTTSAAAA
Sbjct: 266 NPCPRAYYRCTMAVGCPVRKQVQRCADDKAVLITTYEGNHNHPLPPAATAMANTTSAAAA 325

Query: 349 MLLSGSST-SKDGLTSSGFFH---SVPFASTMATLSASAPFPTITLDLTQSP-NPMQFLR 403
           MLLSGS+  SK+ LT+S  ++   S+P+AS MATLSASAPFPTITLDLTQ+P N MQ  R
Sbjct: 326 MLLSGSAAPSKEALTNSAGYYSSSSIPYAS-MATLSASAPFPTITLDLTQNPNNAMQLHR 384

Query: 404 GPSS-SSTFPLPLH---------GYPQLL--RYGPAAGMPNNMQLGQRH--ASMVETVTA 449
            P+   +TFPLPLH         G+P     +  PAA MP    L QR   +SMVETV+A
Sbjct: 385 VPAGHGATFPLPLHAAAAGPHLLGHPLFFQQKLPPAALMP----LLQRQPSSSMVETVSA 440

Query: 450 AITSDPNFTAALAAAISTIIGSNNGNNGNNGTSGKQPGSPQLPQSCTTFSTN 501
           AI SDPNFTAAL AAIS+IIG    ++ NN  +G  PGSPQLPQSCTTFSTN
Sbjct: 441 AIASDPNFTAALMAAISSIIGVPRSSDDNNNGNGAIPGSPQLPQSCTTFSTN 492

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505687|ref|XP_003521621.1| PREDICTED: probable WRKY transcription factor 42-like [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 297/556 (53%), Positives = 348/556 (62%), Gaps = 95/556 (17%)

Query: 1   MEKQQQRRELALLHSGDFLRRNSDHRMMENSINRDKPPIQEMDFFSS------------- 47
           M+ +   RE   L S  FL    DH         D P I+EMDFFS+             
Sbjct: 26  MDNRHHHREFTFLSSAHFL----DHI--------DPPSIKEMDFFSTSSPRDHKNNTSSR 73

Query: 48  --------NNNQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTELSEL 99
                   N +  HD   +  S T V+D  VN GLNL  + +G+++  N +   TELS L
Sbjct: 74  DTNDDHYQNRDDQHDTHDRHGSPTRVIDHRVNTGLNLTCASAGVTKAENGENPETELSSL 133

Query: 100 KGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPS 159
           + EL RL EEN KLRN+LD  TKSY  LQ+QL +A+Q L                     
Sbjct: 134 ESELLRLQEENNKLRNVLDHITKSYTQLQAQLFIALQNL--------------------- 172

Query: 160 PLMLAQQFMDPRPSAALNV-NEPSVSDDKT-RELSASPANTAEVISKELDHP---LTKNN 214
           P  +  + +DP  S  L+V N+ SVSD+KT +++S S +N AEV+SK  DH    LTK  
Sbjct: 173 PQNMETKIVDPGTSRKLDVVNDASVSDEKTDQDVSVSRSNNAEVMSKTHDHDDPQLTKLL 232

Query: 215 IPGKQVSNSEDGAET---SQSWGSPKSPKLDHQPKND-EQV--SEVPFRKARVSVRARSE 268
             GKQ     D AE      S  S  S KL+ QPK   EQ+   ++P RKARVSVRARSE
Sbjct: 233 NLGKQAC--PDAAEDVLDRSSSQSWGSSKLEEQPKTTAEQLPADQIPLRKARVSVRARSE 290

Query: 269 APLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNH 328
           AP+ISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQR A+D+T+LIT+YEGNH
Sbjct: 291 APMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRSADDKTVLITSYEGNH 350

Query: 329 NHPLPPAATAMANTTSAAAAMLLSGSSTSKDGLTSSGFFHS--VPFASTMATLSASAPFP 386
           NHPLPPAATAMANTTSAAAAMLLSGS+ SK+ LT+S  ++S  +P+AS MATLSASAPFP
Sbjct: 351 NHPLPPAATAMANTTSAAAAMLLSGSAASKESLTNSAGYYSSTIPYAS-MATLSASAPFP 409

