Citrus Sinensis ID: 040726

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MRNPSTSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNETIALPNTITGSSSDPLVSTAAASTFGLEANWESPIMASSLNQDESRRVDEHVE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHccccccccccccccHHcccccccccHHHHHHHHHHHHHcccccccHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mrnpstspsSTAAAAAAAAtnkstpccskvglkrgpwtpeeDELLANYINKegegrwrtlpkragllrcgkscRLRWmnylrpsvkrghiapdEEDLILRLHRLLGNRwsliagripgrtdneIKNYWNTHLSKKLisqgidprthkplnqeldpssadqvtnsnskasTSKAILnssssnpnltpmtvssghldqrhtsagcgrMISSIMMInkengyspnalvddhdseyhqngmmenpytslsncdhhhdddgglglrsnnvnnvfneglsyevdvdinycnddVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSnetialpntitgsssdplvsTAAASTfgleanwespimasslnqdesrrvdehve
Flexible Loop (DISEMBL)
mrnpstspssTAAAAAAAatnkstpccskvglkrgpwtpeEDELLANyinkegegrwrtlpkragllrcgkscrlrwmnylrpsvkrghiapDEEDLILRLHRLLGNRwsliagripgrtdNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAilnssssnpnLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNETIALPNTITGSSSDPLVSTAAASTFGLeanwespimasslnqdesrrvdehve
Low Complexity Region (SEG)
MRNpstspsstaaaaaaaatNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILnssssnpnLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCdhhhdddgglglRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFAsqhnqqvlqqqqqqhlsnETIALPNTITGSSSDPLVSTAAASTFGLEANWESPIMASSLNQDESRRVDEHVE
Disordered region (IsUnstruct)
**************************CSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLI*********************************************************************I*SIMMI********************************************LGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAF*************************************************************************
Disordered Region (DISOPRED)
**************************CSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQG******************************************************************************************************TS*********************************DVDINYCNDDVFSSFLNSLINEDAFASQ********************************************EANWESPIMASSLNQD**********
Disordered Region (DISEMBL)
************************PCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQE********************AILNSSSSNPNLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQ*************LSNETIALPNTITGSSSDPLVSTAAASTFGLEANWESPIMASS**************
Disordered Region (DISPRO)
***********************TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKP***********************************************************************************YHQNGMMENPYTSLSNCDHHHDDDGGLGLRS**VNNVFNEGLSYEVDVDINYCNDDVFSSFLNSL*************************************S*DPLVSTAAASTFGLEANWESPIMASSLNQ***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNPSTSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNETIALPNTITGSSSDPLVSTAAASTFGLEANWESPIMASSLNQDESRRVDEHVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
Q38850	249	Transcription repressor M	yes	no	0.544	0.819	0.576	8e-67
P81393	232	Myb-related protein 308 O	N/A	no	0.392	0.633	0.610	3e-51
Q9S9K9	257	Transcription factor MYB3	no	no	0.357	0.521	0.644	7e-51
Q9SZP1	282	Transcription repressor M	no	no	0.4	0.531	0.580	1e-50
Q38851	236	Transcription repressor M	no	no	0.413	0.656	0.574	2e-50
P20025	255	Myb-related protein Zm38	N/A	no	0.352	0.517	0.647	8e-50
P81395	274	Myb-related protein 330 O	N/A	no	0.338	0.463	0.661	2e-49
Q8GWP0	360	Transcription factor MYB3	no	no	0.352	0.366	0.646	2e-49
Q9SPG2	366	Transcription factor MYB2	no	no	0.424	0.434	0.552	6e-49
P20026	267	Myb-related protein Hv1 O	N/A	no	0.344	0.483	0.651	1e-48

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  254 bits (649), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 128/222 (57%), Positives = 151/222 (68%), Gaps = 18/222 (8%)

Query: 12  AAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGK 71
           +       + K+TPCC+K+G+KRGPWT EEDE+L ++I KEGEGRWR+LPKRAGLLRCGK
Sbjct: 3   SCGGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGK 62

Query: 72  SCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH 131
           SCRLRWMNYLRPSVKRG I  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH
Sbjct: 63  SCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH 122

Query: 132 LSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSS 191
           L KKL+ QGIDP+THKPL+       A+ +     + S  +           L P  +SS
Sbjct: 123 LRKKLLRQGIDPQTHKPLD-------ANNIHKPEEEVSGGQKY--------PLEP--ISS 165

Query: 192 GHLDQRHTSAGCGRMISSIMMINKENGYSPNALV-DDHDSEY 232
            H D    + G G   +SI +   E+GY       DD  S +
Sbjct: 166 SHTDDTTVNGGDGDSKNSINVFGGEHGYEDFGFCYDDKFSSF 207

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.
Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 117/154 (75%), Gaps = 7/154 (4%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           +PCC K    +G WT EED+ L  YI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 4   SPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
            +KRG+   +E++LI++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KL+S+GIDP
Sbjct: 64  DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDP 123

Query: 144 RTHKPLNQELDPSSADQVT-----NSNSKASTSK 172
            TH+ +N     +S DQVT     N+NSK   +K
Sbjct: 124 TTHRSIND--GTASQDQVTTISFSNANSKEEDTK 155

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  201 bits (511), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           +PCC K  + +G WT EED+LL +YI K GEG WR+LP+ AGL RCGKSCRLRWMNYLRP
Sbjct: 4   SPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRP 63

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
            +KRG+   +E++LI++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KL+S+GIDP
Sbjct: 64  DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDP 123

Query: 144 RTHKPLNQE-LDPSS 157
            +H+ +N+  + PSS
Sbjct: 124 NSHRLINESVVSPSS 138

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 117/155 (75%), Gaps = 5/155 (3%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           +PCC K    +G WT EEDE L  YI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 4   SPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
            +KRG+   +E++LI++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KLI++GIDP
Sbjct: 64  DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDP 123

Query: 144 RTHKPL-----NQELDPSSADQVTNSNSKASTSKA 173
            +H+P+     +Q+  P+  + VT++    S + A
Sbjct: 124 TSHRPIQESSASQDSKPTQLEPVTSNTINISFTSA 158

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 115/162 (70%), Gaps = 7/162 (4%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           +PCC K    +G WT EED+ L +YI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 4   SPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRP 63

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
            +KRG+   DE+ +I++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KL+S GIDP
Sbjct: 64  DLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDP 123

Query: 144 RTHKPLN-------QELDPSSADQVTNSNSKASTSKAILNSS 178
           +TH+ +N       Q + P   D V  S S  +      NSS
Sbjct: 124 QTHRQINESKTVSSQVVVPIQNDAVEYSFSNLAVKPKTENSS 165

Arabidopsis thaliana (taxid: 3702)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  197 bits (502), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 90/139 (64%), Positives = 107/139 (76%), Gaps = 7/139 (5%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           +PCC K    RG WT EEDE L  YI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 4   SPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
            +KRG+   DE+DLI++LH LLGN+WSLIA R+PGRTDNEIKNYWNTH+ +KL+ +GIDP
Sbjct: 64  DLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDP 123

Query: 144 RTHKPLNQELDPSSADQVT 162
            TH+P+       +AD VT
Sbjct: 124 VTHRPI-------AADAVT 135

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 105/127 (82%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           +PCC K    +G WT EED+ L NYI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 4   SPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
            +KRG+   +E+++I++LH LLGN+WSLIAG +PGRTDNEIKNYWNTH+ +KL+S+GIDP
Sbjct: 64  DLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDP 123

Query: 144 RTHKPLN 150
           +TH+ LN
Sbjct: 124 QTHRSLN 130

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 103/133 (77%), Gaps = 1/133 (0%)

Query: 24  TPCCSK-VGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR 82
           +PCC +  G+K+GPW PEED+ L  YIN+ G G WR+LPK AGL RCGKSCRLRWMNYLR
Sbjct: 4   SPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLR 63

Query: 83  PSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGID 142
           P ++RG  +  EE  I+RLH LLGN+WS IAG +PGRTDNEIKNYWNTH+ KKL+  GID
Sbjct: 64  PDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGID 123

Query: 143 PRTHKPLNQELDP 155
           P TH+P   +L P
Sbjct: 124 PVTHEPRTNDLSP 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  195 bits (495), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 115/161 (71%), Gaps = 2/161 (1%)

Query: 25  PCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS 84
           PCC   GLK+G WT EED+ L +YI+  GEG WR +P++AGL RCGKSCRLRW NYL+P 
Sbjct: 5   PCCVGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNYLKPE 64

Query: 85  VKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPR 144
           +KRG  + +EE +I+ LH   GN+WS+IA  +P RTDNEIKNYWNTHL K+L+ QGIDP 
Sbjct: 65  IKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQGIDPV 124

Query: 145 THKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLT 185
           THKPL    +P+  + + + N  AS+S    + SSS P L+
Sbjct: 125 THKPLASSSNPTVDENLNSPN--ASSSDKQYSRSSSMPFLS 163

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 105/129 (81%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           +PCC K    +G WT EED+ L  YI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 4   SPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
            +KRG+ + +E++LI++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KL S+GIDP
Sbjct: 64  DLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDP 123

Query: 144 RTHKPLNQE 152
            TH+ +N +
Sbjct: 124 VTHRAINSD 132

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
224052922	316	predicted protein [Populus trichocarpa]	0.84	0.996	0.563	5e-95
224073156	325	predicted protein [Populus trichocarpa]	0.797	0.92	0.570	5e-92
302398921	357	MYB domain class transcription factor [M	0.912	0.957	0.540	8e-87
66476206	281	PH4 [Petunia x hybrida]	0.650	0.868	0.586	4e-84
359806388	361	uncharacterized protein LOC100782308 [Gl	0.850	0.883	0.483	1e-83
381392353	308	putative MYB transcription factor [Vitis	0.757	0.922	0.529	2e-83
225441587	320	PREDICTED: transcription repressor MYB5	0.672	0.787	0.584	8e-83
45593281	320	Myb transcription factor [Vitis vinifera	0.816	0.956	0.526	1e-82
225435749	312	PREDICTED: transcription repressor MYB5	0.768	0.923	0.521	6e-82
61661400	311	MYB5b [Vitis vinifera]	0.765	0.922	0.521	9e-82

>gi|224052922|ref|XP_002297634.1| predicted protein [Populus trichocarpa] gi|224151966|ref|XP_002337173.1| predicted protein [Populus trichocarpa] gi|222838406|gb|EEE76771.1| predicted protein [Populus trichocarpa] gi|222844892|gb|EEE82439.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 208/369 (56%), Positives = 241/369 (65%), Gaps = 54/369 (14%)

Query: 1   MRNPSTSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTL 60
           MR P+++ ++ +AA       K+TPCC KVGLKRGPWTPEEDELL NYI KEGEGRWRTL
Sbjct: 1   MRKPTSATTAESAA-------KTTPCCIKVGLKRGPWTPEEDELLVNYIKKEGEGRWRTL 53

Query: 61  PKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRT 120
           PK+AGLLRCGKSCRLRWMNYLRPSVKRG IA DEEDLILRLHRLLGNRWSLIAGRIPGRT
Sbjct: 54  PKKAGLLRCGKSCRLRWMNYLRPSVKRGQIADDEEDLILRLHRLLGNRWSLIAGRIPGRT 113

Query: 121 DNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSS 180
           DNEIKNYWNTHLSKKLISQGIDPRTHKPLN    P S DQ   S SKA+  +A L     
Sbjct: 114 DNEIKNYWNTHLSKKLISQGIDPRTHKPLN----PQSFDQSKPSLSKANLHQARLKEPIK 169

Query: 181 NPNLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMM-E 239
           N       VSSG       ++G  R      +IN+EN Y  N +    D +YH +  +  
Sbjct: 170 N------IVSSG---LEEATSGSTR------IINRENEYFQNNINAHLDDQYHADHFIAS 214

Query: 240 NPYTSLSNCDHHHDDDGGLGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINE 299
           + YTSL N    +D   G+ L+ +    +       E D DIN   DDVF SFLNSLINE
Sbjct: 215 HGYTSLLN----YDGTSGMDLKGDQSLGIG------EADQDINSGTDDVF-SFLNSLINE 263

Query: 300 DAFASQHNQQVLQQQQQQHLSNETIALPNTITGSSSDPLVSTAAASTFGLEANWESPIMA 359
           +A         LQQ Q  ++ N   A P      SSDP VS  AA+TFGL   WES +M+
Sbjct: 264 EA---------LQQHQILNVPNVNCAPP------SSDPFVSI-AATTFGLGTGWESTLMS 307

Query: 360 SSLNQDESR 368
           S+ NQ+ES+
Sbjct: 308 SAFNQNESK 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073156|ref|XP_002303999.1| predicted protein [Populus trichocarpa] gi|222841431|gb|EEE78978.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 198/347 (57%), Positives = 232/347 (66%), Gaps = 48/347 (13%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           TPCC KVGLKRGPWTPEEDELLANYI KEGEGRWRTLPK+AGLLRCGKSCRLRWMNYLRP
Sbjct: 25  TPCCIKVGLKRGPWTPEEDELLANYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYLRP 84

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
           SVKRG I+PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP
Sbjct: 85  SVKRGQISPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 144

Query: 144 RTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTSAGC 203
           RTHKPL   ++P S DQ   S+SKA+  +  L          P+ ++S  L++  T++G 
Sbjct: 145 RTHKPL---INPQSFDQSKPSSSKANHLQESLKE--------PIKIASSGLEE--TTSGS 191

Query: 204 GRMISSIMMINKENGYSP-NALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRS 262
             +IS     NKENGY   N+     D  Y  + +    YTSL N    +D   G  LR 
Sbjct: 192 AHIIS-----NKENGYFQNNSNAHLGDQYYTDHFIASRGYTSLLN----YDGSFGTDLRG 242

Query: 263 NNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNE 322
                  N+ L      DIN   +DVF SFLNSLINE+AF            QQ  + NE
Sbjct: 243 -------NQRLGNGEAEDINSGTEDVF-SFLNSLINEEAF------------QQHQIFNE 282

Query: 323 TIALPNTITG-SSSDPLVSTAAASTFGLEANWESPIMASSLNQDESR 368
               PN  +  +S+DPL   AAA++FGL   WES +M S+L+Q++S+
Sbjct: 283 ----PNVNSAPASTDPLFPIAAATSFGLSTGWESTLMPSALDQNDSK 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398921|gb|ADL36755.1| MYB domain class transcription factor [Malus x domestica]

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 207/383 (54%), Positives = 242/383 (63%), Gaps = 41/383 (10%)

Query: 5   STSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA 64
           + SPSS+ A  A  +    TPCC KVGLKRGPWTPEEDELLANYI KEGEGRWRTLPK+A
Sbjct: 3   TASPSSSKAGIAGGS---KTPCCVKVGLKRGPWTPEEDELLANYIKKEGEGRWRTLPKQA 59

Query: 65  GLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEI 124
           GLLRCGKSCRLRWMNYLRPSVKRG IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEI
Sbjct: 60  GLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEI 119

Query: 125 KNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNL 184
           KNYWNTHLSKKLISQGIDPRTHKPLN +   ++AD    + +K++ + A   +++   N 
Sbjct: 120 KNYWNTHLSKKLISQGIDPRTHKPLNPDHHSAAADADVGNTNKSAAAAASSKANNRFSNP 179

Query: 185 TPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHD--SEYHQNGMMENPY 242
            P    S  L  +                   NG   N  +DDHD  +  H      N  
Sbjct: 180 NPSPPPSDRLVHQGADPSI-------------NGNDGNIAIDDHDLGTIVHS---CANMT 223

Query: 243 TSLSNCDHHHDDD--GGLGLRSNNVNN--VFNEGLSYEVDVDINYCNDDVFSSFLNSLIN 298
           TS++N D        G L LR+NN ++  V   G   E D DIN C DDVFSSFLNSLIN
Sbjct: 224 TSINNPDASSSAAAMGTLSLRTNNNSHAGVLLGGGGNEEDEDINCCADDVFSSFLNSLIN 283

Query: 299 EDAFASQHNQQVLQQQQQQHLSNETIALPNTITGSSSDPLV-----STAAASTFGLEANW 353
           ED F+ Q       Q QQQ L N  ++      GS   PL+     ST A STFG    W
Sbjct: 284 EDPFSVQ------HQLQQQVLHNGNVSTHAAGAGSDHVPLISMTSASTMAPSTFG----W 333

Query: 354 ESPI-MASSLNQDESRRVDEHVE 375
           +S + M+S+ NQ++ +RV +  E
Sbjct: 334 DSAVLMSSAFNQNDHQRVTDQTE 356

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|66476206|gb|AAY51377.1| PH4 [Petunia x hybrida]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 169/288 (58%), Positives = 194/288 (67%), Gaps = 44/288 (15%)

Query: 21  NKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY 80
           NK TPCCSKVGLKRGPWTPEEDE+L NYINKEGEGRWRTLPK+AGLLRCGKSCRLRWMNY
Sbjct: 12  NKVTPCCSKVGLKRGPWTPEEDEILTNYINKEGEGRWRTLPKKAGLLRCGKSCRLRWMNY 71

Query: 81  LRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQG 140
           LRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLIS G
Sbjct: 72  LRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISHG 131

Query: 141 IDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTS 200
           IDPRTHKPL      SS+D +TN  + +S   +   ++  NP L+P  +SS  +++    
Sbjct: 132 IDPRTHKPLKNS--NSSSDDITNKLASSSPPSSS-KANDLNPILSPTYISSFQMEE---- 184

Query: 201 AGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGL 260
                    +  IN   G      +   D +Y  N ++             + DD     
Sbjct: 185 --------PLGKINTHPGE-----ITSLDDQYQSNAILA-----------EYGDD----- 215

Query: 261 RSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQ 308
                    N  ++ E DV++N C DDVFSSFLNSLINED FA Q+ Q
Sbjct: 216 --------LNIAVTIEEDVEMNCCTDDVFSSFLNSLINEDMFACQNQQ 255

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806388|ref|NP_001241492.1| uncharacterized protein LOC100782308 [Glycine max] gi|333778349|dbj|BAK24100.1| R2R3 MYB transcription factor [Glycine max]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 199/412 (48%), Positives = 245/412 (59%), Gaps = 93/412 (22%)

Query: 1   MRNPSTSPSSTAAAAAAA------------ATNKSTPCCSKVGLKRGPWTPEEDELLANY 48
           MRNPS    +T                    TN S PCC+ VGLKRGPWTPEEDE+LANY
Sbjct: 1   MRNPSLPTLATTKTKVKNNSNKSTNNNNNIGTNYS-PCCNNVGLKRGPWTPEEDEVLANY 59

Query: 49  INKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNR 108
           INKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNR
Sbjct: 60  INKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNR 119

Query: 109 WSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKA 168
           WSLIAGRIPGRTDNEIKNYWNTHLSKKLI+QGIDPRTHKPLN    PS A   +++ S  
Sbjct: 120 WSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNP---PSIAVPSSSTTSTI 176

Query: 169 STSKAILNSSSSNPNLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDH 228
             SK             P+ +++ +++  H       M +  + +N             H
Sbjct: 177 PPSKP-----------PPVIITNNNINPFHHD--LTNMFNQGVHLN-------------H 210

Query: 229 DSEYHQNGMMENPYTSLSNCDHHH-------DDDGGLGLRSNNVNNVFNEGLSYEVDVDI 281
             ++HQ   + NP      CD+H+       DD   +G   NN  +  N+G      ++I
Sbjct: 211 LGQHHQPPPLSNP------CDNHNPVPAAATDDVSAMGFMDNNNEDCNNDG------INI 258

Query: 282 NYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNETIALPNTITGSSSDPL--- 338
           NY +DDVFSSFLNSLIN+DAF +Q        QQQ H+  E   +P T +  S +PL   
Sbjct: 259 NYYSDDVFSSFLNSLINDDAFEAQ--------QQQHHVQTE---IP-TPSERSINPLPCD 306