Query: 387 TITLDLTQSPN--PMQFLRGP--SSSSTFPLPLH----GYPQLLRY---------GPAAG 429
           TITLDLTQ+PN   MQ  R P     +TFPLPLH    G P LL +          P A 
Sbjct: 410 TITLDLTQNPNNAAMQLHRVPPGHGGATFPLPLHAAASGGPHLLGHPLFFQQKLLPPQAL 469

Query: 430 MPNNMQLGQRH-ASMVETVTAAITSDPNFTAALAAAISTIIG---SNNGNNGNNGTSGKQ 485
           MP    L QR  +SMVETV+AAI SDPNFTAALAAAIS+IIG     N  N NN  SG  
Sbjct: 470 MP----LLQRQPSSMVETVSAAIASDPNFTAALAAAISSIIGVPRGGNDGNNNNSGSGAI 525

Query: 486 PGSPQLPQSCTTFSTN 501
           PGSPQLPQSCTTFSTN
Sbjct: 526 PGSPQLPQSCTTFSTN 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
TAIR|locus:2133432	489	WRKY47 [Arabidopsis thaliana (	0.471	0.482	0.480	8.1e-87
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.786	0.732	0.405	2e-71
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.806	0.765	0.402	3.1e-67
TAIR|locus:2018052	553	WRKY6 [Arabidopsis thaliana (t	0.704	0.638	0.406	5.4e-65
TAIR|locus:2199317	374	WRKY9 "WRKY DNA-binding protei	0.153	0.205	0.831	5.8e-40
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.604	0.631	0.351	7.4e-40
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.656	0.600	0.324	2.6e-38
TAIR|locus:2196779	387	WRKY36 "WRKY DNA-binding prote	0.632	0.819	0.328	1e-36
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.127	0.183	0.671	1.2e-28
TAIR|locus:2124874	310	WRKY18 "WRKY DNA-binding prote	0.227	0.367	0.430	2e-26

TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
 Identities = 138/287 (48%), Positives = 170/287 (59%)

Query:   204 KELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPKLDHQPK--NDEQVS---EVPFRK 258
             K+++H      +  ++  +  DG +  +  GSPK+P++D      ++EQ +   ++P+RK
Sbjct:   168 KDMNHETPATTLK-RRSPDDVDGRDMHR--GSPKTPRIDQNKSTNHEEQQNPHDQLPYRK 224

Query:   259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 318
             ARVSVRARS+A  ++DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED T
Sbjct:   225 ARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTT 284

Query:   319 ILITTYEGNHNHPLPPXXXXXXXXXXXXXXXXXXXXXXXK--------DGLTSSGFFHSV 370
             IL TTYEGNHNHPLPP                                   +SS F+H+ 
Sbjct:   285 ILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYHNF 344

Query:   371 PFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLL-RYGPAAG 429
             P+ ST+ATLSASAPFPTITLDLT  P P+Q           P P    PQ L +YGPAA 
Sbjct:   345 PYTSTIATLSASAPFPTITLDLTNPPRPLQ-----------P-P----PQFLSQYGPAAF 388

Query:   430 MPN----------NMQL------GQRHA--SMVETVTAAITSDPNFT 458
             +PN          N QL      G +     MV++V AAI  DPNFT
Sbjct:   389 LPNANQIRSMNNNNQQLLIPNLFGPQAPPREMVDSVRAAIAMDPNFT 435

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
 Identities = 175/432 (40%), Positives = 236/432 (54%)

Query:    17 DFLRRNSDHRMMENSINRDKPPIQEMDFFSSNNNQLHDQERKIESSTLVLDSGVNIGLNL 76
             DF     D    EN  + D    + +     +  + +D+ R +     +L +  N G + 
Sbjct:    34 DFFSEKRDRVSRENINDDDDEGNKVLIKMEGSRVEENDRSRDVNIGLNLLTA--NTGSDE 91

Query:    77 HTSCSGISRTANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAM- 135
              T   G+S    D ++  E ++L+ EL+++  EN++LR+ML Q T ++N LQ QL+  M 
Sbjct:    92 STVDDGLSMDMEDKRAKIENAQLQEELKKMKIENQRLRDMLSQATTNFNALQMQLVAVMR 151