Query: 339 ----------VSTAAASTF---GLEANWESPIMASSLNQDE----SRRVDEH 373
                     ++TA+AS      L   WESP+++++ +Q      ++RV +H
Sbjct: 307 DRVDDHHLGSITTASASQGYDDELGVLWESPLVSATFSQHVNDHITKRVHDH 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381392353|gb|AFG28177.1| putative MYB transcription factor [Vitis bellula]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/353 (52%), Positives = 217/353 (61%), Gaps = 69/353 (19%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           TPCC KVGLKRGPWTPEEDE+LANYI K+GEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP
Sbjct: 17  TPCCIKVGLKRGPWTPEEDEVLANYIKKDGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 76

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
           SVKRG IAPDEEDLILRLHRLLGNRW+LIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP
Sbjct: 77  SVKRGQIAPDEEDLILRLHRLLGNRWALIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 136

Query: 144 RTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTSAGC 203
           RTHKPLN    P+S+  V  S+SKA   KA++N    NPN +P                 
Sbjct: 137 RTHKPLN----PNSSVDVKASSSKA---KAVMN---PNPNPSP----------------- 169

Query: 204 GRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRSN 263
               S     NKE G          D++Y       +   ++ N D       G GLRS+
Sbjct: 170 ----SEKAAANKEAGNF------KSDNQYQIGAAGNDGSANIQNSDGS-----GTGLRSS 214

Query: 264 NVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNET 323
           N           E D D+N   DDVFSSFLNSLINED F  QH+ Q              
Sbjct: 215 N----------NEEDDDLNCGTDDVFSSFLNSLINEDVFPGQHHLQQQHHGGL------- 257

Query: 324 IALPNTITGSSSDPLVSTAAASTFGLEANWESPIMASS--LNQ-DESRRVDEH 373
                      S+ L+ST++  +FG   +WE+  M+S+   +Q D S+R ++ 
Sbjct: 258 -------IAPGSNALISTSSVQSFGFGTSWEAAGMSSTSAFSQIDHSKRFNDQ 303

Source: Vitis bellula

Species: Vitis bellula

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441587|ref|XP_002281643.1| PREDICTED: transcription repressor MYB5 [Vitis vinifera]

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 177/303 (58%), Positives = 199/303 (65%), Gaps = 51/303 (16%)

Query: 1   MRNPSTSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTL 60
           MRNP            A+A+   TPCC+KVGLKRGPWTPEEDELLANY+ +EGEGRWRTL
Sbjct: 1   MRNP------------ASASTSKTPCCTKVGLKRGPWTPEEDELLANYVKREGEGRWRTL 48

Query: 61  PKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRT 120
           PKRAGLLRCGKSCRLRWMNYLRPSVKRG IAPDEEDLILRLHRLLGNRWSLIAGRIPGRT
Sbjct: 49  PKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRT 108

Query: 121 DNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSS 180
           DNEIKNYWNTHLSKKLISQGIDPRTHKPLN + +PS        +  A  SK+I N   +
Sbjct: 109 DNEIKNYWNTHLSKKLISQGIDPRTHKPLNPKPNPS-------PDVNAPVSKSIPN---A 158

Query: 181 NPNLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMEN 240
           NPN  P +   G +   H      + I S      EN   P  L      +YH      +
Sbjct: 159 NPN--PSSSRVGEIGSNHEV----KEIES-----NENHKEPPNL-----DQYH------S 196

Query: 241 PYTSLSNCDHHHDDDGGLGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINED 300
           P  + SN +    D    GL+S +       G S + + DI +CNDD FSSFLNSLINED
Sbjct: 197 PLAADSNENWQSADGLVTGLQSTH-------GTSNDDEDDIGFCNDDTFSSFLNSLINED 249

Query: 301 AFA 303
            F 
Sbjct: 250 VFG 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45593281|gb|AAS68190.1| Myb transcription factor [Vitis vinifera]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 190/361 (52%), Positives = 221/361 (61%), Gaps = 55/361 (15%)

Query: 1   MRNPSTSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTL 60
           MRNP            A+A+   TPCC+KVGLKRGPWTPEEDELLANY+ +EGEGRWRTL
Sbjct: 1   MRNP------------ASASTSKTPCCTKVGLKRGPWTPEEDELLANYVKREGEGRWRTL 48

Query: 61  PKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRT 120
           PKRAGLLRCGKSCRLRWMNYLRPSVKRG IAPDEEDLILRLHRLLGNRWSLIAGRIPGRT
Sbjct: 49  PKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRT 108

Query: 121 DNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSS 180
           DNEIKNYWNTHLSKKLISQGIDPRTHKPLN + +PS        +  A  SK+I N   +
Sbjct: 109 DNEIKNYWNTHLSKKLISQGIDPRTHKPLNPKPNPS-------PDVNAPVSKSIPN---A 158

Query: 181 NPNLTPMTVSSGHLDQRHTSAGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMEN 240
           NPN  P +   G +   H      + I S      EN   P  L      +YH      +
Sbjct: 159 NPN--PSSSRVGEIGSNHEV----KEIES-----NENHKEPPNL-----DQYH------S 196

Query: 241 PYTSLSNCDHHHDDDGGLGLRSNNVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINED 300
           P  + SN +    D    GL+S +       G S + + DI +CNDD F SFLNSLINED
Sbjct: 197 PLAADSNENWQSADGLVTGLQSTH-------GTSNDDEDDIGFCNDDTFPSFLNSLINED 249

Query: 301 AFASQHNQQVLQQQQQQHLSNETIALPNTITGSSSDPLVSTAAASTFGLEANWESPIMAS 360
            F + HN    QQQQQ     + +  P+ +      P +S  A  +      WE   + S
Sbjct: 250 VFGN-HNHHQQQQQQQ---QLQQVQQPSNVIAPLPHPAISVQATFSSSPRTVWEPAALTS 305

Query: 361 S 361
           +
Sbjct: 306 T 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435749|ref|XP_002285715.1| PREDICTED: transcription repressor MYB5 [Vitis vinifera]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 184/353 (52%), Positives = 215/353 (60%), Gaps = 65/353 (18%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           TPCC KVGLKRGPWTPEEDE+LANYI KEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP
Sbjct: 17  TPCCIKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 76

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
           SVKRG IAPDEEDLILRLHRLLGNRW+LIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP
Sbjct: 77  SVKRGQIAPDEEDLILRLHRLLGNRWALIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 136

Query: 144 RTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTSAGC 203
           RTHKPLN    P+S+  V  S+SKA   KA++N + +       +  +            
Sbjct: 137 RTHKPLN----PNSSVDVKASSSKA---KAVMNPNPNPNPNPSPSEKAA----------- 178

Query: 204 GRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRSN 263
                     NKE G   +      D++Y       +   ++ N D       G GLRS+
Sbjct: 179 ---------ANKEAGNFKS------DNQYQIGAAGNDGSANIQNSDGS-----GTGLRSS 218

Query: 264 NVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNET 323
           N           E D D+N   DDVFSSFLNSLINED F  QH+ Q              
Sbjct: 219 N----------NEEDDDLNCGTDDVFSSFLNSLINEDLFPGQHHLQQQHHGGL------- 261

Query: 324 IALPNTITGSSSDPLVSTAAASTFGLEANWESPIMASS--LNQ-DESRRVDEH 373
                      SD L+ST++  +FG   +WE+  M S+   +Q D S+R ++ 
Sbjct: 262 -------IAPGSDALISTSSVQSFGFGTSWEAAAMTSTSAFSQIDHSKRFNDQ 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|61661400|gb|AAX51291.1| MYB5b [Vitis vinifera]

 Score =  310 bits (793), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 184/353 (52%), Positives = 214/353 (60%), Gaps = 66/353 (18%)

Query: 24  TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
           TPCC KVGLKRGPWTPEEDE+LANYI KEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP
Sbjct: 17  TPCCIKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 76

Query: 84  SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
           SVKRG IAPDEEDLILRLHRLLGNRW+LIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP
Sbjct: 77  SVKRGQIAPDEEDLILRLHRLLGNRWALIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 136

Query: 144 RTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTSAGC 203
           RTHKPLN     SS+  V  S+SKA   KA++N + +         ++            
Sbjct: 137 RTHKPLNPN---SSSVDVKASSSKA---KAVMNPNPNPNPSPSEKAAA------------ 178

Query: 204 GRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCDHHHDDDGGLGLRSN 263
                     NKE G   +      D++Y       +   ++ N D       G GLRS+
Sbjct: 179 ----------NKEAGNFKS------DNQYQIGAAGNDGSANIQNSDGS-----GTGLRSS 217

Query: 264 NVNNVFNEGLSYEVDVDINYCNDDVFSSFLNSLINEDAFASQHNQQVLQQQQQQHLSNET 323
           N           E D D+N   DDVFSSFLNSLINED F  QH+ Q              
Sbjct: 218 N----------NEEDDDLNCGTDDVFSSFLNSLINEDVFPGQHHLQQQHHGGL------- 260

Query: 324 IALPNTITGSSSDPLVSTAAASTFGLEANWESPIMASS--LNQ-DESRRVDEH 373
                      SD L+ST++  +FG   +WE+  M S+   +Q D S+R ++ 
Sbjct: 261 -------IAPGSDALISTSSVQSFGFGTSWEAAAMTSTSVFSQIDHSKRFNDQ 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2092820	249	MYB5 "myb domain protein 5" [A	0.344	0.518	0.852	1.6e-69
TAIR|locus:2098906	299	MYB17 "myb domain protein 17"	0.336	0.421	0.706	1.9e-51
TAIR|locus:2173562	295	MYB34 "myb domain protein 34"	0.338	0.430	0.629	2.6e-51
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.357	0.521	0.644	4.6e-50
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.36	0.420	0.651	2e-49
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.394	0.627	0.601	2e-49
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.4	0.531	0.580	2.5e-49
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.381	0.408	0.634	4.1e-49
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.341	0.475	0.656	1.4e-48
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.378	0.438	0.620	2.3e-48

TAIR|locus:2092820 MYB5 "myb domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
 Identities = 110/129 (85%), Positives = 121/129 (93%)

Query:    22 KSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81
             K+TPCC+K+G+KRGPWT EEDE+L ++I KEGEGRWR+LPKRAGLLRCGKSCRLRWMNYL
Sbjct:    13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72

Query:    82 RPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGI 141
             RPSVKRG I  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL KKL+ QGI
Sbjct:    73 RPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGI 132

Query:   142 DPRTHKPLN 150
             DP+THKPL+
Sbjct:   133 DPQTHKPLD 141

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0009845 "seed germination" evidence=NAS

GO:0010026 "trichome differentiation" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 89/126 (70%), Positives = 105/126 (83%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             TPCC K+GLK+GPWTPEEDE+L  +I K G G WRTLPK AGLLRCGKSCRLRW NYLRP
Sbjct:     4 TPCCDKIGLKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG    DEE L+++LH +LGNRW+ IA ++PGRTDNEIKN WNTHL K+L+S G+DP
Sbjct:    64 DIKRGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKRLLSMGLDP 123

Query:   144 RTHKPL 149
             RTH+PL
Sbjct:   124 RTHEPL 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048443 "stamen development" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2173562 MYB34 "myb domain protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 80/127 (62%), Positives = 101/127 (79%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             TPCC + G+K+G WTPEED+ L  Y++  GEG WRTLP++AGL RCGKSCRLRW NYLRP
Sbjct:     4 TPCCKEEGIKKGAWTPEEDQKLIAYLHLHGEGGWRTLPEKAGLKRCGKSCRLRWANYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG  +P+E+D I++LH L GN+W+ IA  + GRTDNEIKNYWNT+L K+L  +GID 
Sbjct:    64 DIKRGEFSPEEDDTIIKLHALKGNKWAAIATSLAGRTDNEIKNYWNTNLKKRLKQKGIDA 123

Query:   144 RTHKPLN 150
              THKP+N
Sbjct:   124 ITHKPIN 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009759 "indole glucosinolate biosynthetic process" evidence=IMP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010438 "cellular response to sulfur starvation" evidence=TAS

GO:0002213 "defense response to insect" evidence=IMP

GO:0016301 "kinase activity" evidence=TAS

GO:0000162 "tryptophan biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 87/135 (64%), Positives = 112/135 (82%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             +PCC K  + +G WT EED+LL +YI K GEG WR+LP+ AGL RCGKSCRLRWMNYLRP
Sbjct:     4 SPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG+   +E++LI++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KL+S+GIDP
Sbjct:    64 DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDP 123

Query:   144 RTHKPLNQEL-DPSS 157
              +H+ +N+ +  PSS
Sbjct:   124 NSHRLINESVVSPSS 138

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 88/135 (65%), Positives = 104/135 (77%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             +PCC + GLK+GPWTPEED+ L N+I K G G WR LPK+AGL RCGKSCRLRW NYLRP
Sbjct:     4 SPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG+   +EE  I+ LH LLGN+WS IAG +PGRTDNEIKNYWNTH+ KKLI  GIDP
Sbjct:    64 DIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMGIDP 123

Query:   144 RTHKPLNQELDPSSA 158
              TH+P    L+  +A
Sbjct:   124 VTHRPRTDHLNVLAA 138

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 89/148 (60%), Positives = 110/148 (74%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             +PCC K    +G WT EED+ L +YI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct:     4 SPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG+   DE+ +I++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KL+S GIDP
Sbjct:    64 DLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDP 123

Query:   144 RTHKPLNQELDPSSADQVTNSNSKASTS 171
             +TH+ +N+    SS   V   N     S
Sbjct:   124 QTHRQINESKTVSSQVVVPIQNDAVEYS 151

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 90/155 (58%), Positives = 117/155 (75%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             +PCC K    +G WT EEDE L  YI   GEG WR+LPK AGLLRCGKSCRLRW+NYLRP
Sbjct:     4 SPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG+   +E++LI++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+ +KLI++GIDP
Sbjct:    64 DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDP 123

Query:   144 RTHKPL-----NQELDPSSADQVTNSNSKASTSKA 173
              +H+P+     +Q+  P+  + VT++    S + A
Sbjct:   124 TSHRPIQESSASQDSKPTQLEPVTSNTINISFTSA 158

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 92/145 (63%), Positives = 109/145 (75%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             +PCC K GLK+GPWT EED+ L +YI K G G WRTLPK AGL RCGKSCRLRW NYLRP
Sbjct:     4 SPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG  + +EE+ I++LH  LGN+WS IA R+PGRTDNEIKN+WNTH+ KKL+  GIDP
Sbjct:    64 DIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMGIDP 123

Query:   144 RTHKPLNQELDPSS--ADQVTNSNS 166
              TH P    LD SS  A  + NS+S
Sbjct:   124 VTHSPRLDLLDISSILASSLYNSSS 148

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 84/128 (65%), Positives = 106/128 (82%)

Query:    24 TPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
             +PCC K  + +G WT EEDE L +YI   GEG WR+LP+ AGLLRCGKSCRLRW+NYLRP
Sbjct:     4 SPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINYLRP 63

Query:    84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDP 143
              +KRG+   DE++LI++LH LLGN+WSLIA R+PGRTDNEIKNYWNTH+ +KL+S+GIDP
Sbjct:    64 DLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKGIDP 123

Query:   144 RTHKPLNQ 151
              TH+ +N+
Sbjct:   124 ATHRGINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 90/145 (62%), Positives = 110/145 (75%)

Query:    24 TPCCSKV-GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR 82
             +PCC K  GLK+GPWTPEED+ L +YIN  G G WRTLPK AGL RCGKSCRLRW NYLR
Sbjct:     4 SPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR 63

Query:    83 PSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGID 142
             P +KRG  + +EE+ I++LH ++GN+WS IA R+PGRTDNEIKNYWNTH+ K+L+  GID
Sbjct:    64 PDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLKMGID 123

Query:   143 PRTHKPLNQELDPSS--ADQVTNSN 165
             P TH P    LD SS  +  + NS+
Sbjct:   124 PVTHTPRLDLLDISSILSSSIYNSS 148

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MybCs1	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (320 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	ban	SubName- Full=Putative anthocyanidin reductase (Chromosome undetermined scaffold_1029, whole ge [...] (338 aa)							•		0.480

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	375
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-81
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-53
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	8e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	7e-12
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	3e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	6e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	8e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	8e-07
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-05
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	4e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.003

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  248 bits (635), Expect = 2e-81
 Identities = 124/200 (62%), Positives = 146/200 (73%), Gaps = 17/200 (8%)

Query: 20  TNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMN 79
           + K+TPCC+K+G+KRGPWT EEDE+L ++I KEGEGRWR+LPKRAGLLRCGKSCRLRWMN
Sbjct: 11  SKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMN 70

Query: 80  YLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQ 139
           YLRPSVKRG I  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL KKL+ Q
Sbjct: 71  YLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130

Query: 140 GIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHT 199
           GIDP+THKPL+       A+ +     + S  +           + P  +SS H D    
Sbjct: 131 GIDPQTHKPLD-------ANNIHKPEEEVSGGQKY--------PIEP--ISSSHTDDTTV 173

Query: 200 SAGCGRMISSIMMINKENGY 219
           + G G   +SI +   E+GY
Sbjct: 174 NGGDGDSKNSINVFGGEHGY 193

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  182 bits (464), Expect = 2e-53
 Identities = 92/204 (45%), Positives = 125/204 (61%), Gaps = 5/204 (2%)

Query: 26  CCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSV 85
           CC K  L++G W+PEEDE L  +I K G G W ++PK+AGL RCGKSCRLRW+NYLRP +
Sbjct: 6   CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDL 65

Query: 86  KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRT 145
           KRG  +  EE+LI+ LH +LGNRWS IA ++PGRTDNEIKN WN+ L KKL  +GIDP T
Sbjct: 66  KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNT 125

Query: 146 HKPLN-----QELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHTS 200
           HKPL+     ++ +P + D+   ++S  S    +L + +S P        S  +      
Sbjct: 126 HKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRSSSISPAGYQ 185

Query: 201 AGCGRMISSIMMINKENGYSPNAL 224
                  SS +  +  N +S + L
Sbjct: 186 LEVESSSSSKINNSNNNNHSNSNL 209

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 70.2 bits (173), Expect = 8e-16
 Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81
          RGPWTPEEDELL   + K G G W  + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 92  PDEEDLILRLHRLLGNR-WSLIAGRIPGRTDNEIKNYWNTHL 132
           P+E++L++   +  GN  WS IA  +PGRTDN+ KN WN +L
Sbjct: 6   PEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          +G WT EEDELL   + K G+  W  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 29  KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 88
           +   K G W   EDE L   + K G   W  +         GK    RW N+L P +K+ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 89  HIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWN 129
           + + +E++ ++ L + LG +WS IA     RT  +    + 
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 56.4 bits (137), Expect = 6e-11
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 92  PDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHL 132
            +E++L+L   +  G N W  IA  +PGRT  + +  W   L
Sbjct: 4   EEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 92  PDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSK 134
            +E++L++ L +  G N W  IA  +PGRT  + +  W   L  
Sbjct: 6   EEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 56.4 bits (137), Expect = 8e-11
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 36 PWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81
          PWT EEDELL   + K G+  W  + K     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 37 WTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEED 96
          WT EEDE L   + K G   W+ + +  G  R   +CR RW   LRP   RG     EED
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPW-TKEED 56

Query: 97 LIL 99
            L
Sbjct: 57 QRL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            +E++ +L+L    GN W  IA  + GRT +  ++ W   L  K 
Sbjct: 3   EEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 228 HDSEYHQNGMMENPYTSLSNCDHHHDD---DGGLGLRSNNVNNVFNEGLSYEVDVDINYC 284
           H  E   +G  + P   +S+   H DD   +GG G   N++N VF     YE   D  +C
Sbjct: 146 HKPEEEVSGGQKYPIEPISSS--HTDDTTVNGGDGDSKNSIN-VFGGEHGYE---DFGFC 199