Query:   136 QKLAHGSPQGQV---NLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVS-DDKTREL 191
             Q+    S Q  +     KA         +M+ +QFMD  PS+    +   VS +++T   
Sbjct:   152 QQEQRNSSQDHLLAQESKAEGRKRQELQIMVPRQFMDLGPSSGAAEHGAEVSSEERTTVR 211

Query:   192 SASPANTAEVISKELDHPLTKNNIPGKQVSNSEDGAETSQS--WGSP-KSPKLDHQPKN- 247
             S SP +  E       +P  + N  GK++   E+ +E S+S  WG+P K PK +    N 
Sbjct:   212 SGSPPSLLES-----SNP--REN--GKRLLGREESSEESESNAWGNPNKVPKHNPSSSNS 262

Query:   248 ---------DEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRC 298
                      D+  +E   RKARVSVRARSEA +ISDGCQWRKYGQKMAKGNPCPRAYYRC
Sbjct:   263 NGNRNGNVIDQSAAEATMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRC 322

Query:   299 TMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPXXXXXXXXXXXXXXXXXXXXXXXK 358
             TMA GCPVRKQVQRCAEDR+ILITTYEGNHNHPLPP                       +
Sbjct:   323 TMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQ 382

Query:   359 DGLTSSGFFHS---VPFASTMATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPL 415
             DGL +     +   +P +S+MAT+SASAPFPTITLDLT SPN      G + + T   PL
Sbjct:   383 DGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPN------GNNPNMTTNNPL 436

Query:   416 HGYPQLLRYGPA 427
               + Q   + PA
Sbjct:   437 MQFAQRPGFNPA 448

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 190/472 (40%), Positives = 257/472 (54%)

Query:    34 RDKPPIQEMDFFSSNNNQLH--DQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDD- 90
             RD+   +E +  +   +++H   +  +++         +NIGLNL T+ +G   +  DD 
Sbjct:    40 RDRVSREEQNIIADETHRVHVKRENSRVDDHDDRSTDHINIGLNLLTANTGSDESMVDDG 99

Query:    91 --------KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAM-QKLAH- 140
                     ++  E ++L+ EL++  E+N++L+ ML QTT ++N LQ QL+  M Q+  H 
Sbjct:   100 LSVDMEEKRTKCENAQLREELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHH 159

Query:   141 --GSPQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKTRELSASPANT 198
                + +   N+K    N    P M+ +QF+D  P +    +E S S+++T   S SP + 
Sbjct:   160 HLATTENNDNVK----NRHEVPEMVPRQFIDLGPHS----DEVS-SEERTTVRSGSPPSL 210

Query:   199 AEVISKELDHPLTKNNIPGKQVSNSEDGAET-SQSWGSP-KSPKLDHQPKN--------- 247
              E  S       ++ N  GK+V   E+  ET S  W +P K PK  H   +         
Sbjct:   211 LEKSS-------SRQN--GKRVLVREESPETESNGWRNPNKVPK-HHASSSICGGNGSEN 260

Query:   248 ------DEQVSEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMA 301
                   ++  +E   RKARVSVRARSEAP++SDGCQWRKYGQKMAKGNPCPRAYYRCTMA
Sbjct:   261 ASSKVIEQAAAEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMA 320

Query:   302 VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPXXXXXXXXXXXXXXXXXXXXXXX-KDG 360
             VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP                        +DG
Sbjct:   321 VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDG 380

Query:   361 LTSSGFFHS---VPFASTMATLSASAPFPTITLDLTQSPN---P-----MQFLR--GPSS 407
             L +     +   +P +S+MAT+SASAPFPTITLDLT+SPN   P     MQF +  G   
Sbjct:   381 LMNPTNLLARTILPCSSSMATISASAPFPTITLDLTESPNGNNPTNNPLMQFSQRSGLVE 440

Query:   408 SSTFPLPLHGYPQLLRYGPAAGMPN-NMQLGQRHAS-MVETVTAAITSDPNF 457
              +   LP H   Q L Y   +     +M     +A   V   TAAI S+PNF
Sbjct:   441 LNQSVLP-HMMGQALYYNQQSKFSGLHMPSQPLNAGESVSAATAAIASNPNF 491

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 160/394 (40%), Positives = 217/394 (55%)

Query:    33 NRDKPPIQEMDFFSSNNNQL---HDQERKIESSTLVLDSGVNIGLNLHTSCSGIS-RTAN 88
             + D+    E+DFFS   +++    D+  +++       + VN GLNL T+ +  S  +  
Sbjct:    81 DNDREVPGEVDFFSDKKSRVCREDDEGFRVKKEEQDDRTDVNTGLNLRTTGNTKSDESMI 140

Query:    89 DDKSHTELSE--LKGELQRLHEENRKL----RNMLDQTTKSYNDLQSQLLLAMQKLAHGS 142
             DD   +E+ +   K EL +L +E +K+    + + +  T+  N   S   L M  ++   
Sbjct:   141 DDGESSEMEDKRAKNELVKLQDELKKMTMDNQKLRELLTQVSNSYTS---LQMHLVSLMQ 197

Query:   143 PQGQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEP---SVSDDKTRELSASPANTA 199
              Q Q N K       P   ++ +QF+D  P+ A+   E    S S+D+TR   +S A   
Sbjct:   198 QQQQQNNKVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNSSSEDRTRSGGSSAAER- 256

Query:   200 EVISKELDHPLTKNNIPGKQVSNSEDGAETSQSWGSPKSPKLDHQ-PKNDEQVSEVPFRK 258
                         ++N  GK++   E+  ET     S K  K++   P   +Q +E   RK
Sbjct:   257 ------------RSN--GKRLGR-EESPETE----SNKIQKVNSTTPTTFDQTAEATMRK 297

Query:   259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 318
             ARVSVRARSEAP+ISDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+
Sbjct:   298 ARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRS 357

Query:   319 ILITTYEGNHNHPLPPXXXXXXXXXXXXXXXXXXXXXXXKDGLTSSGFFHS---VPFAST 375
             ILITTYEGNHNHPLPP                        DG+ +     +   +P +++
Sbjct:   358 ILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTS 417

Query:   376 MATLSASAPFPTITLDLTQSPNPMQFLRGPSSSS 409
             MAT+SASAPFPT+TLDLT SP P      PSSS+
Sbjct:   418 MATISASAPFPTVTLDLTHSPPPPNG-SNPSSSA 450

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2199317 WRKY9 "WRKY DNA-binding protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 64/77 (83%), Positives = 68/77 (88%)

Query:   257 RKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 316
             RKARVSVRAR E   ++DGCQWRKYGQK AKGNPCPRAYYRCT+A GCPVRKQVQRC ED
Sbjct:   219 RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLED 278

Query:   317 RTILITTYEGNHNHPLP 333
              +ILITTYEG HNHPLP
Sbjct:   279 MSILITTYEGTHNHPLP 295

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 117/333 (35%), Positives = 160/333 (48%)

Query:    96 LSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL--LAMQKLAHGSPQGQVN--LKA 151
             + E K E +RL     K++   D     YN L ++       Q   H   +G+     K 
Sbjct:     1 MDEAKEENRRLKSSLSKIKKDFDILQTQYNQLMAKHNEPTKFQSKGHHQDKGEDEDREKV 60

Query:   152 GAFNGMPSPLMLAQQFMDPRPSAA----LNVNEPSVSDDKT---RELSASPANTAEVISK 204
                  + S L L ++     PS +     N +      D+     E S+    +  +  K
Sbjct:    61 NEREELVS-LSLGRRLNSEVPSGSNKEEKNKDVEEAEGDRNYDDNEKSSIQGLSMGIEYK 119

Query:   205 ELDHPLTKNNIPGKQ------VSNSEDGAETSQSWGSPKSPKLDHQPKNDEQVSEVPFRK 258
              L +P  K  I   Q      +SN+     +  S+G  K+   DH+ + DE + +   +K
Sbjct:   120 ALSNPNEKLEIDHNQETMSLEISNNNK-IRSQNSFGF-KNDGDDHEDE-DEILPQNLVKK 176