Query: 285 NDDVFSSFLNSLINE 299
            DD FSSFLNSLIN+
Sbjct: 200 YDDKFSSFLNSLIND 214

Length = 249

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 36 PWTPEEDELLANYINKEGEGRWR 58
           WT EEDE L   + K G G W 
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.98
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.81
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.72
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.62
PLN03212	249	Transcription repressor MYB5; Provisional	99.61
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.6
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.57
PLN03091	459	hypothetical protein; Provisional	99.55
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.54
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.34
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.33
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.3
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.11
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.99
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.99
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.88
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.83
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.41
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.17
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.69
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.52
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.49
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.31
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.13
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.04
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.72
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.59
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.59
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.56
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.52
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.51
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.18
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.96
PRK13923	170	putative spore coat protein regulator protein YlbO	95.92
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.78
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.82
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.71
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.58
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.47
KOG2656	445	consensus DNA methyltransferase 1-associated prote	94.21
PRK13923	170	putative spore coat protein regulator protein YlbO	94.12
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	93.4
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	92.06
KOG4282	345	consensus Transcription factor GT-2 and related pr	89.7
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	87.41
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	86.77
KOG4167	907	consensus Predicted DNA-binding protein, contains	86.23
KOG3648	1179	consensus Golgi apparatus protein (cysteine-rich f	84.95
KOG1194	534	consensus Predicted DNA-binding protein, contains	83.88
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	82.44
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	80.67
KOG4282	345	consensus Transcription factor GT-2 and related pr	80.53

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=3.4e-42  Score=323.24  Aligned_cols=134  Identities=82%  Similarity=1.480  Sum_probs=127.2

Q ss_pred             hccCCCCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHH
Q 040726           18 AATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDL   97 (375)
Q Consensus        18 ~~~~~~~~~c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~   97 (375)
                      ..+.+.++||.|.+++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++
T Consensus         9 ~~~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~l   88 (249)
T PLN03212          9 PVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDL   88 (249)
T ss_pred             CCCCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHH
Confidence            35679999999999999999999999999999999998999999998645999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCc
Q 040726           98 ILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQ  151 (375)
Q Consensus        98 Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~  151 (375)
                      |++++.+||++|..||+.|||||+++||+||+.+|++++.++++++.+++|+..
T Consensus        89 Llel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~  142 (249)
T PLN03212         89 ILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDA  142 (249)
T ss_pred             HHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCc
Confidence            999999999999999999999999999999999999999999999998888643

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=3.8e-35  Score=293.46  Aligned_cols=135  Identities=59%  Similarity=1.101  Sum_probs=128.4

Q ss_pred             CCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHH
Q 040726           23 STPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLH  102 (375)
Q Consensus        23 ~~~~c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv  102 (375)
                      +.+||.|.+++|++||+|||++|+++|.+||.++|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++
T Consensus         3 r~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~   82 (459)
T PLN03091          3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (459)
T ss_pred             CCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999875599999999999999999999999999999999999


Q ss_pred             HHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCc
Q 040726          103 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSS  157 (375)
Q Consensus       103 ~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~  157 (375)
                      ++||++|.+||++|+|||+++||+||+.+|+++++..++++.+++|+...++...
T Consensus        83 k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~d  137 (459)
T PLN03091         83 AVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGED  137 (459)
T ss_pred             HHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccccc
Confidence            9999999999999999999999999999999999999999999999987665433

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.98  E-value=1.7e-32  Score=260.24  Aligned_cols=115  Identities=66%  Similarity=1.152  Sum_probs=108.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchh
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSL  111 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~  111 (375)
                      +.||+||+|||++|+++|++||.++|..|++.++.+|++++||.||.|||+|++++|.||+|||++|++++.++|++|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            45899999999999999999999999999999995599999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCC
Q 040726          112 IAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTH  146 (375)
Q Consensus       112 IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~  146 (375)
                      ||++|||||++.|||+|+..|++++...+.++...
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~  121 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTH  121 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999998877554443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=7.1e-21  Score=196.58  Aligned_cols=158  Identities=20%  Similarity=0.287  Sum_probs=139.0

Q ss_pred             HHHHHhccCCCCCccC------CCCCCcCCCCHHHHHHHHHHHHHhCCC---CccccccccCccccccchhhhhhhccCC
Q 040726           13 AAAAAAATNKSTPCCS------KVGLKRGPWTPEEDELLANYINKEGEG---RWRTLPKRAGLLRCGKSCRLRWMNYLRP   83 (375)
Q Consensus        13 a~aa~~~~~~~~~~c~------k~~~kkg~WT~EED~~L~~lV~k~g~~---~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p   83 (375)
                      -+|+.++++|+.++|.      ...++++.||.|||.+|+.+|+....+   +|++|-..|++ |+..|...||...|+|
T Consensus       278 ~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympg-r~~~qLI~R~~~~LdP  356 (939)
T KOG0049|consen  278 MIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPG-RTRQQLITRFSHTLDP  356 (939)
T ss_pred             HHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCC-cchhhhhhhheeccCc
Confidence            4788999999999995      345778899999999999999998654   79999999998 9999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcc
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVT  162 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~  162 (375)
                      ++++|+||.+||.+|+.+|.+||. .|.+|-..+|||++.|||.||.+.|...++...|+-        .+|..++..++
T Consensus       357 sikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l--------~edeqL~~~V~  428 (939)
T KOG0049|consen  357 SVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTL--------VEDEQLLYAVK  428 (939)
T ss_pred             cccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceee--------cchHHHHHHHH
Confidence            999999999999999999999995 599999999999999999999999999988876654        44556777777


Q ss_pred             cCCC-CcchhhhhcCCCC
Q 040726          163 NSNS-KASTSKAILNSSS  179 (375)
Q Consensus       163 ~~~~-k~s~i~~~~~~~s  179 (375)
                      .+|. .|.+++.++..++
T Consensus       429 ~YG~g~WakcA~~Lp~~t  446 (939)
T KOG0049|consen  429 VYGKGNWAKCAMLLPKKT  446 (939)
T ss_pred             HHccchHHHHHHHccccc
Confidence            7765 7888887776554

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.72  E-value=4.7e-18  Score=175.91  Aligned_cols=99  Identities=25%  Similarity=0.463  Sum_probs=93.2

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhC-
Q 040726           28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLG-  106 (375)
Q Consensus        28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G-  106 (375)
                      -.|++++|+||.+||.+|..+|.+||..+|.+|-..+++ |+..|||+||.|+|+...|++.||-.||+.|+.+|.+|| 
T Consensus       354 LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn-RSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~  432 (939)
T KOG0049|consen  354 LDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN-RSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGK  432 (939)
T ss_pred             cCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC-ccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHcc
Confidence            368999999999999999999999999999999999998 999999999999999999999999999999999999999 


Q ss_pred             CcchhhcccCCCCCHHHHHHH
Q 040726          107 NRWSLIAGRIPGRTDNEIKNY  127 (375)
Q Consensus       107 ~kW~~IA~~lpgRT~~qcrnR  127 (375)
                      ++|.+||.+||+||.+|.+.|
T Consensus       433 g~WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  433 GNWAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             chHHHHHHHccccchhHHHHH
Confidence            789999999999999554433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.62  E-value=2.5e-16  Score=118.40  Aligned_cols=60  Identities=42%  Similarity=0.840  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHH
Q 040726           37 WTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLI   98 (375)
Q Consensus        37 WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~L   98 (375)
                      ||+|||++|+.+|.+|| .+|..||+.|+. |++.+|+.||.++|.+.+++++||++||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~-Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGN-RTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTT-S-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCc-CCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 599999999975 9999999999999999999999999999987

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.61  E-value=1.9e-16  Score=149.61  Aligned_cols=92  Identities=14%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccC-CCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchh
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRI-PGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSAD  159 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l-pgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~  159 (375)
                      ++.+++++||+|||++|+++|++|| .+|..||+.+ ++|+++|||.||.++|++.+++.        +|+.+||..++.
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg--------pWT~EED~lLle   91 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG--------GITSDEEDLILR   91 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC--------CCChHHHHHHHH
Confidence            3578999999999999999999999 6899999998 69999999999999999998876        556666777888


Q ss_pred             hcccCCCCcchhhhhcCCCCCC
Q 040726          160 QVTNSNSKASTSKAILNSSSSN  181 (375)
Q Consensus       160 ~~~~~~~k~s~i~~~~~~~s~n  181 (375)
                      .+...|.+|+.|+..+.+++.+
T Consensus        92 l~~~~GnKWs~IAk~LpGRTDn  113 (249)
T PLN03212         92 LHRLLGNRWSLIAGRIPGRTDN  113 (249)
T ss_pred             HHHhccccHHHHHhhcCCCCHH
Confidence            8999999999999999988653

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=4.1e-16  Score=158.51  Aligned_cols=106  Identities=26%  Similarity=0.570  Sum_probs=100.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcch
Q 040726           31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWS  110 (375)
Q Consensus        31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~  110 (375)
                      -++.|.|+.-||+.|..+|++||.+.|.+|++.+.. ++++||+.||..+|+|.|++..|+.|||++|+.+.+.+...|.
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~-kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNR-KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHhh-cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            467899999999999999999999999999999987 9999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726          111 LIAGRIPGRTDNEIKNYWNTHLSKKLIS  138 (375)
Q Consensus       111 ~IA~~lpgRT~~qcrnRW~~~L~~~l~~  138 (375)
                      .|+..| ||+..||-.||.++|......
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            999999 999999999999999766543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.57  E-value=2.2e-15  Score=155.74  Aligned_cols=109  Identities=27%  Similarity=0.447  Sum_probs=103.2

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCC
Q 040726           28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGN  107 (375)
Q Consensus        28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~  107 (375)
                      ....++.|.|+..||+.|..+|++||+++|.+||..+.. |++++|+.||.++++|.+++..|+.|||..|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            455678999999999999999999999999999999987 9999999999999999999999999999999999999999


Q ss_pred             cchhhcccCCCCCHHHHHHHHHHhhhhHHH
Q 040726          108 RWSLIAGRIPGRTDNEIKNYWNTHLSKKLI  137 (375)
Q Consensus       108 kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~  137 (375)
                      .|..|+..+++|+..+|.+||...+.....
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999988866544

>PLN03091 hypothetical protein; Provisional

Probab=99.55  E-value=1.1e-15  Score=154.15  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=83.0

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccC-CCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchh
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRI-PGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSAD  159 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l-pgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~  159 (375)
                      +..+++++||+|||++|+++|.+|| .+|..||+.+ ++|+++|||.||.++|++.++++        +|+.++|..++.
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg--------pWT~EED~lLLe   80 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG--------TFSQQEENLIIE   80 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC--------CCCHHHHHHHHH
Confidence            4678999999999999999999999 5799999998 59999999999999999998765        667777888899


Q ss_pred             hcccCCCCcchhhhhcCCCCCC
Q 040726          160 QVTNSNSKASTSKAILNSSSSN  181 (375)
Q Consensus       160 ~~~~~~~k~s~i~~~~~~~s~n  181 (375)
                      .+...|.+|+.|+..+.+|+.+
T Consensus        81 L~k~~GnKWskIAk~LPGRTDn  102 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDN  102 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHH
Confidence            9999999999999999988765

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.54  E-value=1.3e-15  Score=144.83  Aligned_cols=90  Identities=13%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhh
Q 040726           83 PSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP-GRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQ  160 (375)
Q Consensus        83 p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~  160 (375)
                      +.+.||+||+|||++|+++|++|| .+|..|++.++ +|++++||.||.+||++.++++.|        +.+|+..++..
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~f--------T~eEe~~Ii~l   76 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNF--------SDEEEDLIIKL   76 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCC--------CHHHHHHHHHH
Confidence            345579999999999999999999 56999999998 999999999999999999987655        45556667888


Q ss_pred             cccCCCCcchhhhhcCCCCC
Q 040726          161 VTNSNSKASTSKAILNSSSS  180 (375)
Q Consensus       161 ~~~~~~k~s~i~~~~~~~s~  180 (375)
                      ....|.+|+.|+..+.|+.+
T Consensus        77 H~~~GNrWs~IA~~LPGRTD   96 (238)
T KOG0048|consen   77 HALLGNRWSLIAGRLPGRTD   96 (238)
T ss_pred             HHHHCcHHHHHHhhCCCcCH
Confidence            88999999999999999976

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.42  E-value=9e-14  Score=145.27  Aligned_cols=104  Identities=28%  Similarity=0.586  Sum_probs=93.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC--CCCCCCChHHHHHHHHHHH-------
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS--VKRGHIAPDEEDLILRLHR-------  103 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~--lkkg~WT~EED~~Ll~lv~-------  103 (375)
                      ++|.||+||++.|..+|.++| ++|..|++.|+  |.+..||+||++|...+  .+++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999 69999999997  99999999999999887  4899999999999999995       


Q ss_pred             Hh-------------------CCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhC
Q 040726          104 LL-------------------GNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQ  139 (375)
Q Consensus       104 ~~-------------------G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~  139 (375)
                      ++                   +-.|..|++.+..|+..|||.+|+.++...+...
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence            33                   1259999998899999999999999987765433

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.34  E-value=8.4e-13  Score=95.40  Aligned_cols=46  Identities=30%  Similarity=0.625  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc-chhhcccCC-CCCHHHHHHHHHHhh
Q 040726           87 RGHIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL  132 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~k-W~~IA~~lp-gRT~~qcrnRW~~~L  132 (375)
                      |++||+|||++|+++|.+||.. |..||..|+ +||..||++||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.33  E-value=2.9e-13  Score=97.79  Aligned_cols=48  Identities=46%  Similarity=0.814  Sum_probs=42.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhcc
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL   81 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L   81 (375)
                      |++||+|||++|+++|.+||.++|..||..|+++|++.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997669999999993499999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.30  E-value=7.4e-13  Score=99.49  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=46.3

Q ss_pred             CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCC
Q 040726           90 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPR  144 (375)
Q Consensus        90 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~  144 (375)
                      ||+|||++|+.+|.+||.+|..||+.|+.||..+|++||+..|++.+.+.+|++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~e   55 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKE   55 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHH
Confidence            9999999999999999999999999996699999999999988877766655543

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.11  E-value=8.7e-11  Score=82.59  Aligned_cols=47  Identities=34%  Similarity=0.772  Sum_probs=44.3

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      +++||++||.+|+.++..|| .+|..||..|++||..+|+.||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.99  E-value=5.9e-10  Score=77.20  Aligned_cols=44  Identities=32%  Similarity=0.682  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           89 HIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      +||.+||.+|+.++..|| .+|..||..|++|+..+|+.||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.99  E-value=2.5e-10  Score=80.19  Aligned_cols=48  Identities=42%  Similarity=0.850  Sum_probs=44.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccC
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      ++.||++||.+|+.++..||..+|..||..|++ |++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~-rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCHHHHHHHHHHHcC
Confidence            468999999999999999996799999999997 999999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.88  E-value=7.9e-10  Score=116.06  Aligned_cols=121  Identities=24%  Similarity=0.307  Sum_probs=97.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC-----------------------CCccccccccCccccccchhhhhhhccCCCC-CCCC
Q 040726           34 RGPWTPEEDELLANYINKEGE-----------------------GRWRTLPKRAGLLRCGKSCRLRWMNYLRPSV-KRGH   89 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~-----------------------~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~l-kkg~   89 (375)
                      -+.|+.+||+.|...|..|-.                       +-|..|...|+. |+.+..+.+-++.-.|-- ++|.
T Consensus       308 ~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~rg~  386 (607)
T KOG0051|consen  308 LKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENKRGK  386 (607)
T ss_pred             hhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCccccccCC
Confidence            388999999999999998811                       126778888888 999888773333333322 9999


Q ss_pred             CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcc
Q 040726           90 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVT  162 (375)
Q Consensus        90 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~  162 (375)
                      ||+||++.|..+|.++|+.|..|++.| ||.+..|+.||+.+....-+      +....|+.++...++..|+
T Consensus       387 wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~------~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  387 WTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK------RNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             CCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc------cccCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999 99999999999998866532      3346777777777777775

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.83  E-value=1.7e-09  Score=74.82  Aligned_cols=45  Identities=47%  Similarity=0.861  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhcc
Q 040726           36 PWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL   81 (375)
Q Consensus        36 ~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L   81 (375)
                      +||.+||.+|+.++.+||..+|..||+.|++ |+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHhC
Confidence            5999999999999999997799999999998 99999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=9.2e-08  Score=98.36  Aligned_cols=86  Identities=20%  Similarity=0.280  Sum_probs=77.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhccc
Q 040726           85 VKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTN  163 (375)
Q Consensus        85 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~~  163 (375)
                      ++.|-|+.-||+.|..+|.+|| +.|++|+..++..+..||++||+.++++.+++-.|        +.++|..++.....
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tew--------s~eederlLhlakl   76 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEW--------SREEDERLLHLAKL   76 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhh--------hhhHHHHHHHHHHh
Confidence            5678999999999999999999 67999999999999999999999999999987654        55677888999999


Q ss_pred             CCCCcchhhhhcCCC
Q 040726          164 SNSKASTSKAILNSS  178 (375)
Q Consensus       164 ~~~k~s~i~~~~~~~  178 (375)
                      .+++|.+|++++...
T Consensus        77 ~p~qwrtIa~i~gr~   91 (617)
T KOG0050|consen   77 EPTQWRTIADIMGRT   91 (617)
T ss_pred             cCCccchHHHHhhhh
Confidence            999999999887653

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.17  E-value=1.5e-06  Score=90.87  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=100.7

Q ss_pred             hHHHHHHhccCCCCCccC-------CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCC
Q 040726           11 TAAAAAAAATNKSTPCCS-------KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP   83 (375)
Q Consensus        11 ~sa~aa~~~~~~~~~~c~-------k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p   83 (375)
                      -+++|+.... +...+|.       .+.++++.|+.|||+.|+.+-..+|. .|..||..+++ |+..+|.+||.+.|.+
T Consensus        43 ws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d~-rt~~~~~ery~~~~~~  119 (512)
T COG5147          43 WSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKDR-RTAQQCVERYVNTLED  119 (512)
T ss_pred             HHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccCc-cchHHHHHHHHHHhhh
Confidence            3556666654 7777774       57899999999999999999999996 79999999998 9999999999999987


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      ... ..|+..++...+..+..|+..|..+......+-...|.+++..+.
T Consensus       120 ~~s-~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~  167 (512)
T COG5147         120 LSS-THDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYR  167 (512)
T ss_pred             hhc-cccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHH
Confidence            666 889999999999999999999988887777777888888886554

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.69  E-value=2.9e-05  Score=58.57  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=43.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCc---cccccccCccc-cccchhhhhhhcc
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRW---RTLPKRAGLLR-CGKSCRLRWMNYL   81 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W---~~IA~~~~~~R-t~~QCr~Rw~~~L   81 (375)
                      ++-.||+||..+++++|+.+|.++|   ..|++.|...| |..||+.++..|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999998899   99999887546 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.52  E-value=0.00018  Score=54.33  Aligned_cols=47  Identities=19%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhCC-cc---hhhcccCC-CC-CHHHHHHHHHHhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGN-RW---SLIAGRIP-GR-TDNEIKNYWNTHL  132 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~-kW---~~IA~~lp-gR-T~~qcrnRW~~~L  132 (375)
                      .+-.||+||..++++++..||. +|   ..|++.|. .| |..||+.++..+.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999996 99   99999884 45 9999999998765

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.49  E-value=4.9e-05  Score=77.45  Aligned_cols=50  Identities=20%  Similarity=0.533  Sum_probs=45.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhcc
Q 040726           31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL   81 (375)
Q Consensus        31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L   81 (375)
                      .+-...||.+|+-+|++++..||-|||..||.+++. |+..+|+++|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGt-Ktkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGT-KTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcc-cchHHHHHHHHHHH
Confidence            345667999999999999999999999999999997 99999999999865