Query:   259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 318
              RVSVR+R E P ++DGCQWRKYGQK+AKGNPCPRAYYRCT+A  CPVRKQVQRC+ED +
Sbjct:   177 TRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMS 236

Query:   319 ILITTYEGNHNHPLPPXXXXXXXXXXXXXXX----XXXXXXXXKD--GLTSSGFFHSV-P 371
             ILI+TYEG HNHPLP                             D  GL  S   +++ P
Sbjct:   237 ILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHGLNFSLSGNNITP 296

Query:   372 FASTMATLS-ASAPFPTITLDLTQSPNPMQ-FL 402
                T    S +S+  PT+TLDLT S +  Q FL
Sbjct:   297 KPKTHFLQSPSSSGHPTVTLDLTTSSSSQQPFL 329

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 119/367 (32%), Positives = 172/367 (46%)

Query:    90 DKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHGSPQGQVNL 149
             D  H EL   K E+  + EEN KL+ ML++    Y  L+ +    +Q+    +     N+
Sbjct:    30 DGDHQELESAKAEMSEVKEENEKLKGMLERIESDYKSLKLRFFDIIQQEPSNTATKNQNM 89

Query:   150 KAGAFNGMPSPLMLAQQFMDPRPSAALNVNE--PSVSDDKTRELSASPANTAEVISKELD 207
                  +  P+   L+  F   R   +L++     S SD   ++   + A +AEV     D
Sbjct:    90 ---VDHPKPTTTDLSS-FDQERELVSLSLGRRSSSPSDSVPKKEEKTDAISAEV---NAD 142

Query:   208 HPLTK-------NNIPG---KQVSNSEDGAETS--QSW------GSPKSPKLDHQPKNDE 249
               LTK       NN  G   K+  + E+ A +   ++W      G   SP        D 
Sbjct:   143 EELTKAGLTLGINNGNGGEPKEGLSMENRANSGSEEAWAPGKVTGKRSSPAPASGGDADG 202

Query:   250 QVSEVPF-RKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRK 308
             +  +    ++ARV VRAR + P ++DGCQWRKYGQK+AKGNPCPRAYYRCT+A GCPVRK
Sbjct:   203 EAGQQNHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRK 262

Query:   309 QVQRCAEDRTILITTYEGNHNHPLPPXXXXXXXXXXXXXXXXXXXXXXXKDG-LTSSGFF 367
             QVQRCA+D +ILITTYEG H+H LP                            +  +  +
Sbjct:   263 QVQRCADDMSILITTYEGTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAEMIGNNLY 322

Query:   368 HSVPFASTMATL---SASAPF-PTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLR 423
              +  F +   +    +  +P  PT+TLDLT    P       SSSS   L  + +    +
Sbjct:   323 DNSRFNNNNKSFYSPTLHSPLHPTVTLDLTA---PQH--SSSSSSSLLSLNFNKFSNSFQ 377

Query:   424 YGPAAGM 430
               P+  +
Sbjct:   378 RFPSTSL 384

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

TAIR|locus:2196779 WRKY36 "WRKY DNA-binding protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 110/335 (32%), Positives = 163/335 (48%)

Query:    87 ANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQL--LLAMQKLAHGSPQ 144
             A  DK   EL   K +++++ EEN KL+ +L     +YN LQ Q+  +L  Q+ A     
Sbjct:    18 AESDKEE-ELDATKAKVEKVREENEKLKLLLSTILNNYNSLQMQVSKVLGQQQGASSMEL 76

Query:   145 GQVNLKAGAFNGMPSPLMLAQQFMDPRPSAALNVNEPSVSDDKTRELSASPANTAEV-IS 203
               ++ +    N     + L     + + S      E  V    T+ +  S    + +   
Sbjct:    77 DHID-RQDENNDYDVDISLRLGRSEQKISKK---EENKVDKISTKNVEESKDKRSALGFG 132