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.31  E-value=0.00024  Score=72.49  Aligned_cols=49  Identities=29%  Similarity=0.417  Sum_probs=45.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      .+-...||.+|+.+|++++..|| ++|..||.++..|+..+|+.+|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            45567899999999999999999 99999999999999999999998765

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.13  E-value=0.00039  Score=62.62  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             CCCCCChHHHHHHHHHHHHh---CC----cchhhcccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726           86 KRGHIAPDEEDLILRLHRLL---GN----RWSLIAGRIPGRTDNEIKNYWNTHLSKKLIS  138 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~---G~----kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~  138 (375)
                      +...||.|||.+|.+.|-.|   |+    -...+++.| +||+..|.-||+.++++.+..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45689999999999999887   32    288999999 999999999999999987654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.04  E-value=0.0013  Score=61.44  Aligned_cols=100  Identities=19%  Similarity=0.356  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcc--ccccchhhhhhhcc-CCCC--------------------CCCCCCh
Q 040726           36 PWTPEEDELLANYINKEGEGRWRTLPKRAGLL--RCGKSCRLRWMNYL-RPSV--------------------KRGHIAP   92 (375)
Q Consensus        36 ~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~--Rt~~QCr~Rw~~~L-~p~l--------------------kkg~WT~   92 (375)
                      +|++++|-+|+.+|..-.  +-..|+.-+...  -|-..+.+||+..| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998754  666666554432  36677888999876 3332                    2568999


Q ss_pred             HHHHHHHHHHHHhCC---cchhhcc-----cCCCCCHHHHHHHHHHhhhhHHH
Q 040726           93 DEEDLILRLHRLLGN---RWSLIAG-----RIPGRTDNEIKNYWNTHLSKKLI  137 (375)
Q Consensus        93 EED~~Ll~lv~~~G~---kW~~IA~-----~lpgRT~~qcrnRW~~~L~~~l~  137 (375)
                      +|+++|.........   .+.+|=.     +-++||++.+..+|..+.+..+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999997655432   3555422     23789999999999965554443

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.72  E-value=0.00068  Score=69.79  Aligned_cols=46  Identities=22%  Similarity=0.528  Sum_probs=42.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~   80 (375)
                      ....||.+|..+|++.|+.|| .+|.+||.+++. |+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgt-Kt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGT-KTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCC-CCHHHHHHHHHcC
Confidence            566899999999999999999 499999999998 9999999999874

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.59  E-value=0.0012  Score=52.68  Aligned_cols=50  Identities=26%  Similarity=0.462  Sum_probs=35.2

Q ss_pred             CCCCChHHHHHHHHHHHH------hC--C------cchhhcccC----CCCCHHHHHHHHHHhhhhHHH
Q 040726           87 RGHIAPDEEDLILRLHRL------LG--N------RWSLIAGRI----PGRTDNEIKNYWNTHLSKKLI  137 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~------~G--~------kW~~IA~~l----pgRT~~qcrnRW~~~L~~~l~  137 (375)
                      |..||.+|...||.++..      ++  .      .|..||..|    ..||..||+.||.++. +.++
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~-~~Yk   68 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK-KKYK   68 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH-HHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHH
Confidence            347999999999999987      21  1      399999998    3599999999999855 5454

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.59  E-value=0.0022  Score=67.42  Aligned_cols=46  Identities=15%  Similarity=0.289  Sum_probs=43.0

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH  131 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~  131 (375)
                      .+..||.+|+-+|++++..||.+|.+||.++.+||..+|-.||..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999999754

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.56  E-value=0.0013  Score=69.28  Aligned_cols=46  Identities=26%  Similarity=0.614  Sum_probs=42.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~   80 (375)
                      -++.||.+|+-+|+++|..||. +|.+||.+++. |+..||..++.+.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~-ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGT-KSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCC-CCHHHHHHHHHhc
Confidence            4678999999999999999994 99999999998 9999999999764

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.52  E-value=0.002  Score=66.41  Aligned_cols=45  Identities=16%  Similarity=0.216  Sum_probs=42.2

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 040726           87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH  131 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~  131 (375)
                      ...||.+|..+|++.+..||..|.+||+++..||..||.-||..+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            348999999999999999999999999999999999999999754

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.51  E-value=0.0026  Score=49.27  Aligned_cols=50  Identities=16%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-chhhcccCC-CCCHHHHHHHHHHhhhhHH
Q 040726           87 RGHIAPDEEDLILRLHRLLG--------NR-WSLIAGRIP-GRTDNEIKNYWNTHLSKKL  136 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G--------~k-W~~IA~~lp-gRT~~qcrnRW~~~L~~~l  136 (375)
                      +.+||.|||..|++.|.++.        ++ |..+++.-+ .+|-...|+||...|..+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997653        22 999998877 8999999999998887654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.18  E-value=0.0017  Score=50.23  Aligned_cols=52  Identities=29%  Similarity=0.546  Sum_probs=33.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------CC--ccccccccCccccccchhhhhhhccCCCC
Q 040726           34 RGPWTPEEDELLANYINKEGE------GR--WRTLPKRAGLLRCGKSCRLRWMNYLRPSV   85 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~------~~--W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~l   85 (375)
                      |.+||.|||++|+..|..+..      |+  |..+++..+..++..+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            458999999999999977632      22  99999988755899999999999987643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.96  E-value=0.0016  Score=58.77  Aligned_cols=48  Identities=29%  Similarity=0.637  Sum_probs=41.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC------CCccccccccCccccccchhhhhhhccC
Q 040726           33 KRGPWTPEEDELLANYINKEGE------GRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~------~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      +.-.||.|||.+|.+.|-+|-.      ..+.+|++.+.  ||+.-|..||..++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence            4567999999999999999921      24888999887  999999999999876

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.92  E-value=0.0059  Score=55.71  Aligned_cols=52  Identities=12%  Similarity=0.200  Sum_probs=43.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc-------chhhcccCCCCCHHHHHHHHHHhhhhHHH
Q 040726           85 VKRGHIAPDEEDLILRLHRLLGNR-------WSLIAGRIPGRTDNEIKNYWNTHLSKKLI  137 (375)
Q Consensus        85 lkkg~WT~EED~~Ll~lv~~~G~k-------W~~IA~~lpgRT~~qcrnRW~~~L~~~l~  137 (375)
                      .+...||.|||.+|.+.|-.|+..       ...++..| +||..+|..||+.++++++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            356789999999999998888732       56677778 99999999999999987654

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.78  E-value=0.0027  Score=50.67  Aligned_cols=47  Identities=28%  Similarity=0.596  Sum_probs=32.5

Q ss_pred             cCCCCHHHHHHHHHHHHH--h----C--C-----CCccccccccC---ccccccchhhhhhhc
Q 040726           34 RGPWTPEEDELLANYINK--E----G--E-----GRWRTLPKRAG---LLRCGKSCRLRWMNY   80 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k--~----g--~-----~~W~~IA~~~~---~~Rt~~QCr~Rw~~~   80 (375)
                      |..||.+|...|+.++..  +    +  .     .-|..||..|.   ..|++.||+.||.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999998887  2    1  1     13999999873   349999999999874

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.82  E-value=0.0097  Score=58.97  Aligned_cols=50  Identities=18%  Similarity=0.486  Sum_probs=45.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccC
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      +---.|+..|+-+|++.....|.++|..||..+|. |+...|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGs-r~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGS-RAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhh-hhhHHHHHHHHHHHh
Confidence            33446999999999999999999999999999997 999999999998765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.71  E-value=0.0093  Score=46.78  Aligned_cols=48  Identities=21%  Similarity=0.430  Sum_probs=38.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----Cccccccchhhhhhhcc
Q 040726           34 RGPWTPEEDELLANYINKEGE----------------GRWRTLPKRA----GLLRCGKSCRLRWMNYL   81 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~----------------~~W~~IA~~~----~~~Rt~~QCr~Rw~~~L   81 (375)
                      +..||.+|.+.|+++|.+|..                ..|..|+..+    ++.|+..+|+.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            567999999999999999821                2399998876    22499999999998854

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.58  E-value=0.05  Score=42.61  Aligned_cols=48  Identities=23%  Similarity=0.454  Sum_probs=39.5

Q ss_pred             CCCCChHHHHHHHHHHHHhC----C-------------cchhhcccC-----CCCCHHHHHHHHHHhhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLG----N-------------RWSLIAGRI-----PGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G----~-------------kW~~IA~~l-----pgRT~~qcrnRW~~~L~~  134 (375)
                      +..||.+|...|+++|.+|.    +             .|..|+..|     +.|+..+||.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999998873    1             299999887     249999999999987643

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.47  E-value=0.028  Score=55.79  Aligned_cols=47  Identities=30%  Similarity=0.398  Sum_probs=42.9

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      -..|+.+|+.+|++...-+| ++|..||.++..|+...||.+|..+..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34699999999999999999 899999999999999999999976653

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=94.21  E-value=0.079  Score=53.90  Aligned_cols=53  Identities=23%  Similarity=0.330  Sum_probs=46.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhccc-----CCC-CCHHHHHHHHHHhhhhHHHhCC
Q 040726           88 GHIAPDEEDLILRLHRLLGNRWSLIAGR-----IPG-RTDNEIKNYWNTHLSKKLISQG  140 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G~kW~~IA~~-----lpg-RT~~qcrnRW~~~L~~~l~~~~  140 (375)
                      ..||.+|-+.|+++++.|.-+|..|+..     ++. ||-..+|+||+...++-++.+.
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            4699999999999999999999999998     555 9999999999998877666543

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.12  E-value=0.013  Score=53.42  Aligned_cols=49  Identities=24%  Similarity=0.530  Sum_probs=38.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC------ccccccccCccccccchhhhhhhccC
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGR------WRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~------W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      .+...||.|||.+|.+.|-+|+...      ...++..+.  |++..|..||..++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            3567899999999999999996422      555666665  999999999976654

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=93.40  E-value=0.11  Score=59.50  Aligned_cols=98  Identities=13%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhh-------hhhhc----------------------------
Q 040726           36 PWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRL-------RWMNY----------------------------   80 (375)
Q Consensus        36 ~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~-------Rw~~~----------------------------   80 (375)
                      .|+.-|=..++.+..+||..+...||..|.+ ++...++.       ||..+                            
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888888888889999998889999999976 77766652       22111                            


Q ss_pred             --------------c-CCCCCCCCCChHHHHHHHHHHHHhC-Ccchhhccc------------CCCCCHHHHHHHHHHhh
Q 040726           81 --------------L-RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGR------------IPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        81 --------------L-~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~------------lpgRT~~qcrnRW~~~L  132 (375)
                                    + -+..++..||.|||..|+-++.+|| .+|.+|-..            |..||...+..|...+|
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          0 0122344699999999999999999 779888332            24699999999999887


Q ss_pred             hh
Q 040726          133 SK  134 (375)
Q Consensus       133 ~~  134 (375)
                      +-
T Consensus       985 ~~  986 (1033)
T PLN03142        985 RL  986 (1033)
T ss_pred             HH
Confidence            54

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=92.06  E-value=0.086  Score=53.49  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=42.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           88 GHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      .+|+.+|-++..++...+|..+..|+..+|.|..+|||.+|.+--+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            4799999999999999999999999999999999999999975443

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=89.70  E-value=0.38  Score=48.16  Aligned_cols=48  Identities=13%  Similarity=0.194  Sum_probs=38.9

Q ss_pred             CCCCChHHHHHHHHHHHHhC----------CcchhhcccC----CCCCHHHHHHHHHHhhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLG----------NRWSLIAGRI----PGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G----------~kW~~IA~~l----pgRT~~qcrnRW~~~L~~  134 (375)
                      ...|+.+|-..||++..+.-          ..|..||+.+    .-||+.+||.||.++.++
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~  115 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK  115 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            36899999999999987532          3499999965    239999999999987644

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=87.41  E-value=0.49  Score=40.86  Aligned_cols=51  Identities=24%  Similarity=0.368  Sum_probs=39.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCC----cchhhcccC------------CCCCHHHHHHHHHHhhhh
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLGN----RWSLIAGRI------------PGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IA~~l------------pgRT~~qcrnRW~~~L~~  134 (375)
                      ..++..||.+||.-|+-++.+||-    .|..|-..+            ..||+..+..|...+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            456778999999999999999995    688775543            359999999999988753

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=86.77  E-value=1  Score=36.14  Aligned_cols=45  Identities=31%  Similarity=0.523  Sum_probs=34.3

Q ss_pred             CCChHHHHHHHHHHHHh---CC----------cchhhcccC---CC--CCHHHHHHHHHHhhh
Q 040726           89 HIAPDEEDLILRLHRLL---GN----------RWSLIAGRI---PG--RTDNEIKNYWNTHLS  133 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~---G~----------kW~~IA~~l---pg--RT~~qcrnRW~~~L~  133 (375)
                      .||++++..|++++.+.   |+          .|..|+..|   .|  .+..||++||..+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            49999999999998653   21          299998887   22  578999999976443

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=86.23  E-value=0.94  Score=49.64  Aligned_cols=46  Identities=13%  Similarity=0.187  Sum_probs=42.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      ...||+.|-.++-+++-.|.+++..|++.++++|-.+|-..|+...
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWK  664 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWK  664 (907)
T ss_pred             cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHH
Confidence            3479999999999999999999999999999999999999887654

>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.95  E-value=0.89  Score=49.30  Aligned_cols=10  Identities=20%  Similarity=0.561  Sum_probs=5.2

Q ss_pred             cCcccccchh
Q 040726          347 FGLEANWESP  356 (375)
Q Consensus       347 ~~~~~~~~~~  356 (375)
                      .|-+..|--+
T Consensus       104 ~~~~~~~KLA  113 (1179)
T KOG3648|consen  104 AGAGGGWKLA  113 (1179)
T ss_pred             CCCCCCcccc
Confidence            3445567544

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=83.88  E-value=2.2  Score=44.53  Aligned_cols=48  Identities=13%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      ....||.||-.++-.++..||+.+.+|-..||.|+-..+...|+...+
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            355799999999999999999999999999999999999999876543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=82.44  E-value=0.48  Score=40.93  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=28.2

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 040726           31 GLKRGPWTPEEDELLANYINKEGE---GRWRTLPKRA   64 (375)
Q Consensus        31 ~~kkg~WT~EED~~L~~lV~k~g~---~~W~~IA~~~   64 (375)
                      ..+++.||.+||.-|+-.+.+||.   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            456788999999999999999998   8999997665

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=80.67  E-value=1.5  Score=50.52  Aligned_cols=23  Identities=13%  Similarity=0.120  Sum_probs=16.4

Q ss_pred             HHHhhhhcccCCCCcCCCCCCCc
Q 040726          316 QQHLSNETIALPNTITGSSSDPL  338 (375)
Q Consensus       316 qq~~~~~~~~~~~~~~~~~~~~~  338 (375)
                      +||||++++|-+..+.+++++-+
T Consensus      1879 ~qq~~~~~~q~~sq~~q~p~~~~ 1901 (2131)
T KOG4369|consen 1879 IQQFQQQYQQHQSQSSQQPSDLM 1901 (2131)
T ss_pred             HHHHHHHHhcccCCCCCCCcccc
Confidence            37787788887777777777655

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=80.53  E-value=0.72  Score=46.17  Aligned_cols=47  Identities=21%  Similarity=0.420  Sum_probs=36.7

Q ss_pred             cCCCCHHHHHHHHHHHHHh----C-----CCCcccccccc---Cccccccchhhhhhhc
Q 040726           34 RGPWTPEEDELLANYINKE----G-----EGRWRTLPKRA---GLLRCGKSCRLRWMNY   80 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~----g-----~~~W~~IA~~~---~~~Rt~~QCr~Rw~~~   80 (375)
                      ...|+.+|-..|+++..+.    .     ..-|..||+.+   +..|++.||+.||.++
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl  112 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL  112 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            3789999999999886644    1     13599999954   3349999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	375
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		2e-21
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-21
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		3e-21
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		6e-21
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-20
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-18
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		4e-12
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		4e-08
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		8e-08
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		1e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		3e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		3e-06
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		6e-06

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 32  LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIA 91
           L +GPWT EED+ +   + K G  RW  + K     R GK CR RW N+L P VK+    
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            +E+ +I + H+ LGNRW+ IA  +PGRTDN IKN+WN+ + +K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 32  LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIA 91
           L +GPWT EED+ +   + K G  RW  + K     R GK CR RW N+L P VK+    
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            +E+ +I + H+ LGNRW+ IA  +PGRTDN IKN+WN+ + +K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 32  LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIA 91
           L +GPWT EED+ +   + K G  +W  + K     R GK CR RW N+L P VK+    
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWT 63
Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            +E+ +I   H++LGNRW+ IA  +PGRTDN +KN+WN+ + +K+
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 32  LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIA 91
           L +GPWT EED+ +  ++ K G  RW  + K     R GK CR RW N+L P VK+    
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            +E+ +I + H+ LGNRW+ IA  +PGRTDN +KN+WN+ + +K+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 32  LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIA 91
           L +GPWT EED+ +   + K G  RW  + K     R GK CR RW N+L P VK+    
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 114
Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            +E+ +I + H+ LGNRW+ IA  +PGRTDN IKN+WN+ + +K+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Query: 34  RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL--RCGKSCRLRWMNYLRPSVKRGHIA 91
           +GP+T  ED+L+  Y+ + G   W   P+    L  R  K CR RW N+L P+V +    
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
           P+E++ I R +  LG++WS+IA  IPGRTDN IKN WN+ +SK++
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 33  KRGPWTPEEDELLANYINKEGEGRWR----TLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 88
           K+  +TPEEDE+L   + + G   W+    T P R       + CR RW NYL PS+   
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFPNRNA-----RQCRDRWKNYLAPSISHT 63
Query: 89  HIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKP 148
               +E+ L+++  +  G +W++IA   PGRTD  IKN W T +S KL   GI P+T + 
Sbjct: 64  PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT-ISNKL---GI-PQTQQM 118
Query: 149 L 149
           L
Sbjct: 119 L 119

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 85  VKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
           VK+     +E+ +I + H+ LGNRW+ IA  +PGRTDN IKN+WN+ + +K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 85  VKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
           VK+     +E+ ++ + H+ LGNRW+ IA  +PGRTDN IKN+WN+ + +K+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          L +GPWT EED+ L   + K G  RW  + K     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          L +GPWT EED+ +   + K G  RW  + K     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          L +GPWT EED+ +   + K G  RW  + K     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 38  TPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDL 97
           T EED  L   + + G   W  + +   + R  + CR RW NY+ P+++    +P+E+ L
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 98  ILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW 128
           + + +   G +W+ I+  +  R+DN I+N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	375
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-65
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-63
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	8e-62
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-54
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-51
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-32
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	3e-50
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-26
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-21
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-19
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	8e-15
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	4e-12
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-11
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-10
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-07
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-07
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	9e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	7e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	8e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  203 bits (518), Expect = 2e-65
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 1/124 (0%)

Query: 34  RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPD 93
           +GP+T  ED+L+  Y+ + G   W  +       R  K CR RW N+L P+V +    P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 94  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQEL 153
           E++ I R +  LG++WS+IA  IPGRTDN IKN WN+ +SK++ +         P   + 
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 154 DPSS 157
             ++
Sbjct: 121 RKAA 124

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  196 bits (502), Expect = 2e-63
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 32  LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIA 91
           L +GPWT EED+ +   + K G  RW  + K     R GK CR RW N+L P VK+    
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            +E+ +I + H+ LGNRW+ IA  +PGRTDN IKN+WN+ + +K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  193 bits (493), Expect = 8e-62
 Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 1/106 (0%)

Query: 31  GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHI 90
            L +GPWT EED+ +  ++ K G  RW  + K     R GK CR RW N+L P VK+   
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 91  APDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
             +E+ +I + H+ LGNRW+ IA  +PGRTDN +KN+WN+ + +K+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  174 bits (443), Expect = 3e-54
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 28  SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKR 87
           +    K+  +TPEEDE+L   + + G   W+ +       R  + CR RW NYL PS+  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISH 62