Query:   204 KELD-HPLTKNNIPGKQV--SNSEDGAETSQSWGSPKSPKLDHQPKNDEQVSEVPFRKAR 260
              ++  +  +K +   +QV  +N+E+   +S+     KS + ++     E+  +   +K R
Sbjct:   133 FQIQSYEASKLDDLCRQVKLANAENKCVSSRK--DVKSVRNENHQDVLEEHEQTGLKKTR 190

Query:   261 VSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT-I 319
             V V+A  E P I+DGCQWRKYGQK AK NP PRAYYRC+M+  CPVRKQVQRC E+ T  
Sbjct:   191 VCVKASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSA 250

Query:   320 LITTYEGNHNHPLPPXXXXXXXXXXXXXXXXXXXXXXXKDGLTSSGFFHSVPFASTMATL 379
              +TTYEGNH+HPLP                            TS+   +  PF     ++
Sbjct:   251 FMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSSSS-TSASLSYFFPFHHF--SI 307

Query:   380 SASAPFPTITLDLTQSPNPMQFLRG-PSSSSTFPL 413
             S +   PT+TLDLT+   P Q     P SSS+F L
Sbjct:   308 STTNSHPTVTLDLTRPNYPNQLPDDYPLSSSSFSL 342

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0015698 "inorganic anion transport" evidence=RCA

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 260 (96.6 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 43/64 (67%), Positives = 51/64 (79%)

Query:   271 LISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 330
             ++ DG QWRKYGQK+ K NPCPRAY+RC+ A  CPV+K+VQR AED TIL+ TYEG HNH
Sbjct:   191 VVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSAEDNTILVATYEGEHNH 250

Query:   331 PLPP 334
               PP
Sbjct:   251 GQPP 254

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
 Identities = 53/123 (43%), Positives = 68/123 (55%)

Query:   217 GKQVSNSEDGAETSQSWGSPKSPKLDHQPKNDEQVSEVP----FRKARVSV----RARSE 268
             G  +  S    E S S          H+ KN     + P    F KA+VS        S+
Sbjct:   111 GFPIGLSSGKTENSSSNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSD 170

Query:   269 APL-ISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGN 327
               L + DG QWRKYGQK+ + NP PRAY+RC+ A  CPV+K+VQR AED ++L+ TYEG 
Sbjct:   171 TSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGT 230

Query:   328 HNH 330
             HNH
Sbjct:   231 HNH 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZSI7	WRK47_ARATH	No assigned EC number	0.4468	0.8622	0.8834	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140565 hypothetical protein (503 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	501
smart00774	59	smart00774, WRKY, DNA binding domain	1e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-34

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  126 bits (319), Expect = 1e-35
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 274 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 330
           DG QWRKYGQK+ KG+P PR+YYRCT   GCP +KQVQR  +D +++  TYEG H H
Sbjct: 3   DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  123 bits (311), Expect = 2e-34
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 272 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP 331
           + DG  WRKYGQK  KG+P PR+YYRCT   GCPV+KQV+R ++D  I+  TYEG HNHP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSP-GCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 332 L 332
            
Sbjct: 60  K 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	501
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	94.0
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	89.61
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	86.09
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	80.74

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1.5e-30  Score=206.86  Aligned_cols=60  Identities=65%  Similarity=1.258  Sum_probs=52.2

Q ss_pred             CCCcchhhcccCcccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCC
Q 040711          272 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL  332 (501)
Q Consensus       272 ~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~  332 (501)
                      ++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999995 999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=4.3e-30  Score=203.73  Aligned_cols=59  Identities=59%  Similarity=1.206  Sum_probs=57.3

Q ss_pred             CCCcchhhcccCcccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCC
Q 040711          272 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH  330 (501)
Q Consensus       272 ~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH  330 (501)
                      ++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999789999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=94.00  E-value=0.04  Score=45.83  Aligned_cols=32  Identities=41%  Similarity=0.692  Sum_probs=28.0

Q ss_pred             CCCccccceeeecCCCcEEEEEecccCCCCCCC
Q 040711          302 VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  334 (501)
Q Consensus       302 ~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~p~  334 (501)
                      .+|+|+=.|.+.. |....++.+..+|||++-|
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            6999999998877 7778999999999999854