Query: 88  GHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHK 147
                +E+ L+++  +  G +W++IA   PGRTD  IKN W T  +K  I Q      H 
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  167 bits (424), Expect = 5e-51
 Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 1/106 (0%)

Query: 31  GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHI 90
            L +GPWT EED+ +   + K G  RW  + K     R GK CR RW N+L P VK+   
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113

Query: 91  APDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
             +E+ +I + H+ LGNRW+ IA  +PGRTDN IKN+WN+ + +K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  118 bits (297), Expect = 3e-32
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 31  GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHI 90
            L +  WT EEDE L   + + G   W+ +       R    C+ RW   L P + +G  
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 91  APDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHL 132
             +E+  +++L +  G  RWS+IA  + GR   + +  W+ HL
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  163 bits (414), Expect = 3e-50
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 34  RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPD 93
           +  +T EED  L   + + G   W  + +     R  + CR RW NY+ P+++    +P+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPE 59

Query: 94  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
           E+ L+ + +   G +W+ I+  +  R+DN I+N W      + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 99.5 bits (249), Expect = 1e-26
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          L +GPWT EED+ L   + K G  RW  + K     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL--RCGKSCRLRWMNYLRPSVKRG 88
            K G W   EDE+L   + K G+ +W  +   A LL  +  K C+ RW  +L PS+K+ 
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKKT 62

Query: 89 HIAPDEE 95
            +    
Sbjct: 63 EWSGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          L +  WT EEDE L   + + G   W+ +       R    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 67.6 bits (166), Expect = 8e-15
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL--RCGKSCRLRWMNYLRPSVK 86
            +  WT EEDE L   + + G+  W+ L   A     R  + C+ RW+  L     
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFL---ASHFPNRTDQQCQYRWLRVLSGPSS 59

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 61.7 bits (149), Expect = 4e-12
 Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 5   STSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA 64
           S      + A A    ++S          R P+T  E ELL   +   G GRWR +  RA
Sbjct: 2   SPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRA 61

Query: 65  GLL---RCGKSCRLRWMNYLR-----PSVKRGHIAPDE-EDLILRLHRLLGNRWS 110
                 R     + +W   +      P  +RG   P E  D +L          S
Sbjct: 62  FENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 56.2 bits (136), Expect = 7e-11
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL-RCGKSCRLRWMNYLR 82
          KR  W  EED+ L + + K GEG W  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 33  KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL---RCGKSCRLRWMNYLR-----PS 84
            R P++  E E L   + K G GRWR +   A      R     + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 85  VKRGHIAPDE-EDLILRLHRLLGNRWS 110
            +RG   P E  + +L  H     +  
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 33  KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL---RCGKSCRLRWMNYLR-----PS 84
            R P++  E E L   +   G GRWR +  RA      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 85  VKRGHIAPDE-EDLILRLHRLLGNRWS 110
            +RG   P +  D +L  H     +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 4e-09
 Identities = 55/374 (14%), Positives = 104/374 (27%), Gaps = 125/374 (33%)

Query: 6   TSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEE-DELLANYINKEGEGRWRTLPKRA 64
           T         +AA T   +     +       TP+E   LL  Y++   +     LP+  
Sbjct: 272 TRFKQVTDFLSAATTTHIS-----LDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPREV 322

Query: 65  GLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEI 124
                                      P      L          S+IA  I  R     
Sbjct: 323 ----LT-------------------TNP----RRL----------SIIAESI--RDGLAT 343

Query: 125 KNYWNTHLSKKL---ISQGI---DPRTHKPLNQELD--PSSAD---QVTN---SNSKAST 170
            + W      KL   I   +   +P  ++ +   L   P SA     + +    +   S 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 171 SKAILN----SSSSNPNLTPMTVS--SGHLDQRHTSAGCGRMISSIMMINKEN---GYSP 221
              ++N     S         T+S  S +L+ +        +  SI  ++  N    +  
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDS 461

Query: 222 NALVDDHDSEY-------HQNGMMENPYTSLSNCDHHHDD-------------------D 255
           + L+  +  +Y       H           L N +H                       D
Sbjct: 462 DDLIPPYLDQYFYSHIGHH-----------LKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 256 GGLGLRSNNVNNVFNEGLSYEVDVDINYC--NDDVFSSFLNSLINEDAFASQHNQQVLQQ 313
                 S ++ N   +   Y+      Y   ND  +   +N++++   F  +  + ++  
Sbjct: 511 STAWNASGSILNTLQQLKFYK-----PYICDNDPKYERLVNAILD---FLPKIEENLICS 562

Query: 314 QQ----QQHLSNET 323
           +     +  L  E 
Sbjct: 563 KYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 49/323 (15%), Positives = 90/323 (27%), Gaps = 100/323 (30%)

Query: 65  GLLRCGKSC-----------------RLRWMNYLRPSVKRGHIAPDEEDL--ILRLHRLL 105
           G+L  GK+                  ++ W+N         +    E  L  + +L   +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLLYQI 209

Query: 106 GNRW---SLIAGRIPGRTDNEIKNYWNTHLSKK------LISQGI-DPRTHKPLN---QE 152
              W   S  +  I  R  + I+      L  K      L+   + + +     N   + 
Sbjct: 210 DPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 153 LDPSSADQVTNSNSKASTSKAILNSSSSNPNLTP---MTVSSGHLDQRHTS--------- 200
           L  +   QVT+  S A+T+   L+  S    LTP    ++   +LD R            
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHS--MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 201 ----AGCGRMISSIMMINKENGYSPNALVDDHDSEYHQNGMMENPYTSLSNCD--HHHDD 254
               +     I     +   + +        H +      ++E+    L   +     D 
Sbjct: 327 PRRLSIIAESIRD--GLATWDNW-------KHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 255 DGGLGLRSNNVNNVFNEGLSYEVDVDI-------------NYCNDDVFSSFLN-SLINED 300
              L         VF           I                   V +     SL+ + 
Sbjct: 378 ---LS--------VFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 301 AFASQHNQQVLQQQQQQHLSNET 323
              S  +   +  + +  L NE 
Sbjct: 421 PKESTISIPSIYLELKVKLENEY 443

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKR 87
           K+  W+ EE+E L +   K    +WRT+    G  R    C   +   L  + +R
Sbjct: 7  GKKTEWSREEEEKLLHLA-KLMPTQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 83  PSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136
            S K+   + +EE+ +L L +L+  +W  IA  I GRT  +   ++   L K  
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTAAQCLEHYEFLLDKAA 57

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 36  PWTPEEDELLANYINKEGEGRWRTLPKRAGLL---RCGKSCRLRWMNYLR-----PSVKR 87
           P++  E E L   +   G GRWR +  RA      R     + +W   +      P  +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 88  GHIAPDEE-DLILRLHRLLGNR 108
           G   P +  D +L  H     +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL-RCGKSCRLRWMNYLRPSVKRGHIA 91
          KR  W  EED+ L + + K GEG W  +        R     + RW        K   I+
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK----KLKLIS 64

Query: 92 PDEED 96
           D ED
Sbjct: 65 SDSED 69

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL-RCGKSCRLRWMNYLRPSV 85
          K+  WT EE E +   + K GEG W  + K    + R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL-RCGKSCRLRWMNYLRP 83
          K+  WT EE E +   + K GEG W  + K    + R     + RW    R 
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 61

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 19/174 (10%)

Query: 33  KRGPWTPEEDELLANYINKEGEGR-----WRTLPKRAGLL--RCGKSCRLRWMNYLRPSV 85
            +  +T EEDE + + + K    R     +  +   +  +    G S R R+  YL   +
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEI---SHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 86  KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRT 145
           +  +       L+       GN                IK  ++      L         
Sbjct: 64  EYVYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFY 114

Query: 146 HKPLNQELDPSSADQVTNSNSKASTSKAILNSSSSNPNLTPMTVSSGHLDQRHT 199
                 + D   +         A   + +    +  P   P   +     +R  
Sbjct: 115 RDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGP 168

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 11/87 (12%), Positives = 30/87 (34%)

Query: 74  RLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLS 133
                +  R ++       +E     +     G  WS IA  +  +T ++ KN++  +  
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 134 KKLISQGIDPRTHKPLNQELDPSSADQ 160
           ++ + + +     K   +        +
Sbjct: 63  RQNLDEILQQHKLKMEKERNARRKKKK 89

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 88
            G +TPEE E L     K G   W T+    G  R   S + R    ++ +   G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS 84
              WT +E+  L   +   G G W+ +  +    +  + C   +M Y    
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY 80
               W  +E+ LL +     G G W  +    G  R  + CR  ++  
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKP 148
            +E++L  +     G RW+ I+  I  RT  ++K+Y   +  K  +  G+D  T   
Sbjct: 14  IEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYF-KNKVKCGLDKETPNQ 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.9
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.83
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.68
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.67
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.66
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.65
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.65
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.63
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.62
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.62
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.62
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.6
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.58
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.58
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.49
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.15
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.43
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.37
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.35
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.34
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.33
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.26
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.23
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.21
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.84
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.19
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.19
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.17
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.17
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.17
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.1
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.92
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.91
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.9
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.77
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.7
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.62
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.61
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.49
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.42
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.36
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.34
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.31
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.29
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.18
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.04
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.92
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.87
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.87
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.84
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.81
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.95
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.54
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.5
2crg_A	70	Metastasis associated protein MTA3; transcription	97.48
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.26
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.22
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	97.01
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.87
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	96.82
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.77
2crg_A	70	Metastasis associated protein MTA3; transcription	96.67
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.62
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.31
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.85
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.81
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.52
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.71
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.86
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.47
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	90.18
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.15
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	80.29

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.98  E-value=6e-33  Score=230.34  Aligned_cols=105  Identities=45%  Similarity=0.851  Sum_probs=99.4

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcch
Q 040726           31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWS  110 (375)
Q Consensus        31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~  110 (375)
                      .+++|+||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||.+|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            378999999999999999999998899999999988 9999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726          111 LIAGRIPGRTDNEIKNYWNTHLSKKL  136 (375)
Q Consensus       111 ~IA~~lpgRT~~qcrnRW~~~L~~~l  136 (375)
                      .||+.|||||+.+|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999997753

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=1.1e-32  Score=237.92  Aligned_cols=111  Identities=39%  Similarity=0.753  Sum_probs=105.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhc
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIA  113 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA  113 (375)
                      ||+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||.+|..||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            799999999999999999998899999999988 9999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCC
Q 040726          114 GRIPGRTDNEIKNYWNTHLSKKLISQGIDPRT  145 (375)
Q Consensus       114 ~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~  145 (375)
                      +.|+|||+++|++||+.+|++++....++...
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~  112 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEI  112 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            99999999999999999999998766554443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.98  E-value=7.2e-33  Score=237.84  Aligned_cols=119  Identities=41%  Similarity=0.796  Sum_probs=102.1

Q ss_pred             HhccCCCCCccC-------CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCC
Q 040726           17 AAATNKSTPCCS-------KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGH   89 (375)
Q Consensus        17 ~~~~~~~~~~c~-------k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~   89 (375)
                      +..++|+..+|.       ++.+++|+||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.+++++
T Consensus         3 ~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~   81 (128)
T 1h8a_C            3 AVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTS   81 (128)
T ss_dssp             -------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSC
T ss_pred             cccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhccccccccc
Confidence            345678888884       57899999999999999999999998899999999998 9999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726           90 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL  136 (375)
Q Consensus        90 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l  136 (375)
                      ||+|||++|+++|.+||++|..||+.|||||+.+|++||+.++++++
T Consensus        82 WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             CCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999987653

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=6.5e-34  Score=252.64  Aligned_cols=141  Identities=23%  Similarity=0.501  Sum_probs=92.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCC-cc
Q 040726           31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGN-RW  109 (375)
Q Consensus        31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW  109 (375)
                      ++++++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            467899999999999999999998899999999987 9999999999999999999999999999999999999995 69


Q ss_pred             hhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcccCCCCcchhhhhcCCCCC
Q 040726          110 SLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSS  180 (375)
Q Consensus       110 ~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~~~~~k~s~i~~~~~~~s~  180 (375)
                      ..||..|+|||+.||++||.++|++.+++        .+|+.++|..++..+...|.+|..|+..+.+++.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~--------~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~  144 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKK--------TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTD  144 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCC--------SCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccc--------cCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCH
Confidence            99999999999999999999999887643        4677788888899999999999999999988753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=1.1e-32  Score=230.21  Aligned_cols=104  Identities=26%  Similarity=0.503  Sum_probs=99.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhc
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIA  113 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA  113 (375)
                      ||+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||.+|+.+|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            689999999999999999998899999999998 9999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726          114 GRIPGRTDNEIKNYWNTHLSKKLIS  138 (375)
Q Consensus       114 ~~lpgRT~~qcrnRW~~~L~~~l~~  138 (375)
                      +.|||||+++|++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999998876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=4.9e-32  Score=232.45  Aligned_cols=107  Identities=35%  Similarity=0.645  Sum_probs=101.3

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhC
Q 040726           27 CSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLG  106 (375)
Q Consensus        27 c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G  106 (375)
                      ..+...+||+||+|||++|+++|.+||. +|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus         4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            3467889999999999999999999996 99999999988 999999999999999999999999999999999999999


Q ss_pred             CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726          107 NRWSLIAGRIPGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus       107 ~kW~~IA~~lpgRT~~qcrnRW~~~L~~~  135 (375)
                      .+|..||+.|||||+.+||+||+.++++.
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888653

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.5e-30  Score=229.54  Aligned_cols=118  Identities=42%  Similarity=0.789  Sum_probs=104.3

Q ss_pred             hccCCCCCccC-------CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCC
Q 040726           18 AATNKSTPCCS-------KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHI   90 (375)
Q Consensus        18 ~~~~~~~~~c~-------k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~W   90 (375)
                      ..++|+..+|.       ++.+++++||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.+++++|
T Consensus        35 ~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~W  113 (159)
T 1h89_C           35 YLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW  113 (159)
T ss_dssp             --------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCC
T ss_pred             HcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCC
Confidence            34578888884       67899999999999999999999998789999999988 99999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726           91 APDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL  136 (375)
Q Consensus        91 T~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l  136 (375)
                      |+|||.+|++++.+||++|..||+.|||||+++|++||+.++++++
T Consensus       114 T~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             CHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             ChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999987653

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.90  E-value=2.8e-25  Score=190.55  Aligned_cols=112  Identities=20%  Similarity=0.400  Sum_probs=82.9

Q ss_pred             cccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726           60 LPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSKKLIS  138 (375)
Q Consensus        60 IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~  138 (375)
                      ||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++.+++
T Consensus         1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            7888988 9999999999999999999999999999999999999995 6999999999999999999999999887654


Q ss_pred             CCCCCCCCCCCCcCCCCCchhhcccCCCCcchhhhhcCCCCC
Q 040726          139 QGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSS  180 (375)
Q Consensus       139 ~~~~p~~~kp~~~e~d~~~~~~~~~~~~k~s~i~~~~~~~s~  180 (375)
                              .+|+.++|..++..+...|.+|..|+..+.+++.
T Consensus        80 --------~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~  113 (128)
T 1h8a_C           80 --------TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTD  113 (128)
T ss_dssp             --------SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCH
T ss_pred             --------ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCH
Confidence                    4677778888899999999999999999988753

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.1e-21  Score=151.79  Aligned_cols=67  Identities=28%  Similarity=0.576  Sum_probs=63.9

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHH
Q 040726           28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEE   95 (375)
Q Consensus        28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED   95 (375)
                      ..+.+++++||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            346789999999999999999999998899999999997 9999999999999999999999999998

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.71  E-value=5e-18  Score=158.70  Aligned_cols=105  Identities=19%  Similarity=0.316  Sum_probs=92.1

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCccccccchhhhhhhccCCCCC------------------
Q 040726           30 VGLKRGPWTPEEDELLANYINKEGEGR-----WRTLPKRAGLLRCGKSCRLRWMNYLRPSVK------------------   86 (375)
Q Consensus        30 ~~~kkg~WT~EED~~L~~lV~k~g~~~-----W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lk------------------   86 (375)
                      ..++|++||+|||++|+++|.+||..+     |..||+.|++ ||+.|||.||+.+|.+.+.                  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            457889999999999999999998643     9999999998 9999999999999999886                  


Q ss_pred             -----------CCCCChHHHHHHHHHHHH-h-------------------------------------------------
Q 040726           87 -----------RGHIAPDEEDLILRLHRL-L-------------------------------------------------  105 (375)
Q Consensus        87 -----------kg~WT~EED~~Ll~lv~~-~-------------------------------------------------  105 (375)
                                 +..||.+||-.|...+.+ |                                                 
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       889999999999999987 2                                                 


Q ss_pred             ----C----CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726          106 ----G----NRWSLIAGRIPGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus       106 ----G----~kW~~IA~~lpgRT~~qcrnRW~~~L~~~  135 (375)
                          |    ..|..||+.+|+||...+|+||..+|+..
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                1    16999999999999999999999888664

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.68  E-value=1.2e-17  Score=130.50  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=47.2

Q ss_pred             hhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           74 RLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        74 r~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      .-||.++|+|.+++++||+|||++|+++|.+||++|..||+.| |||+++||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 999999999998643

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.2e-17  Score=127.47  Aligned_cols=65  Identities=20%  Similarity=0.299  Sum_probs=59.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCC
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTH  146 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~  146 (375)
                      .|.+++++||+|||++|+++|.+|| .+|..||..|+|||+.|||+||+++|++.+++.+|+++++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999999999999998877776553

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.67  E-value=2.1e-17  Score=140.75  Aligned_cols=83  Identities=25%  Similarity=0.411  Sum_probs=77.1

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----CccccccchhhhhhhccC-----CCCCCC-CCChHHHHH
Q 040726           28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA----GLLRCGKSCRLRWMNYLR-----PSVKRG-HIAPDEEDL   97 (375)
Q Consensus        28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~----~~~Rt~~QCr~Rw~~~L~-----p~lkkg-~WT~EED~~   97 (375)
                      .++..++++||.|||+.|+++|.+||.++|..|++.+    ++ ||+.+|++||+++|+     |.++++ +|+++|+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            3466789999999999999999999988999999985    55 999999999999998     999999 999999999


Q ss_pred             HHHHHHHhCCcchh
Q 040726           98 ILRLHRLLGNRWSL  111 (375)
Q Consensus        98 Ll~lv~~~G~kW~~  111 (375)
                      |+.++..+|++|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999977

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=6.3e-17  Score=123.57  Aligned_cols=60  Identities=27%  Similarity=0.359  Sum_probs=57.1

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCC
Q 040726           80 YLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQG  140 (375)
Q Consensus        80 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~  140 (375)
                      +|+|.+++++||+|||++|+++|.+||.+|.+||+ |+|||++|||+||+++|++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999987653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=4.2e-17  Score=122.22  Aligned_cols=57  Identities=26%  Similarity=0.514  Sum_probs=53.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCC
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVK   86 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lk   86 (375)
                      .+.+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence            46789999999999999999999998899999999998 9999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.66  E-value=3.4e-17  Score=139.62  Aligned_cols=79  Identities=29%  Similarity=0.441  Sum_probs=72.6

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Cccccccchhhhhhhcc-----CCCCCCCCCChHH-HHHH
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA----GLLRCGKSCRLRWMNYL-----RPSVKRGHIAPDE-EDLI   98 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~----~~~Rt~~QCr~Rw~~~L-----~p~lkkg~WT~EE-D~~L   98 (375)
                      +...++++||.|||+.|+++|++||.++|..|++.+    .+ ||+.+|++||+++|     +|.++++.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            455689999999999999999999999999999864    45 99999999999999     8999999999999 8999


Q ss_pred             HHHHHHhCCc
Q 040726           99 LRLHRLLGNR  108 (375)
Q Consensus        99 l~lv~~~G~k  108 (375)
                      +.++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999975