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.61  E-value=0.14  Score=39.13  Aligned_cols=50  Identities=30%  Similarity=0.583  Sum_probs=25.9

Q ss_pred             CCCCcchhhcccCcccCCCCCCccccccccC--CCCccccceeeecCCCcEEEEEecccCCC
Q 040711          271 LISDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNH  330 (501)
Q Consensus       271 ~~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~--~~CpvrKqVqr~~~D~~i~~~tY~G~HnH  330 (501)
                      ++-|||.-+++...      ....|+||+..  .+|+|+-.+.  .++.  .++...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            56789887765555      34589999985  3799987776  3444  33334499999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=86.09  E-value=2.5  Score=33.71  Aligned_cols=41  Identities=27%  Similarity=0.443  Sum_probs=37.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 040711           91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQL  131 (501)
Q Consensus        91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql  131 (501)
                      +++..+..|+.++..+..||..|+.-+..+...+..|+.+.
T Consensus        23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen   23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            56788999999999999999999999999999999998764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=80.74  E-value=3.2  Score=39.87  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040711           91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQS  129 (501)
Q Consensus        91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQm  129 (501)
                      +-+.|++.|+.+++.+..||++|..=+..|.++|.+|=.
T Consensus       108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~  146 (161)
T TIGR02894       108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID  146 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999998743

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	501
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-18
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-18

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 263 VRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 322
           V+  SE  L+ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 66
Query: 323 TYEGNHNHPLP 333
           TYEG HNH LP
Sbjct: 67  TYEGKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 318
           +R+ V  ++   +++DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59
Query: 319 ILITTYEGNHNHPLPP 334
           +LITTYEG H+H +PP
Sbjct: 60  LLITTYEGKHDHDMPP 75
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	501
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	7e-47
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-45
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  156 bits (396), Expect = 7e-47
 Identities = 39/77 (50%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 318
           +R+ V  ++   +++DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59

Query: 319 ILITTYEGNHNHPLPPA 335
           +LITTYEG H+H +PP 
Sbjct: 60  LLITTYEGKHDHDMPPG 76

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  153 bits (388), Expect = 1e-45
 Identities = 42/77 (54%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 257 RKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 316
                 V+  SE  L+ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATD 60

Query: 317 RTILITTYEGNHNHPLP 333
              ++TTYEG HNH LP
Sbjct: 61  PKAVVTTYEGKHNHDLP 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 54/380 (14%), Positives = 121/380 (31%), Gaps = 94/380 (24%)

Query: 2   EKQQQRRELALLHSGDFLRRNSD---HRM-------MENSINRDKPPIQEMDF--FSSNN 49
           +   + R+ ALL     LR   +     +       +   +        +MDF  F  N 
Sbjct: 135 QPYLKLRQ-ALLE----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 50  NQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEE 109
              +  E        VL+      L      +  SR+ +       +  ++ EL+RL + 
Sbjct: 190 KNCNSPE-------TVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 110 NRKLRNML---D--QTTKSYN--DLQSQLLLAMQKLAHGSPQGQVNLKAGAFNGMPSPLM 162
            +   N L      Q  K++N  +L  ++LL        +   QV     A         
Sbjct: 241 -KPYENCLLVLLNVQNAKAWNAFNLSCKILLT-------TRFKQVTDFLSAAT------- 285

Query: 163 LAQQFMDPRPSAALNVNEPSVSDDKTRELSASPANT-AEVISKELD--HPLTKNNIPGKQ 219
                       +L+ +  +++ D+ + L     +   + + +E+   +P   + I  + 
Sbjct: 286 --------TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AES 336

Query: 220 VSNSEDGAETSQSWGSPKSPKLDH---------QPKNDEQVSE--VPFRK-ARVSVRA-- 265
           +    DG  T  +W      KL           +P    ++ +    F   A +      
Sbjct: 337 IR---DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 266 -------RSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 318
                  +S+  ++ +     KY   + +  P          ++   ++ +++       
Sbjct: 394 LIWFDVIKSDVMVVVNKLH--KYS--LVEKQPKESTIS--IPSIYLELKVKLENEYALHR 447