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=1.1e-16  Score=124.47  Aligned_cols=64  Identities=25%  Similarity=0.308  Sum_probs=58.4

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCC
Q 040726           81 LRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRT  145 (375)
Q Consensus        81 L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~  145 (375)
                      ++|.+++++||+|||++|+++|.+||.+|..||.+|+|||+.|||+||+.+|++.++. ++++.+
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~   66 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET   66 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence            5789999999999999999999999999999999999999999999999999887665 665544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.65  E-value=2.8e-17  Score=140.62  Aligned_cols=91  Identities=16%  Similarity=0.394  Sum_probs=81.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhc
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQV  161 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~  161 (375)
                      .+..++++||+|||++|+++|.+||.+|..||..|+||+..||+.||.++|++.+++        .+|+.++|..++..+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~--------~~WT~eEd~~L~~~v   77 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH--------TPWTAEEDALLVQKI   77 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC--------SCCCHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc--------ccCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999887654        367788888899999


Q ss_pred             ccCCCCcchhhhhcCCCCC
Q 040726          162 TNSNSKASTSKAILNSSSS  180 (375)
Q Consensus       162 ~~~~~k~s~i~~~~~~~s~  180 (375)
                      ...|.+|..|+..+.+++.
T Consensus        78 ~~~G~~W~~Ia~~l~gRt~   96 (126)
T 3osg_A           78 QEYGRQWAIIAKFFPGRTD   96 (126)
T ss_dssp             HHHCSCHHHHHTTSTTCCH
T ss_pred             HHHCcCHHHHHHHcCCCCH
Confidence            9999999999999988753

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.65  E-value=1.6e-17  Score=137.30  Aligned_cols=89  Identities=19%  Similarity=0.401  Sum_probs=79.8

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcc
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVT  162 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~  162 (375)
                      ++++++||+|||++|+++|.+||. +|..||..|+|||..||+.||.++|++.+++        .+|+.++|..++..+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~--------~~Wt~eEd~~L~~~~~   72 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK--------TSWTEEEDRIIYQAHK   72 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCC--------CCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccc--------cCCCHHHHHHHHHHHH
Confidence            368999999999999999999996 7999999999999999999999999887643        4677888888899999


Q ss_pred             cCCCCcchhhhhcCCCCC
Q 040726          163 NSNSKASTSKAILNSSSS  180 (375)
Q Consensus       163 ~~~~k~s~i~~~~~~~s~  180 (375)
                      ..|.+|..|+..+.+++.
T Consensus        73 ~~G~~W~~Ia~~l~gRt~   90 (105)
T 1gv2_A           73 RLGNRWAEIAKLLPGRTD   90 (105)
T ss_dssp             HHSSCHHHHHTTCTTCCH
T ss_pred             HhCCCHHHHHHHcCCCCH
Confidence            999999999999988753

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.65  E-value=5.7e-17  Score=118.12  Aligned_cols=52  Identities=46%  Similarity=0.876  Sum_probs=49.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS   84 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~   84 (375)
                      ++|++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            57999999999999999999998789999999988 99999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.63  E-value=8.2e-17  Score=117.19  Aligned_cols=52  Identities=31%  Similarity=0.684  Sum_probs=48.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS   84 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~   84 (375)
                      +++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            57899999999999999999998799999999998 99999999999999984

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.62  E-value=3.9e-17  Score=135.87  Aligned_cols=86  Identities=17%  Similarity=0.262  Sum_probs=77.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcccCC
Q 040726           87 RGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSN  165 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~~~~  165 (375)
                      +++||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|++.+++        .||+.++|..++..+...|
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~--------~~WT~eEd~~L~~~~~~~G   72 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT--------DPWSPEEDMLLDQKYAEYG   72 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT--------CCCCHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc--------cccCHHHHHHHHHHHHHhC
Confidence            589999999999999999995 8999999999999999999999999987654        4677788888999999999


Q ss_pred             CCcchhhhhcCCCCC
Q 040726          166 SKASTSKAILNSSSS  180 (375)
Q Consensus       166 ~k~s~i~~~~~~~s~  180 (375)
                      .+|..|+..+.+++.
T Consensus        73 ~~W~~Ia~~l~gRt~   87 (107)
T 2k9n_A           73 PKWNKISKFLKNRSD   87 (107)
T ss_dssp             SCHHHHHHHHSSSCH
T ss_pred             cCHHHHHHHCCCCCH
Confidence            999999999988753

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=2e-16  Score=118.44  Aligned_cols=55  Identities=25%  Similarity=0.453  Sum_probs=52.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKL  136 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l  136 (375)
                      +|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5788999999999999999999999 699999999999999999999999998865

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.62  E-value=1.3e-16  Score=122.85  Aligned_cols=62  Identities=24%  Similarity=0.342  Sum_probs=57.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccccchhhhhhhccCCCCCCCCCC
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG--LLRCGKSCRLRWMNYLRPSVKRGHIA   91 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~--~~Rt~~QCr~Rw~~~L~p~lkkg~WT   91 (375)
                      ++..++++||+|||++|+++|.+||.++|..||..|+  + |++.||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3456899999999999999999999889999999998  6 999999999999999999988764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.61  E-value=1.1e-16  Score=137.59  Aligned_cols=86  Identities=21%  Similarity=0.379  Sum_probs=78.3

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcccCC
Q 040726           87 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSN  165 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~~~~  165 (375)
                      +|+||+|||++|+.+|.+|| .+|..||..|+|||..||+.||.++|.+.++++        +|+.++|..++..+...|
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~--------~Wt~eEd~~L~~~~~~~G   73 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKH--------AWTPEEDETIFRNYLKLG   73 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCS--------CCCHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCC--------CCCHHHHHHHHHHHHHHC
Confidence            68999999999999999999 689999999999999999999999999887654        677788888899999999


Q ss_pred             CCcchhhhhcCCCCC
Q 040726          166 SKASTSKAILNSSSS  180 (375)
Q Consensus       166 ~k~s~i~~~~~~~s~  180 (375)
                      .+|+.|+..+.+++.
T Consensus        74 ~~W~~Ia~~l~gRt~   88 (131)
T 3zqc_A           74 SKWSVIAKLIPGRTD   88 (131)
T ss_dssp             SCHHHHTTTSTTCCH
T ss_pred             cCHHHHHHHcCCCCH
Confidence            999999999988754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.60  E-value=7.3e-16  Score=112.13  Aligned_cols=50  Identities=24%  Similarity=0.526  Sum_probs=46.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           85 VKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        85 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|+|
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 999999999999999999999999976

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=1.1e-15  Score=111.34  Aligned_cols=50  Identities=28%  Similarity=0.670  Sum_probs=47.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           85 VKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        85 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.|||+||.++|+|
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999996 699999999999999999999999976

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.58  E-value=1.6e-15  Score=116.79  Aligned_cols=61  Identities=28%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhhHHHhCC
Q 040726           80 YLRPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTHLSKKLISQG  140 (375)
Q Consensus        80 ~L~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcrnRW~~~L~~~l~~~~  140 (375)
                      ...+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||+++|++.+.+..
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~   66 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD   66 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence            346678899999999999999999999 69999999999  99999999999999999887654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.58  E-value=3.9e-16  Score=118.98  Aligned_cols=54  Identities=30%  Similarity=0.500  Sum_probs=49.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccccchhhhhhhccCCCCC
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG--LLRCGKSCRLRWMNYLRPSVK   86 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~--~~Rt~~QCr~Rw~~~L~p~lk   86 (375)
                      .+|++||+|||++|+++|.+||.++|..||+.++  + |++.||++||+++++|+++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence            4788999999999999999999889999999865  5 9999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=1.3e-15  Score=114.30  Aligned_cols=54  Identities=19%  Similarity=0.435  Sum_probs=50.9

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726           30 VGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS   84 (375)
Q Consensus        30 ~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~   84 (375)
                      +.+++++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence            4688999999999999999999998899999999998 99999999999999865

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.53  E-value=4.9e-15  Score=111.16  Aligned_cols=53  Identities=19%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||.++|.+
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678999999999999999999999 7999999999999999999999999854

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.53  E-value=7e-15  Score=107.52  Aligned_cols=49  Identities=27%  Similarity=0.290  Sum_probs=46.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcrnRW~~~L~~  134 (375)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            578999999999999999999 69999999999  99999999999999864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=2.6e-15  Score=109.81  Aligned_cols=49  Identities=31%  Similarity=0.478  Sum_probs=46.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccccchhhhhhhccC
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAG--LLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~--~~Rt~~QCr~Rw~~~L~   82 (375)
                      ++++||+|||++|+++|.+||.++|..||..|+  + |++.||++||.++|.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence            589999999999999999999889999999999  6 999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=9.8e-15  Score=113.95  Aligned_cols=58  Identities=17%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhC------CcchhhcccCCCCCHHHHHHHHHHhhhhHHHhC
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLG------NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQ  139 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G------~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~  139 (375)
                      +|.+.+++||+|||++|+++|.+||      .+|.+||..|+|||..|||+||+++|.+.++.+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5788999999999999999999999      689999999999999999999999998876544

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=1.2e-14  Score=110.65  Aligned_cols=52  Identities=23%  Similarity=0.390  Sum_probs=47.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhhHH
Q 040726           85 VKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTHLSKKL  136 (375)
Q Consensus        85 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcrnRW~~~L~~~l  136 (375)
                      .++++||+|||++|+++|.+|| .+|..||+.++  |||+.|||+||++++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4789999999999999999999 58999999865  9999999999999987754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.5e-15  Score=116.52  Aligned_cols=62  Identities=24%  Similarity=0.311  Sum_probs=56.2

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccCccccccchhhhhhhccCCCCCCCCC
Q 040726           28 SKVGLKRGPWTPEEDELLANYINKEGE-----GRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHI   90 (375)
Q Consensus        28 ~k~~~kkg~WT~EED~~L~~lV~k~g~-----~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~W   90 (375)
                      +++.+++++||+|||++|+++|.+||.     ++|..||+.|++ |+..||+.||.+||.+.++.|..
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence            367889999999999999999999996     689999999998 99999999999999887776643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.49  E-value=8.4e-15  Score=109.27  Aligned_cols=50  Identities=22%  Similarity=0.463  Sum_probs=46.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC-ccccccchhhhhhhcc
Q 040726           31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG-LLRCGKSCRLRWMNYL   81 (375)
Q Consensus        31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~-~~Rt~~QCr~Rw~~~L   81 (375)
                      .+.+++||+|||++|+++|.+||.++|..||+.|+ + |+++||++||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence            46788999999999999999999889999999999 6 99999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.2e-15  Score=114.91  Aligned_cols=58  Identities=24%  Similarity=0.356  Sum_probs=52.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCC
Q 040726           28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRG   88 (375)
Q Consensus        28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg   88 (375)
                      .+|.+++++||+|||++|+++|+.||. +|..||+ +++ |++.||++||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence            357899999999999999999999995 9999999 776 999999999999999876654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=4.3e-14  Score=105.43  Aligned_cols=50  Identities=26%  Similarity=0.354  Sum_probs=46.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHhh
Q 040726           83 PSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP-GRTDNEIKNYWNTHL  132 (375)
Q Consensus        83 p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcrnRW~~~L  132 (375)
                      ..+.+++||+|||.+|+++|.+|| ++|..||+.|+ +||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999 89999999999 999999999998875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.15  E-value=1.1e-14  Score=117.78  Aligned_cols=57  Identities=18%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             hccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726           79 NYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus        79 ~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~  135 (375)
                      ..++|.+++++||+|||++|+++|.+||.+|..||..|+|||++||++||+++|++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            356789999999999999999999999999999999999999999999999998664

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=1.6e-14  Score=112.18  Aligned_cols=58  Identities=29%  Similarity=0.362  Sum_probs=52.9

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCC
Q 040726           28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKR   87 (375)
Q Consensus        28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkk   87 (375)
                      ..+.+++++||+|||++|+++|.+||. +|..||+.|++ |+..||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence            356789999999999999999999995 99999999998 99999999999999876655

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.37  E-value=3.9e-13  Score=111.86  Aligned_cols=77  Identities=27%  Similarity=0.413  Sum_probs=66.4

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Cccccccchhhhhhhcc-----CCCCCCCCCChHHHHH-H
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA----GLLRCGKSCRLRWMNYL-----RPSVKRGHIAPDEEDL-I   98 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~----~~~Rt~~QCr~Rw~~~L-----~p~lkkg~WT~EED~~-L   98 (375)
                      +...++++||+|||++|+++|.+||.++|..|++.+    ++ ||..+|++||++++     +|.++++.-++.|-.. +
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            345689999999999999999999998999999975    45 99999999999998     7899999888887655 7


Q ss_pred             HHHHHHhC
Q 040726           99 LRLHRLLG  106 (375)
Q Consensus        99 l~lv~~~G  106 (375)
                      ++|...+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776665

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.35  E-value=3.1e-13  Score=105.53  Aligned_cols=57  Identities=25%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             ccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCC
Q 040726           26 CCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVK   86 (375)
Q Consensus        26 ~c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lk   86 (375)
                      -.-.|.+++++||+|||++|+++|.+||. +|..||+.| + |++.+|+.||.. |....+
T Consensus        15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence            34578999999999999999999999995 799999999 6 999999999985 444433

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.34  E-value=4e-13  Score=106.39  Aligned_cols=57  Identities=23%  Similarity=0.387  Sum_probs=50.9

Q ss_pred             CCCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc
Q 040726           22 KSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        22 ~~~~~c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~   80 (375)
                      +....+.+....+++||+|||++|+++|.+|| ++|.+||+.|++ |+..||+.||.++
T Consensus         6 ~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~   62 (79)
T 2yus_A            6 SGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL   62 (79)
T ss_dssp             SCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred             cCccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence            33334566778899999999999999999999 799999999998 9999999999998

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.33  E-value=6.3e-13  Score=106.24  Aligned_cols=69  Identities=29%  Similarity=0.520  Sum_probs=58.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----cCccccccchhhhhhhcc-----CCCCCCC-CCChHHHHHHHHHHHH
Q 040726           35 GPWTPEEDELLANYINKEGEGRWRTLPKR----AGLLRCGKSCRLRWMNYL-----RPSVKRG-HIAPDEEDLILRLHRL  104 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~----~~~~Rt~~QCr~Rw~~~L-----~p~lkkg-~WT~EED~~Ll~lv~~  104 (375)
                      ++||+|||++|+++|.+||.++|..|++.    +++ ||+.+|++||+++|     .|.++++ +..++.+.+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999985    666 99999999999988     6766655 5666777888887654

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.32  E-value=1.2e-12  Score=102.11  Aligned_cols=51  Identities=12%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           83 PSVKRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        83 p~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      +.+.+++||.+||.+|+.++..||    .+|.+||..|||||.++|++||..++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    689999999999999999999998763

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.26  E-value=1.9e-12  Score=102.50  Aligned_cols=48  Identities=15%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH  131 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~  131 (375)
                      ...+++||+|||.+|+++|.+||.+|.+||++|++||..||+.||.++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999866

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.23  E-value=5.3e-12  Score=118.16  Aligned_cols=78  Identities=22%  Similarity=0.296  Sum_probs=58.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCc------chhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCC
Q 040726           83 PSVKRGHIAPDEEDLILRLHRLLGNR------WSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPS  156 (375)
Q Consensus        83 p~lkkg~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~  156 (375)
                      +.+++++||+|||++|+++|++||++      |..||+.|||||+++||+||+.+|++++... |        ..+++..
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y--------~~ded~~   74 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-Y--------EVDKFGK   74 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-E--------CBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-c--------ccCcchh
Confidence            35778999999999999999999975      9999999999999999999999999986522 3        3344444


Q ss_pred             chhhcccCCCCcchhh
Q 040726          157 SADQVTNSNSKASTSK  172 (375)
Q Consensus       157 ~~~~~~~~~~k~s~i~  172 (375)
                      ++....  |. |..++
T Consensus        75 Li~d~~--Gn-~ikis   87 (246)
T 1ign_A           75 LVRDDD--GN-LIKTK   87 (246)
T ss_dssp             BCBCTT--SC-BCEES
T ss_pred             hhhccC--CC-ceeee
Confidence            444433  44 66665

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.21  E-value=3.1e-12  Score=99.86  Aligned_cols=55  Identities=15%  Similarity=0.353  Sum_probs=49.5

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCccccccccCccccccchhhhhhhccC
Q 040726           27 CSKVGLKRGPWTPEEDELLANYINKEG---EGRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        27 c~k~~~kkg~WT~EED~~L~~lV~k~g---~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      -.++...+++||+|||.+|+++|.+||   ..+|.+||+.|++ ||.+||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            456778899999999999999999998   3589999999998 999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.84  E-value=1.3e-12  Score=105.60  Aligned_cols=53  Identities=21%  Similarity=0.423  Sum_probs=48.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCC
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP   83 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p   83 (375)
                      .+.+++++||+|||++|+++|.+||. +|..||..|++ ||..||+.||.++|..
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR   63 (89)
Confidence            45678999999999999999999995 89999999998 9999999999998863

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.19  E-value=2e-11  Score=101.58  Aligned_cols=54  Identities=20%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCC-cchhhcccC----CCCCHHHHHHHHHHhhhhH
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~l----pgRT~~qcrnRW~~~L~~~  135 (375)
                      .+..++++||+|||+.|+++|.+||. +|..|++.+    ++||+.+||+||+++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34578899999999999999999996 999999975    8999999999999998643

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.19  E-value=2.1e-11  Score=91.93  Aligned_cols=49  Identities=18%  Similarity=0.363  Sum_probs=45.5

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcchhhc---ccCCCCCHHHHHHHHHHhhhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNRWSLIA---GRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA---~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      ++.+||+|||+.|++.|++||.+|..|+   .++++||...+++||+++++.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   678999999999999988753

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.17  E-value=2e-11  Score=97.46  Aligned_cols=48  Identities=23%  Similarity=0.391  Sum_probs=44.4

Q ss_pred             CCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHhhhhH
Q 040726           88 GHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcrnRW~~~L~~~  135 (375)
                      .+||+|||+.|+++|.+||. +|..|++.    |+|||+.+||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999996 99999985    89999999999999999654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.17  E-value=1.4e-11  Score=104.98  Aligned_cols=54  Identities=24%  Similarity=0.383  Sum_probs=47.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHhhhhH
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcrnRW~~~L~~~  135 (375)
                      ....++++||.|||+.|+++|.+||. +|..|++.    |++||+.+||+||+++++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34457899999999999999999996 99999986    48999999999999999543

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.17  E-value=1.2e-11  Score=105.15  Aligned_cols=87  Identities=21%  Similarity=0.275  Sum_probs=62.4

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCC
Q 040726           81 LRPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDP  155 (375)
Q Consensus        81 L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~  155 (375)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++........  +...++..+++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~--krg~~~p~e~~~   88 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ--RRGEPVPQDLLD   88 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTT--CCCSCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcc--cCCCCCCHHHHH
Confidence            566788999999999999999999996 99999998    48999999999999999743321111  112244444444


Q ss_pred             CchhhcccCCCCcc
Q 040726          156 SSADQVTNSNSKAS  169 (375)
Q Consensus       156 ~~~~~~~~~~~k~s  169 (375)
                      .+.......|.+|.
T Consensus        89 rv~~~h~~~gn~~~  102 (121)
T 2juh_A           89 RVLAAHAYWSQQQG  102 (121)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccchh
Confidence            44444444444544

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.10  E-value=6.9e-11  Score=96.30  Aligned_cols=50  Identities=20%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726           86 KRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcrnRW~~~L~~~  135 (375)
                      .+++||.|||++|+.++.+||    .+|.+||..|||||.++|++||..++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    67999999999999999999999987653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.92  E-value=1.1e-09  Score=88.94  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=60.6

Q ss_pred             cccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccC-----CCCCHHHHHHHHHHhhhhHHHhCC
Q 040726           69 CGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRI-----PGRTDNEIKNYWNTHLSKKLISQG  140 (375)
Q Consensus        69 t~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~qcrnRW~~~L~~~l~~~~  140 (375)
                      ...=+.++|.++|.+    .+||.||++.|++|+++||.+|..|+.++     ++||..++|+||+.+.++.+..++
T Consensus        16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            345678999999976    79999999999999999999999999999     589999999999999887776553

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.91  E-value=2.2e-10  Score=93.37  Aligned_cols=47  Identities=13%  Similarity=0.361  Sum_probs=43.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCCccccccccCccccccchhhhhhhcc
Q 040726           34 RGPWTPEEDELLANYINKEG---EGRWRTLPKRAGLLRCGKSCRLRWMNYL   81 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g---~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L   81 (375)
                      +++||.|||++|++++.+|+   .++|.+||+.|++ ||.++|+.||.+++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~   57 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV   57 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            56899999999999999997   4579999999998 99999999998864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.7e-09  Score=81.22  Aligned_cols=47  Identities=11%  Similarity=0.077  Sum_probs=43.8

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      ..++||+||++++++++.+||++|..||..||+||..+|+.+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999998654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.77  E-value=4.2e-09  Score=81.84  Aligned_cols=51  Identities=16%  Similarity=0.195  Sum_probs=45.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLSKK  135 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcrnRW~~~L~~~  135 (375)
                      ..+.+.||.|||++|.+++.+|+    .+|.+||..| |||..+|+.||..+....
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence            45678999999999999999997    5799999998 999999999999876553

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.70  E-value=5.3e-09  Score=78.79  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=42.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc---cccCccccccchhhhhhhccC
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLP---KRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA---~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      .+++||+|||+.|+++|++||. +|..|+   ..+.+ |+...+++||++...
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence            6789999999999999999996 999999   45555 999999999998754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.62  E-value=2.8e-08  Score=92.32  Aligned_cols=49  Identities=16%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      ...+||+||+.++++++.+||++|..||+.|++||..|||++|+++.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999988754

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=1.9e-08  Score=75.43  Aligned_cols=48  Identities=13%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhcc
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL   81 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L   81 (375)
                      -..++||+||++++++++.+|| .+|..||..|++ |+..+|+.+|....
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK   57 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence            3668999999999999999999 699999999998 99999999997643

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.49  E-value=2.7e-08  Score=77.31  Aligned_cols=48  Identities=19%  Similarity=0.242  Sum_probs=42.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhhhccC
Q 040726           33 KRGPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      +++.||.|||++|.+++.+|+.   +.|.+||+.+ + |+..+|+.||..+..
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence            5678999999999999999973   5699999998 4 999999999987653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.42  E-value=1e-07  Score=97.50  Aligned_cols=46  Identities=17%  Similarity=0.278  Sum_probs=42.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           88 GHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      ..||.||..++++++.+||.+|..||+.++.||..|||++|..+.+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999976543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.36  E-value=3.7e-07  Score=71.02  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=43.2

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      ...||.+|+.+|..++..|+.    +|.+||..|+|||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999984    699999999999999999999977543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.34  E-value=3.5e-07  Score=68.31  Aligned_cols=47  Identities=19%  Similarity=0.322  Sum_probs=42.5

Q ss_pred             CCCCChHHHHHHHHHHHHh--------CCc-chhhcc-cCCCCCHHHHHHHHHHhhh
Q 040726           87 RGHIAPDEEDLILRLHRLL--------GNR-WSLIAG-RIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~--------G~k-W~~IA~-~lpgRT~~qcrnRW~~~L~  133 (375)
                      |.+||+|||..|++.|.+|        |++ |..+++ .+|++|-.+||+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        543 999999 7999999999999998774

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.31  E-value=1.5e-07  Score=70.32  Aligned_cols=48  Identities=23%  Similarity=0.468  Sum_probs=42.5

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCccccccchhhhhhhccC
Q 040726           34 RGPWTPEEDELLANYINKE--------GEGRWRTLPK-RAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~--------g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      |.+||+|||++|+++|.+|        |..-|..+++ .++. ++..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence            5689999999999999999        4345999999 7876 999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.29  E-value=1.8e-07  Score=72.78  Aligned_cols=48  Identities=21%  Similarity=0.415  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhhhccCC
Q 040726           35 GPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWMNYLRP   83 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p   83 (375)
                      ..||.+|+.+|.+++..|+.   ++|.+||..+++ |+..+|+.||..++.-
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG   59 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhc
Confidence            47999999999999999975   469999999998 9999999999987643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.18  E-value=6.6e-07  Score=83.17  Aligned_cols=49  Identities=24%  Similarity=0.359  Sum_probs=44.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccC
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      ....+||.||++++++++.+|| ++|..||+.+++ |+..||+.+|.++..
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            3567899999999999999999 699999999998 999999999998764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=6.9e-06  Score=61.87  Aligned_cols=50  Identities=16%  Similarity=0.199  Sum_probs=45.6

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHHh
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAG-RIPGRTDNEIKNYWNTH  131 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcrnRW~~~  131 (375)
                      .|.++...||+||-.+..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            367788899999999999999999999999998 69999999999998744

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.92  E-value=2.9e-06  Score=65.82  Aligned_cols=43  Identities=21%  Similarity=0.272  Sum_probs=38.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHH
Q 040726           87 RGHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWN  129 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcrnRW~  129 (375)
                      ...||.+|+++|..++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999984    7999999999999999999984

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.87  E-value=1.8e-05  Score=64.08  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=52.1

Q ss_pred             hhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCC-----CCCHHHHHHHHHHhhhhHHHhC
Q 040726           75 LRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIP-----GRTDNEIKNYWNTHLSKKLISQ  139 (375)
Q Consensus        75 ~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lp-----gRT~~qcrnRW~~~L~~~l~~~  139 (375)
                      +.|..+|..    ..||.||...|++|+++|+-+|..|+..+.     .||-.++|.||+.+.++.+..+
T Consensus        22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            456666653    589999999999999999999999998874     7999999999999988776654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.87  E-value=9.3e-06  Score=65.26  Aligned_cols=46  Identities=15%  Similarity=0.294  Sum_probs=42.7

Q ss_pred             CCCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           88 GHIAPDEEDLILRLHRLLGN---RWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      --||.|||..||..+++-|.   .|..||+.|.+|+.+|+++||+.+++
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            46999999999999999985   79999999999999999999998874

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.84  E-value=3.5e-06  Score=65.36  Aligned_cols=43  Identities=14%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhh
Q 040726           35 GPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWM   78 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~   78 (375)
                      +.||.||+++|..++..|+.   ..|.+||..+|+ |+..+|+.+|.
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence            46999999999999999975   379999999998 99999999985

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.81  E-value=3.2e-05  Score=75.05  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=78.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhh-------hhhhc---------------------------
Q 040726           35 GPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRL-------RWMNY---------------------------   80 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~-------Rw~~~---------------------------   80 (375)
                      +.||..|...++.++.+||..+|..||..|++ ++...++.       ||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999987 88766642       22110                           


Q ss_pred             -------------c---CCCCCCCCCChHHHHHHHHHHHHhCC----cchhhcc------------cCCCCCHHHHHHHH
Q 040726           81 -------------L---RPSVKRGHIAPDEEDLILRLHRLLGN----RWSLIAG------------RIPGRTDNEIKNYW  128 (375)
Q Consensus        81 -------------L---~p~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~qcrnRW  128 (375)
                                   |   -+..+...||.+||..|+-++.+||-    .|..|..            ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   01224467999999999999999994    5999962            45679999999999


Q ss_pred             HHhhhh
Q 040726          129 NTHLSK  134 (375)
Q Consensus       129 ~~~L~~  134 (375)
                      ..+++-
T Consensus       270 ~tLi~~  275 (304)
T 1ofc_X          270 NTLITL  275 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988854

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.95  E-value=3.7e-06  Score=64.12  Aligned_cols=44  Identities=11%  Similarity=0.313  Sum_probs=41.2

Q ss_pred             CCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           89 HIAPDEEDLILRLHRLLGN---RWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      -||.|||..|+..+++-|.   .|..||..| +|+.+||.+||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999996   799999999 9999999999998763

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.54  E-value=8.5e-05  Score=60.26  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 040726           87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH  131 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~  131 (375)
                      ...||+||.++..+.+..||++|..|+..|++||..+|...|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            458999999999999999999999999999999999999998754

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=6.2e-05  Score=56.61  Aligned_cols=49  Identities=10%  Similarity=0.034  Sum_probs=43.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccccchhhhhhh
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPK-RAGLLRCGKSCRLRWMN   79 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~   79 (375)
                      .|.++...||+||-++..+++.+||. +|..|++ .++. |+..+|..-|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence            45677789999999999999999994 9999998 5887 999999987754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.48  E-value=0.00014  Score=55.86  Aligned_cols=44  Identities=16%  Similarity=0.176  Sum_probs=41.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHH
Q 040726           87 RGHIAPDEEDLILRLHRLLGNRWSLIAG-RIPGRTDNEIKNYWNT  130 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcrnRW~~  130 (375)
                      ...||+||-.+..+++.+||.+|..|++ .|++||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999999974

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.26  E-value=9.8e-05  Score=59.89  Aligned_cols=49  Identities=18%  Similarity=0.262  Sum_probs=42.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccccchhhhhhhcc
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG----LLRCGKSCRLRWMNYL   81 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~----~~Rt~~QCr~Rw~~~L   81 (375)
                      ++..+||.||+..|.+|+++|+ ..|..|+..+.    ..|+..++++||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999999 59999999983    2399999999998754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.22  E-value=0.00013  Score=74.78  Aligned_cols=47  Identities=23%  Similarity=0.357  Sum_probs=43.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~   80 (375)
                      ....+||.||-+++++++.+|| .+|..||+.+++ |+..||+..|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            3467999999999999999999 599999999998 9999999998765

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=97.01  E-value=0.0001  Score=73.23  Aligned_cols=17  Identities=6%  Similarity=-0.177  Sum_probs=8.6

Q ss_pred             CCCChHHHHHHHHHHHH
Q 040726           88 GHIAPDEEDLILRLHRL  104 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~  104 (375)
                      -+||-+|-..+.+.+++
T Consensus       125 ~P~Twdel~~~a~~l~~  141 (449)
T 3iot_A          125 PPKTWEEIPALDKELKA  141 (449)
T ss_dssp             CCSBGGGHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            45565555554444443

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.87  E-value=0.00059  Score=53.83  Aligned_cols=49  Identities=16%  Similarity=0.406  Sum_probs=40.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhC----------CcchhhcccCC----CCCHHHHHHHHHHhhhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLG----------NRWSLIAGRIP----GRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G----------~kW~~IA~~lp----gRT~~qcrnRW~~~L~~  134 (375)
                      +...||.+|..+||.++..+.          ..|..||..|.    .||+.||+.+|.++.+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            356899999999999997632          14999999973    69999999999986644

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=96.82  E-value=0.00026  Score=70.33  Aligned_cols=25  Identities=32%  Similarity=0.190  Sum_probs=14.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhC
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEG   53 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g   53 (375)
                      |.-+++-+||-+|=..+.+.+++-|
T Consensus       119 kdl~~~~P~Twdel~~~a~~l~~~g  143 (449)
T 3iot_A          119 KDLLPNPPKTWEEIPALDKELKAKG  143 (449)
T ss_dssp             TTTCSSCCSBGGGHHHHHHHHHTTT
T ss_pred             hHHhccCCCCHHHHHHHHHHHHhCC
Confidence            3344456777777665555555433

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.77  E-value=0.00052  Score=55.57  Aligned_cols=44  Identities=11%  Similarity=0.203  Sum_probs=39.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhh
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMN   79 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~   79 (375)
                      ...||+||.++..+++..|| .+|..|++.++. |+..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence            45799999999999999999 599999999998 999999987754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.67  E-value=0.00077  Score=51.64  Aligned_cols=45  Identities=13%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccccchhhhhhh
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLPK-RAGLLRCGKSCRLRWMN   79 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~   79 (375)
                      ....||+||-++..+++.+||. +|..|++ .+++ |+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence            4457999999999999999995 9999999 5887 999999987754

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.62  E-value=0.00022  Score=56.35  Aligned_cols=49  Identities=18%  Similarity=0.451  Sum_probs=39.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---ccccccchhhhhhhcc
Q 040726           33 KRGPWTPEEDELLANYINKEGE---------GRWRTLPKRAG---LLRCGKSCRLRWMNYL   81 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~---------~~W~~IA~~~~---~~Rt~~QCr~Rw~~~L   81 (375)
                      +...||.+|...|+.+...+..         ..|..||..|.   ..|++.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4568999999999999876421         15999999874   3499999999998864

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.31  E-value=0.0072  Score=60.05  Aligned_cols=100  Identities=19%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhh-------hhhhc---------------------------
Q 040726           35 GPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRL-------RWMNY---------------------------   80 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~-------Rw~~~---------------------------   80 (375)
                      +.||.-|=..++.++.+||..+-..||..|+++++...++.       ||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999899999999972277665551       11111                           


Q ss_pred             -------------c----CCC-CCCCCCChHHHHHHHHHHHHhC----Ccchhhccc------------CCCCCHHHHHH
Q 040726           81 -------------L----RPS-VKRGHIAPDEEDLILRLHRLLG----NRWSLIAGR------------IPGRTDNEIKN  126 (375)
Q Consensus        81 -------------L----~p~-lkkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~------------lpgRT~~qcrn  126 (375)
                                   |    .+. .++..||.+||..|+-++.+||    +.|..|-..            |..||...|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    011 1345799999999999999999    459888332            35699999999


Q ss_pred             HHHHhhhh
Q 040726          127 YWNTHLSK  134 (375)
Q Consensus       127 RW~~~L~~  134 (375)
                      |...+|+-
T Consensus       284 Rc~tLi~~  291 (374)
T 2y9y_A          284 RGNTLLQC  291 (374)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998854

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.85  E-value=0.006  Score=55.32  Aligned_cols=45  Identities=9%  Similarity=0.141  Sum_probs=34.8

Q ss_pred             CCChHHHHHHHHHHHHhC-CcchhhcccC--------------CCCCHHHHHHHHHHhhh
Q 040726           89 HIAPDEEDLILRLHRLLG-NRWSLIAGRI--------------PGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~l--------------pgRT~~qcrnRW~~~L~  133 (375)
                      .||.+||..|+..+.+|| ++|..|....              ..++...+..|...+|+
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            599999999999999999 8998875421              12567788888765553

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.81  E-value=0.0015  Score=49.85  Aligned_cols=46  Identities=15%  Similarity=0.268  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCccccccccCccccccchhhhhhhccC
Q 040726           35 GPWTPEEDELLANYINKEGE--GRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~--~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      -.||.|||..|+..+++-|.  .-|..||+.+ + |++.|+.+||...+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK   62 (70)
Confidence            46999999999999998885  3699999998 4 999999999987653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.52  E-value=0.0059  Score=49.05  Aligned_cols=44  Identities=16%  Similarity=0.354  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCccccccccCccccccchhhhhhh
Q 040726           35 GPWTPEEDELLANYINKEGE--GRWRTLPKRAGLLRCGKSCRLRWMN   79 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~--~~W~~IA~~~~~~Rt~~QCr~Rw~~   79 (375)
                      -.||.|||..|+...++.|.  .-|..||+.++. |+..|+.+||+.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~   79 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE   79 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence            36999999999999999875  469999999987 999999999975

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.71  E-value=0.013  Score=47.36  Aligned_cols=49  Identities=18%  Similarity=0.262  Sum_probs=41.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccccchhhhhhhcc
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG----LLRCGKSCRLRWMNYL   81 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~----~~Rt~~QCr~Rw~~~L   81 (375)
                      ++...||.||...|.+|+++|. -.|..|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            4456899999999999999999 59999998874    2389999999998764

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.86  E-value=0.085  Score=39.75  Aligned_cols=48  Identities=13%  Similarity=-0.008  Sum_probs=40.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc---chhhcccC--CCCCHHHHHHHHHHhh
Q 040726           85 VKRGHIAPDEEDLILRLHRLLGNR---WSLIAGRI--PGRTDNEIKNYWNTHL  132 (375)
Q Consensus        85 lkkg~WT~EED~~Ll~lv~~~G~k---W~~IA~~l--pgRT~~qcrnRW~~~L  132 (375)
                      ..+-.||+|..+..+++|.++|..   |..|-+.|  +|.|..+|+.|...|.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999954   77888876  7899999999887654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.47  E-value=0.093  Score=47.32  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=29.4

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 040726           27 CSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPK   62 (375)
Q Consensus        27 c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~   62 (375)
                      +.++......||.+||..|+..|.+||.++|..|-.
T Consensus       127 ~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          127 HTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            334444455799999999999999999999999954

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=90.18  E-value=0.4  Score=46.37  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=40.2

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           87 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      -+.||..+...++.++.+|| ..|..||..|+|+|...|+.++....
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw  156 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW  156 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            35799999999999999999 57999999999999999977665444

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.15  E-value=0.18  Score=48.07  Aligned_cols=28  Identities=39%  Similarity=0.622  Sum_probs=25.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 040726           35 GPWTPEEDELLANYINKEGEGRWRTLPK   62 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~~~W~~IA~   62 (375)
                      ..|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999954

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=80.29  E-value=1  Score=33.76  Aligned_cols=47  Identities=11%  Similarity=0.073  Sum_probs=34.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC---ccccccccCc-cccccchhhhhhh
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGR---WRTLPKRAGL-LRCGKSCRLRWMN   79 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~---W~~IA~~~~~-~Rt~~QCr~Rw~~   79 (375)
                      ..+-.||+|.-++.+++|...|. +   +..|-+.|+. +.|..++.-|...
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            35678999999999999999994 4   6678777653 1566677655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	375
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-20
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-08
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-17
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-17
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-16
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-14
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-11
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	9e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	0.002
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	0.002

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.5 bits (199), Expect = 4e-20
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          L +GPWT EED+ L   + K G  RW  + K     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.0 bits (187), Expect = 2e-18
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83
          +  WT EEDE L   + + G   W+ +       R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (109), Expect = 8e-08
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 87  RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLS 133
           +     +E++ + +L    G + W +IA  +P RTD + ++ W   L+
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 74.7 bits (183), Expect = 1e-17
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 36  PWTPEEDELLANYINKEGEGRWRTLPKRA---GLLRCGKSCRLRWMNYLR-----PSVKR 87
           P++  E E L   +   G GRWR +  RA      R     + +W   +      P  +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 88  GHIAPDEE-DLILRLHRLLGNR 108
           G   P +  D +L  H     +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (176), Expect = 7e-17
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL-RCGKSCRLRWMNYLR 82
          KR  W  EED+ L + + K GEG W  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 1e-16
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL-RCGKSCRLRWMNYLRPSV 85
          K+  WT EE E +   + K GEG W  + K    + R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 34  RGPWTPEEDELLANYINKEGEGRWRTLP--KRAGLL--RCGKSCRLRWMNYLRPSVKRGH 89
           +  +T EEDE + + + K    R       + +  +    G S R R+  YL   ++  +
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 90  IAPDEEDLILRLH 102
                  L+    
Sbjct: 61  EVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 87  RGHIAPDEEDLILRLHRLLGNR------WSLIAGRIPGRTDNEIKNYWNTHLSKKLISQG 140
           +     +E++ IL + R    R      +  I+  +P  T N I++ +  +LSK+L    
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 141 IDPRTHKPLNQE 152
              +  K +  +
Sbjct: 61  EVDKFGKLVRDD 72

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 87  RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL 132
           +     +E+ +I + H+ LGNRW+ IA  +PGRTDN IKN+WN+ +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 7e-11
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR 82
          +  WT EED ++     + G           G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLL--RCGKSCRLRW 77
             PWT  + +LL   + +   G      K A  +  +  + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 82  RPSVKRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYW 128
           R          +++ L+    +       + W  IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 88
             WT EE EL    + K G    + + K  G  R     +     Y +  VK G
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRRWTK-ISKLIGS-RTVLQVKSYARQYFKNKVKCG 54