Query: 319 ILITTYEG----NHNHPLPP 334
            ++  Y      + +  +PP
Sbjct: 448 SIVDHYNIPKTFDSDDLIPP 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	501
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.98
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	90.62
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	81.95
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	80.87
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	80.19
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	80.1

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=3.6e-34  Score=235.95  Aligned_cols=75  Identities=52%  Similarity=1.108  Sum_probs=72.1

Q ss_pred             ccEEEeeCCCCCCCCCcchhhcccCcccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCC
Q 040711          259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  334 (501)
Q Consensus       259 ~rv~v~~~s~~~~~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~p~  334 (501)
                      .||.|++.++..+++|||+|||||||.|||+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            389999999999999999999999999999999999999998 699999999999999999999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.98  E-value=1.2e-33  Score=233.84  Aligned_cols=75  Identities=56%  Similarity=1.058  Sum_probs=68.8

Q ss_pred             ccEEEeeCCCCCCCCCcchhhcccCcccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCC
Q 040711          259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  334 (501)
Q Consensus       259 ~rv~v~~~s~~~~~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~p~  334 (501)
                      .||.|+++++..+++|||+|||||||.|||+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478899999999999999999999999999999999999999 799999999999999999999999999999874

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=90.62  E-value=0.17  Score=41.97  Aligned_cols=28  Identities=25%  Similarity=0.514  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711           94 TELSELKGELQRLHEENRKLRNMLDQTT  121 (501)
Q Consensus        94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~  121 (501)
                      .++..+++||.++++||+.|++|++++.
T Consensus        41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           41 KEIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778899999999999999999999874

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=81.95  E-value=2.5  Score=32.61  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=37.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711           91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL  132 (501)
Q Consensus        91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~  132 (501)
                      +++..+..|+.+.+.+..||..|+.-+..+......|..+|+
T Consensus        19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D           19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            556788999999999999999999999999999998887764

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=80.87  E-value=3.8  Score=31.96  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=36.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711           91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL  132 (501)
Q Consensus        91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~  132 (501)
                      +++..+..|+.+.+.+..||..|+.-+..+..-+..|...|.
T Consensus        20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~   61 (63)
T 2wt7_A           20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566788999999999999999999999988888888876553

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=80.19  E-value=1.6  Score=36.55  Aligned_cols=28  Identities=29%  Similarity=0.585  Sum_probs=23.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711           93 HTELSELKGELQRLHEENRKLRNMLDQT  120 (501)
Q Consensus        93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v  120 (501)
                      ..++..+++|+.++++||++|+.+-+++
T Consensus        44 h~~ie~~~eEi~~Lk~en~~L~elA~~~   71 (83)
T 1wlq_A           44 HKEIEQKDSEIARLRKENKDLAEVAEHV   71 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888889999999999999887765

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=80.10  E-value=1.9  Score=36.02  Aligned_cols=27  Identities=26%  Similarity=0.542  Sum_probs=19.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711           94 TELSELKGELQRLHEENRKLRNMLDQT  120 (501)
Q Consensus        94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v  120 (501)
                      .++..|++|+..+++||++||.+.+++
T Consensus        53 ~~ie~l~eEi~~lk~en~eL~elae~~   79 (83)
T 1uii_A           53 KEIEQKDNEIARLKKENKELAEVAEHV   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777776665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	501
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	9e-35

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (308), Expect = 9e-35
 Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 263 VRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 322
           V+  SE  L+ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 59

Query: 323 TYEGNHNHPLP 333
           TYEG HNH LP
Sbjct: 60  TYEGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	501
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.98

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=5.1e-34  Score=230.02  Aligned_cols=71  Identities=59%  Similarity=1.119  Sum_probs=67.1

Q ss_pred             EeeCCCCCCCCCcchhhcccCcccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCC
Q 040711          263 VRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  334 (501)
Q Consensus       263 v~~~s~~~~~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~p~  334 (501)
                      |++.++.++++|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            46778889999999999999999999999999999998 699999999999999999999999999999773