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHK 147
            +E++L  +     G RW+ I+  I  RT  ++K+Y   +  K  +  G+D  T  
Sbjct: 7   IEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYF-KNKVKCGLDKETPN 61

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 9e-11
 Identities = 7/43 (16%), Positives = 13/43 (30%)

Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSK 134
             E++            + LIA  +  +T  E   Y+      
Sbjct: 22  EQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 37 WTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY 80
          WT +E+  L   +   G G W+ +  +    +  + C   +M Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 8/43 (18%), Positives = 22/43 (51%)

Query: 92  PDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSK 134
            +E+ L ++  R  G  +  I+  I  ++  ++KN++  +  +
Sbjct: 10  TEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR 82
              WT EE  L    I K G   ++ +    G  +     +  ++NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 36 PWTPEEDELLANYINKEGEGRWRTLPKRAGLL--RCGKSCRLRWMNYLRPSVKR 87
          PW+ +E++     +    +         A  +  R  +  +  +   L   +K 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 5  STSPSSTAAAAAAAATNKSTPCCSKVGLKRGPWTPEEDELLANYINKEG--EGRWRTLPK 62
           +S +     A+ A    +    S  G K   WT E D ++     ++G     +  + +
Sbjct: 4  GSSGAGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ 63

Query: 63 RAGLLRCGKSCRLRWMNYLR 82
          + G  +       R+   ++
Sbjct: 64 QLG-NKTPVEVSHRFRELMQ 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 7/42 (16%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 92  PDEEDLILRLHRLLGNR---WSLIAGRIPGRTDNEIKNYWNT 130
            + + +IL + +  G +   +S+I+ ++  +T  E+ + +  
Sbjct: 38  READRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	375
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.59
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.56
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.54
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.5
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.39
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.32
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.29
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.28
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.25
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.2
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.2
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.17
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.12
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.08
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.84
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.81
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.67
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.02
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.0
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.73
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.5
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.02
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.69
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.85
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.74
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	94.35
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	89.04
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	86.8
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	83.38

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.1e-20  Score=147.00  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=64.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHH
Q 040726           34 RGPWTPEEDELLANYINKEGEG-----RWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRL  104 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~-----~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~  104 (375)
                      |+.||+|||++|+++|.+||..     +|..||+.|++ |+++|||+||.++|+|.+++++||.+||.+|+.++..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpg-Rt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCC-CCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999864     39999999998 9999999999999999999999999999998775543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.2e-18  Score=124.58  Aligned_cols=52  Identities=46%  Similarity=0.876  Sum_probs=49.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726           32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS   84 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~   84 (375)
                      ++||+||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            57999999999999999999998899999999997 99999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.7e-17  Score=118.78  Aligned_cols=50  Identities=30%  Similarity=0.692  Sum_probs=47.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS   84 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~   84 (375)
                      |++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            678999999999999999998899999999988 99999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=7.3e-17  Score=116.43  Aligned_cols=50  Identities=28%  Similarity=0.681  Sum_probs=47.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           85 VKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        85 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      |+||+||+|||++|+++|.+|| .+|..||+.|++||+.||++||+++|+|
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5799999999999999999999 6899999999999999999999999976

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.2e-16  Score=112.92  Aligned_cols=47  Identities=45%  Similarity=0.851  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      |++||+|||++|+++|++||++|..||..|||||+++||+||+.+|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=3.8e-16  Score=123.80  Aligned_cols=65  Identities=23%  Similarity=0.313  Sum_probs=59.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc------chhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCc
Q 040726           87 RGHIAPDEEDLILRLHRLLGNR------WSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQ  151 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~  151 (375)
                      |+.||+|||++|+++|.+||.+      |.+||..|||||++|||+||+++|.+.+++..|+..+++.+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d   71 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRD   71 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHH
Confidence            5799999999999999999964      9999999999999999999999999999988888888876544

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1e-15  Score=109.33  Aligned_cols=48  Identities=25%  Similarity=0.555  Sum_probs=45.7

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      |++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|+|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999999976

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.54  E-value=5.4e-16  Score=122.02  Aligned_cols=74  Identities=27%  Similarity=0.486  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccc---Cccccccchhhhhhhcc-----CCCCCCCCCChHHHHHHHHHHHHhC
Q 040726           35 GPWTPEEDELLANYINKEGEGRWRTLPKRA---GLLRCGKSCRLRWMNYL-----RPSVKRGHIAPDEEDLILRLHRLLG  106 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~~---~~~Rt~~QCr~Rw~~~L-----~p~lkkg~WT~EED~~Ll~lv~~~G  106 (375)
                      .+||+|||++|+++|.+||.++|..|++.+   ..+|++.||++||+++|     .+..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            379999999999999999999999999753   23499999999999988     5677889999877   455555555


Q ss_pred             Ccchh
Q 040726          107 NRWSL  111 (375)
Q Consensus       107 ~kW~~  111 (375)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-15  Score=109.98  Aligned_cols=53  Identities=30%  Similarity=0.507  Sum_probs=48.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccccc--CccccccchhhhhhhccCCCCC
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRA--GLLRCGKSCRLRWMNYLRPSVK   86 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~--~~~Rt~~QCr~Rw~~~L~p~lk   86 (375)
                      ||++||+|||++|+++|.+||.++|..|++.+  .+ |++.||++||+++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~-Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCC-cCHHHHHHHHHHHhcCCCC
Confidence            57899999999999999999988999999874  45 9999999999999988764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.7e-14  Score=103.10  Aligned_cols=51  Identities=22%  Similarity=0.348  Sum_probs=46.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-Ccchhhccc--CCCCCHHHHHHHHHHhhhhHH
Q 040726           86 KRGHIAPDEEDLILRLHRLLG-NRWSLIAGR--IPGRTDNEIKNYWNTHLSKKL  136 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~--lpgRT~~qcrnRW~~~L~~~l  136 (375)
                      ++.+||+|||++|+++|.+|| .+|..|++.  |++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            478999999999999999999 589999987  569999999999999987754

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-14  Score=104.09  Aligned_cols=49  Identities=31%  Similarity=0.439  Sum_probs=44.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccC-ccccccchhhhhhhcc
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAG-LLRCGKSCRLRWMNYL   81 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~-~~Rt~~QCr~Rw~~~L   81 (375)
                      +|++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||++++
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999999999998754 2399999999999875

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2.8e-14  Score=100.61  Aligned_cols=47  Identities=26%  Similarity=0.550  Sum_probs=44.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccC
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      |++||+|||++|+++|++||. +|..||..|++ |++.+|+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~g-Rt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTT-CCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCC-CCHHHHHHHHHHHcC
Confidence            579999999999999999995 89999999998 999999999998863

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.7e-14  Score=99.99  Aligned_cols=48  Identities=27%  Similarity=0.308  Sum_probs=43.5

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CcchhhcccC--CCCCHHHHHHHHHHhhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLG-NRWSLIAGRI--PGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l--pgRT~~qcrnRW~~~L~  133 (375)
                      ++++||+|||++|+++|.+|| ++|..|++.+  .+||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 5899999875  59999999999998763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.7e-14  Score=100.68  Aligned_cols=44  Identities=23%  Similarity=0.589  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc
Q 040726           36 PWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        36 ~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~   80 (375)
                      .||.|||++|+++|.+||.++|..||+.|++ |++.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~-Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCC-CCHHHHHHHHHHh
Confidence            5999999999999999999899999999998 9999999999886

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.5e-13  Score=102.68  Aligned_cols=52  Identities=23%  Similarity=0.312  Sum_probs=48.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726           87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLIS  138 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~  138 (375)
                      ...||+|||.+|+++|..||.+|..||.+|++||..||++||+.++++..+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999999999999999876543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.5e-13  Score=94.28  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=41.0

Q ss_pred             CCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHh
Q 040726           89 HIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTH  131 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~  131 (375)
                      .||.|||.+|+++|.+|| ++|..||+.|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999876

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-12  Score=96.00  Aligned_cols=50  Identities=12%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHHHh
Q 040726           82 RPSVKRGHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWNTH  131 (375)
Q Consensus        82 ~p~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcrnRW~~~  131 (375)
                      .+...+++||+|||.+|+++|.+||.    +|.+||..|||||..||+.||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    599999999999999999999753

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.9e-13  Score=97.40  Aligned_cols=50  Identities=18%  Similarity=0.439  Sum_probs=45.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCC---CccccccccCccccccchhhhhhh
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEG---RWRTLPKRAGLLRCGKSCRLRWMN   79 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~---~W~~IA~~~~~~Rt~~QCr~Rw~~   79 (375)
                      ++...+++||+|||++|+++|.+||.+   +|..||+.|++ |++.||+.||..
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~-Rt~~qc~~R~~~   59 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKL   59 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            456678899999999999999999975   49999999998 999999999974

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.5e-13  Score=101.38  Aligned_cols=58  Identities=29%  Similarity=0.387  Sum_probs=51.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHH
Q 040726           35 GPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDE   94 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EE   94 (375)
                      .+||+|||++|+++|..|| .+|..||+.|++ ||..||+.||.++|.+..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~-Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            5799999999999999999 699999999997 999999999999998877777665544

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=6.8e-12  Score=100.06  Aligned_cols=70  Identities=11%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             cCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCc---chhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           64 AGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNR---WSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        64 ~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~k---W~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      ++. .+..+...++.+..+++.+...||.|||++||+.++++|.+   |..|++.|+||++.+||+||..+++-
T Consensus        11 ~p~-~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          11 LPK-ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             CCC-CCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            444 66677778888888888888999999999999999999977   99999999999999999999887743

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.20  E-value=7.1e-12  Score=93.09  Aligned_cols=46  Identities=22%  Similarity=0.394  Sum_probs=41.8

Q ss_pred             CCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           88 GHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      .+||+|||.+|++++.+||.    +|.+||..|||||..||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999995    49999999999999999999976543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.17  E-value=9.9e-12  Score=97.23  Aligned_cols=51  Identities=24%  Similarity=0.392  Sum_probs=45.6

Q ss_pred             CCChHHHHHHHHHHHHhC-Ccchhhccc----CCCCCHHHHHHHHHHhhhhHHHhC
Q 040726           89 HIAPDEEDLILRLHRLLG-NRWSLIAGR----IPGRTDNEIKNYWNTHLSKKLISQ  139 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~----lpgRT~~qcrnRW~~~L~~~l~~~  139 (375)
                      +||.|||++|+++|.+|| .+|..|++.    +++||+.|||+||+++|+......
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~   57 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP   57 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCc
Confidence            799999999999999999 589999875    689999999999999998765443

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.12  E-value=6.1e-12  Score=93.43  Aligned_cols=44  Identities=11%  Similarity=0.355  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ccccccccCccccccchhhhhhh
Q 040726           35 GPWTPEEDELLANYINKEGEGR---WRTLPKRAGLLRCGKSCRLRWMN   79 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~~~---W~~IA~~~~~~Rt~~QCr~Rw~~   79 (375)
                      .+||+|||++|+++|++||.+.   |.+||..|++ ||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~g-Rt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            4799999999999999999754   9999999998 999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.5e-11  Score=89.84  Aligned_cols=47  Identities=15%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      ...+||+|||.+|++++.+||.+|..||..|||||..||+++|+...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999998643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.7e-11  Score=88.91  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=44.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~  133 (375)
                      ...||++||.+|++++..||.+|..||..|+|||..+|++||+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999999999998754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.4e-10  Score=83.49  Aligned_cols=47  Identities=26%  Similarity=0.409  Sum_probs=43.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccC
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      ..+||++||++|.+++..|| .+|..||..|++ |+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~-kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            35699999999999999999 589999999998 999999999998753

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=5.6e-10  Score=83.68  Aligned_cols=49  Identities=10%  Similarity=0.126  Sum_probs=43.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhcc
Q 040726           31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL   81 (375)
Q Consensus        31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L   81 (375)
                      .....+||+|||++|+++|.+|| .+|..||..|++ |+..||+.||....
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~-rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTT-SCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            34556899999999999999999 599999999998 99999999997653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.9e-09  Score=85.76  Aligned_cols=51  Identities=18%  Similarity=0.337  Sum_probs=44.7

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCC--ccccccccCccccccchhhhhhhc
Q 040726           29 KVGLKRGPWTPEEDELLANYINKEGEGR--WRTLPKRAGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        29 k~~~kkg~WT~EED~~L~~lV~k~g~~~--W~~IA~~~~~~Rt~~QCr~Rw~~~   80 (375)
                      +.+.+...||.|||++|++.++++|...  |..||+.|++ |++.||+.||..+
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~-Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            3456677899999999999999999633  9999999988 9999999999753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.2e-06  Score=63.64  Aligned_cols=44  Identities=16%  Similarity=0.238  Sum_probs=40.1

Q ss_pred             CCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhh
Q 040726           88 GHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcrnRW~~~L  132 (375)
                      ..||.+|+.+|.+++.+|+    .+|.+||..| |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    5699999999 999999999997654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=3.3e-06  Score=60.69  Aligned_cols=43  Identities=16%  Similarity=0.216  Sum_probs=40.0

Q ss_pred             CCChHHHHHHHHHHHHhCCcchhhccc-CCCCCHHHHHHHHHHh
Q 040726           89 HIAPDEEDLILRLHRLLGNRWSLIAGR-IPGRTDNEIKNYWNTH  131 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~G~kW~~IA~~-lpgRT~~qcrnRW~~~  131 (375)
                      .||+||-.++.+++..||.+|..|++. +|+||..+|.+.|+..
T Consensus         3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            699999999999999999999999975 6999999999999754

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.4e-06  Score=60.58  Aligned_cols=44  Identities=20%  Similarity=0.295  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhhhc
Q 040726           35 GPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        35 g~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~~~   80 (375)
                      +.||.||+.+|.+++.+|..   ..|.+||..+ + |+..+|..||..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-g-kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-C-CCHHHHHHHHHHH
Confidence            47999999999999999964   3599999999 4 9999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=2e-05  Score=56.48  Aligned_cols=43  Identities=14%  Similarity=0.250  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-cCccccccchhhhhhhc
Q 040726           36 PWTPEEDELLANYINKEGEGRWRTLPKR-AGLLRCGKSCRLRWMNY   80 (375)
Q Consensus        36 ~WT~EED~~L~~lV~k~g~~~W~~IA~~-~~~~Rt~~QCr~Rw~~~   80 (375)
                      .||+||-.++.+++..|| .+|..|++. +++ |+..+|...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~-Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            599999999999999999 599999986 566 9999999987653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00038  Score=50.10  Aligned_cols=47  Identities=17%  Similarity=0.279  Sum_probs=40.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-chhhcc-cCCCCCHHHHHHHHHHhhh
Q 040726           87 RGHIAPDEEDLILRLHRLLG--------NR-WSLIAG-RIPGRTDNEIKNYWNTHLS  133 (375)
Q Consensus        87 kg~WT~EED~~Ll~lv~~~G--------~k-W~~IA~-~lpgRT~~qcrnRW~~~L~  133 (375)
                      |.+||.|||+.|++.|.++.        +. |..+++ .++.+|-...|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999985 6899999999999988774

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00047  Score=46.52  Aligned_cols=44  Identities=16%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCcchhhccc--C-CCCCHHHHHHHHHHh
Q 040726           88 GHIAPDEEDLILRLHRLLGNRWSLIAGR--I-PGRTDNEIKNYWNTH  131 (375)
Q Consensus        88 g~WT~EED~~Ll~lv~~~G~kW~~IA~~--l-pgRT~~qcrnRW~~~  131 (375)
                      ..||+||-..|+..|+.||+.|..|-=.  + +||+...+..+|+.+
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            4699999999999999999999998433  3 899999999999865

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.69  E-value=0.001  Score=48.49  Aligned_cols=47  Identities=13%  Similarity=0.039  Sum_probs=39.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCcch---hhccc--CCCCCHHHHHHHHHHhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNRWS---LIAGR--IPGRTDNEIKNYWNTHL  132 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~kW~---~IA~~--lpgRT~~qcrnRW~~~L  132 (375)
                      .+-.||+||.+++++++..+|..|.   .|...  ++++|..+|+.+...|.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999998774   56555  58999999999877664

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00083  Score=48.23  Aligned_cols=48  Identities=21%  Similarity=0.422  Sum_probs=39.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------Ccccccc-ccCccccccchhhhhhhccC
Q 040726           34 RGPWTPEEDELLANYINKEGEG--------RWRTLPK-RAGLLRCGKSCRLRWMNYLR   82 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~--------~W~~IA~-~~~~~Rt~~QCr~Rw~~~L~   82 (375)
                      |.+||.|||+.|++.|.++...        =|..+++ .++. ++..+-|+||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~-HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhc
Confidence            5689999999999999998432        2988885 4554 899999999998874

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0039  Score=45.77  Aligned_cols=51  Identities=20%  Similarity=0.368  Sum_probs=43.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhhhccCC
Q 040726           32 LKRGPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWMNYLRP   83 (375)
Q Consensus        32 ~kkg~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p   83 (375)
                      ...+.|+++|-++|-.++.....   +-|..||..++. |++..|...|...+.-
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGt-RSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHcc-CCHHHHHHHHHhCccc
Confidence            34568999999999999997754   569999999999 9999999999887654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.024  Score=41.44  Aligned_cols=49  Identities=14%  Similarity=0.157  Sum_probs=43.1

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCc----chhhcccCCCCCHHHHHHHHHHhhhh
Q 040726           86 KRGHIAPDEEDLILRLHRLLGNR----WSLIAGRIPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        86 kkg~WT~EED~~Ll~lv~~~G~k----W~~IA~~lpgRT~~qcrnRW~~~L~~  134 (375)
                      ..+.|+++|-.+|-.++..+...    |..||-.+..|+...|..+|...++.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            45689999999999999998843    99999999999999999999877544

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.35  E-value=0.013  Score=42.45  Aligned_cols=48  Identities=13%  Similarity=0.155  Sum_probs=34.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCc--cccccccCc-cccccchhhhhhhc
Q 040726           33 KRGPWTPEEDELLANYINKEGEGRW--RTLPKRAGL-LRCGKSCRLRWMNY   80 (375)
Q Consensus        33 kkg~WT~EED~~L~~lV~k~g~~~W--~~IA~~~~~-~Rt~~QCr~Rw~~~   80 (375)
                      .+-.||+||.++.+.+|..+|...|  ..|.+.|+. ++|..||+-+...|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4567999999999999999996333  356665532 27888888765544

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.04  E-value=0.094  Score=35.00  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=34.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccccchhhhhhh
Q 040726           34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAG--LLRCGKSCRLRWMN   79 (375)
Q Consensus        34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~--~~Rt~~QCr~Rw~~   79 (375)
                      |..||.||-.-|...|+++| +.|..|-=.++  .+|+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            45799999999999999999 69999854333  23777777777654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.80  E-value=0.75  Score=31.46  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             CCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHH
Q 040726           89 HIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWN  129 (375)
Q Consensus        89 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~  129 (375)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            499999999999999999 57999999999999999887554

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.38  E-value=0.42  Score=38.64  Aligned_cols=51  Identities=20%  Similarity=0.297  Sum_probs=40.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC-Cc---chhhccc------------CCCCCHHHHHHHHHHhhhh
Q 040726           84 SVKRGHIAPDEEDLILRLHRLLG-NR---WSLIAGR------------IPGRTDNEIKNYWNTHLSK  134 (375)
Q Consensus        84 ~lkkg~WT~EED~~Ll~lv~~~G-~k---W~~IA~~------------lpgRT~~qcrnRW~~~L~~  134 (375)
                      ..++..+|.|||.-|+-++.+|| .+   |..|-..            |..||+..+..|...+|.-
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL  112 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHH
Confidence            34555799999999999999999 45   8776322            2469999999999988754